Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene040122.t1 | AEL30894.1 | 83.8 | 371 | 33 | 5 | 1 | 362 | 1 | 353 | 1.10E-154 | 556.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene040122.t1 | Q6X7K0 | 40.2 | 388 | 168 | 12 | 1 | 362 | 1 | 350 | 4.3e-38 | 160.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene040122.t1 | G0ZGT5 | 83.8 | 371 | 33 | 5 | 1 | 362 | 1 | 353 | 8.0e-155 | 556.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene040122.t1 | TF | HB-WOX |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene040122.t1 | MTR_8g107210 | 85.488 | 379 | 17 | 9 | 1 | 362 | 1 | 358 | 0.0 | 608 |
| MS.gene040122.t1 | MTR_8g095580 | 84.277 | 159 | 9 | 3 | 1 | 156 | 1 | 146 | 1.01e-89 | 267 |
| MS.gene040122.t1 | MTR_3g088485 | 81.761 | 159 | 11 | 3 | 1 | 156 | 1 | 144 | 5.80e-83 | 249 |
| MS.gene040122.t1 | MTR_4g084550 | 50.318 | 157 | 61 | 4 | 44 | 193 | 26 | 172 | 2.20e-37 | 133 |
| MS.gene040122.t1 | MTR_7g060630 | 74.627 | 67 | 17 | 0 | 90 | 156 | 6 | 72 | 3.25e-28 | 109 |
| MS.gene040122.t1 | MTR_1g019130 | 75.000 | 64 | 16 | 0 | 91 | 154 | 89 | 152 | 2.16e-27 | 108 |
| MS.gene040122.t1 | MTR_4g063735 | 63.636 | 77 | 26 | 1 | 92 | 168 | 25 | 99 | 6.90e-27 | 107 |
| MS.gene040122.t1 | MTR_1g019130 | 75.000 | 64 | 16 | 0 | 91 | 154 | 89 | 152 | 1.22e-26 | 106 |
| MS.gene040122.t1 | MTR_5g081990 | 71.429 | 63 | 18 | 0 | 92 | 154 | 33 | 95 | 7.12e-26 | 102 |
| MS.gene040122.t1 | MTR_5g021930 | 70.769 | 65 | 18 | 1 | 90 | 153 | 28 | 92 | 3.02e-25 | 103 |
| MS.gene040122.t1 | MTR_7g025010 | 50.000 | 62 | 31 | 0 | 92 | 153 | 47 | 108 | 1.25e-15 | 78.6 |
| MS.gene040122.t1 | MTR_2g015000 | 50.000 | 62 | 31 | 0 | 92 | 153 | 55 | 116 | 1.94e-15 | 77.8 |
| MS.gene040122.t1 | MTR_7g023810 | 36.170 | 94 | 60 | 0 | 92 | 185 | 68 | 161 | 3.67e-14 | 70.5 |
| MS.gene040122.t1 | MTR_4g088070 | 45.902 | 61 | 33 | 0 | 92 | 152 | 29 | 89 | 5.97e-14 | 72.8 |
| MS.gene040122.t1 | MTR_1g115315 | 39.506 | 81 | 47 | 1 | 92 | 170 | 85 | 165 | 1.10e-12 | 67.8 |
| MS.gene040122.t1 | MTR_1g115315 | 39.506 | 81 | 47 | 1 | 92 | 170 | 85 | 165 | 1.48e-12 | 67.4 |
| MS.gene040122.t1 | MTR_4g088080 | 44.262 | 61 | 34 | 0 | 92 | 152 | 40 | 100 | 3.00e-12 | 67.0 |
| MS.gene040122.t1 | MTR_3g115620 | 42.623 | 61 | 35 | 0 | 92 | 152 | 82 | 142 | 4.81e-11 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene040122.t1 | AT3G18010 | 36.634 | 404 | 160 | 14 | 1 | 362 | 1 | 350 | 7.28e-62 | 202 |
| MS.gene040122.t1 | AT2G01500 | 57.692 | 104 | 38 | 3 | 45 | 146 | 16 | 115 | 4.18e-29 | 114 |
| MS.gene040122.t1 | AT2G28610 | 71.014 | 69 | 20 | 0 | 88 | 156 | 4 | 72 | 8.83e-29 | 112 |
| MS.gene040122.t1 | AT5G59340 | 61.905 | 84 | 30 | 1 | 85 | 168 | 7 | 88 | 4.96e-28 | 110 |
| MS.gene040122.t1 | AT3G11260 | 52.000 | 100 | 42 | 2 | 81 | 180 | 13 | 106 | 2.30e-26 | 103 |
| MS.gene040122.t1 | AT1G46480 | 70.769 | 65 | 19 | 0 | 90 | 154 | 88 | 152 | 2.32e-26 | 104 |
| MS.gene040122.t1 | AT1G46480 | 70.769 | 65 | 19 | 0 | 90 | 154 | 88 | 152 | 1.86e-25 | 103 |
