AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene040075

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene040075.t1 MTR_3g450850 89.347 291 25 2 1 290 1 286 0.0 523
MS.gene040075.t1 MTR_4g035820 37.171 304 180 4 5 306 30 324 1.38e-53 197
MS.gene040075.t1 MTR_4g035820 47.917 96 50 0 439 534 326 421 5.16e-21 98.6
MS.gene040075.t1 MTR_3g012160 80.645 93 18 0 199 291 1 93 9.79e-46 158
MS.gene040075.t1 MTR_4g071400 65.000 120 40 1 595 712 1 120 2.46e-44 155
MS.gene040075.t1 MTR_1g070355 33.607 244 144 7 57 296 80 309 4.15e-30 126
MS.gene040075.t1 MTR_6g051425 29.766 299 195 8 38 331 3 291 1.97e-29 120
MS.gene040075.t1 MTR_5g083630 84.483 58 9 0 200 257 19 76 4.95e-25 100
MS.gene040075.t1 MTR_5g076070 26.860 242 157 7 54 290 56 282 8.63e-22 96.7
MS.gene040075.t1 MTR_3g095940 74.074 54 14 0 504 557 90 143 1.05e-20 89.7
MS.gene040075.t1 MTR_8g442610 67.857 56 12 2 1 55 1 51 5.98e-16 73.6
MS.gene040075.t1 MTR_6g014355 37.324 142 73 3 115 254 5 132 2.60e-15 76.6
MS.gene040075.t1 MTR_6g022080 34.307 137 80 4 63 198 97 224 1.12e-14 75.1
MS.gene040075.t1 MTR_0558s0020 26.217 267 166 9 56 302 41 296 2.22e-14 75.1
MS.gene040075.t1 MTR_8g446020 27.174 184 124 4 123 302 79 256 1.04e-12 69.3
MS.gene040075.t1 MTR_7g446510 30.288 208 131 7 107 310 132 329 5.30e-12 68.2
MS.gene040075.t1 MTR_7g446480 31.492 181 114 6 134 310 140 314 8.18e-12 67.4
MS.gene040075.t1 MTR_1g019850 32.353 136 76 4 57 192 76 195 2.05e-11 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene040075.t1 AT1G10240 46.584 644 333 5 46 685 43 679 0.0 615
MS.gene040075.t1 AT1G10240 46.584 644 333 5 46 685 43 679 0.0 615
MS.gene040075.t1 AT5G28530 43.807 662 338 7 22 668 28 670 0.0 557
MS.gene040075.t1 AT5G28530 43.807 662 338 7 22 668 28 670 0.0 557
MS.gene040075.t1 AT5G28530 43.807 662 342 7 22 668 28 674 0.0 554
MS.gene040075.t1 AT5G28530 39.877 652 315 9 22 668 28 607 2.01e-155 465
MS.gene040075.t1 AT5G28530 39.877 652 319 9 22 668 28 611 8.38e-155 464
MS.gene040075.t1 AT4G38180 31.271 582 376 9 48 618 70 638 1.17e-82 280
MS.gene040075.t1 AT4G15090 29.016 579 382 11 48 615 48 608 2.09e-77 266
MS.gene040075.t1 AT4G15090 29.016 579 382 11 48 615 48 608 2.09e-77 266
MS.gene040075.t1 AT4G15090 29.016 579 382 11 48 615 48 608 2.09e-77 266
MS.gene040075.t1 AT4G15090 29.016 579 382 11 48 615 48 608 2.09e-77 266
MS.gene040075.t1 AT4G15090 29.016 579 382 11 48 615 48 608 2.09e-77 266
MS.gene040075.t1 AT1G76320 27.194 581 383 12 57 628 3 552 1.05e-66 233
MS.gene040075.t1 AT1G76320 27.194 581 383 12 57 628 3 552 1.86e-66 234
MS.gene040075.t1 AT1G76320 27.194 581 383 12 57 628 3 552 1.94e-66 234
MS.gene040075.t1 AT1G76320 27.194 581 383 12 57 628 3 552 1.94e-66 234
MS.gene040075.t1 AT3G22170 26.043 599 358 15 51 615 70 617 1.42e-63 228
MS.gene040075.t1 AT3G22170 26.043 599 358 15 51 615 70 617 1.42e-63 228
MS.gene040075.t1 AT3G06250 28.471 569 340 14 51 611 190 699 7.25e-60 216
MS.gene040075.t1 AT3G06250 28.471 569 340 14 51 611 190 699 7.25e-60 216
MS.gene040075.t1 AT3G06250 28.471 569 340 14 51 611 190 699 7.25e-60 216
MS.gene040075.t1 AT5G18960 27.014 633 386 16 37 661 197 761 2.30e-58 212
MS.gene040075.t1 AT5G18960 27.014 633 386 16 37 661 197 761 2.30e-58 212
MS.gene040075.t1 AT2G27110 26.780 590 384 13 51 633 49 597 1.95e-57 211
MS.gene040075.t1 AT2G27110 26.780 590 384 13 51 633 49 597 1.95e-57 211
MS.gene040075.t1 AT1G52520 26.859 659 421 20 50 686 84 703 4.69e-53 196
MS.gene040075.t1 AT2G27110 29.157 415 281 7 226 633 44 452 1.24e-52 195
