AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene040136

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene040136.t1 MTR_8g106960 60.099 406 95 5 1 346 184 582 3.21e-160 462
MS.gene040136.t1 MTR_8g106960 61.347 401 98 6 1 346 184 582 5.62e-160 461
MS.gene040136.t1 MTR_6g079470 56.642 399 114 9 1 346 155 547 7.34e-141 411
MS.gene040136.t1 MTR_2g021330 64.419 267 58 1 1 230 91 357 2.99e-127 371
MS.gene040136.t1 MTR_2g021330 64.419 267 58 1 1 230 91 357 2.03e-125 372
MS.gene040136.t1 MTR_4g117490 65.283 265 55 1 1 228 91 355 8.26e-124 365
MS.gene040136.t1 MTR_4g117490 64.794 267 57 1 1 230 91 357 8.86e-124 367
MS.gene040136.t1 MTR_2g072840 62.547 267 63 2 1 230 91 357 3.37e-118 351
MS.gene040136.t1 MTR_2g072840 62.547 267 63 2 1 230 1 267 4.85e-118 351
MS.gene040136.t1 MTR_3g089510 61.798 267 65 2 1 230 91 357 6.66e-118 354
MS.gene040136.t1 MTR_3g089510 61.798 267 65 2 1 230 79 345 7.73e-118 353
MS.gene040136.t1 MTR_8g461040 62.921 267 62 1 1 230 92 358 1.36e-117 352
MS.gene040136.t1 MTR_2g072840 62.547 267 63 2 1 230 91 357 3.03e-117 352
MS.gene040136.t1 MTR_5g091680 59.551 267 71 2 1 230 88 354 1.60e-114 340
MS.gene040136.t1 MTR_5g091680 59.551 267 71 2 1 230 88 354 3.76e-114 340
MS.gene040136.t1 MTR_5g091680 59.551 267 71 2 1 230 86 352 3.86e-114 341
MS.gene040136.t1 MTR_5g091680 59.551 267 71 2 1 230 88 354 4.67e-114 340
MS.gene040136.t1 MTR_8g106970 59.031 227 37 6 29 230 73 268 6.19e-75 234
MS.gene040136.t1 MTR_4g061320 45.149 268 103 4 3 233 108 368 3.98e-74 234
MS.gene040136.t1 MTR_4g087620 44.906 265 102 6 1 228 120 377 2.59e-73 232
MS.gene040136.t1 MTR_5g010030 44.528 265 103 4 3 230 109 366 1.07e-72 230
MS.gene040136.t1 MTR_7g078690 43.609 266 104 5 3 230 106 363 1.70e-70 224
MS.gene040136.t1 MTR_8g028720 43.019 265 107 4 3 230 105 362 2.49e-68 219
MS.gene040136.t1 MTR_8g098845 42.264 265 109 5 3 230 120 377 7.26e-67 216
MS.gene040136.t1 MTR_3g112210 39.852 271 111 6 1 230 98 357 1.13e-62 204
MS.gene040136.t1 MTR_4g061130 40.449 267 100 6 3 232 107 351 1.83e-60 198
MS.gene040136.t1 MTR_8g086000 42.795 229 90 4 1 192 98 322 1.97e-58 193
MS.gene040136.t1 MTR_8g086000 42.795 229 90 4 1 192 141 365 3.28e-58 194
MS.gene040136.t1 MTR_3g460950 42.857 231 86 4 1 192 98 321 4.87e-58 192
MS.gene040136.t1 MTR_3g060330 42.857 231 86 4 1 192 98 321 4.87e-58 192
MS.gene040136.t1 MTR_4g087620 54.777 157 65 3 1 156 120 271 1.09e-57 188
MS.gene040136.t1 MTR_3g060390 35.424 271 106 7 1 230 81 323 1.76e-44 155
MS.gene040136.t1 MTR_3g460980 35.741 263 100 7 9 230 93 327 4.37e-43 152
MS.gene040136.t1 MTR_8g012450 35.242 227 93 7 7 190 70 285 9.41e-37 137
MS.gene040136.t1 MTR_8g012450 35.586 222 99 6 7 190 70 285 2.58e-36 136
MS.gene040136.t1 MTR_4g103810 37.054 224 91 5 13 191 185 403 1.18e-35 134
MS.gene040136.t1 MTR_8g071230 34.545 220 101 5 7 189 70 283 2.13e-35 134
MS.gene040136.t1 MTR_4g103810 37.054 224 91 5 13 191 295 513 2.27e-35 135
MS.gene040136.t1 MTR_4g094430 35.556 225 101 7 10 195 74 293 6.30e-34 127
MS.gene040136.t1 MTR_5g026960 33.032 221 105 5 7 190 70 284 1.56e-33 129
MS.gene040136.t1 MTR_2g032060 36.000 225 100 7 10 195 74 293 1.69e-33 125
MS.gene040136.t1 MTR_1g075610 35.841 226 100 7 12 197 96 316 3.09e-33 125
MS.gene040136.t1 MTR_1g086370 36.036 222 96 7 14 194 29 245 4.87e-33 124
MS.gene040136.t1 MTR_2g016490 34.510 255 119 9 14 225 113 362 7.51e-33 126
MS.gene040136.t1 MTR_1g086370 36.036 222 96 7 14 194 115 331 1.31e-32 125
MS.gene040136.t1 MTR_1g086370 36.036 222 96 7 14 194 148 364 1.85e-32 125
MS.gene040136.t1 MTR_3g040810 35.537 242 113 8 12 215 111 347 2.49e-32 127
MS.gene040136.t1 MTR_4g109090 33.200 250 119 7 12 217 31 276 3.17e-32 126
MS.gene040136.t1 MTR_3g040520 35.537 242 113 8 12 215 113 349 3.23e-32 126
MS.gene040136.t1 MTR_4g109090 33.200 250 119 7 12 217 179 424 6.33e-32 126
MS.gene040136.t1 MTR_8g461270 35.111 225 95 8 12 192 121 338 1.58e-31 122
MS.gene040136.t1 MTR_3g085650 35.841 226 95 6 12 192 490 710 2.40e-31 125
MS.gene040136.t1 MTR_2g083940 33.333 255 122 9 14 225 107 356 2.56e-31 122
MS.gene040136.t1 MTR_3g085650 35.841 226 95 6 12 192 490 710 2.57e-31 125
MS.gene040136.t1 MTR_3g085650 35.841 226 95 6 12 192 490 710 3.35e-31 125
MS.gene040136.t1 MTR_8g432510 32.692 260 113 10 14 223 212 459 5.48e-31 122
MS.gene040136.t1 MTR_2g083940 33.333 255 122 9 14 225 161 410 5.57e-31 122
MS.gene040136.t1 MTR_8g080190 35.398 226 96 6 12 192 459 679 6.55e-31 124
MS.gene040136.t1 MTR_7g110060 35.586 222 97 7 14 194 148 364 1.45e-30 120
MS.gene040136.t1 MTR_3g085650 45.033 151 76 4 12 160 490 635 8.80e-30 120
MS.gene040136.t1 MTR_6g080470 33.953 215 101 5 11 189 85 294 1.08e-29 118
MS.gene040136.t1 MTR_1g084760 33.784 222 101 6 14 194 148 364 1.39e-29 117
MS.gene040136.t1 MTR_4g007750 35.426 223 97 7 12 192 89 306 1.78e-29 115
MS.gene040136.t1 MTR_6g013030 32.443 262 130 7 5 223 177 434 2.07e-29 119
MS.gene040136.t1 MTR_7g076030 30.682 264 131 10 5 222 96 353 4.99e-29 115
MS.gene040136.t1 MTR_8g080190 43.709 151 78 4 12 160 459 604 5.75e-29 118
MS.gene040136.t1 MTR_7g011800 34.545 220 100 6 10 190 192 406 6.59e-29 118
MS.gene040136.t1 MTR_3g098760 35.349 215 98 6 12 189 171 381 8.52e-29 117
MS.gene040136.t1 MTR_3g096960 32.068 237 99 7 12 189 95 328 1.02e-28 116
MS.gene040136.t1 MTR_4g118780 32.932 249 126 6 12 224 178 421 1.27e-28 116
MS.gene040136.t1 MTR_5g008860 33.636 220 105 5 7 189 209 424 1.60e-28 116
MS.gene040136.t1 MTR_1g098300 39.779 181 99 6 12 186 200 376 1.70e-28 116
MS.gene040136.t1 MTR_8g099770 34.884 215 99 6 12 189 164 374 1.99e-28 116
MS.gene040136.t1 MTR_7g076030 33.641 217 100 7 39 217 243 453 4.51e-28 114
MS.gene040136.t1 MTR_2g005620 34.562 217 98 8 39 217 192 402 1.20e-27 112
MS.gene040136.t1 MTR_3g054080 31.628 215 108 5 10 189 86 296 1.25e-27 112