| MS.gene040122.t1 | AT2G17950 | 69.697 | 66 | 19 | 1 | 89 | 153 | 35 | 100 | 1.21e-24 | 102 |
| MS.gene040122.t1 | AT5G05770 | 59.459 | 74 | 28 | 1 | 90 | 163 | 27 | 98 | 2.08e-23 | 94.4 |
| MS.gene040122.t1 | AT5G45980 | 37.963 | 108 | 58 | 2 | 92 | 199 | 55 | 153 | 3.77e-16 | 79.0 |
| MS.gene040122.t1 | AT2G33880 | 50.000 | 62 | 31 | 0 | 92 | 153 | 55 | 116 | 4.46e-15 | 76.3 |
| MS.gene040122.t1 | AT2G33880 | 50.000 | 62 | 31 | 0 | 92 | 153 | 55 | 116 | 4.47e-15 | 76.3 |
| MS.gene040122.t1 | AT4G35550 | 47.541 | 61 | 32 | 0 | 92 | 152 | 99 | 159 | 5.34e-13 | 68.9 |
| MS.gene040122.t1 | AT1G20700 | 33.684 | 95 | 59 | 1 | 92 | 182 | 33 | 127 | 1.47e-11 | 62.4 |
| MS.gene040122.t1 | AT1G20700 | 33.684 | 95 | 59 | 1 | 92 | 182 | 95 | 189 | 3.42e-11 | 62.4 |
| MS.gene040122.t1 | AT1G20700 | 33.684 | 95 | 59 | 1 | 92 | 182 | 95 | 189 | 3.60e-11 | 62.8 |
| MS.gene040122.t1 | AT3G03660 | 42.029 | 69 | 40 | 0 | 75 | 143 | 16 | 84 | 4.09e-11 | 63.2 |
| MS.gene040122.t1 | AT3G03660 | 42.029 | 69 | 40 | 0 | 75 | 143 | 16 | 84 | 5.46e-11 | 63.2 |
| MS.gene040122.t1 | AT3G03660 | 42.029 | 69 | 40 | 0 | 75 | 143 | 16 | 84 | 6.87e-11 | 63.2 |
| MS.gene040122.t1 | AT3G03660 | 42.029 | 69 | 40 | 0 | 75 | 143 | 16 | 84 | 8.31e-11 | 63.2 |
| MS.gene040122.t1 | AT5G17810 | 45.455 | 55 | 30 | 0 | 89 | 143 | 18 | 72 | 8.32e-11 | 62.4 |
| MS.gene040122.t1 | AT5G17810 | 45.455 | 55 | 30 | 0 | 89 | 143 | 18 | 72 | 8.97e-11 | 62.4 |
| MS.gene040122.t1 | AT5G17810 | 45.455 | 55 | 30 | 0 | 89 | 143 | 18 | 72 | 8.97e-11 | 62.4 |
Find 77 sgRNAs with CRISPR-Local
Find 150 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCATGATCTCCATTCCTTAT+TGG | 0.159741 | 4.4:-353335 | None:intergenic |
| ACAGCAAAGAAGAAACTTTA+TGG | 0.180399 | 4.4:+353034 | MS.gene040122:CDS |
| GCCACCATGAATGCGGTTTA+AGG | 0.219928 | 4.4:-351400 | None:intergenic |
| TCATGGGTCTTGATGAGTTT+TGG | 0.224893 | 4.4:-353182 | None:intergenic |
| TCCAGTGCTCTTAACTGTTC+TGG | 0.231980 | 4.4:-351647 | None:intergenic |
| CATGATCTCCATTCCTTATT+GGG | 0.239327 | 4.4:-353334 | None:intergenic |
| ACTGCCCAGCTTAGAAAGTT+TGG | 0.297339 | 4.4:+351725 | MS.gene040122:CDS |
| GTAATTCTGCTTCATCGAAT+TGG | 0.317991 | 4.4:-353013 | None:intergenic |
| CACAGTAACAACTAGACTTA+TGG | 0.319387 | 4.4:+353157 | MS.gene040122:CDS |
| GTTATAGTTGAAGTGTTGTT+AGG | 0.334243 | 4.4:-351372 | None:intergenic |
| ACTGGGATTGGGACTGGTCT+TGG | 0.334758 | 4.4:-351336 | None:intergenic |
| TAAGCTGGGCAGTGATTTGT+TGG | 0.366393 | 4.4:-351715 | None:intergenic |
| TAGTAGTAGAGGTGTTTAAG+AGG | 0.371375 | 4.4:-353106 | None:intergenic |
| AACATGGCTGATTATCCATT+TGG | 0.372662 | 4.4:+351288 | MS.gene040122:CDS |
| CCTTCCTTAAACCGCATTCA+TGG | 0.383571 | 4.4:+351396 | MS.gene040122:CDS |
| GTGTTGTTAGGAGAAGTAGT+AGG | 0.385300 | 4.4:-351360 | None:intergenic |
| TGTAGTTGATACTGTTTAAG+TGG | 0.389042 | 4.4:-353268 | None:intergenic |
| AAGTAGTAGGGACTGGGATT+GGG | 0.391628 | 4.4:-351347 | None:intergenic |
| GAAGTAGTAGGGACTGGGAT+TGG | 0.392783 | 4.4:-351348 | None:intergenic |
| GCTCTTAACTGTTCTGGTGT+TGG | 0.418756 | 4.4:-351641 | None:intergenic |