MS.gene040075.t1 AT4G19990 26.146 589 356 15 53 615 23 558 1.13e-50 190
MS.gene040075.t1 AT4G19990 26.146 589 356 15 53 615 23 558 1.13e-50 190
MS.gene040075.t1 AT4G19990 26.576 587 356 15 53 615 23 558 1.13e-50 190
MS.gene040075.t1 AT4G19990 26.576 587 356 15 53 615 23 558 1.13e-50 190
MS.gene040075.t1 AT4G19990 26.146 589 356 15 53 615 23 558 1.21e-50 189
MS.gene040075.t1 AT4G19990 26.146 589 356 15 53 615 37 572 1.43e-50 189
MS.gene040075.t1 AT2G32250 25.265 566 363 12 54 614 41 551 4.90e-50 188
MS.gene040075.t1 AT2G32250 25.265 566 363 12 54 614 41 551 5.02e-50 188
MS.gene040075.t1 AT2G32250 25.265 566 363 12 54 614 41 551 5.02e-50 188
MS.gene040075.t1 AT2G32250 25.265 566 363 12 54 614 41 551 6.27e-50 188
MS.gene040075.t1 AT2G32250 25.265 566 363 12 54 614 41 551 6.27e-50 188
MS.gene040075.t1 AT2G32250 25.265 566 363 12 54 614 41 551 6.27e-50 188
MS.gene040075.t1 AT2G32250 25.222 563 361 12 57 614 3 510 8.73e-50 187
MS.gene040075.t1 AT2G32250 25.222 563 361 12 57 614 3 510 8.73e-50 187
MS.gene040075.t1 AT4G19990 26.443 537 328 13 102 615 9 501 5.61e-47 178
MS.gene040075.t1 AT1G80010 24.671 608 371 18 51 614 95 659 6.76e-46 175
MS.gene040075.t1 AT4G38170 27.051 451 282 8 238 668 20 443 7.30e-45 169

Find 111 sgRNAs with CRISPR-Local

Find 154 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTATTCGCTTCGTCAATTT+TGG 0.087673 6.3:-46112735 MS.gene040075:CDS
ACAAATTGGAGCACATTATT+TGG 0.097710 6.3:-46113328 MS.gene040075:CDS
CGACATGCCGCTTGGTATTT+TGG 0.131409 6.3:-46113225 MS.gene040075:CDS
TTAATCATGTGACTAGATTT+TGG 0.164848 6.3:+46112085 None:intergenic
CTCATGTTGAATCAACTTAA+AGG 0.216965 6.3:+46112363 None:intergenic
TTCCTTTACATGGGCTATAA+AGG 0.281917 6.3:-46113135 MS.gene040075:intron
AATCGACGAAAATAACAAAT+TGG 0.284735 6.3:-46113342 MS.gene040075:CDS
TAGAACACAACCAAAGAAAA+TGG 0.288289 6.3:+46113178 None:intergenic
ACATTCAACTCATCATTATC+TGG 0.288967 6.3:+46111893 None:intergenic
TACGAGGATTGTGGTACTTT+TGG 0.294933 6.3:+46112440 None:intergenic
AATCATCTTCACATTCTAAA+TGG 0.310029 6.3:+46112824 None:intergenic
CCAAAAGGATCAAGGCTAAA+AGG 0.316490 6.3:-46111836 MS.gene040075:CDS
TGATCAGTTCCACCGCAATT+TGG 0.318106 6.3:+46111773 None:intergenic
GCGAATAGAGCAAGTAAATA+TGG 0.328166 6.3:+46112749 None:intergenic
CAAATTGGAGCACATTATTT+GGG 0.331042 6.3:-46113327 MS.gene040075:CDS
AAAGCGGCCTCCGTCACTTT+TGG 0.333584 6.3:+46112273 None:intergenic
ATAATGAAGTGGAAGGTAAA+AGG 0.341694 6.3:-46113769 MS.gene040075:CDS
GAGCACATTATTTGGGCATT+TGG 0.347058 6.3:-46113320 MS.gene040075:CDS
ATTCAATCTCAAAGTGGTAT+TGG 0.353310 6.3:-46113446 MS.gene040075:CDS
GTGGCTCCCTTGTTAAGTTT+AGG 0.365380 6.3:-46112054 MS.gene040075:CDS
TTAAATACCTTTCCTTCATA+AGG 0.366785 6.3:+46113965 None:intergenic
TCATCGTATCTCGACCCTAA+TGG 0.373310 6.3:+46112874 None:intergenic
GAAATCAGTCAGACTTGTAT+TGG 0.379332 6.3:+46112618 None:intergenic
CATGGCTTTAATCACTTGAA+TGG 0.382567 6.3:+46111952 None:intergenic
TTTGCTGGAATGACTACAAC+TGG 0.388310 6.3:-46112685 MS.gene040075:CDS
CAAAATGCATGCTTTGTGTT+TGG 0.392144 6.3:+46112940 None:intergenic
AGAAGATTCCTTCCTTTACA+TGG 0.405041 6.3:-46113145 MS.gene040075:CDS
GATGCGGCATGTTCCTCAAT+AGG 0.414686 6.3:+46112403 None:intergenic
GATGATTCTGTTCCTTATGA+AGG 0.424416 6.3:-46113977 MS.gene040075:CDS
CCACTCATTTCTTCCCTCAA+TGG 0.424520 6.3:+46114111 None:intergenic
ACCAAGTTGGTAACTTTGCC+AGG 0.432753 6.3:+46112905 None:intergenic
AACAGAATCATCAATGTGAT+TGG 0.434495 6.3:+46113988 None:intergenic
TGAGAGGGAATGGAAATTGA+TGG 0.437961 6.3:-46112800 MS.gene040075:CDS