MS.gene040136.t1 MTR_7g110060 41.139 158 82 5 14 165 148 300 1.31e-27 111
MS.gene040136.t1 MTR_1g081870 35.185 216 99 6 12 190 196 407 2.25e-27 113
MS.gene040136.t1 MTR_8g092290 41.722 151 82 4 12 160 215 361 2.62e-27 113
MS.gene040136.t1 MTR_2g020210 32.210 267 130 7 12 230 176 439 2.82e-27 112
MS.gene040136.t1 MTR_7g114300 33.645 214 103 5 12 189 181 391 5.59e-27 111
MS.gene040136.t1 MTR_7g114300 33.484 221 107 6 12 195 181 398 9.84e-27 109
MS.gene040136.t1 MTR_7g114300 33.645 214 103 5 12 189 181 391 1.76e-26 110
MS.gene040136.t1 MTR_7g114300 33.971 209 99 5 12 184 181 386 3.50e-26 108
MS.gene040136.t1 MTR_2g090405 32.468 231 114 7 10 203 213 438 5.24e-26 109
MS.gene040136.t1 MTR_4g061330 36.420 162 75 3 97 233 2 160 5.58e-26 102
MS.gene040136.t1 MTR_2g085200 41.290 155 77 5 12 160 208 354 1.54e-25 108
MS.gene040136.t1 MTR_4g078290 32.719 217 105 6 10 189 201 413 2.92e-25 107
MS.gene040136.t1 MTR_4g078290 32.719 217 105 6 10 189 201 413 3.06e-25 107
MS.gene040136.t1 MTR_8g070930 30.901 233 133 8 14 236 217 431 3.56e-24 104
MS.gene040136.t1 MTR_3g060350 34.228 149 57 2 9 157 112 219 6.30e-24 99.8
MS.gene040136.t1 MTR_8g086010 35.000 160 51 3 1 160 200 306 3.51e-23 100
MS.gene040136.t1 MTR_8g043970 31.222 221 128 8 12 216 121 333 1.16e-19 90.5
MS.gene040136.t1 MTR_4g095670 26.601 203 99 5 39 196 215 412 1.33e-19 89.7
MS.gene040136.t1 MTR_4g095400 30.909 165 104 6 14 175 161 318 2.23e-18 85.9
MS.gene040136.t1 MTR_3g095620 33.000 200 101 7 12 192 97 282 2.30e-18 84.3
MS.gene040136.t1 MTR_1g111180 34.591 159 92 5 14 168 757 907 3.99e-18 86.3
MS.gene040136.t1 MTR_1g111180 34.591 159 92 5 14 168 756 906 4.02e-18 86.3
MS.gene040136.t1 MTR_1g048630 34.307 137 82 3 5 141 75 203 8.22e-18 85.5
MS.gene040136.t1 MTR_5g015830 26.601 203 99 5 39 196 210 407 2.06e-17 83.2
MS.gene040136.t1 MTR_4g094415 29.255 188 115 5 12 189 238 417 1.22e-16 81.3
MS.gene040136.t1 MTR_3g099920 31.183 186 116 4 11 189 91 271 1.55e-16 80.9
MS.gene040136.t1 MTR_6g090470 29.808 208 116 9 12 198 140 338 1.71e-16 80.1
MS.gene040136.t1 MTR_6g048250 31.551 187 114 5 11 189 91 271 1.86e-16 79.7
MS.gene040136.t1 MTR_5g059910 27.957 186 120 4 11 188 204 383 1.99e-16 80.1
MS.gene040136.t1 MTR_6g012990 30.851 188 116 5 11 190 91 272 2.79e-16 79.3
MS.gene040136.t1 MTR_6g048250 31.551 187 114 5 11 189 91 271 2.98e-16 79.7
MS.gene040136.t1 MTR_1g071480 32.911 158 91 4 41 190 109 259 3.14e-16 80.1
MS.gene040136.t1 MTR_6g048250 31.551 187 114 5 11 189 91 271 3.23e-16 80.1
MS.gene040136.t1 MTR_6g012990 30.851 188 116 5 11 190 91 272 3.32e-16 80.1
MS.gene040136.t1 MTR_5g082700 31.138 167 91 5 12 166 478 632 3.92e-16 80.1
MS.gene040136.t1 MTR_8g103240 32.716 162 62 5 97 220 285 437 4.36e-16 79.3
MS.gene040136.t1 MTR_5g082700 27.917 240 99 9 12 189 478 705 4.63e-16 79.7
MS.gene040136.t1 MTR_6g087920 35.338 133 46 3 95 189 270 400 4.98e-16 79.0
MS.gene040136.t1 MTR_3g092230 29.612 206 117 8 8 195 211 406 7.85e-16 79.0
MS.gene040136.t1 MTR_4g019410 29.091 220 122 9 12 207 91 300 1.01e-15 78.6
MS.gene040136.t1 MTR_4g019410 29.091 220 122 9 12 207 91 300 1.02e-15 79.0
MS.gene040136.t1 MTR_3g073250 32.500 160 90 5 41 190 373 524 1.10e-15 78.6
MS.gene040136.t1 MTR_0349s0030 26.778 239 107 6 10 189 55 284 1.40e-15 76.6
MS.gene040136.t1 MTR_1g090917 31.250 144 86 3 9 141 118 259 2.75e-15 77.0
MS.gene040136.t1 MTR_1g090917 31.250 144 86 3 9 141 118 259 3.24e-15 77.0
MS.gene040136.t1 MTR_8g024100 28.395 243 135 10 12 225 87 319 3.44e-15 77.0
MS.gene040136.t1 MTR_1g100250 26.455 189 121 6 12 189 486 667 3.76e-15 77.0
MS.gene040136.t1 MTR_5g059880 32.075 159 92 5 41 190 295 446 5.72e-15 76.3
MS.gene040136.t1 MTR_1g081000 29.213 178 111 4 22 190 88 259 5.86e-15 76.3
MS.gene040136.t1 MTR_1g081000 29.213 178 111 4 22 190 88 259 5.94e-15 76.3
MS.gene040136.t1 MTR_5g017830 29.126 206 116 8 11 197 210 404 6.17e-15 76.3
MS.gene040136.t1 MTR_3g101210 29.070 172 103 5 39 197 411 576 7.27e-15 76.3
MS.gene040136.t1 MTR_5g059940 31.447 159 93 5 41 190 228 379 7.56e-15 75.5
MS.gene040136.t1 MTR_3g101210 29.412 170 101 5 41 197 413 576 7.62e-15 75.9
MS.gene040136.t1 MTR_4g086660 28.502 207 118 7 10 197 212 407 9.09e-15 75.9
MS.gene040136.t1 MTR_1g090917 33.071 127 76 2 22 141 10 134 1.22e-14 74.7
MS.gene040136.t1 MTR_8g035890 24.479 192 128 5 12 194 89 272 1.34e-14 73.6
MS.gene040136.t1 MTR_1g090917 32.812 128 77 2 21 141 9 134 1.35e-14 74.3
MS.gene040136.t1 MTR_5g060350 31.875 160 91 5 41 190 424 575 1.99e-14 74.7
MS.gene040136.t1 MTR_0154s0020 24.186 215 140 7 7 209 74 277 2.14e-14 73.6
MS.gene040136.t1 MTR_4g051648 31.461 178 106 6 41 210 113 282 2.50e-14 74.7
MS.gene040136.t1 MTR_2g020380 29.891 184 112 5 12 182 71 250 2.51e-14 74.7
MS.gene040136.t1 MTR_7g073520 34.127 126 76 3 36 160 246 365 3.57e-14 73.6
MS.gene040136.t1 MTR_7g095450 29.050 179 110 5 22 190 88 259 4.43e-14 73.6
MS.gene040136.t1 MTR_6g074905 27.670 206 87 5 37 189 968 1164 5.25e-14 73.9
MS.gene040136.t1 MTR_0189s0010 24.537 216 138 8 7 209 94 297 5.36e-14 72.8
MS.gene040136.t1 MTR_3g073250 39.394 99 53 2 41 138 386 478 5.43e-14 73.2
MS.gene040136.t1 MTR_3g096230 28.221 163 100 5 41 193 349 504 5.62e-14 73.2
MS.gene040136.t1 MTR_8g093730 27.222 180 112 7 41 210 404 574 5.87e-14 73.6
MS.gene040136.t1 MTR_3g096230 28.221 163 100 5 41 193 349 504 6.23e-14 73.2
MS.gene040136.t1 MTR_4g125800 28.708 209 119 8 12 197 88 289 6.96e-14 71.6
MS.gene040136.t1 MTR_0154s0040 23.721 215 141 7 7 209 74 277 7.85e-14 72.0
MS.gene040136.t1 MTR_5g018050 29.048 210 123 7 33 225 76 276 9.52e-14 71.6
MS.gene040136.t1 MTR_5g018050 29.897 194 111 6 33 210 109 293 9.71e-14 72.0
MS.gene040136.t1 MTR_4g125800 28.708 209 119 8 12 197 141 342 1.05e-13 71.6
MS.gene040136.t1 MTR_5g017890 28.000 175 107 5 41 202 478 646 1.11e-13 72.4