| ACGGAAGAAACTCAATAAAC+TGG | 0.421182 | 4.4:-353442 | None:intergenic |
| GCTCTTGAAAAGAAAGACTT+AGG | 0.434053 | 4.4:+351851 | MS.gene040122:CDS |
| ATATCTCTGTCTCTTTGTGT+TGG | 0.435394 | 4.4:-353394 | None:intergenic |
| GAACTCACCACAACTGCTGC+TGG | 0.437507 | 4.4:-351608 | None:intergenic |
| CAGCAGTTGTGGTGAGTTCA+AGG | 0.440070 | 4.4:+351612 | MS.gene040122:CDS |
| AAATGAATAAGTTGAAATCA+TGG | 0.444662 | 4.4:-353199 | None:intergenic |
| CTTAGTTTCCTTCCACCAAA+TGG | 0.452550 | 4.4:-351303 | None:intergenic |
| TGTTGTTAGGAGAAGTAGTA+GGG | 0.464395 | 4.4:-351359 | None:intergenic |
| TTAGGAGAAGTAGTAGGGAC+TGG | 0.464507 | 4.4:-351354 | None:intergenic |
| TCCTTATTGGGAAAAGTTGA+AGG | 0.475905 | 4.4:-353322 | None:intergenic |
| CCAATAAGGAATGGAGATCA+TGG | 0.480192 | 4.4:+353335 | MS.gene040122:CDS |
| AGTAGTAGAGGTGTTTAAGA+GGG | 0.480755 | 4.4:-353105 | None:intergenic |
| TAGGAGAAGTAGTAGGGACT+GGG | 0.481067 | 4.4:-351353 | None:intergenic |
| TCTAGTTGTTACTGTGGTTG+TGG | 0.492333 | 4.4:-353150 | None:intergenic |
| CAGCAGCTGATTCCATTTGA+CGG | 0.494340 | 4.4:-351817 | None:intergenic |
| AGAAACTCAATAAACTGGTT+GGG | 0.503624 | 4.4:-353437 | None:intergenic |
| AAGAAACTCAATAAACTGGT+TGG | 0.507314 | 4.4:-353438 | None:intergenic |
| GTAGGGACTGGGATTGGGAC+TGG | 0.512217 | 4.4:-351342 | None:intergenic |
| ACCAGAACAGTTAAGAGCAC+TGG | 0.518122 | 4.4:+351646 | MS.gene040122:CDS |
| AGAATCACAAAGCTAGAGAA+AGG | 0.519499 | 4.4:+351783 | MS.gene040122:CDS |
| ATGGCTGATTATCCATTTGG+TGG | 0.524166 | 4.4:+351291 | MS.gene040122:CDS |
| CTGATTATCCATTTGGTGGA+AGG | 0.529117 | 4.4:+351295 | MS.gene040122:CDS |
| TGTTGGATTTGTTCAGCAGA+AGG | 0.532776 | 4.4:-351698 | None:intergenic |
| GTAGAGGTGTTTAAGAGGGT+AGG | 0.534985 | 4.4:-353101 | None:intergenic |
| GGGACTGGTCTTGGCATGAG+AGG | 0.545613 | 4.4:-351327 | None:intergenic |
| GATCAGTACTCTAGAACAGA+TGG | 0.548364 | 4.4:+352984 | MS.gene040122:intron |
| AAAGAAGAAACTTTATGGAA+AGG | 0.550327 | 4.4:+353039 | MS.gene040122:CDS |
| CATTTGGTGGAAGGAAACTA+AGG | 0.551936 | 4.4:+351304 | MS.gene040122:CDS |
| TAATAATCCAGCAGCAGTTG+TGG | 0.553191 | 4.4:+351601 | MS.gene040122:CDS |
| AAGAGGAAGAGTACTGGTAC+TGG | 0.555814 | 4.4:-352091 | None:intergenic |
| CCTTATTGGGAAAAGTTGAA+GGG | 0.559443 | 4.4:-353321 | None:intergenic |
| TGGATGGTGGGTTACAATGA+AGG | 0.562024 | 4.4:+351255 | MS.gene040122:CDS |
| CTGGAAGAATTGTATAGAAG+AGG | 0.567704 | 4.4:+351665 | MS.gene040122:CDS |
| CATAAGTCTAGTTGTTACTG+TGG | 0.571838 | 4.4:-353156 | None:intergenic |
| AGTTGTTACTGTGGTTGTGG+TGG | 0.572763 | 4.4:-353147 | None:intergenic |
| CTCTGCAAGAGGAAGAGTAC+TGG | 0.573556 | 4.4:-352097 | None:intergenic |
| AATGAATAAGTTGAAATCAT+GGG | 0.576972 | 4.4:-353198 | None:intergenic |
| CCATGAATGCGGTTTAAGGA+AGG | 0.585809 | 4.4:-351396 | None:intergenic |
| AGCTGTTGTTGTAGTAGTAG+AGG | 0.590786 | 4.4:-353117 | None:intergenic |
| GAATTATAGACCTCTGCAAG+AGG | 0.592853 | 4.4:-352108 | None:intergenic |
| TTGTAGTTGTAGTATGTGTG+AGG | 0.596125 | 4.4:-353224 | None:intergenic |
| CAGTACTCTTCCTCTTGCAG+AGG | 0.600602 | 4.4:+352098 | MS.gene040122:CDS |