TTGGGCCCTAGCTTATTTGA+AGG 0.438270 6.3:-46112716 MS.gene040075:CDS
CAGTCGGAAGATAATCCATT+AGG 0.454154 6.3:-46113848 MS.gene040075:CDS
CCAAGTATCTTCCTCTTCGT+TGG 0.454342 6.3:-46112129 MS.gene040075:CDS
GTAACGATTTATTCGATAAG+TGG 0.456829 6.3:+46113247 None:intergenic
TGAATCAACTTAAAGGCATA+AGG 0.471446 6.3:+46112370 None:intergenic
ACGGAGGCCGCTTTGTAAGT+TGG 0.473799 6.3:-46112264 MS.gene040075:CDS
TTGGTTGGGGTCGATAATCA+TGG 0.477466 6.3:-46113206 MS.gene040075:CDS
GAGATAATTATGTCCATTGA+GGG 0.480622 6.3:-46114124 None:intergenic
TGAGTTATTAGATGATAAAG+AGG 0.481430 6.3:-46113636 MS.gene040075:CDS
GTTGGTGGGTGTTGATTCTA+CGG 0.481982 6.3:-46111918 MS.gene040075:CDS
AGAAGTCCTTCAAATAAGCT+AGG 0.482445 6.3:+46112710 None:intergenic
TGGTTGTGGTGCTAAATTGT+TGG 0.487405 6.3:-46113726 MS.gene040075:CDS
ATTCGAGCATATGAAGCCTT+CGG 0.487986 6.3:-46113290 MS.gene040075:CDS
CAAATTCCTTGCAAGAACAA+TGG 0.494565 6.3:+46112221 None:intergenic
TCCTGGCAAAGTTACCAACT+TGG 0.495704 6.3:-46112906 MS.gene040075:CDS
ATGTGATTGGCTTGAGGCAA+AGG 0.498857 6.3:+46114001 None:intergenic
TGATCTGTAAGAATTGTTTG+TGG 0.499648 6.3:+46113000 None:intergenic
CCAACGAAGAGGAAGATACT+TGG 0.501458 6.3:+46112129 None:intergenic
TCAGACTTGTATTGGCTCCC+AGG 0.503601 6.3:+46112626 None:intergenic
TTGAAAGGTCAGAGAATCAA+TGG 0.506346 6.3:+46114039 None:intergenic
GAGTTTGTTTGTCATCGTGC+TGG 0.506578 6.3:-46113812 MS.gene040075:CDS
AAAACAAAAGGTCGACCAAA+AGG 0.507451 6.3:-46111851 MS.gene040075:CDS
AATTTCTAGACATTGAACTA+AGG 0.509157 6.3:+46112030 None:intergenic
GCTGGAATACTTCGATAAGC+AGG 0.512358 6.3:+46113602 None:intergenic
CTTTATCATCTAATAACTCA+TGG 0.514899 6.3:+46113639 None:intergenic
CTAAGGACCTAAACTTAACA+AGG 0.515538 6.3:+46112047 None:intergenic
AGGAAGATACTTGGAAGGGA+GGG 0.517778 6.3:+46112138 None:intergenic
AATCGTTACGACATGCCGCT+TGG 0.519527 6.3:-46113233 MS.gene040075:CDS
ATACGATCTTGATCAATAGC+TGG 0.520246 6.3:+46113584 None:intergenic
TGAGATAATTATGTCCATTG+AGG 0.520269 6.3:-46114125 None:intergenic
AGCCATGCCTCAAGAAAAGT+TGG 0.525481 6.3:-46111936 MS.gene040075:CDS
ATCAATCCATTGTTCTTGCA+AGG 0.526683 6.3:-46112227 MS.gene040075:CDS
TACCTTTATAGCCCATGTAA+AGG 0.539233 6.3:+46113133 None:intergenic
AAGTGGAAGGTAAAAGGAAA+CGG 0.542859 6.3:-46113763 MS.gene040075:CDS
TTCTGTTCCTTATGAAGGAA+AGG 0.547107 6.3:-46113972 MS.gene040075:CDS
CGAAGAGGAAGATACTTGGA+AGG 0.558742 6.3:+46112133 None:intergenic
GGTATTTAACAGTGATGATG+AGG 0.560265 6.3:-46113951 MS.gene040075:CDS
CAAATCTATTAAGAATCAGT+CGG 0.561407 6.3:-46113864 MS.gene040075:CDS
TCCATGTTGCGGCTCTTGAA+AGG 0.562596 6.3:+46114024 None:intergenic
CATTGTCATGTTCCAAATTG+CGG 0.563875 6.3:-46111785 MS.gene040075:CDS
AAGGTCGACCAAAAGGATCA+AGG 0.568587 6.3:-46111844 MS.gene040075:CDS
GAAGATTCCTTCCTTTACAT+GGG 0.569744 6.3:-46113144 MS.gene040075:CDS
GTTAACATTAGAAATCAAGC+TGG 0.579097 6.3:-46112481 MS.gene040075:CDS
CGTAGACAAAGATAATGAAG+TGG 0.583069 6.3:-46113780 MS.gene040075:CDS
AATGGAAGAGAAAACCAAGT+TGG 0.583280 6.3:+46112892 None:intergenic
TTTATAGCCCATGTAAAGGA+AGG 0.583563 6.3:+46113137 None:intergenic
CTTTCTTGTCTCCAACGAAG+AGG 0.594476 6.3:+46112118 None:intergenic
TGAGGCAAAGGTCCATGTTG+CGG 0.597181 6.3:+46114013 None:intergenic
GACAAAGATAATGAAGTGGA+AGG 0.597807 6.3:-46113776 MS.gene040075:CDS
GAAGTCCTTCAAATAAGCTA+GGG 0.599709 6.3:+46112711 None:intergenic
GAGGAAGATACTTGGAAGGG+AGG 0.601334 6.3:+46112137 None:intergenic
ACCTTTCAAGAGCCGCAACA+TGG 0.604499 6.3:-46114025 MS.gene040075:CDS
TGTCATGTTCCAAATTGCGG+TGG 0.607106 6.3:-46111782 MS.gene040075:CDS
TTTAGTATATGAAGATGATG+AGG 0.619760 6.3:-46114062 MS.gene040075:CDS