MS.gene040136.t1 MTR_4g088745 40.816 98 52 2 41 138 152 243 1.12e-13 71.6
MS.gene040136.t1 MTR_4g088755 40.816 98 52 2 41 138 147 238 1.17e-13 71.6
MS.gene040136.t1 MTR_6g074870 32.609 138 77 5 38 168 195 323 1.30e-13 71.2
MS.gene040136.t1 MTR_4g125800 28.708 209 119 8 12 197 164 365 1.55e-13 71.2
MS.gene040136.t1 MTR_4g094415 38.144 97 53 2 44 139 270 360 1.73e-13 71.2
MS.gene040136.t1 MTR_6g470940 27.193 228 117 9 10 193 948 1170 2.49e-13 71.6
MS.gene040136.t1 MTR_2g045470 28.272 191 126 5 12 194 13 200 4.37e-13 70.1
MS.gene040136.t1 MTR_2g045470 28.272 191 126 5 12 194 93 280 5.69e-13 70.1
MS.gene040136.t1 MTR_1g080020 29.341 167 102 5 33 189 104 264 5.80e-13 68.6
MS.gene040136.t1 MTR_6g012980 28.125 192 116 6 11 190 145 326 5.96e-13 69.7
MS.gene040136.t1 MTR_4g088750 32.432 148 82 4 41 178 308 447 6.13e-13 70.1
MS.gene040136.t1 MTR_7g092360 29.747 158 96 4 41 190 121 271 7.75e-13 70.1
MS.gene040136.t1 MTR_4g005830 30.189 159 95 5 44 189 184 339 9.27e-13 68.9
MS.gene040136.t1 MTR_4g107280 26.554 177 113 6 33 198 152 322 9.77e-13 68.9
MS.gene040136.t1 MTR_4g067160 27.363 201 115 7 12 188 532 725 1.01e-12 69.7
MS.gene040136.t1 MTR_4g107280 26.554 177 113 6 33 198 191 361 1.13e-12 68.9
MS.gene040136.t1 MTR_4g082325 36.923 130 73 6 18 141 221 347 1.64e-12 68.6
MS.gene040136.t1 MTR_3g110405 25.397 189 124 5 10 189 108 288 1.75e-12 67.8
MS.gene040136.t1 MTR_8g042370 37.363 91 52 2 47 137 218 303 1.80e-12 68.2
MS.gene040136.t1 MTR_1g096490 33.553 152 81 6 53 191 146 290 2.04e-12 68.6
MS.gene040136.t1 MTR_8g098425 25.641 195 123 7 12 193 483 668 3.73e-12 68.2
MS.gene040136.t1 MTR_7g106710 28.571 196 113 7 12 190 209 394 3.80e-12 67.4
MS.gene040136.t1 MTR_7g106710 28.571 196 113 7 12 190 209 394 3.84e-12 67.4
MS.gene040136.t1 MTR_8g040300 23.656 186 125 5 12 188 83 260 4.23e-12 66.2
MS.gene040136.t1 MTR_1g052115 27.848 158 99 4 41 190 109 259 4.60e-12 67.8
MS.gene040136.t1 MTR_4g074875 27.673 159 103 3 40 191 123 276 4.64e-12 67.8
MS.gene040136.t1 MTR_7g106710 28.571 196 113 7 12 190 209 394 5.06e-12 67.4
MS.gene040136.t1 MTR_1g105290 30.061 163 97 5 39 189 161 318 5.16e-12 67.0
MS.gene040136.t1 MTR_1g052115 27.848 158 99 4 41 190 21 171 5.17e-12 67.4
MS.gene040136.t1 MTR_4g074875 27.673 159 103 3 40 191 123 276 5.19e-12 67.8
MS.gene040136.t1 MTR_7g106710 28.571 196 113 7 12 190 209 394 5.54e-12 67.4
MS.gene040136.t1 MTR_2g013900 39.175 97 53 3 41 137 269 359 5.56e-12 67.0
MS.gene040136.t1 MTR_1g105290 30.061 163 97 5 39 189 161 318 5.75e-12 67.4
MS.gene040136.t1 MTR_1g105290 30.061 163 97 5 39 189 161 318 6.09e-12 67.0
MS.gene040136.t1 MTR_4g075410 27.673 159 103 3 40 191 123 276 6.14e-12 67.4
MS.gene040136.t1 MTR_4g075410 27.673 159 103 3 40 191 123 276 6.56e-12 67.4
MS.gene040136.t1 MTR_7g113490 28.000 175 108 6 39 201 174 342 9.68e-12 66.6
MS.gene040136.t1 MTR_2g105010 27.976 168 113 3 29 190 104 269 1.26e-11 65.9
MS.gene040136.t1 MTR_5g067150 26.887 212 124 8 12 210 82 275 1.53e-11 65.5
MS.gene040136.t1 MTR_6g071280 25.000 196 125 6 11 189 128 318 1.94e-11 64.7
MS.gene040136.t1 MTR_8g024600 28.495 186 120 6 12 189 7 187 1.99e-11 64.7
MS.gene040136.t1 MTR_5g067150 26.887 212 124 8 12 210 82 275 2.19e-11 65.1
MS.gene040136.t1 MTR_8g024600 28.495 186 120 6 12 189 90 270 2.58e-11 64.7
MS.gene040136.t1 MTR_3g011730 36.264 91 53 2 47 137 419 504 5.03e-11 64.3
MS.gene040136.t1 MTR_4g086855 29.480 173 99 5 33 189 19 184 5.13e-11 62.8
MS.gene040136.t1 MTR_8g024590 32.812 128 79 5 12 137 90 212 8.18e-11 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene040136.t1 AT3G18040 53.350 403 118 8 1 341 1 395 8.24e-135 390
MS.gene040136.t1 AT3G18040 53.102 403 119 8 1 341 84 478 4.75e-134 392
MS.gene040136.t1 AT3G18040 53.102 403 119 8 1 341 89 483 8.05e-134 391
MS.gene040136.t1 AT3G18040 53.102 403 119 8 1 341 198 592 6.24e-133 392
MS.gene040136.t1 AT3G18040 52.927 410 122 9 1 347 198 599 1.08e-132 393
MS.gene040136.t1 AT1G73670 52.645 397 129 6 1 341 156 549 1.43e-131 388
MS.gene040136.t1 AT1G18150 52.020 396 136 7 1 345 170 562 8.28e-127 376
MS.gene040136.t1 AT1G18150 52.020 396 136 7 1 345 170 562 8.28e-127 376
MS.gene040136.t1 AT1G18150 52.020 396 136 7 1 345 170 562 8.28e-127 376
MS.gene040136.t1 AT2G01450 63.670 267 60 1 1 230 82 348 2.81e-125 369
MS.gene040136.t1 AT2G01450 63.670 267 60 1 1 230 82 348 2.81e-125 369
MS.gene040136.t1 AT2G01450 63.670 267 60 1 1 230 82 348 2.81e-125 369
MS.gene040136.t1 AT2G01450 63.670 267 60 1 1 230 82 348 2.81e-125 369
MS.gene040136.t1 AT5G19010 63.396 265 60 1 1 228 91 355 5.54e-123 365
MS.gene040136.t1 AT2G42880 63.670 267 60 2 1 230 91 357 2.20e-120 355
MS.gene040136.t1 AT3G14720 63.296 267 61 2 1 230 91 357 4.96e-120 353
MS.gene040136.t1 AT3G14720 63.296 267 61 2 1 230 91 357 4.96e-120 353
MS.gene040136.t1 AT2G42880 63.670 267 60 2 1 230 91 357 3.43e-119 357
MS.gene040136.t1 AT3G14720 63.296 267 61 2 1 230 91 357 2.53e-118 355
MS.gene040136.t1 AT1G53510 62.921 267 62 1 1 230 91 357 3.02e-117 352
MS.gene040136.t1 AT3G45640 43.446 267 107 4 3 232 106 365 1.23e-72 230
MS.gene040136.t1 AT4G01370 43.774 265 105 4 3 230 111 368 1.10e-71 228
MS.gene040136.t1 AT4G11330 43.774 265 105 4 3 230 111 368 5.47e-71 226
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MS.gene040136.t1 AT2G17520 27.273 187 121 5 16 189 520 704 4.48e-13 70.9
MS.gene040136.t1 AT3G53570 30.337 178 99 5 12 166 189 364 4.64e-13 70.5
MS.gene040136.t1 AT3G53570 30.337 178 99 5 12 166 189 364 4.64e-13 70.5
MS.gene040136.t1 AT3G53570 30.337 178 99 5 12 166 189 364 4.64e-13 70.5
MS.gene040136.t1 AT3G53570 30.337 178 99 5 12 166 175 350 5.02e-13 70.1
MS.gene040136.t1 AT3G53570 30.337 178 99 5 12 166 175 350 5.02e-13 70.1
MS.gene040136.t1 AT1G50700 29.730 222 124 10 4 204 132 342 5.13e-13 70.5
