AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene040137

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene040137.t1 MTR_8g106960 99.062 320 3 0 11 330 287 606 0.0 663
MS.gene040137.t1 MTR_8g106960 99.327 297 2 0 11 307 287 583 0.0 618
MS.gene040137.t1 MTR_6g079470 78.882 322 60 5 11 330 258 573 6.60e-176 499
MS.gene040137.t1 MTR_4g117490 73.109 238 63 1 11 248 194 430 6.36e-131 383
MS.gene040137.t1 MTR_4g117490 73.109 238 63 1 11 248 194 430 2.73e-130 383
MS.gene040137.t1 MTR_2g021330 74.890 227 55 2 11 236 194 419 3.63e-129 375
MS.gene040137.t1 MTR_2g021330 67.816 261 78 3 11 266 194 453 7.38e-129 379
MS.gene040137.t1 MTR_3g089510 59.477 306 94 5 11 289 182 484 5.53e-116 348
MS.gene040137.t1 MTR_3g089510 59.477 306 94 5 11 289 194 496 6.78e-116 348
MS.gene040137.t1 MTR_2g072840 70.614 228 66 1 11 238 194 420 6.75e-113 337
MS.gene040137.t1 MTR_2g072840 70.614 228 66 1 11 238 104 330 2.31e-112 336
MS.gene040137.t1 MTR_2g072840 70.614 228 66 1 11 238 194 420 1.94e-111 336
MS.gene040137.t1 MTR_5g091680 60.215 279 102 4 11 288 191 461 1.61e-110 330
MS.gene040137.t1 MTR_5g091680 63.359 262 87 4 11 271 191 444 2.96e-110 328
MS.gene040137.t1 MTR_5g091680 60.215 279 102 4 11 288 189 459 5.01e-110 329
MS.gene040137.t1 MTR_5g091680 60.215 279 102 4 11 288 191 461 5.67e-110 329
MS.gene040137.t1 MTR_8g461040 61.993 271 87 4 11 273 195 457 1.97e-109 330
MS.gene040137.t1 MTR_8g106970 73.460 211 23 4 24 232 148 327 2.17e-100 299
MS.gene040137.t1 MTR_8g098845 43.787 169 90 3 11 178 217 381 1.00e-44 157
MS.gene040137.t1 MTR_4g061320 43.353 173 94 3 11 182 205 374 6.66e-44 155
MS.gene040137.t1 MTR_7g078690 44.048 168 91 2 11 178 203 367 1.61e-43 154
MS.gene040137.t1 MTR_5g010030 44.048 168 91 2 11 178 206 370 1.65e-42 151
MS.gene040137.t1 MTR_4g087620 41.420 169 95 3 11 179 220 384 2.81e-42 150
MS.gene040137.t1 MTR_8g028720 43.787 169 90 3 11 178 202 366 4.71e-42 150
MS.gene040137.t1 MTR_3g112210 39.645 169 98 3 11 179 198 362 6.49e-36 133
MS.gene040137.t1 MTR_3g460950 39.412 170 93 5 11 177 198 360 6.48e-34 128
MS.gene040137.t1 MTR_3g060330 39.412 170 93 5 11 177 198 360 6.48e-34 128
MS.gene040137.t1 MTR_4g061130 36.686 169 89 3 11 179 204 354 3.58e-31 120
MS.gene040137.t1 MTR_8g086000 36.842 171 102 4 11 180 198 363 9.14e-30 117
MS.gene040137.t1 MTR_8g086000 36.842 171 102 4 11 180 241 406 1.16e-29 117
MS.gene040137.t1 MTR_4g061330 37.572 173 92 5 11 182 9 166 1.93e-29 111
MS.gene040137.t1 MTR_3g060390 35.802 162 97 4 18 179 174 328 9.08e-27 108
MS.gene040137.t1 MTR_3g460980 35.802 162 97 4 18 179 178 332 1.26e-26 107
MS.gene040137.t1 MTR_8g086010 30.994 171 94 4 11 179 268 416 9.32e-22 95.5
MS.gene040137.t1 MTR_3g040810 34.868 152 92 4 10 159 201 347 7.75e-21 93.6
MS.gene040137.t1 MTR_4g103810 39.259 135 73 4 6 133 379 511 2.35e-20 92.0
MS.gene040137.t1 MTR_4g103810 39.259 135 73 4 6 133 269 401 3.79e-20 90.9