ATGTTCTAATACGAGGATTG+TGG 0.629226 6.3:+46112431 None:intergenic
CGACATCATACCAAAAGTGA+CGG 0.631042 6.3:-46112283 MS.gene040075:CDS
CATGCCTCAAGAAAAGTTGG+TGG 0.631668 6.3:-46111933 MS.gene040075:CDS
AATGAAAGAAGCTATTGCAA+TGG 0.632777 6.3:-46112968 MS.gene040075:CDS
AATTTCATTCAATCTCAAAG+TGG 0.633071 6.3:-46113452 MS.gene040075:CDS
CACATGATTAACAACAATGG+TGG 0.633540 6.3:-46112073 MS.gene040075:CDS
CTTGTATCCAACTTACAAAG+CGG 0.636419 6.3:+46112257 None:intergenic
AAACGGAAGTCGTCAAGATG+TGG 0.638263 6.3:-46113746 MS.gene040075:CDS
TACTTATTAGGAGATTGAGA+AGG 0.640164 6.3:+46111704 None:intergenic
TCATCAATGTGATTGGCTTG+AGG 0.640180 6.3:+46113995 None:intergenic
AAGTCGTCAAGATGTGGTTG+TGG 0.648789 6.3:-46113740 MS.gene040075:CDS
ATGCCTCAAGAAAAGTTGGT+GGG 0.657094 6.3:-46111932 MS.gene040075:CDS
AGTCACATGATTAACAACAA+TGG 0.669494 6.3:-46112076 MS.gene040075:CDS
ACCCCAACCAAAATACCAAG+CGG 0.669960 6.3:+46113218 None:intergenic
TAAGGACCTAAACTTAACAA+GGG 0.674248 6.3:+46112048 None:intergenic
ATAAGGTGTAAGAATAGATG+CGG 0.674460 6.3:+46112387 None:intergenic
GAAGAGGAAGATACTTGGAA+GGG 0.674893 6.3:+46112134 None:intergenic
GTGGAACTGATCATGACTCG+AGG 0.680713 6.3:-46111763 MS.gene040075:CDS
AAAGGATCAAGGCTAAAAGG+AGG 0.688106 6.3:-46111833 MS.gene040075:CDS
CATCATACCAAAAGTGACGG+AGG 0.689601 6.3:-46112280 MS.gene040075:CDS
GGAAAACATGTTCTAATACG+AGG 0.689981 6.3:+46112424 None:intergenic
CATTGAGGGAAGAAATGAGT+GGG 0.697138 6.3:-46114110 MS.gene040075:CDS
CCATTGAGGGAAGAAATGAG+TGG 0.712379 6.3:-46114111 MS.gene040075:CDS
TTTGGAACATGACAATGACG+AGG 0.714978 6.3:+46111791 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TCAATATTTTTCTTTTTATT+TGG + chr6.3:46114087-46114106 None:intergenic 10.0%
!! TAATTAATATATTGTTGTGC+AGG - chr6.3:46113303-46113322 MS.gene040075:CDS 20.0%
!! TCATATATAAAAAGATTCCT+GGG - chr6.3:46113175-46113194 MS.gene040075:CDS 20.0%
!! TTCATATATAAAAAGATTCC+TGG - chr6.3:46113174-46113193 MS.gene040075:CDS 20.0%
! AATCATCTTCACATTCTAAA+TGG + chr6.3:46112997-46113016 None:intergenic 25.0%
! AATCGACGAAAATAACAAAT+TGG - chr6.3:46112476-46112495 MS.gene040075:CDS 25.0%
! AATTTCATTCAATCTCAAAG+TGG - chr6.3:46112366-46112385 MS.gene040075:CDS 25.0%
! CAAATCTATTAAGAATCAGT+CGG - chr6.3:46111954-46111973 MS.gene040075:CDS 25.0%
! CTAATGTCTTTATCCAAAAA+TGG + chr6.3:46112345-46112364 None:intergenic 25.0%
! CTTTATCATCTAATAACTCA+TGG + chr6.3:46112182-46112201 None:intergenic 25.0%
! GGTACATTTCTATTTATTTG+AGG - chr6.3:46112704-46112723 MS.gene040075:CDS 25.0%
! TGAGTTATTAGATGATAAAG+AGG - chr6.3:46112182-46112201 MS.gene040075:CDS 25.0%
! TTAAATACCTTTCCTTCATA+AGG + chr6.3:46111856-46111875 None:intergenic 25.0%
! TTTAGTATATGAAGATGATG+AGG - chr6.3:46111756-46111775 MS.gene040075:CDS 25.0%
!! AATTAACTCTGAGAAAAAGT+GGG - chr6.3:46112128-46112147 MS.gene040075:CDS 25.0%
!! AATTTCTAGACATTGAACTA+AGG + chr6.3:46113791-46113810 None:intergenic 25.0%
!! TATTATGTAGACATGCTTTT+CGG - chr6.3:46113632-46113651 MS.gene040075:CDS 25.0%
!! TCTCTTTTATAAACACCTAA+TGG + chr6.3:46111988-46112007 None:intergenic 25.0%
!! TTAATCATGTGACTAGATTT+TGG + chr6.3:46113736-46113755 None:intergenic 25.0%
!!! ACTTTTCTTAGTTTTGTCAA+AGG - chr6.3:46112788-46112807 MS.gene040075:CDS 25.0%
AACAGAATCATCAATGTGAT+TGG + chr6.3:46111833-46111852 None:intergenic 30.0%
AATATATTGTTGTGCAGGTT+GGG - chr6.3:46113308-46113327 MS.gene040075:CDS 30.0%
AATGAAAGAAGCTATTGCAA+TGG - chr6.3:46112850-46112869 MS.gene040075:CDS 30.0%
ACAAATTGGAGCACATTATT+TGG - chr6.3:46112490-46112509 MS.gene040075:CDS 30.0%