| TACTACAACAACAGCTAGCG+TGG | 0.607035 | 4.4:+353124 | MS.gene040122:CDS |
| ACTGGTACTGGAATTTGTAG+AGG | 0.614002 | 4.4:-352079 | None:intergenic |
| ATGGTGGGTTACAATGAAGG+TGG | 0.633455 | 4.4:+351258 | MS.gene040122:CDS |
| CTGGTACTGGAATTTGTAGA+GGG | 0.635755 | 4.4:-352078 | None:intergenic |
| AGTTGACAACATGTGGATGG+TGG | 0.636173 | 4.4:+351242 | None:intergenic |
| AATCATTGCCACCATGAATG+CGG | 0.641369 | 4.4:-351407 | None:intergenic |
| AGTACTCTAGAACAGATGGA+TGG | 0.652013 | 4.4:+352988 | MS.gene040122:intron |
| TCCTTAAACCGCATTCATGG+TGG | 0.652436 | 4.4:+351399 | MS.gene040122:CDS |
| CATCACAATCTGCAGCAGCA+AGG | 0.652597 | 4.4:+351444 | MS.gene040122:CDS |
| GTTGACAACATGTGGATGGT+GGG | 0.672963 | 4.4:+351243 | None:intergenic |
| CCTAGTTGACAACATGTGGA+TGG | 0.687638 | 4.4:+351239 | None:intergenic |
| TGAAGGTGGTGAGTTCAACA+TGG | 0.718834 | 4.4:+351272 | MS.gene040122:CDS |
| CAGTTGTGGTGAGTTCAAGG+TGG | 0.724586 | 4.4:+351615 | MS.gene040122:CDS |
| TTATGGAAAGGAATGCCACG+TGG | 0.750564 | 4.4:+353051 | MS.gene040122:CDS |
| TAACTGCATCATATGCCACG+TGG | 0.781883 | 4.4:-353066 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATAAAATAAAATAAAAAA+AGG | - | chr4.4:352714-352733 | None:intergenic | 0.0% |
| !! | TAAAATAAAATAAAAAAAGG+TGG | - | chr4.4:352711-352730 | None:intergenic | 10.0% |
| !! | AGGTAAGAAAAAAAAAAAAA+AGG | - | chr4.4:352784-352803 | None:intergenic | 15.0% |
| !! | CATATATATACAAACAATAT+TGG | - | chr4.4:351510-351529 | None:intergenic | 15.0% |
| !! | GAAAGAAAGAATTTAATTAA+AGG | - | chr4.4:352896-352915 | None:intergenic | 15.0% |
| !! | GGTAAGAAAAAAAAAAAAAA+GGG | - | chr4.4:352783-352802 | None:intergenic | 15.0% |
| !! | GTAAGAAAAAAAAAAAAAAG+GGG | - | chr4.4:352782-352801 | None:intergenic | 15.0% |
| !! | TTTAAGGAATAATAATCATA+AGG | + | chr4.4:352246-352265 | MS.gene040122:intron | 15.0% |
| !!! | TTTTTTTTTTTTCTTACCTA+TGG | + | chr4.4:352785-352804 | MS.gene040122:intron | 15.0% |
| !! | AAAAAACAAAAACTAACCAT+AGG | - | chr4.4:352804-352823 | None:intergenic | 20.0% |
| !! | AGAAAAGAAAAGAAAAGAAA+AGG | + | chr4.4:352414-352433 | MS.gene040122:intron | 20.0% |
| !! | TTTCATAGAAAGAAGAATAA+TGG | - | chr4.4:352623-352642 | None:intergenic | 20.0% |
| !!! | AAATGAATAAGTTGAAATCA+TGG | - | chr4.4:353202-353221 | None:intergenic | 20.0% |
| !!! | AATGAATAAGTTGAAATCAT+GGG | - | chr4.4:353201-353220 | None:intergenic | 20.0% |
| !!! | ATTATTCCTTAAAGACTTTT+TGG | - | chr4.4:352239-352258 | None:intergenic | 20.0% |
| !!! | GCAAGGTATTATATAATATA+TGG | + | chr4.4:351461-351480 | MS.gene040122:intron | 20.0% |
| ! | AAAAGAGATATGTATTTGTC+TGG | - | chr4.4:352195-352214 | None:intergenic | 25.0% |
| ! | AAAGAAGAAACTTTATGGAA+AGG | + | chr4.4:353039-353058 | MS.gene040122:CDS | 25.0% |
| ! | AAATAAAAAAAGGTGGATGT+TGG | - | chr4.4:352704-352723 | None:intergenic | 25.0% |
| ! | AGAAAGTTTGGAAAAATTGA+AGG | + | chr4.4:351737-351756 | MS.gene040122:CDS | 25.0% |
| ! | CTGTAATTATTTAGTGTTAG+AGG | + | chr4.4:351888-351907 | MS.gene040122:intron | 25.0% |