MS.gene040137.t1 MTR_4g007750 39.062 128 72 3 10 136 184 306 6.97e-20 89.0
MS.gene040137.t1 MTR_8g461270 39.535 129 69 3 11 136 216 338 7.58e-20 89.4
MS.gene040137.t1 MTR_3g040520 34.211 152 93 4 10 159 203 349 9.05e-20 90.1
MS.gene040137.t1 MTR_8g103240 33.974 156 94 3 11 165 292 439 1.70e-19 89.4
MS.gene040137.t1 MTR_3g085650 36.296 135 77 3 6 133 575 707 1.85e-19 89.7
MS.gene040137.t1 MTR_3g085650 36.296 135 77 3 6 133 575 707 1.88e-19 89.7
MS.gene040137.t1 MTR_3g085650 36.296 135 77 3 6 133 575 707 1.94e-19 89.7
MS.gene040137.t1 MTR_4g109090 37.008 127 71 4 10 133 121 241 4.73e-19 88.2
MS.gene040137.t1 MTR_4g109090 37.008 127 71 4 10 133 269 389 5.08e-19 88.2
MS.gene040137.t1 MTR_2g016490 40.876 137 70 5 11 145 205 332 6.58e-19 87.0
MS.gene040137.t1 MTR_2g083940 40.000 150 81 6 11 157 199 342 1.11e-18 86.3
MS.gene040137.t1 MTR_8g080190 36.567 134 78 2 6 133 544 676 1.15e-18 87.4
MS.gene040137.t1 MTR_2g083940 40.000 150 81 6 11 157 253 396 1.19e-18 86.7
MS.gene040137.t1 MTR_4g094430 37.121 132 76 4 10 139 167 293 1.94e-18 84.3
MS.gene040137.t1 MTR_8g099770 38.235 136 72 5 4 133 245 374 2.84e-18 85.9
MS.gene040137.t1 MTR_6g087920 36.508 126 73 4 11 133 279 400 3.18e-18 85.1
MS.gene040137.t1 MTR_8g012450 31.013 158 94 3 11 163 163 310 3.42e-18 85.1
MS.gene040137.t1 MTR_8g012450 31.613 155 91 3 11 160 163 307 5.51e-18 84.7
MS.gene040137.t1 MTR_5g008860 38.583 127 69 5 10 133 304 424 6.03e-18 85.1
MS.gene040137.t1 MTR_1g086370 39.416 137 72 5 11 145 207 334 8.09e-18 83.6
MS.gene040137.t1 MTR_1g086370 39.416 137 72 5 11 145 240 367 9.02e-18 84.0
MS.gene040137.t1 MTR_4g118780 36.842 133 78 3 4 133 259 388 1.10e-17 84.3
MS.gene040137.t1 MTR_1g086370 37.500 144 65 4 11 145 121 248 1.39e-17 82.0
MS.gene040137.t1 MTR_2g020210 36.090 133 79 3 4 133 257 386 1.43e-17 84.0
MS.gene040137.t1 MTR_3g098760 38.583 127 69 4 10 133 261 381 1.55e-17 83.6
MS.gene040137.t1 MTR_7g110060 38.686 137 73 5 11 145 240 367 1.76e-17 83.2
MS.gene040137.t1 MTR_1g075610 34.351 131 74 4 10 136 189 311 2.15e-17 81.6
MS.gene040137.t1 MTR_2g032060 34.351 131 81 3 10 139 167 293 4.31e-17 80.5
MS.gene040137.t1 MTR_4g078290 35.484 124 77 2 10 133 293 413 5.34e-17 82.4
MS.gene040137.t1 MTR_4g078290 35.484 124 77 2 10 133 293 413 5.39e-17 82.4
MS.gene040137.t1 MTR_6g013030 31.844 179 98 6 4 167 265 434 7.46e-17 81.6
MS.gene040137.t1 MTR_2g090405 35.862 145 75 6 10 147 305 438 8.77e-17 81.6
MS.gene040137.t1 MTR_1g098300 36.196 163 88 4 10 162 290 446 1.28e-16 80.9
MS.gene040137.t1 MTR_7g114300 37.097 124 75 2 10 133 271 391 1.31e-16 80.9
MS.gene040137.t1 MTR_7g114300 35.714 126 74 3 10 133 271 391 1.35e-16 80.9
MS.gene040137.t1 MTR_1g084760 36.923 130 75 4 11 138 240 364 1.84e-16 80.1
MS.gene040137.t1 MTR_2g005620 37.500 136 76 5 11 145 255 382 2.09e-16 80.1
MS.gene040137.t1 MTR_7g011800 35.714 140 73 6 4 134 275 406 2.43e-16 80.1