ACATTCAACTCATCATTATC+TGG + chr6.3:46113928-46113947 None:intergenic 30.0%
AGTCACATGATTAACAACAA+TGG - chr6.3:46113742-46113761 MS.gene040075:CDS 30.0%
ATAAGGTGTAAGAATAGATG+CGG + chr6.3:46113434-46113453 None:intergenic 30.0%
ATAATGAAGTGGAAGGTAAA+AGG - chr6.3:46112049-46112068 MS.gene040075:CDS 30.0%
ATTCAATCTCAAAGTGGTAT+TGG - chr6.3:46112372-46112391 MS.gene040075:CDS 30.0%
CAAATTGGAGCACATTATTT+GGG - chr6.3:46112491-46112510 MS.gene040075:CDS 30.0%
CCTTTACCTTCAAAAACAAA+AGG - chr6.3:46113955-46113974 MS.gene040075:CDS 30.0%
CTCATGTTGAATCAACTTAA+AGG + chr6.3:46113458-46113477 None:intergenic 30.0%
GTAACGATTTATTCGATAAG+TGG + chr6.3:46112574-46112593 None:intergenic 30.0%
GTTAACATTAGAAATCAAGC+TGG - chr6.3:46113337-46113356 MS.gene040075:CDS 30.0%
TAAGGACCTAAACTTAACAA+GGG + chr6.3:46113773-46113792 None:intergenic 30.0%
TAATATATTGTTGTGCAGGT+TGG - chr6.3:46113307-46113326 MS.gene040075:CDS 30.0%
TACTTATTAGGAGATTGAGA+AGG + chr6.3:46114117-46114136 None:intergenic 30.0%
TAGAACACAACCAAAGAAAA+TGG + chr6.3:46112643-46112662 None:intergenic 30.0%
TGATCTGTAAGAATTGTTTG+TGG + chr6.3:46112821-46112840 None:intergenic 30.0%
TGTTTGTTTGCTCGAAAAAA+TGG - chr6.3:46111904-46111923 MS.gene040075:CDS 30.0%
! AATGTGAAGATGATTTTGAG+AGG - chr6.3:46113002-46113021 MS.gene040075:CDS 30.0%
! ATTATGTAGACATGCTTTTC+GGG - chr6.3:46113633-46113652 MS.gene040075:CDS 30.0%
! CAATTAACTCTGAGAAAAAG+TGG - chr6.3:46112127-46112146 MS.gene040075:CDS 30.0%
! GCAAGGAATTTGAATTTTCT+GGG - chr6.3:46113608-46113627 MS.gene040075:CDS 30.0%
! TAGAACATGTTTTCCTATTG+AGG - chr6.3:46113402-46113421 MS.gene040075:CDS 30.0%
! TGAATCAACTTAAAGGCATA+AGG + chr6.3:46113451-46113470 None:intergenic 30.0%
! TGCAAGGAATTTGAATTTTC+TGG - chr6.3:46113607-46113626 MS.gene040075:CDS 30.0%
!! ATGTGAAGATGATTTTGAGA+GGG - chr6.3:46113003-46113022 MS.gene040075:CDS 30.0%
!! ATTCTTTTGTTGTCAAAAGC+TGG - chr6.3:46112255-46112274 MS.gene040075:CDS 30.0%
!!! CCTTTTGTTTTTGAAGGTAA+AGG + chr6.3:46113958-46113977 None:intergenic 30.0%
AAAAACAATCACATCTCCGA+AGG + chr6.3:46112547-46112566 None:intergenic 35.0%
AAAACAAAAGGTCGACCAAA+AGG - chr6.3:46113967-46113986 MS.gene040075:CDS 35.0%
AAGTGGAAGGTAAAAGGAAA+CGG - chr6.3:46112055-46112074 MS.gene040075:CDS 35.0%
AATGGAAGAGAAAACCAAGT+TGG + chr6.3:46112929-46112948 None:intergenic 35.0%
AGAAGATTCCTTCCTTTACA+TGG - chr6.3:46112673-46112692 MS.gene040075:CDS 35.0%
AGAAGTCCTTCAAATAAGCT+AGG + chr6.3:46113111-46113130 None:intergenic 35.0%
ATACGATCTTGATCAATAGC+TGG + chr6.3:46112237-46112256 None:intergenic 35.0%
ATATATTGTTGTGCAGGTTG+GGG - chr6.3:46113309-46113328 MS.gene040075:CDS 35.0%
ATCAATCCATTGTTCTTGCA+AGG - chr6.3:46113591-46113610 MS.gene040075:CDS 35.0%
ATGTTCTAATACGAGGATTG+TGG + chr6.3:46113390-46113409 None:intergenic 35.0%
CAAAATGCATGCTTTGTGTT+TGG + chr6.3:46112881-46112900 None:intergenic 35.0%
CAAATTCCTTGCAAGAACAA+TGG + chr6.3:46113600-46113619 None:intergenic 35.0%
CACATGATTAACAACAATGG+TGG - chr6.3:46113745-46113764 MS.gene040075:CDS 35.0%
CATTGTCATGTTCCAAATTG+CGG - chr6.3:46114033-46114052 MS.gene040075:CDS 35.0%
CGTAGACAAAGATAATGAAG+TGG - chr6.3:46112038-46112057 MS.gene040075:CDS 35.0%
CTAAGGACCTAAACTTAACA+AGG + chr6.3:46113774-46113793 None:intergenic 35.0%
CTTGTATCCAACTTACAAAG+CGG + chr6.3:46113564-46113583 None:intergenic 35.0%
GAAATCAGTCAGACTTGTAT+TGG + chr6.3:46113203-46113222 None:intergenic 35.0%
GAAGATTCCTTCCTTTACAT+GGG - chr6.3:46112674-46112693 MS.gene040075:CDS 35.0%
GAAGTCCTTCAAATAAGCTA+GGG + chr6.3:46113110-46113129 None:intergenic 35.0%