| ! | TGTAGTAGTATGTACTAATA+AGG | - | chr4.4:351919-351938 | None:intergenic | 25.0% |
| !! | AAGGCAAAAATGTTTTCTAT+TGG | + | chr4.4:351756-351775 | MS.gene040122:CDS | 25.0% |
| !! | TGATATGTTTTATCATGAGT+AGG | + | chr4.4:351551-351570 | MS.gene040122:intron | 25.0% |
| !!! | AATTTGTTGGGAAATGAAAA+GGG | + | chr4.4:352449-352468 | MS.gene040122:intron | 25.0% |
| !!! | ACTTTTTGGTGATTGATTAA+GGG | - | chr4.4:352225-352244 | None:intergenic | 25.0% |
| !!! | AGTAGTATTTTTTTGAGTTG+AGG | + | chr4.4:352846-352865 | MS.gene040122:intron | 25.0% |
| !!! | TAATTTGTTGGGAAATGAAA+AGG | + | chr4.4:352448-352467 | MS.gene040122:intron | 25.0% |
| !!! | TTGTTTTTCTTTTTGTCAAC+AGG | + | chr4.4:352009-352028 | MS.gene040122:intron | 25.0% |
| !!! | TTTCCTTGTAGTAATTTGTT+GGG | + | chr4.4:352437-352456 | MS.gene040122:intron | 25.0% |
| AAGAAACTCAATAAACTGGT+TGG | - | chr4.4:353441-353460 | None:intergenic | 30.0% | |
| ACAGCAAAGAAGAAACTTTA+TGG | + | chr4.4:353034-353053 | MS.gene040122:CDS | 30.0% | |
| AGAAACTCAATAAACTGGTT+GGG | - | chr4.4:353440-353459 | None:intergenic | 30.0% | |
| AGGAATCTGTTTCAATTCAA+AGG | + | chr4.4:352931-352950 | MS.gene040122:intron | 30.0% | |
| ATAATGCACAAACTAGGTAT+AGG | + | chr4.4:352361-352380 | MS.gene040122:intron | 30.0% | |
| ATACTACTAAATAACGTGTG+AGG | - | chr4.4:352834-352853 | None:intergenic | 30.0% | |
| CAATCACCAAAAAGTCTTTA+AGG | + | chr4.4:352230-352249 | MS.gene040122:intron | 30.0% | |
| CAGTAAATAATGCACAAACT+AGG | + | chr4.4:352355-352374 | MS.gene040122:intron | 30.0% | |
| CTTTCTTTCTTTCTTTCTAC+AGG | + | chr4.4:352911-352930 | MS.gene040122:intron | 30.0% | |
| GGAATCTGTTTCAATTCAAA+GGG | + | chr4.4:352932-352951 | MS.gene040122:intron | 30.0% | |
| GTGAAGTCAAATTAAAGCAA+GGG | - | chr4.4:352676-352695 | None:intergenic | 30.0% | |
| TAAATAACGTGTGAGGAAAA+AGG | - | chr4.4:352827-352846 | None:intergenic | 30.0% | |
| TAATGCACAAACTAGGTATA+GGG | + | chr4.4:352362-352381 | MS.gene040122:intron | 30.0% | |
| TCATTCATTCGTATTGTTGT+TGG | + | chr4.4:351961-351980 | MS.gene040122:intron | 30.0% | |
| TGTGAAGTCAAATTAAAGCA+AGG | - | chr4.4:352677-352696 | None:intergenic | 30.0% | |
| TTTCCCAACAAATTACTACA+AGG | - | chr4.4:352443-352462 | None:intergenic | 30.0% | |
| ! | GAAAGAAGAATAATGGAGAT+AGG | - | chr4.4:352616-352635 | None:intergenic | 30.0% |
| ! | GTTTCCTTGTAGTAATTTGT+TGG | + | chr4.4:352436-352455 | MS.gene040122:intron | 30.0% |
| ! | GTTTTCATCTCATACTCATA+CGG | + | chr4.4:352868-352887 | MS.gene040122:intron | 30.0% |
| ! | TGTAGTTGATACTGTTTAAG+TGG | - | chr4.4:353271-353290 | None:intergenic | 30.0% |
| ! | TTTTCCAAACTTTCTAAGCT+GGG | - | chr4.4:351732-351751 | None:intergenic | 30.0% |
| ! | TTTTTCCAAACTTTCTAAGC+TGG | - | chr4.4:351733-351752 | None:intergenic | 30.0% |
| !! | GACTTTTTGGTGATTGATTA+AGG | - | chr4.4:352226-352245 | None:intergenic | 30.0% |
| !! | GTTATAGTTGAAGTGTTGTT+AGG | - | chr4.4:351375-351394 | None:intergenic | 30.0% |
| AACATGGCTGATTATCCATT+TGG | + | chr4.4:351288-351307 | MS.gene040122:CDS | 35.0% | |
| AAGTTGAACACACCAAAAAC+TGG | + | chr4.4:352052-352071 | MS.gene040122:CDS | 35.0% | |