MS.gene040136.t1 AT1G30270 29.787 188 117 6 12 189 104 286 5.60e-13 70.1
MS.gene040136.t1 AT1G50700 33.333 162 84 8 56 204 192 342 5.73e-13 70.1
MS.gene040136.t1 AT1G30270 29.787 188 117 6 12 189 104 286 5.88e-13 70.1
MS.gene040136.t1 AT3G50530 24.629 337 184 13 11 287 224 550 6.54e-13 70.1
MS.gene040136.t1 AT2G30360 27.807 187 122 5 12 189 95 277 8.76e-13 69.3
MS.gene040136.t1 AT2G41140 30.244 205 110 9 10 192 198 391 1.00e-12 69.7
MS.gene040136.t1 AT5G18700 30.882 204 121 9 12 203 71 266 1.04e-12 70.1
MS.gene040136.t1 AT1G01140 29.787 188 119 6 12 189 92 276 1.06e-12 69.3
MS.gene040136.t1 AT1G63700 23.265 245 159 8 12 245 475 701 1.10e-12 69.7
MS.gene040136.t1 AT1G63700 23.265 245 159 8 12 245 475 701 1.10e-12 69.7
MS.gene040136.t1 AT1G01140 29.570 186 120 5 12 189 92 274 1.16e-12 68.9
MS.gene040136.t1 AT1G01140 29.570 186 120 5 12 189 92 274 1.27e-12 68.9
MS.gene040136.t1 AT5G21326 28.042 189 119 6 12 189 86 268 1.50e-12 68.6
MS.gene040136.t1 AT1G08650 29.193 161 97 6 41 190 120 274 1.65e-12 67.4
MS.gene040136.t1 AT1G08650 30.303 165 96 7 41 194 120 276 2.26e-12 67.0
MS.gene040136.t1 AT1G51660 30.189 159 95 5 44 189 179 334 2.30e-12 67.8
MS.gene040136.t1 AT4G08480 30.303 165 90 7 40 190 603 756 2.40e-12 68.6
MS.gene040136.t1 AT2G25880 24.339 189 126 5 10 189 109 289 2.58e-12 67.0
MS.gene040136.t1 AT2G25880 24.339 189 126 5 10 189 96 276 2.86e-12 67.0
MS.gene040136.t1 AT3G59410 30.000 200 111 9 12 188 537 730 3.29e-12 68.2
MS.gene040136.t1 AT3G59410 28.500 200 114 7 12 188 561 754 3.35e-12 68.2
MS.gene040136.t1 AT3G59410 28.500 200 114 7 12 188 538 731 3.37e-12 68.2
MS.gene040136.t1 AT2G26980 28.649 185 123 5 12 189 87 269 3.43e-12 67.4
MS.gene040136.t1 AT1G54960 27.160 162 102 5 39 189 174 330 3.49e-12 68.2
MS.gene040136.t1 AT1G54960 27.160 162 102 5 39 189 174 330 3.49e-12 68.2
MS.gene040136.t1 AT3G59410 28.500 200 114 7 12 188 537 730 3.55e-12 68.2
MS.gene040136.t1 AT3G59410 28.500 200 114 7 12 188 537 730 3.55e-12 68.2
MS.gene040136.t1 AT2G26980 28.649 185 123 5 12 189 87 269 3.62e-12 67.4
MS.gene040136.t1 AT2G25880 24.468 188 125 5 10 188 157 336 4.18e-12 67.0
MS.gene040136.t1 AT3G17850 27.014 211 114 8 11 183 954 1162 4.53e-12 67.8
MS.gene040136.t1 AT2G45490 29.710 138 88 3 12 148 95 224 6.56e-12 65.5
MS.gene040136.t1 AT4G26070 28.481 158 100 7 12 162 139 290 6.66e-12 65.9
MS.gene040136.t1 AT2G26980 29.032 186 121 6 12 189 87 269 6.67e-12 66.6
MS.gene040136.t1 AT1G61950 23.868 243 150 8 10 224 170 405 6.71e-12 67.0
MS.gene040136.t1 AT2G26980 28.649 185 123 5 12 189 97 279 6.88e-12 66.6
MS.gene040136.t1 AT2G31880 30.114 176 100 8 13 175 433 598 8.01e-12 67.0
MS.gene040136.t1 AT3G06030 28.571 161 99 4 40 189 175 330 8.07e-12 67.0
MS.gene040136.t1 AT5G58140 29.775 178 89 6 33 177 674 848 8.28e-12 67.0
MS.gene040136.t1 AT5G58140 29.775 178 89 6 33 177 674 848 8.28e-12 67.0
MS.gene040136.t1 AT5G58140 29.775 178 89 6 33 177 674 848 8.28e-12 67.0
MS.gene040136.t1 AT5G58140 29.775 178 89 6 33 177 674 848 8.28e-12 67.0
MS.gene040136.t1 AT5G58140 29.775 178 89 6 33 177 674 848 8.28e-12 67.0
MS.gene040136.t1 AT5G58140 29.775 178 89 6 33 177 674 848 9.17e-12 67.0
MS.gene040136.t1 AT5G66850 29.299 157 92 5 41 184 452 602 1.07e-11 66.6
MS.gene040136.t1 AT3G21220 29.814 161 93 5 44 189 170 325 1.09e-11 65.9
MS.gene040136.t1 AT3G21220 29.814 161 93 5 44 189 170 325 1.09e-11 65.9
MS.gene040136.t1 AT2G35890 26.316 209 115 7 45 224 240 438 1.23e-11 66.2
MS.gene040136.t1 AT2G35890 26.316 209 115 7 45 224 240 438 1.23e-11 66.2
MS.gene040136.t1 AT1G09000 27.778 162 99 6 39 188 175 330 1.25e-11 66.2
MS.gene040136.t1 AT5G66850 29.299 157 92 5 41 184 452 602 1.32e-11 66.2
MS.gene040136.t1 AT1G09000 27.778 162 99 6 39 188 175 330 1.41e-11 66.2
MS.gene040136.t1 AT5G14720 28.125 160 103 2 41 189 119 277 1.46e-11 66.2
MS.gene040136.t1 AT5G14720 28.125 160 103 2 41 189 119 277 1.46e-11 66.2
MS.gene040136.t1 AT5G13530 25.592 211 118 6 31 203 232 441 1.48e-11 66.2
MS.gene040136.t1 AT5G13530 25.592 211 118 6 31 203 232 441 1.48e-11 66.2
MS.gene040136.t1 AT5G66710 30.052 193 102 8 12 182 144 325 1.49e-11 65.5
MS.gene040136.t1 AT2G25090 27.778 198 121 9 10 190 87 279 1.62e-11 65.5
MS.gene040136.t1 AT4G32830 24.339 189 126 5 10 189 102 282 1.69e-11 64.7
MS.gene040136.t1 AT5G04870 31.788 151 83 5 53 190 266 409 1.71e-11 65.9
MS.gene040136.t1 AT1G18890 29.469 207 119 9 2 191 127 323 1.89e-11 65.5
MS.gene040136.t1 AT1G69790 31.515 165 82 6 47 185 190 349 2.17e-11 65.1
MS.gene040136.t1 AT3G50310 28.313 166 102 4 44 198 114 273 2.23e-11 64.7
MS.gene040136.t1 AT1G69790 30.769 169 86 6 43 185 197 360 2.43e-11 64.7
MS.gene040136.t1 AT3G13530 27.044 159 104 3 40 191 123 276 2.98e-11 65.5
MS.gene040136.t1 AT3G07980 29.814 161 97 6 40 191 123 276 3.56e-11 65.1
MS.gene040136.t1 AT5G25110 31.395 172 110 5 33 198 137 306 3.60e-11 64.7
MS.gene040136.t1 AT3G07980 29.814 161 97 6 40 191 123 276 3.68e-11 65.1
MS.gene040136.t1 AT3G10660 30.968 155 87 5 49 190 298 445 4.24e-11 64.7
MS.gene040136.t1 AT3G10660 30.968 155 87 5 49 190 298 445 4.24e-11 64.7
MS.gene040136.t1 AT4G32660 30.601 183 92 7 12 168 33 206 4.29e-11 63.5
MS.gene040136.t1 AT5G21222 27.568 185 125 4 12 189 86 268 4.41e-11 64.7
MS.gene040136.t1 AT5G21222 27.568 185 125 4 12 189 86 268 4.41e-11 64.7
MS.gene040136.t1 AT5G21222 27.568 185 125 4 12 189 86 268 4.41e-11 64.7
MS.gene040136.t1 AT5G21222 27.568 185 125 4 12 189 86 268 4.41e-11 64.7
MS.gene040136.t1 AT5G57630 39.450 109 54 5 36 141 22 121 5.37e-11 63.5
MS.gene040136.t1 AT4G32660 30.601 183 92 7 12 168 145 318 8.32e-11 63.2
MS.gene040136.t1 AT5G57630 39.450 109 54 5 36 141 110 209 9.31e-11 63.2
MS.gene040136.t1 AT4G32660 30.601 183 92 7 12 168 145 318 9.51e-11 63.2
MS.gene040136.t1 AT4G32660 30.601 183 92 7 12 168 137 310 9.81e-11 63.2