GACAAAGATAATGAAGTGGA+AGG - chr6.3:46112042-46112061 MS.gene040075:CDS 35.0%
GATGATTCTGTTCCTTATGA+AGG - chr6.3:46111841-46111860 MS.gene040075:CDS 35.0%
GCGAATAGAGCAAGTAAATA+TGG + chr6.3:46113072-46113091 None:intergenic 35.0%
GGAAAACATGTTCTAATACG+AGG + chr6.3:46113397-46113416 None:intergenic 35.0%
TACCTTTATAGCCCATGTAA+AGG + chr6.3:46112688-46112707 None:intergenic 35.0%
TTAGAGAAAAACGTAGATGC+AGG - chr6.3:46112312-46112331 MS.gene040075:CDS 35.0%
TTCTGTTCCTTATGAAGGAA+AGG - chr6.3:46111846-46111865 MS.gene040075:CDS 35.0%
TTGAAAGGTCAGAGAATCAA+TGG + chr6.3:46111782-46111801 None:intergenic 35.0%
TTTATAGCCCATGTAAAGGA+AGG + chr6.3:46112684-46112703 None:intergenic 35.0%
! ATTTTGCATATGGCATATCC+TGG - chr6.3:46112895-46112914 MS.gene040075:CDS 35.0%
! CAAAGCATGCATTTTGCATA+TGG - chr6.3:46112885-46112904 MS.gene040075:CDS 35.0%
! CATGGCAATTCCATTTTCTT+TGG - chr6.3:46112630-46112649 MS.gene040075:CDS 35.0%
! CTATTCGCTTCGTCAATTTT+GGG - chr6.3:46113084-46113103 MS.gene040075:intron 35.0%
! GGTATTTAACAGTGATGATG+AGG - chr6.3:46111867-46111886 MS.gene040075:CDS 35.0%
! TCTATTCGCTTCGTCAATTT+TGG - chr6.3:46113083-46113102 MS.gene040075:intron 35.0%
! TGCAGGAAATCTTCCATTTT+TGG - chr6.3:46112329-46112348 MS.gene040075:CDS 35.0%
! TTCCTTTACATGGGCTATAA+AGG - chr6.3:46112683-46112702 MS.gene040075:CDS 35.0%
! TTCTCGTTCTTTTGTCTTCA+AGG + chr6.3:46113818-46113837 None:intergenic 35.0%
!! AAGATGATTTTGAGAGGGAA+TGG - chr6.3:46113008-46113027 MS.gene040075:CDS 35.0%
!! ACTTGGTTTTCTCTTCCATT+AGG - chr6.3:46112929-46112948 MS.gene040075:CDS 35.0%
!! CATGGCTTTAATCACTTGAA+TGG + chr6.3:46113869-46113888 None:intergenic 35.0%
!! CTTGGTTTTCTCTTCCATTA+GGG - chr6.3:46112930-46112949 MS.gene040075:CDS 35.0%
!! TGAACAGTTTTGTCTTAGCA+AGG - chr6.3:46113042-46113061 MS.gene040075:intron 35.0%
!!! TTGAAGGACTTCTTTTTTGC+TGG - chr6.3:46113118-46113137 MS.gene040075:intron 35.0%
AAAGGATCAAGGCTAAAAGG+AGG - chr6.3:46113985-46114004 MS.gene040075:CDS 40.0%
ATTCGAGCATATGAAGCCTT+CGG - chr6.3:46112528-46112547 MS.gene040075:intron 40.0%
CAGTCGGAAGATAATCCATT+AGG - chr6.3:46111970-46111989 MS.gene040075:CDS 40.0%
CATTGAGGGAAGAAATGAGT+GGG - chr6.3:46111708-46111727 MS.gene040075:CDS 40.0%
CCAAAAGGATCAAGGCTAAA+AGG - chr6.3:46113982-46114001 MS.gene040075:CDS 40.0%
CGACATCATACCAAAAGTGA+CGG - chr6.3:46113535-46113554 MS.gene040075:CDS 40.0%
GAAGAGGAAGATACTTGGAA+GGG + chr6.3:46113687-46113706 None:intergenic 40.0%
GAGCACATTATTTGGGCATT+TGG - chr6.3:46112498-46112517 MS.gene040075:intron 40.0%
TGAGAGGGAATGGAAATTGA+TGG - chr6.3:46113018-46113037 MS.gene040075:CDS 40.0%
TTTGCTGGAATGACTACAAC+TGG - chr6.3:46113133-46113152 MS.gene040075:intron 40.0%
! ATGCCTCAAGAAAAGTTGGT+GGG - chr6.3:46113886-46113905 MS.gene040075:CDS 40.0%
! TAACTCTGAGAAAAAGTGGG+TGG - chr6.3:46112131-46112150 MS.gene040075:CDS 40.0%
! TACGAGGATTGTGGTACTTT+TGG + chr6.3:46113381-46113400 None:intergenic 40.0%
! TGGTTGTGGTGCTAAATTGT+TGG - chr6.3:46112092-46112111 MS.gene040075:CDS 40.0%
! TTTGGAACATGACAATGACG+AGG + chr6.3:46114030-46114049 None:intergenic 40.0%
!! TCATCAATGTGATTGGCTTG+AGG + chr6.3:46111826-46111845 None:intergenic 40.0%
!!! CCTTTTAGCCTTGATCCTTT+TGG + chr6.3:46113985-46114004 None:intergenic 40.0%
!!! GGTCGACCTTTTGTTTTTGA+AGG + chr6.3:46113964-46113983 None:intergenic 40.0%
AAACGGAAGTCGTCAAGATG+TGG - chr6.3:46112072-46112091 MS.gene040075:CDS 45.0%
AAGGTCGACCAAAAGGATCA+AGG - chr6.3:46113974-46113993 MS.gene040075:CDS 45.0%
AAGTCGTCAAGATGTGGTTG+TGG - chr6.3:46112078-46112097 MS.gene040075:CDS 45.0%