| ACGGAAGAAACTCAATAAAC+TGG | - | chr4.4:353445-353464 | None:intergenic | 35.0% | |
| AGAATCACAAAGCTAGAGAA+AGG | + | chr4.4:351783-351802 | MS.gene040122:CDS | 35.0% | |
| AGGTATAGGGAAAGTAAGAA+AGG | + | chr4.4:352375-352394 | MS.gene040122:intron | 35.0% | |
| ATATCTCTGTCTCTTTGTGT+TGG | - | chr4.4:353397-353416 | None:intergenic | 35.0% | |
| CACAGTAACAACTAGACTTA+TGG | + | chr4.4:353157-353176 | MS.gene040122:CDS | 35.0% | |
| CATAAGTCTAGTTGTTACTG+TGG | - | chr4.4:353159-353178 | None:intergenic | 35.0% | |
| CATGATCTCCATTCCTTATT+GGG | - | chr4.4:353337-353356 | None:intergenic | 35.0% | |
| CCTTATTGGGAAAAGTTGAA+GGG | - | chr4.4:353324-353343 | None:intergenic | 35.0% | |
| CTGGAAGAATTGTATAGAAG+AGG | + | chr4.4:351665-351684 | MS.gene040122:CDS | 35.0% | |
| GCTCTTGAAAAGAAAGACTT+AGG | + | chr4.4:351851-351870 | MS.gene040122:CDS | 35.0% | |
| GTAATTCTGCTTCATCGAAT+TGG | - | chr4.4:353016-353035 | None:intergenic | 35.0% | |
| GTACATACTACTACATGACA+TGG | + | chr4.4:351924-351943 | MS.gene040122:intron | 35.0% | |
| TATAATCAGTGCTTAGTGAG+TGG | - | chr4.4:352280-352299 | None:intergenic | 35.0% | |
| TCCTTATTGGGAAAAGTTGA+AGG | - | chr4.4:353325-353344 | None:intergenic | 35.0% | |
| TGCTGTTATGAAACTTAGCT+GGG | + | chr4.4:352507-352526 | MS.gene040122:intron | 35.0% | |
| TGGTGATTGATTAAGGGAAA+AGG | - | chr4.4:352219-352238 | None:intergenic | 35.0% | |
| TGTTGTTAGGAGAAGTAGTA+GGG | - | chr4.4:351362-351381 | None:intergenic | 35.0% | |
| TTGTAGTTGTAGTATGTGTG+AGG | - | chr4.4:353227-353246 | None:intergenic | 35.0% | |
| ! | AAAAAAAAGGGGCATATGCA+CGG | - | chr4.4:352771-352790 | None:intergenic | 35.0% |
| ! | AAGTCAAGTCAGTAGCTTTT+GGG | + | chr4.4:352580-352599 | MS.gene040122:intron | 35.0% |
| ! | CAACTTTTCCCAATAAGGAA+TGG | + | chr4.4:353326-353345 | MS.gene040122:CDS | 35.0% |
| ! | TAAGAAAGGAGCATACTAGT+AGG | + | chr4.4:352389-352408 | MS.gene040122:intron | 35.0% |
| !! | AGTAGTAGAGGTGTTTAAGA+GGG | - | chr4.4:353108-353127 | None:intergenic | 35.0% |
| !! | TAGTAGTAGAGGTGTTTAAG+AGG | - | chr4.4:353109-353128 | None:intergenic | 35.0% |
| AATCATTGCCACCATGAATG+CGG | - | chr4.4:351410-351429 | None:intergenic | 40.0% | |
| AGCTGTTGTTGTAGTAGTAG+AGG | - | chr4.4:353120-353139 | None:intergenic | 40.0% | |
| ATGGCTGATTATCCATTTGG+TGG | + | chr4.4:351291-351310 | MS.gene040122:CDS | 40.0% | |
| CCAATAAGGAATGGAGATCA+TGG | + | chr4.4:353335-353354 | MS.gene040122:CDS | 40.0% | |
| CCATGATCTCCATTCCTTAT+TGG | - | chr4.4:353338-353357 | None:intergenic | 40.0% | |
| CTGCTGTTATGAAACTTAGC+TGG | + | chr4.4:352506-352525 | MS.gene040122:intron | 40.0% | |
| CTTAGTTTCCTTCCACCAAA+TGG | - | chr4.4:351306-351325 | None:intergenic | 40.0% | |
| GAATTATAGACCTCTGCAAG+AGG | - | chr4.4:352111-352130 | None:intergenic | 40.0% | |
| TAATAATCCAGCAGCAGTTG+TGG | + | chr4.4:351601-351620 | MS.gene040122:CDS | 40.0% | |
| TCTAGTTGTTACTGTGGTTG+TGG | - | chr4.4:353153-353172 | None:intergenic | 40.0% | |
| ! | ACTGGTACTGGAATTTGTAG+AGG | - | chr4.4:352082-352101 | None:intergenic | 40.0% |