MS.gene040136.t1 AT5G57630 39.450 109 54 5 36 141 110 209 9.99e-11 63.2

Find 77 sgRNAs with CRISPR-Local

Find 178 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACTGGGAGGCCATTGTTTCC+TGG 0.244611 4.1:-539126 MS.gene040136:CDS
AAATTGAAGATATGCGATTT+TGG 0.258915 4.1:-539582 MS.gene040136:CDS
TTTCTTATACCAACTTCTTC+GGG 0.288262 4.1:-539761 MS.gene040136:CDS
TTTGATAAATCATGGAAATA+AGG 0.290902 4.1:+538573 None:intergenic
TTATGTTGTCTTTGAGTTGA+TGG 0.294595 4.1:-539845 MS.gene040136:CDS
TTAAACAGGCTCGCCTAGTT+TGG 0.298225 4.1:+537524 None:intergenic
GCACACCTTGAGGAACATTA+TGG 0.310472 4.1:-537661 MS.gene040136:CDS
GCATTTGCAAGAATGTTTCT+TGG 0.324220 4.1:+539612 None:intergenic
CTGGGAGGCCATTGTTTCCT+GGG 0.371766 4.1:-539125 MS.gene040136:CDS
GGCCTAAAATATATAAATTC+AGG 0.381924 4.1:-539739 MS.gene040136:intron
ATATTTGCAGAAATGCTTAC+TGG 0.383296 4.1:-539144 MS.gene040136:CDS
AAGCTGCGTGGAATGTAGTT+TGG 0.403525 4.1:+537176 None:intergenic
ATTCTATGCTGTTGCACAGC+GGG 0.414214 4.1:-537708 MS.gene040136:CDS
ACACTGCATCTACTATATAC+TGG 0.415480 4.1:-539536 MS.gene040136:CDS
GACAAATACGAAGAACCAAT+TGG 0.425231 4.1:-539103 MS.gene040136:CDS
CACTCCTCCTCCTGAGTCCA+TGG 0.430836 4.1:-539058 MS.gene040136:CDS
ATGCTCCACATATCAATTCC+AGG 0.435274 4.1:+539174 None:intergenic
TCCTTACCTAGGTAAATGTT+TGG 0.441417 4.1:-537598 MS.gene040136:CDS
GGTCAATGTTTGATAAATCA+TGG 0.442935 4.1:+538565 None:intergenic
ACAAGAAAATTCTACTGCTA+AGG 0.459333 4.1:+537548 None:intergenic
TCAAATCTTCAGTGCCCTCC+AGG 0.470802 4.1:-537251 MS.gene040136:intron
ACTTGTGATGATCAGGAGTA+AGG 0.489288 4.1:+539785 None:intergenic
GTTATAGAGACCAACCTCTT+CGG 0.502404 4.1:+538689 None:intergenic
GCCAAACATTTACCTAGGTA+AGG 0.504512 4.1:+537597 None:intergenic
AATCAGTCATGATATCCAAT+TGG 0.505068 4.1:+539088 None:intergenic
TGGGCTGAGTGGATGGTTCA+AGG 0.507548 4.1:+538544 None:intergenic
TGGTTCTTCGTATTTGTCCC+AGG 0.507605 4.1:+539108 None:intergenic
AAAACGTCCGTCAGCCGAAG+AGG 0.521653 4.1:-538703 MS.gene040136:intron
GATATCATGACTGATTTGCT+TGG 0.522143 4.1:-539081 MS.gene040136:CDS
CAAAGGACTATATTGCAACT+AGG 0.527211 4.1:-539364 MS.gene040136:intron
ACACTTTGAAGCACTAATGC+TGG 0.534229 4.1:+537142 None:intergenic
GGAATTGATATGTGGAGCAT+TGG 0.538134 4.1:-539171 MS.gene040136:CDS
CAAGAAAATTCTACTGCTAA+GGG 0.538763 4.1:+537549 None:intergenic
TGATTTACATCAAGTCATCA+AGG 0.541664 4.1:-539818 MS.gene040136:CDS
TGTCTTATGCAGTATACCCC+TGG 0.542426 4.1:-539192 MS.gene040136:intron
TTGAGTTTGAATTCGAGAGT+AGG 0.547459 4.1:-538512 MS.gene040136:CDS
TGCTCCACATATCAATTCCA+GGG 0.549043 4.1:+539175 None:intergenic
CTTTGCCATAATGTTCCTCA+AGG 0.560163 4.1:+537656 None:intergenic
GATGCAGTGTCGCTAAATGA+TGG 0.561668 4.1:+539549 None:intergenic
TGATAAACTTACATTGACCA+TGG 0.563500 4.1:+539041 None:intergenic
TTTGAAATGGGCTGAGTGGA+TGG 0.568819 4.1:+538537 None:intergenic
TATTTGCAGAAATGCTTACT+GGG 0.570081 4.1:-539143 MS.gene040136:CDS
TCTTTGAACTCACGAGGAGA+AGG 0.576629 4.1:+539871 None:intergenic
TTCTTATACCAACTTCTTCG+GGG 0.583668 4.1:-539760 MS.gene040136:CDS
AGACCAACCTCTTCGGCTGA+CGG 0.586003 4.1:+538696 None:intergenic
AAGAACTACTCACTTGACAC+TGG 0.591028 4.1:+537095 None:intergenic
TTGACCATGGACTCAGGAGG+AGG 0.592445 4.1:+539054 None:intergenic
CTTACATTGACCATGGACTC+AGG 0.594175 4.1:+539048 None:intergenic
CCGACAGTTTGCACACCTTG+AGG 0.602200 4.1:-537671 MS.gene040136:CDS
AATTGTCTAAAGATGATGTG+AGG 0.607970 4.1:-538488 MS.gene040136:CDS
TTCTATGCTGTTGCACAGCG+GGG 0.608015 4.1:-537707 MS.gene040136:CDS
ATACCCCTGGAATTGATATG+TGG 0.611069 4.1:-539179 MS.gene040136:CDS
ATTGTCTAAAGATGATGTGA+GGG 0.611737 4.1:-538487 MS.gene040136:CDS
TTGAACTCACGAGGAGAAGG+AGG 0.613923 4.1:+539874 None:intergenic
GAGGGAGTTGATTTATCGAG+AGG 0.615513 4.1:-538469 MS.gene040136:intron
ATATTGCCAAACATTTACCT+AGG 0.615796 4.1:+537592 None:intergenic
GTATTTGTCCCAGGAAACAA+TGG 0.619809 4.1:+539117 None:intergenic
CAAATCTTCAGTGCCCTCCA+GGG 0.620627 4.1:-537250 MS.gene040136:intron
CTTGAGGAACATTATGGCAA+AGG 0.624050 4.1:-537655 MS.gene040136:CDS
GCATCTGTCACATTATACCC+TGG 0.627074 4.1:+537233 None:intergenic
CCTCAAGGTGTGCAAACTGT+CGG 0.635394 4.1:+537671 None:intergenic
AACCACATAGTTCAGGTGCA+CGG 0.635811 4.1:+539336 None:intergenic
CTGTCACATTATACCCTGGA+GGG 0.644501 4.1:+537237 None:intergenic
GACAACATGCCTCCTTACCT+AGG 0.648555 4.1:-537609 MS.gene040136:CDS
ATTATGGCAAAGGCGGACGA+AGG 0.652346 4.1:-537645 MS.gene040136:CDS
GAGGAACATTATGGCAAAGG+CGG 0.654203 4.1:-537652 MS.gene040136:CDS
AAACATTTACCTAGGTAAGG+AGG 0.658415 4.1:+537600 None:intergenic
AATTCTATGCTGTTGCACAG+CGG 0.674130 4.1:-537709 MS.gene040136:CDS
GAGGCATGTTGTCTCTGCAA+TGG 0.678127 4.1:+537619 None:intergenic
GCACTCTTCAATAAGCTGCG+TGG 0.684103 4.1:+537164 None:intergenic
TACCGTGCACCTGAACTATG+TGG 0.684866 4.1:-539338 MS.gene040136:CDS
TCTGTCACATTATACCCTGG+AGG 0.685818 4.1:+537236 None:intergenic
TTGCAGAAATGCTTACTGGG+AGG 0.697678 4.1:-539140 MS.gene040136:CDS
TAAATATCTTTGAACTCACG+AGG 0.707414 4.1:+539865 None:intergenic
GCTCCACATATCAATTCCAG+GGG 0.712053 4.1:+539176 None:intergenic
AGGACTATATTGCAACTAGG+TGG 0.716669 4.1:-539361 MS.gene040136:CDS
ACATTGACCATGGACTCAGG+AGG 0.732102 4.1:+539051 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTAGGAATTAATTATAATA+TGG - chr4.1:539196-539215 MS.gene040136:intron 10.0%
!!! AGTTTAATATATTTTTTTTG+AGG - chr4.1:538857-538876 MS.gene040136:intron 10.0%
!!! TTTACTATCTAAAATAATAA+AGG + chr4.1:537297-537316 None:intergenic 10.0%
!! ATTAATTATAATATGGAAAG+TGG - chr4.1:539203-539222 MS.gene040136:intron 15.0%
!! TTAATTATAATATGGAAAGT+GGG - chr4.1:539204-539223 MS.gene040136:intron 15.0%
!!! TACCTGAATTTATATATTTT+AGG + chr4.1:537246-537265 None:intergenic 15.0%
!!! TTTTTACATCATATTTTCTT+GGG - chr4.1:537694-537713 MS.gene040136:CDS 15.0%
!!! TTTTTTACATCATATTTTCT+TGG - chr4.1:537693-537712 MS.gene040136:CDS 15.0%