ACCCCAACCAAAATACCAAG+CGG + chr6.3:46112603-46112622 None:intergenic 45.0%
AGCCATGCCTCAAGAAAAGT+TGG - chr6.3:46113882-46113901 MS.gene040075:CDS 45.0%
AGGAAGATACTTGGAAGGGA+GGG + chr6.3:46113683-46113702 None:intergenic 45.0%
CATCATACCAAAAGTGACGG+AGG - chr6.3:46113538-46113557 MS.gene040075:CDS 45.0%
CATGCCTCAAGAAAAGTTGG+TGG - chr6.3:46113885-46113904 MS.gene040075:CDS 45.0%
CCAACGAAGAGGAAGATACT+TGG + chr6.3:46113692-46113711 None:intergenic 45.0%
CCAAGTATCTTCCTCTTCGT+TGG - chr6.3:46113689-46113708 MS.gene040075:CDS 45.0%
CCACTCATTTCTTCCCTCAA+TGG + chr6.3:46111710-46111729 None:intergenic 45.0%
CCATTGAGGGAAGAAATGAG+TGG - chr6.3:46111707-46111726 MS.gene040075:CDS 45.0%
CGAAGAGGAAGATACTTGGA+AGG + chr6.3:46113688-46113707 None:intergenic 45.0%
CTTTCTTGTCTCCAACGAAG+AGG + chr6.3:46113703-46113722 None:intergenic 45.0%
GCTGGAATACTTCGATAAGC+AGG + chr6.3:46112219-46112238 None:intergenic 45.0%
GTGGCTCCCTTGTTAAGTTT+AGG - chr6.3:46113764-46113783 MS.gene040075:CDS 45.0%
TCATCGTATCTCGACCCTAA+TGG + chr6.3:46112947-46112966 None:intergenic 45.0%
TCCTGGCAAAGTTACCAACT+TGG - chr6.3:46112912-46112931 MS.gene040075:CDS 45.0%
TGATCAGTTCCACCGCAATT+TGG + chr6.3:46114048-46114067 None:intergenic 45.0%
TGTCATGTTCCAAATTGCGG+TGG - chr6.3:46114036-46114055 MS.gene040075:CDS 45.0%
TTGGGCCCTAGCTTATTTGA+AGG - chr6.3:46113102-46113121 MS.gene040075:intron 45.0%
TTGGTTGGGGTCGATAATCA+TGG - chr6.3:46112612-46112631 MS.gene040075:CDS 45.0%
! ACACCCACCAACTTTTCTTG+AGG + chr6.3:46113892-46113911 None:intergenic 45.0%
! CACCAACTTTTCTTGAGGCA+TGG + chr6.3:46113887-46113906 None:intergenic 45.0%
! GAGTTTGTTTGTCATCGTGC+TGG - chr6.3:46112006-46112025 MS.gene040075:CDS 45.0%
!! ACCAAGTTGGTAACTTTGCC+AGG + chr6.3:46112916-46112935 None:intergenic 45.0%
!! ATGTGATTGGCTTGAGGCAA+AGG + chr6.3:46111820-46111839 None:intergenic 45.0%
!! GTTGGTGGGTGTTGATTCTA+CGG - chr6.3:46113900-46113919 MS.gene040075:CDS 45.0%
!!! ATGCCGCTTGGTATTTTGGT+TGG - chr6.3:46112597-46112616 MS.gene040075:intron 45.0%
!!! TGCCGCTTGGTATTTTGGTT+GGG - chr6.3:46112598-46112617 MS.gene040075:intron 45.0%
AATCGTTACGACATGCCGCT+TGG - chr6.3:46112585-46112604 MS.gene040075:intron 50.0%
ACCTTTCAAGAGCCGCAACA+TGG - chr6.3:46111793-46111812 MS.gene040075:CDS 50.0%
GAGGAAGATACTTGGAAGGG+AGG + chr6.3:46113684-46113703 None:intergenic 50.0%
GATGCGGCATGTTCCTCAAT+AGG + chr6.3:46113418-46113437 None:intergenic 50.0%
GTGGAACTGATCATGACTCG+AGG - chr6.3:46114055-46114074 MS.gene040075:CDS 50.0%
TCCATGTTGCGGCTCTTGAA+AGG + chr6.3:46111797-46111816 None:intergenic 50.0%
TGAGGCAAAGGTCCATGTTG+CGG + chr6.3:46111808-46111827 None:intergenic 50.0%
!! CGACATGCCGCTTGGTATTT+TGG - chr6.3:46112593-46112612 MS.gene040075:intron 50.0%
!! TCAGACTTGTATTGGCTCCC+AGG + chr6.3:46113195-46113214 None:intergenic 50.0%
!!! GCCGCTTGGTATTTTGGTTG+GGG - chr6.3:46112599-46112618 MS.gene040075:intron 50.0%
! ACGGAGGCCGCTTTGTAAGT+TGG - chr6.3:46113554-46113573 MS.gene040075:CDS 55.0%
!! AAAGCGGCCTCCGTCACTTT+TGG + chr6.3:46113548-46113567 None:intergenic 55.0%


Chromosome Type Strat End Strand Name
chr6.3 gene 46111703 46114137 46111703 ID=MS.gene040075
chr6.3 mRNA 46111703 46114137 46111703 ID=MS.gene040075.t1;Parent=MS.gene040075
chr6.3 exon 46113136 46114137 46113136 ID=MS.gene040075.t1.exon1;Parent=MS.gene040075.t1
chr6.3 CDS 46113136 46114137 46113136 ID=cds.MS.gene040075.t1;Parent=MS.gene040075.t1
chr6.3 exon 46112609 46113052 46112609 ID=MS.gene040075.t1.exon2;Parent=MS.gene040075.t1
chr6.3 CDS 46112609 46113052 46112609 ID=cds.MS.gene040075.t1;Parent=MS.gene040075.t1