| ! | ATGAAACTTAGCTGGGCTTT+TGG | + | chr4.4:352514-352533 | MS.gene040122:intron | 40.0% |
| ! | CAAGTCAAGTCAGTAGCTTT+TGG | + | chr4.4:352579-352598 | MS.gene040122:intron | 40.0% |
| ! | CATGGGTCTTGATGAGTTTT+GGG | - | chr4.4:353184-353203 | None:intergenic | 40.0% |
| ! | CATTTGGTGGAAGGAAACTA+AGG | + | chr4.4:351304-351323 | MS.gene040122:CDS | 40.0% |
| ! | CCCTTCAACTTTTCCCAATA+AGG | + | chr4.4:353321-353340 | MS.gene040122:CDS | 40.0% |
| ! | CTGATTATCCATTTGGTGGA+AGG | + | chr4.4:351295-351314 | MS.gene040122:CDS | 40.0% |
| ! | CTGGTACTGGAATTTGTAGA+GGG | - | chr4.4:352081-352100 | None:intergenic | 40.0% |
| ! | GTGTTGTTAGGAGAAGTAGT+AGG | - | chr4.4:351363-351382 | None:intergenic | 40.0% |
| ! | TCATGGGTCTTGATGAGTTT+TGG | - | chr4.4:353185-353204 | None:intergenic | 40.0% |
| ! | TGAAACTTAGCTGGGCTTTT+GGG | + | chr4.4:352515-352534 | MS.gene040122:intron | 40.0% |
| ! | TGTTGGATTTGTTCAGCAGA+AGG | - | chr4.4:351701-351720 | None:intergenic | 40.0% |
| !! | AGTACTCTAGAACAGATGGA+TGG | + | chr4.4:352988-353007 | MS.gene040122:intron | 40.0% |
| !! | GATCAGTACTCTAGAACAGA+TGG | + | chr4.4:352984-353003 | MS.gene040122:intron | 40.0% |
| !!! | AAGCAAGGGTTGTCTTGTTT+TGG | - | chr4.4:352662-352681 | None:intergenic | 40.0% |
| AAGTAGTAGGGACTGGGATT+GGG | - | chr4.4:351350-351369 | None:intergenic | 45.0% | |
| ACTGCCCAGCTTAGAAAGTT+TGG | + | chr4.4:351725-351744 | MS.gene040122:CDS | 45.0% | |
| AGTTGTTACTGTGGTTGTGG+TGG | - | chr4.4:353150-353169 | None:intergenic | 45.0% | |
| CCATGAATGCGGTTTAAGGA+AGG | - | chr4.4:351399-351418 | None:intergenic | 45.0% | |
| CCTTCCTTAAACCGCATTCA+TGG | + | chr4.4:351396-351415 | MS.gene040122:CDS | 45.0% | |
| GCTCTTAACTGTTCTGGTGT+TGG | - | chr4.4:351644-351663 | None:intergenic | 45.0% | |
| TAACTGCATCATATGCCACG+TGG | - | chr4.4:353069-353088 | None:intergenic | 45.0% | |
| TACTACAACAACAGCTAGCG+TGG | + | chr4.4:353124-353143 | MS.gene040122:CDS | 45.0% | |
| TAGGAGAAGTAGTAGGGACT+GGG | - | chr4.4:351356-351375 | None:intergenic | 45.0% | |
| TCCAGTGCTCTTAACTGTTC+TGG | - | chr4.4:351650-351669 | None:intergenic | 45.0% | |
| TCCTTAAACCGCATTCATGG+TGG | + | chr4.4:351399-351418 | MS.gene040122:CDS | 45.0% | |
| TGAAGGTGGTGAGTTCAACA+TGG | + | chr4.4:351272-351291 | MS.gene040122:CDS | 45.0% | |
| TTAGGAGAAGTAGTAGGGAC+TGG | - | chr4.4:351357-351376 | None:intergenic | 45.0% | |
| TTATGGAAAGGAATGCCACG+TGG | + | chr4.4:353051-353070 | MS.gene040122:CDS | 45.0% | |
| ! | AAGGAGGGAATGCAGCTTTT+AGG | - | chr4.4:352476-352495 | None:intergenic | 45.0% |
| ! | ACCAGAACAGTTAAGAGCAC+TGG | + | chr4.4:351646-351665 | MS.gene040122:CDS | 45.0% |
| ! | CAGCAGCTGATTCCATTTGA+CGG | - | chr4.4:351820-351839 | None:intergenic | 45.0% |
| ! | GAAACTTAGCTGGGCTTTTG+GGG | + | chr4.4:352516-352535 | MS.gene040122:intron | 45.0% |
| ! | TAAGCTGGGCAGTGATTTGT+TGG | - | chr4.4:351718-351737 | None:intergenic | 45.0% |
| ! | TGTAGAGGGTAGCCAGTTTT+TGG | - | chr4.4:352067-352086 | None:intergenic | 45.0% |
| ! | TTTTGTCAACAGGCGCAAGT+AGG | + | chr4.4:352019-352038 | MS.gene040122:intron | 45.0% |