!! ATATGTTATAATTACTCTCA+TGG - chr4.1:539548-539567 MS.gene040136:CDS 20.0%
!! ATCTATATTTGGAAATTTCT+TGG + chr4.1:538210-538229 None:intergenic 20.0%
!! ATTAATGAAATAGATCAACA+TGG + chr4.1:537499-537518 None:intergenic 20.0%
!! ATTATTCTAACTATAGCATT+AGG + chr4.1:538002-538021 None:intergenic 20.0%
!! ATTCTGTTGATCTTATATAT+TGG - chr4.1:538909-538928 MS.gene040136:intron 20.0%
!! CTTTAATATATGTATGTATC+AGG + chr4.1:538735-538754 None:intergenic 20.0%
!! GAAGTGATTATAATTAATGA+TGG + chr4.1:537270-537289 None:intergenic 20.0%
!! GTATCTTGAAAACATAATAT+TGG + chr4.1:538056-538075 None:intergenic 20.0%
!! TATGTTATAATTACTCTCAT+GGG - chr4.1:539549-539568 MS.gene040136:CDS 20.0%
!! TATTAACTATTACAACGTAA+AGG + chr4.1:538585-538604 None:intergenic 20.0%
!! TGTATATGATTAACTAGAAA+AGG - chr4.1:538315-538334 MS.gene040136:intron 20.0%
!! TTTCAATAATGAACAATGAA+AGG + chr4.1:538801-538820 None:intergenic 20.0%
!! TTTGATAAATCATGGAAATA+AGG + chr4.1:538410-538429 None:intergenic 20.0%
!!! TAATTTACCTACTTTTACAA+AGG - chr4.1:537599-537618 MS.gene040136:CDS 20.0%
!!! TACGTTTAAAATTCAGATTT+TGG - chr4.1:538606-538625 MS.gene040136:intron 20.0%
!!! TCAAACTCAAATTTTGAAAT+GGG + chr4.1:538458-538477 None:intergenic 20.0%
!!! TTCAAACTCAAATTTTGAAA+TGG + chr4.1:538459-538478 None:intergenic 20.0%
!!! TTTTCTAGTTAATCATATAC+AGG + chr4.1:538316-538335 None:intergenic 20.0%
! AGTCTCTATAAAAGCAAAAT+AGG + chr4.1:539016-539035 None:intergenic 25.0%
! ATATAGTCCTTTGTAAAAGT+AGG + chr4.1:537609-537628 None:intergenic 25.0%
! ATTTCCAAATATAGATCCTT+TGG - chr4.1:538214-538233 MS.gene040136:intron 25.0%
! CAAATACACAGAATTAACAA+TGG - chr4.1:538940-538959 MS.gene040136:intron 25.0%
! GGCCTAAAATATATAAATTC+AGG - chr4.1:537241-537260 MS.gene040136:CDS 25.0%
! GTCTCTATAAAAGCAAAATA+GGG + chr4.1:539015-539034 None:intergenic 25.0%
! TAGTAAAATCAAGCTTCATT+TGG + chr4.1:538102-538121 None:intergenic 25.0%
! TTCCATCTGAAAATCTTAAA+AGG + chr4.1:537535-537554 None:intergenic 25.0%
!! AAATTGAAGATATGCGATTT+TGG - chr4.1:537398-537417 MS.gene040136:intron 25.0%
!! ATTTTCACTACTTTCATTCT+TGG + chr4.1:539685-539704 None:intergenic 25.0%
!! TTTGGAATCTGTAAAATCAA+GGG + chr4.1:538131-538150 None:intergenic 25.0%
!! TTTTCTTATACCAACTTCTT+CGG - chr4.1:537218-537237 MS.gene040136:CDS 25.0%
!!! CTATTGATTTCATAAAACTG+CGG + chr4.1:537974-537993 None:intergenic 25.0%
!!! GTTCTTTTTTCACAAAAGTA+AGG - chr4.1:537664-537683 MS.gene040136:CDS 25.0%
!!! TACATGTATTGATTATTAGC+TGG - chr4.1:539247-539266 MS.gene040136:intron 25.0%
!!! TGTTTTCAAGATACAACTTA+CGG - chr4.1:538062-538081 MS.gene040136:intron 25.0%
AAAAAAGAACCACATAGTTC+AGG + chr4.1:537654-537673 None:intergenic 30.0%
AAAGATATTCATCAAGCATC+TGG + chr4.1:538642-538661 None:intergenic 30.0%
AAATAGGGACTAAACTTGAA+AGG + chr4.1:539000-539019 None:intergenic 30.0%
AAATTTCTTGGAGAATGGAA+CGG + chr4.1:538198-538217 None:intergenic 30.0%
AAGAAAAACTTGTGATGATC+AGG + chr4.1:537205-537224 None:intergenic 30.0%
AAGATATTCATCAAGCATCT+GGG + chr4.1:538641-538660 None:intergenic 30.0%
AATCAGTCATGATATCCAAT+TGG + chr4.1:537895-537914 None:intergenic 30.0%
AATTGTCTAAAGATGATGTG+AGG - chr4.1:538492-538511 MS.gene040136:CDS 30.0%
ACAAGAAAATTCTACTGCTA+AGG + chr4.1:539435-539454 None:intergenic 30.0%
ACCATCAGTAATTTGATATG+AGG + chr4.1:539152-539171 None:intergenic 30.0%
ATAAGATCAACAGAATGTCA+AGG + chr4.1:538905-538924 None:intergenic 30.0%
ATATTGCCAAACATTTACCT+AGG + chr4.1:539391-539410 None:intergenic 30.0%
ATATTTGCAGAAATGCTTAC+TGG - chr4.1:537836-537855 MS.gene040136:intron 30.0%
ATGCTTGATGAATATCTTTG+TGG - chr4.1:538643-538662 MS.gene040136:intron 30.0%
ATTGTCTAAAGATGATGTGA+GGG - chr4.1:538493-538512 MS.gene040136:CDS 30.0%
CAAGAAAATTCTACTGCTAA+GGG + chr4.1:539434-539453 None:intergenic 30.0%
GCAAAGTTATACCTATTACA+AGG + chr4.1:539130-539149 None:intergenic 30.0%
GGTCAATGTTTGATAAATCA+TGG + chr4.1:538418-538437 None:intergenic 30.0%
TAAATATCTTTGAACTCACG+AGG + chr4.1:537118-537137 None:intergenic 30.0%
TATTTGCAGAAATGCTTACT+GGG - chr4.1:537837-537856 MS.gene040136:intron 30.0%
TGATAAACTTACATTGACCA+TGG + chr4.1:537942-537961 None:intergenic 30.0%
TGATTTACATCAAGTCATCA+AGG - chr4.1:537162-537181 MS.gene040136:CDS 30.0%
TTCATGCTTAACCTTGTAAT+AGG - chr4.1:539116-539135 MS.gene040136:CDS 30.0%
TTTCTTATACCAACTTCTTC+GGG - chr4.1:537219-537238 MS.gene040136:CDS 30.0%
TTTGGAAATTTCTTGGAGAA+TGG + chr4.1:538203-538222 None:intergenic 30.0%
! AAGATATGATTTGAAGTAGG+AGG + chr4.1:538560-538579 None:intergenic 30.0%
! GAATTTTCTTGTTCCAAACT+AGG - chr4.1:539443-539462 MS.gene040136:intron 30.0%
! GAGAAGATATGATTTGAAGT+AGG + chr4.1:538563-538582 None:intergenic 30.0%
! GTTTGGAATCTGTAAAATCA+AGG + chr4.1:538132-538151 None:intergenic 30.0%
! TTTGTTATGCTTGTGATATC+AGG - chr4.1:538373-538392 MS.gene040136:intron 30.0%
!! AAATTTCTAGCTTTCTCGTT+TGG + chr4.1:538149-538168 None:intergenic 30.0%
!! CGCAGTTTTATGAAATCAAT+AGG - chr4.1:537972-537991 MS.gene040136:intron 30.0%
!! TTATGTTGTCTTTGAGTTGA+TGG - chr4.1:537135-537154 MS.gene040136:CDS 30.0%
!!! TGCCTTTTAAGATTTTCAGA+TGG - chr4.1:537530-537549 MS.gene040136:CDS 30.0%
AAACATTTACCTAGGTAAGG+AGG + chr4.1:539383-539402 None:intergenic 35.0%
AATCGGTCTGTATTGTCATA+GGG - chr4.1:538770-538789 MS.gene040136:intron 35.0%
AATCTGTAAAATCAAGGGAG+GGG + chr4.1:538126-538145 None:intergenic 35.0%
AATTTCTTGGAGAATGGAAC+GGG + chr4.1:538197-538216 None:intergenic 35.0%
ACACTGCATCTACTATATAC+TGG - chr4.1:537444-537463 MS.gene040136:intron 35.0%
AGAGCCAAAGGATCTATATT+TGG + chr4.1:538221-538240 None:intergenic 35.0%
AGATATTCATCAAGCATCTG+GGG + chr4.1:538640-538659 None:intergenic 35.0%
CAAAGGACTATATTGCAACT+AGG - chr4.1:537616-537635 MS.gene040136:CDS 35.0%
CAGCAATCCAGTATTTAAAC+AGG + chr4.1:539473-539492 None:intergenic 35.0%
CTTGATGAATATCTTTGTGG+TGG - chr4.1:538646-538665 MS.gene040136:intron 35.0%