chr6.3 exon 46111703 46112515 46111703 ID=MS.gene040075.t1.exon3;Parent=MS.gene040075.t1
chr6.3 CDS 46111703 46112515 46111703 ID=cds.MS.gene040075.t1;Parent=MS.gene040075.t1
Gene Sequence

>MS.gene040075

ATGTCCATTGAGGGAAGAAATGAGTGGGTTGATGAGCTTCTTAGAGATAACAATTTAGTATATGAAGATGATGAGGCCATTGATTCTCTGACCTTTCAAGAGCCGCAACATGGACCTTTGCCTCAAGCCAATCACATTGATGATTCTGTTCCTTATGAAGGAAAGGTATTTAACAGTGATGATGAGGCTTACAACTTTTACTGTTTGTTTGCTCGAAAAAATGGTTTTTCAATTAGACGTCATCATGTTTACAAATCTATTAAGAATCAGTCGGAAGATAATCCATTAGGTGTTTATAAAAGAGAGTTTGTTTGTCATCGTGCTGGTACTATTAGCGTAGACAAAGATAATGAAGTGGAAGGTAAAAGGAAACGGAAGTCGTCAAGATGTGGTTGTGGTGCTAAATTGTTGGTGAATATAGCAACAATTAACTCTGAGAAAAAGTGGGTGGTGAAATATTTTAATAATAATCATAACCATGAGTTATTAGATGATAAAGAGGTTAAATTTCTTCCTGCTTATCGAAGTATTCCAGCTATTGATCAAGATCGTATTCTTTTGTTGTCAAAAGCTGGTTGTTCTGTTAGTTTGATAATTAGAGTGCTTGAGTTAGAGAAAAACGTAGATGCAGGAAATCTTCCATTTTTGGATAAAGACATTAGAAATTTCATTCAATCTCAAAGTGGTATTGGTAAAGAATTTGATGCTTCAAACGTTCTCAAATTATGTAAAAGTCTTAAAGATGCAGATAATGCATTTGAGTATGAATTTTCAATCGACGAAAATAACAAATTGGAGCACATTATTTGGGCATTTGGTGATTCAATTCGAGCATATGAAGCCTTCGGAGATGTGATTGTTTTTGATACCACTTATCGAATAAATCGTTACGACATGCCGCTTGGTATTTTGGTTGGGGTCGATAATCATGGCAATTCCATTTTCTTTGGTTGTGTTCTATTGCAAAATGAGAAGATTCCTTCCTTTACATGGGCTATAAAGGTACATTTCTATTTATTTGAGGTTATCATTTCTCAATAAATTTGAGTTTTTAGTAAGTTATTCTACATTTTTTGTATTTTCAGACTTTTCTTAGTTTTGTCAAAGGAAAATATCCACAAACAATTCTTACAGATCAAGATCTTGCAATGAAAGAAGCTATTGCAATGGAATTGCCAAACACAAAGCATGCATTTTGCATATGGCATATCCTGGCAAAGTTACCAACTTGGTTTTCTCTTCCATTAGGGTCGAGATACGATGATTTTAAAGATGAGTTTTATCGATTATACCATTTAGAATGTGAAGATGATTTTGAGAGGGAATGGAAATTGATGGTTGAACAGTTTTGTCTTAGCAAGGATAACCATATTTACTTGCTCTATTCGCTTCGTCAATTTTGGGCCCTAGCTTATTTGAAGGACTTCTTTTTTGCTGGAATGACTACAACTGGACGTTCAGAATCTATAAATTCATATATAAAAAGATTCCTGGGAGCCAATACAAGTCTGACTGATTTCATAAATCAAGTAAGAAATTAATTGAGTTAATTGATTTTTCTCTAGTAAGATGCATAGAATTATTAGTTTTAATTTACTAATAATTAATATATTGTTGTGCAGGTTGGGGTTGCTGTTAACATTAGAAATCAAGCTGGAGAAGAAGCAAGAATGCGCCAAAAGTACCACAATCCTCGTATTAGAACATGTTTTCCTATTGAGGAACATGCCGCATCTATTCTTACACCTTATGCCTTTAAGTTGATTCAACATGAGATTGAGTTGTCTACAAAATATGCAGCAACTGAAACTAATAATAGTGTATTCATTGTGCGACATCATACCAAAAGTGACGGAGGCCGCTTTGTAAGTTGGATACAAGAAAATGAATCAATCCATTGTTCTTGCAAGGAATTTGAATTTTCTGGGATATTATGTAGACATGCTTTTCGGGTGCTTGTGATGAAAAATTATTTTACCCTCCCTTCCAAGTATCTTCCTCTTCGTTGGAGACAAGAAAGTTCATTGATTCCAAAATCTAGTCACATGATTAACAACAATGGTGGCTCCCTTGTTAAGTTTAGGTCCTTAGTTCAATGTCTAGAAATTGAATCCTTGAAGACAAAAGAACGAGAACAAGCTGCAACTAGAGAGTTAGAGAAAGCCATTCAAGTGATTAAAGCCATGCCTCAAGAAAAGTTGGTGGGTGTTGATTCTACGGTTCCAGATAATGATGAGTTGAATGTTGAAAATCCTTTACCTTCAAAAACAAAAGGTCGACCAAAAGGATCAAGGCTAAAAGGAGGAGTTGAAATTGCAAAGAAGCCTCGTCATTGTCATGTTCCAAATTGCGGTGGAACTGATCATGACTCGAGGAATTGTCCAAATAAAAAGAAAAATATTGAAGCATTACCTTCTCAATCTCCTAATAAGTAA
Protein sequence

>MS.gene040075.t1

MSIEGRNEWVDELLRDNNLVYEDDEAIDSLTFQEPQHGPLPQANHIDDSVPYEGKVFNSDDEAYNFYCLFARKNGFSIRRHHVYKSIKNQSEDNPLGVYKREFVCHRAGTISVDKDNEVEGKRKRKSSRCGCGAKLLVNIATINSEKKWVVKYFNNNHNHELLDDKEVKFLPAYRSIPAIDQDRILLLSKAGCSVSLIIRVLELEKNVDAGNLPFLDKDIRNFIQSQSGIGKEFDASNVLKLCKSLKDADNAFEYEFSIDENNKLEHIIWAFGDSIRAYEAFGDVIVFDTTYRINRYDMPLGILVGVDNHGNSIFFGCVLLQNEKIPSFTWAIKTFLSFVKGKYPQTILTDQDLAMKEAIAMELPNTKHAFCIWHILAKLPTWFSLPLGSRYDDFKDEFYRLYHLECEDDFEREWKLMVEQFCLSKDNHIYLLYSLRQFWALAYLKDFFFAGMTTTGRSESINSYIKRFLGANTSLTDFINQVGVAVNIRNQAGEEARMRQKYHNPRIRTCFPIEEHAASILTPYAFKLIQHEIELSTKYAATETNNSVFIVRHHTKSDGGRFVSWIQENESIHCSCKEFEFSGILCRHAFRVLVMKNYFTLPSKYLPLRWRQESSLIPKSSHMINNNGGSLVKFRSLVQCLEIESLKTKEREQAATRELEKAIQVIKAMPQEKLVGVDSTVPDNDELNVENPLPSKTKGRPKGSRLKGGVEIAKKPRHCHVPNCGGTDHDSRNCPNKKKNIEALPSQSPNK