| !! | AAGAGGAAGAGTACTGGTAC+TGG | - | chr4.4:352094-352113 | None:intergenic | 45.0% |
| !! | ATGGTGGGTTACAATGAAGG+TGG | + | chr4.4:351258-351277 | MS.gene040122:CDS | 45.0% |
| !! | GTAGAGGTGTTTAAGAGGGT+AGG | - | chr4.4:353104-353123 | None:intergenic | 45.0% |
| !! | TGGATGGTGGGTTACAATGA+AGG | + | chr4.4:351255-351274 | MS.gene040122:CDS | 45.0% |
| !!! | CAAGGGTTGTCTTGTTTTGG+TGG | - | chr4.4:352659-352678 | None:intergenic | 45.0% |
| CAGCAGTTGTGGTGAGTTCA+AGG | + | chr4.4:351612-351631 | MS.gene040122:CDS | 50.0% | |
| CAGTACTCTTCCTCTTGCAG+AGG | + | chr4.4:352098-352117 | MS.gene040122:CDS | 50.0% | |
| CAGTTGTGGTGAGTTCAAGG+TGG | + | chr4.4:351615-351634 | MS.gene040122:CDS | 50.0% | |
| CATCACAATCTGCAGCAGCA+AGG | + | chr4.4:351444-351463 | MS.gene040122:CDS | 50.0% | |
| CTGCATTCCCTCCTTTCTGT+CGG | + | chr4.4:352481-352500 | MS.gene040122:intron | 50.0% | |
| GAAGTAGTAGGGACTGGGAT+TGG | - | chr4.4:351351-351370 | None:intergenic | 50.0% | |
| GCAAAAACGACGCCGTCAAA+TGG | + | chr4.4:351805-351824 | MS.gene040122:CDS | 50.0% | |
| GCCACCATGAATGCGGTTTA+AGG | - | chr4.4:351403-351422 | None:intergenic | 50.0% | |
| TGCATTCCCTCCTTTCTGTC+GGG | + | chr4.4:352482-352501 | MS.gene040122:intron | 50.0% | |
| ! | CTCTGCAAGAGGAAGAGTAC+TGG | - | chr4.4:352100-352119 | None:intergenic | 50.0% |
| GAACTCACCACAACTGCTGC+TGG | - | chr4.4:351611-351630 | None:intergenic | 55.0% | |
| GCATTCCCTCCTTTCTGTCG+GGG | + | chr4.4:352483-352502 | MS.gene040122:intron | 55.0% | |
| TAACAGCAGCCCCGACAGAA+AGG | - | chr4.4:352495-352514 | None:intergenic | 55.0% | |
| !! | ACTGGGATTGGGACTGGTCT+TGG | - | chr4.4:351339-351358 | None:intergenic | 55.0% |
| AGCAGCCCCGACAGAAAGGA+GGG | - | chr4.4:352491-352510 | None:intergenic | 60.0% | |
| GTAGGGACTGGGATTGGGAC+TGG | - | chr4.4:351345-351364 | None:intergenic | 60.0% | |
| TCAAAGGGCAGCAGCAGCAG+CGG | + | chr4.4:352947-352966 | MS.gene040122:intron | 60.0% | |
| !! | GGGACTGGTCTTGGCATGAG+AGG | - | chr4.4:351330-351349 | None:intergenic | 60.0% |
| CAGCAGCCCCGACAGAAAGG+AGG | - | chr4.4:352492-352511 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 351252 | 353475 | 351252 | ID=MS.gene040122 |
| chr4.4 | mRNA | 351252 | 353475 | 351252 | ID=MS.gene040122.t1;Parent=MS.gene040122 |
| chr4.4 | exon | 351252 | 351465 | 351252 | ID=MS.gene040122.t1.exon1;Parent=MS.gene040122.t1 |
| chr4.4 | CDS | 351252 | 351465 | 351252 | ID=cds.MS.gene040122.t1;Parent=MS.gene040122.t1 |
| chr4.4 | exon | 351573 | 351872 | 351573 | ID=MS.gene040122.t1.exon2;Parent=MS.gene040122.t1 |
| chr4.4 | CDS | 351573 | 351872 | 351573 | ID=cds.MS.gene040122.t1;Parent=MS.gene040122.t1 |
| chr4.4 | exon | 352031 | 352119 | 352031 | ID=MS.gene040122.t1.exon3;Parent=MS.gene040122.t1 |
| chr4.4 | CDS | 352031 | 352119 | 352031 | ID=cds.MS.gene040122.t1;Parent=MS.gene040122.t1 |
| chr4.4 | exon | 352990 | 353475 | 352990 | ID=MS.gene040122.t1.exon4;Parent=MS.gene040122.t1 |
| chr4.4 | CDS | 352990 | 353475 | 352990 | ID=cds.MS.gene040122.t1;Parent=MS.gene040122.t1 |
| Gene Sequence |
| Protein sequence |