GAATCTGTAAAATCAAGGGA+GGG + chr4.1:538127-538146 None:intergenic 35.0%
GACAAATACGAAGAACCAAT+TGG - chr4.1:537877-537896 MS.gene040136:intron 35.0%
GCATTTGCAAGAATGTTTCT+TGG + chr4.1:537371-537390 None:intergenic 35.0%
GCCTCATATCAAATTACTGA+TGG - chr4.1:539148-539167 MS.gene040136:CDS 35.0%
GGTAAATGTGCTAGTATACT+TGG - chr4.1:538695-538714 MS.gene040136:intron 35.0%
GTATACTAGCACATTTACCT+TGG + chr4.1:538694-538713 None:intergenic 35.0%
TCCTTACCTAGGTAAATGTT+TGG - chr4.1:539382-539401 MS.gene040136:intron 35.0%
TTCTTATACCAACTTCTTCG+GGG - chr4.1:537220-537239 MS.gene040136:CDS 35.0%
TTGAGTTTGAATTCGAGAGT+AGG - chr4.1:538468-538487 MS.gene040136:intron 35.0%
! AGTTGATTTATCGAGAGGTA+TGG - chr4.1:538516-538535 MS.gene040136:CDS 35.0%
! TATACTTGGCGATCTTTTGA+AGG - chr4.1:538709-538728 MS.gene040136:CDS 35.0%
! TGAAAGGTCGTGATTTTACA+GGG + chr4.1:538984-539003 None:intergenic 35.0%
! TTGAAAGGTCGTGATTTTAC+AGG + chr4.1:538985-539004 None:intergenic 35.0%
!! CTGTGTTTTGCATGTCATTT+AGG - chr4.1:539179-539198 MS.gene040136:CDS 35.0%
!! GATATCATGACTGATTTGCT+TGG - chr4.1:537899-537918 MS.gene040136:intron 35.0%
!!! AAATTTTGAAATGGGCTGAG+TGG + chr4.1:538450-538469 None:intergenic 35.0%
!!! GACTTCTCGTCTTCTTTTTT+AGG - chr4.1:539512-539531 MS.gene040136:intron 35.0%
AAAAAGTCAGGCGCTCAAAA+TGG - chr4.1:539771-539790 MS.gene040136:CDS 40.0%
AAACCAGGTTCATGTATCCA+AGG - chr4.1:538674-538693 MS.gene040136:intron 40.0%
AACGATATTGAAATGCCGAC+TGG - chr4.1:539705-539724 MS.gene040136:intron 40.0%
AATTCTATGCTGTTGCACAG+CGG - chr4.1:539271-539290 MS.gene040136:intron 40.0%
ACTTGTGATGATCAGGAGTA+AGG + chr4.1:537198-537217 None:intergenic 40.0%
AGGACTATATTGCAACTAGG+TGG - chr4.1:537619-537638 MS.gene040136:CDS 40.0%
ATACCCCTGGAATTGATATG+TGG - chr4.1:537801-537820 MS.gene040136:intron 40.0%
ATCTGTAAAATCAAGGGAGG+GGG + chr4.1:538125-538144 None:intergenic 40.0%
ATGCTCCACATATCAATTCC+AGG + chr4.1:537809-537828 None:intergenic 40.0%
CAATCGGTCTGTATTGTCAT+AGG - chr4.1:538769-538788 MS.gene040136:intron 40.0%
CACTGAAGATTTGATCCAGT+CGG + chr4.1:539723-539742 None:intergenic 40.0%
CTTGAGGAACATTATGGCAA+AGG - chr4.1:539325-539344 MS.gene040136:CDS 40.0%
CTTTGCCATAATGTTCCTCA+AGG + chr4.1:539327-539346 None:intergenic 40.0%
GCCAAACATTTACCTAGGTA+AGG + chr4.1:539386-539405 None:intergenic 40.0%
GGAATCTGTAAAATCAAGGG+AGG + chr4.1:538128-538147 None:intergenic 40.0%
GGAATTGATATGTGGAGCAT+TGG - chr4.1:537809-537828 MS.gene040136:intron 40.0%
GTATTTGTCCCAGGAAACAA+TGG + chr4.1:537866-537885 None:intergenic 40.0%
GTGACAGATGCTAAAAAGTC+AGG - chr4.1:539759-539778 MS.gene040136:CDS 40.0%
GTTATAGAGACCAACCTCTT+CGG + chr4.1:538294-538313 None:intergenic 40.0%
TGCTCCACATATCAATTCCA+GGG + chr4.1:537808-537827 None:intergenic 40.0%
TTACCTTGGATACATGAACC+TGG + chr4.1:538680-538699 None:intergenic 40.0%
! AAGTCAGCATACGTTGATAG+AGG + chr4.1:537580-537599 None:intergenic 40.0%
! GAAGATATGCGATTTTGGAC+TGG - chr4.1:537403-537422 MS.gene040136:intron 40.0%
!! ACACTTTGAAGCACTAATGC+TGG + chr4.1:539841-539860 None:intergenic 40.0%
AACCACATAGTTCAGGTGCA+CGG + chr4.1:537647-537666 None:intergenic 45.0%
AAGCTGCGTGGAATGTAGTT+TGG + chr4.1:539807-539826 None:intergenic 45.0%
AGCAGACGTGCATCAACAAT+CGG - chr4.1:538753-538772 MS.gene040136:intron 45.0%
AGGCGAGCCTGTTTAAATAC+TGG - chr4.1:539463-539482 MS.gene040136:intron 45.0%
ATTCTATGCTGTTGCACAGC+GGG - chr4.1:539272-539291 MS.gene040136:intron 45.0%
CATGGGTTCACATATGAGGT+TGG - chr4.1:539566-539585 MS.gene040136:CDS 45.0%
CTCTCATGGGTTCACATATG+AGG - chr4.1:539562-539581 MS.gene040136:CDS 45.0%
CTGTCACATTATACCCTGGA+GGG + chr4.1:539746-539765 None:intergenic 45.0%
CTTACATTGACCATGGACTC+AGG + chr4.1:537935-537954 None:intergenic 45.0%
GAGGAACATTATGGCAAAGG+CGG - chr4.1:539328-539347 MS.gene040136:CDS 45.0%
GCACACCTTGAGGAACATTA+TGG - chr4.1:539319-539338 MS.gene040136:intron 45.0%
GCATCTGTCACATTATACCC+TGG + chr4.1:539750-539769 None:intergenic 45.0%
GCTCCACATATCAATTCCAG+GGG + chr4.1:537807-537826 None:intergenic 45.0%
GGGGTATACTGCATAAGACA+AGG + chr4.1:537788-537807 None:intergenic 45.0%
TCCAGTATACGAAGAGCCAA+AGG + chr4.1:538233-538252 None:intergenic 45.0%
TCTGTCACATTATACCCTGG+AGG + chr4.1:539747-539766 None:intergenic 45.0%
TCTTTGAACTCACGAGGAGA+AGG + chr4.1:537112-537131 None:intergenic 45.0%
TGGTTCTTCGTATTTGTCCC+AGG + chr4.1:537875-537894 None:intergenic 45.0%
TGTCTTATGCAGTATACCCC+TGG - chr4.1:537788-537807 MS.gene040136:intron 45.0%
TTAAACAGGCTCGCCTAGTT+TGG + chr4.1:539459-539478 None:intergenic 45.0%
TTGCAGAAATGCTTACTGGG+AGG - chr4.1:537840-537859 MS.gene040136:intron 45.0%
! ATTTTAGGCCCCGAAGAAGT+TGG + chr4.1:537231-537250 None:intergenic 45.0%
! GAGGGAGTTGATTTATCGAG+AGG - chr4.1:538511-538530 MS.gene040136:CDS 45.0%
! GATGCAGTGTCGCTAAATGA+TGG + chr4.1:537434-537453 None:intergenic 45.0%
! TTTGTGGTGGAGATCAAACC+AGG - chr4.1:538659-538678 MS.gene040136:intron 45.0%
!! TCCTTTGGCTCTTCGTATAC+TGG - chr4.1:538229-538248 MS.gene040136:intron 45.0%
!! TTTGAAATGGGCTGAGTGGA+TGG + chr4.1:538446-538465 None:intergenic 45.0%
!!! TATTTTATAAAATTTATGTA+GGG - chr4.1:539050-539069 MS.gene040136:intron 5.0%
!!! TTATTTTATAAAATTTATGT+AGG - chr4.1:539049-539068 MS.gene040136:intron 5.0%
ACATTGACCATGGACTCAGG+AGG + chr4.1:537932-537951 None:intergenic 50.0%
ATTATGGCAAAGGCGGACGA+AGG - chr4.1:539335-539354 MS.gene040136:CDS 50.0%
CAAATCTTCAGTGCCCTCCA+GGG - chr4.1:539730-539749 MS.gene040136:intron 50.0%
CCTCAAGGTGTGCAAACTGT+CGG + chr4.1:539312-539331 None:intergenic 50.0%
GACAACATGCCTCCTTACCT+AGG - chr4.1:539371-539390 MS.gene040136:intron 50.0%
GAGGCATGTTGTCTCTGCAA+TGG + chr4.1:539364-539383 None:intergenic 50.0%
GCACTCTTCAATAAGCTGCG+TGG + chr4.1:539819-539838 None:intergenic 50.0%
GGAGGAATGAGCGAAATGCA+TGG + chr4.1:538542-538561 None:intergenic 50.0%
TACCGTGCACCTGAACTATG+TGG - chr4.1:537642-537661 MS.gene040136:CDS 50.0%
TCAAATCTTCAGTGCCCTCC+AGG - chr4.1:539729-539748 MS.gene040136:intron 50.0%
TTCTATGCTGTTGCACAGCG+GGG - chr4.1:539273-539292 MS.gene040136:intron 50.0%
TTGAACTCACGAGGAGAAGG+AGG + chr4.1:537109-537128 None:intergenic 50.0%
!!! TCGGCTGACGGACGTTTTTT+AGG + chr4.1:538275-538294 None:intergenic 50.0%
AAAACGTCCGTCAGCCGAAG+AGG - chr4.1:538277-538296 MS.gene040136:intron 55.0%
ACTGGGAGGCCATTGTTTCC+TGG - chr4.1:537854-537873 MS.gene040136:intron 55.0%
AGACCAACCTCTTCGGCTGA+CGG + chr4.1:538287-538306 None:intergenic 55.0%
CCGACAGTTTGCACACCTTG+AGG - chr4.1:539309-539328 MS.gene040136:intron 55.0%
CTGGGAGGCCATTGTTTCCT+GGG - chr4.1:537855-537874 MS.gene040136:intron 55.0%
TGGGCTGAGTGGATGGTTCA+AGG + chr4.1:538439-538458 None:intergenic 55.0%
TTGACCATGGACTCAGGAGG+AGG + chr4.1:537929-537948 None:intergenic 55.0%
CACTCCTCCTCCTGAGTCCA+TGG - chr4.1:537922-537941 MS.gene040136:intron 60.0%
CGTCCGTCAGCCGAAGAGGT+TGG - chr4.1:538281-538300 MS.gene040136:intron 65.0%


Chromosome Type Strat End Strand Name
chr4.1 gene 537100 539902 537100 ID=MS.gene040136
chr4.1 mRNA 537100 539902 537100 ID=MS.gene040136.t1;Parent=MS.gene040136
chr4.1 exon 539740 539902 539740 ID=MS.gene040136.t1.exon1;Parent=MS.gene040136.t1
chr4.1 CDS 539740 539902 539740 ID=cds.MS.gene040136.t1;Parent=MS.gene040136.t1
chr4.1 exon 539533 539660 539533 ID=MS.gene040136.t1.exon2;Parent=MS.gene040136.t1
chr4.1 CDS 539533 539660 539533 ID=cds.MS.gene040136.t1;Parent=MS.gene040136.t1
chr4.1 exon 539322 539381 539322 ID=MS.gene040136.t1.exon3;Parent=MS.gene040136.t1
chr4.1 CDS 539322 539381 539322 ID=cds.MS.gene040136.t1;Parent=MS.gene040136.t1
chr4.1 exon 539053 539202 539053 ID=MS.gene040136.t1.exon4;Parent=MS.gene040136.t1
chr4.1 CDS 539053 539202 539053 ID=cds.MS.gene040136.t1;Parent=MS.gene040136.t1
chr4.1 exon 538704 538748 538704 ID=MS.gene040136.t1.exon5;Parent=MS.gene040136.t1
chr4.1 CDS 538704 538748 538704 ID=cds.MS.gene040136.t1;Parent=MS.gene040136.t1
chr4.1 exon 538470 538607 538470 ID=MS.gene040136.t1.exon6;Parent=MS.gene040136.t1
chr4.1 CDS 538470 538607 538470 ID=cds.MS.gene040136.t1;Parent=MS.gene040136.t1
chr4.1 exon 537530 537736 537530 ID=MS.gene040136.t1.exon7;Parent=MS.gene040136.t1
chr4.1 CDS 537530 537736 537530 ID=cds.MS.gene040136.t1;Parent=MS.gene040136.t1
chr4.1 exon 537100 537261 537100 ID=MS.gene040136.t1.exon8;Parent=MS.gene040136.t1
chr4.1 CDS 537100 537261 537100 ID=cds.MS.gene040136.t1;Parent=MS.gene040136.t1
Gene Sequence

>MS.gene040136

ATGCTTCCTCCTTCTCCTCGTGAGTTCAAAGATATTTATGTTGTCTTTGAGTTGATGGATTCTGATTTACATCAAGTCATCAAGGCAAATAGTGACCTTACTCCTGATCATCACAAGTTTTTCTTATACCAACTTCTTCGGGGCCTAAAATATATAAATTCAGGTATCCATCATTAATTATAATCACTTCACTTCCTTTATTATTTTAGATAGTAAACTCATGTATCTATTTCATTTTGCAGCTAACGTGTTTCATCGCGATTTGAAACCAAGAAACATTCTTGCAAATGCTGATTGCAAATTGAAGATATGCGATTTTGGACTGGCTCGACCATCATTTAGCGACACTGCATCTACTATATACTGGACTGTAAGTACTCTAATAGTAATACACAACCATGTTGATCTATTTCATTAATCAATTATGTTTTGCCTTTTAAGATTTTCAGATGGAATGTACAAATTATAATCTAATTACCTCTATCAACGTATGCTGACTTAATTTACCTACTTTTACAAAGGACTATATTGCAACTAGGTGGTACCGTGCACCTGAACTATGTGGTTCTTTTTTCACAAAAGTAAGGTTTTTTTTTTTTACATCATATTTTCTTGGGTTATGTATGTGTGTGATACAAGAAAGTGACTACACTTGTTGTATTGAAATATGCATGTAATTTATAATCCTTGTCTTATGCAGTATACCCCTGGAATTGATATGTGGAGCATTGGATGCATATTTGCAGAAATGCTTACTGGGAGGCCATTGTTTCCTGGGACAAATACGAAGAACCAATTGGATATCATGACTGATTTGCTTGGCACTCCTCCTCCTGAGTCCATGGTCAATGTAAGTTTATCAAAATCTATTCCGCAGTTTTATGAAATCAATAGGCATGCCTAATGCTATAGTTAGAATAATGCTAAATTTCTACTACTTCTAAAAAAATATTCCAATATTATGTTTTCAAGATACAACTTACGGTTTATTGTAATAAACCAAATGAAGCTTGATTTTACTACCCCCTCCCTTGATTTTACAGATTCCAAACGAGAAAGCTAGAAATTTTCTTAGTAAAATGCGAAAAAAGTAACCCGTTCCATTCTCCAAGAAATTTCCAAATATAGATCCTTTGGCTCTTCGTATACTGGAGCGCTTGCTTGCATTTGATCCTAAAAAACGTCCGTCAGCCGAAGAGGTTGGTCTCTATAACCTGTATATGATTAACTAGAAAAGGAGAATTTTCATTGATAAATAACAAAGATGATTTTTTTTGTTATGCTTGTGATATCAGGCATTGTCTGATCCTTATTTCCATGATTTATCAAACATTGACCTTGAACCATCCACTCAGCCCATTTCAAAATTTGAGTTTGAATTCGAGAGTAGGAAATTGTCTAAAGATGATGTGAGGGAGTTGATTTATCGAGAGGTATGGCCATGCATTTCGCTCATTCCTCCTACTTCAAATCATATCTTCTCCTTTACGTTGTAATAGTTAATATTACGTTTAAAATTCAGATTTTGGAGTATCATCCCCAGATGCTTGATGAATATCTTTGTGGTGGAGATCAAACCAGGTTCATGTATCCAAGGTAAATGTGCTAGTATACTTGGCGATCTTTTGAAGGCCTGATACATACATATATTAAAGCAGACGTGCATCAACAATCGGTCTGTATTGTCATAGGGCATTACCTTTCATTGTTCATTATTGAAATGCGATCTAAGATATTAAATCAACTTTTACTGTATGAGTTTAATATATTTTTTTTGAGGCAGTATGAGTTTAATATTGTTGCCTTGACATTCTGTTGATCTTATATATTGGTTGATTTGCAAATACACAGAATTAACAATGGCTTAAATGATTTTTTAGTCCCTGTAAAATCACGACCTTTCAAGTTTAGTCCCTATTTTGCTTTTATAGAGACTTACAAGCACTATTTTATTTTATAAAATTTATGTAGGGACTAAATTTGTAAGCTTGTGATTTTATCACGACAATTCTTTTGTTCATGCTTAACCTTGTAATAGGTATAACTTTGCCTCATATCAAATTACTGATGGTTAATTTTCTGTGTTTTGCATGTCATTTAGGAATTAATTATAATATGGAAAGTGGGTTCTTTTGAAATTCAAAATTTACATGTATTGATTATTAGCTGGTAATTCTATGCTGTTGCACAGCGGGGTTGATCGATTCAACCGACAGTTTGCACACCTTGAGGAACATTATGGCAAAGGCGGACGAAGGTCACCATTGCAGAGACAACATGCCTCCTTACCTAGGTAAATGTTTGGCAATATTTGATTCTGAGCAGTTTCTACCCTTAGCAGTAGAATTTTCTTGTTCCAAACTAGGCGAGCCTGTTTAAATACTGGATTGCTGTCTTACATTTTGAAGAACAGACTTCTCGTCTTCTTTTTTAGGATTTATGTGTTTAATATGTTATAATTACTCTCATGGGTTCACATATGAGGTTGGCAACATGTCTGTGAAACATTTTCTCTGCTATTGTGAGAGTCATATGCATTGAGTATTGTAATTTCACTTTATGCAGAGAGCGAGTTCATATTTCCAAGAATGAAAGTAGTGAAAATAACGATATTGAAATGCCGACTGGATCAAATCTTCAGTGCCCTCCAGGGTATAATGTGACAGATGCTAAAAAGTCAGGCGCTCAAAATGGACTCTCGAAGCCAAACTACATTCCACGCAGCTTATTGAAGAGTGCCAGCATTAGTGCTTCAAAGTGTATAGAAGTGAAAAGAAGTAAAGATCCAGTGTCAAGTGAGTAG
Protein sequence

>MS.gene040136.t1

MLPPSPREFKDIYVVFELMDSDLHQVIKANSDLTPDHHKFFLYQLLRGLKYINSANVFHRDLKPRNILANADCKLKICDFGLARPSFSDTASTIYWTDYIATRWYRAPELCGSFFTKYTPGIDMWSIGCIFAEMLTGRPLFPGTNTKNQLDIMTDLLGTPPPESMVNRLLAFDPKKRPSAEEALSDPYFHDLSNIDLEPSTQPISKFEFEFESRKLSKDDVRELIYRELVILCCCTAGLIDSTDSLHTLRNIMAKADEGHHCRDNMPPYLGKCLAIFDSEQFLPLAVEFSCSKLGEPCPPGYNVTDAKKSGAQNGLSKPNYIPRSLLKSASISASKCIEVKRSKDPVSSE