MS.gene040137.t1 MTR_8g432510 36.719 128 74 4 11 136 304 426 4.10e-16 79.3
MS.gene040137.t1 MTR_7g114300 36.364 121 70 3 10 128 271 386 8.27e-16 78.2
MS.gene040137.t1 MTR_7g114300 36.364 121 70 3 10 128 271 386 9.12e-16 77.8
MS.gene040137.t1 MTR_6g080470 37.313 134 71 5 4 133 170 294 9.67e-16 77.8
MS.gene040137.t1 MTR_1g081870 36.800 125 76 2 10 134 286 407 1.25e-15 78.2
MS.gene040137.t1 MTR_3g085650 35.537 121 69 3 6 119 575 693 2.12e-15 77.4
MS.gene040137.t1 MTR_7g076030 35.938 128 75 4 11 136 306 428 3.62e-15 76.3
MS.gene040137.t1 MTR_7g076030 35.385 130 77 4 11 138 199 323 6.69e-15 75.1
MS.gene040137.t1 MTR_8g071230 35.484 124 76 3 11 133 163 283 1.03e-14 75.1
MS.gene040137.t1 MTR_3g054080 34.127 126 79 3 11 136 178 299 1.26e-14 74.7
MS.gene040137.t1 MTR_3g096960 35.211 142 67 6 10 133 194 328 1.39e-14 74.7
MS.gene040137.t1 MTR_8g092290 45.588 68 34 2 10 76 305 370 2.06e-14 74.3
MS.gene040137.t1 MTR_7g110060 38.793 116 64 4 11 124 240 350 2.62e-14 73.6
MS.gene040137.t1 MTR_5g026960 33.588 131 81 4 11 139 163 289 2.73e-14 73.6
MS.gene040137.t1 MTR_2g085200 32.283 127 77 4 10 133 298 418 7.75e-14 72.8
MS.gene040137.t1 MTR_3g060350 37.079 89 56 0 19 107 174 262 1.34e-13 70.5
MS.gene040137.t1 MTR_4g087620 52.830 53 24 1 11 63 220 271 8.09e-13 68.2
MS.gene040137.t1 MTR_8g080190 51.613 62 29 1 6 67 544 604 2.23e-12 68.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene040137.t1 AT3G18040 73.538 325 75 5 11 330 104 422 2.48e-161 457
MS.gene040137.t1 AT3G18040 73.538 325 75 5 11 330 187 505 4.30e-161 459
MS.gene040137.t1 AT3G18040 73.538 325 75 5 11 330 192 510 5.30e-161 459
MS.gene040137.t1 AT3G18040 73.538 325 75 5 11 330 301 619 1.30e-159 460
MS.gene040137.t1 AT3G18040 68.182 352 76 6 11 330 301 648 9.57e-156 451
MS.gene040137.t1 AT1G73670 69.159 321 92 4 11 329 259 574 8.29e-155 446
MS.gene040137.t1 AT1G18150 68.615 325 86 5 11 329 273 587 5.83e-144 419
MS.gene040137.t1 AT1G18150 68.615 325 86 5 11 329 273 587 5.83e-144 419
MS.gene040137.t1 AT1G18150 68.615 325 86 5 11 329 273 587 5.83e-144 419
MS.gene040137.t1 AT2G01450 60.000 300 113 3 11 303 185 484 4.81e-127 372
MS.gene040137.t1 AT2G01450 60.000 300 113 3 11 303 185 484 4.81e-127 372
MS.gene040137.t1 AT2G01450 60.000 300 113 3 11 303 185 484 4.81e-127 372
MS.gene040137.t1 AT2G01450 60.000 300 113 3 11 303 185 484 4.81e-127 372
MS.gene040137.t1 AT5G19010 70.870 230 67 0 11 240 194 423 5.44e-122 362
MS.gene040137.t1 AT2G42880 73.778 225 58 1 11 235 194 417 6.21e-120 353
MS.gene040137.t1 AT2G42880 73.778 225 58 1 11 235 194 417 1.48e-118 355
MS.gene040137.t1 AT3G14720 69.957 233 68 2 11 243 194 424 5.00e-109 330
MS.gene040137.t1 AT3G14720 71.622 222 61 2 11 232 194 413 4.23e-108 322
MS.gene040137.t1 AT3G14720 71.622 222 61 2 11 232 194 413 4.23e-108 322
MS.gene040137.t1 AT1G53510 67.544 228 73 1 11 238 194 420 1.97e-105 321
MS.gene040137.t1 AT4G01370 43.195 169 93 2 11 179 208 373 2.52e-44 156
MS.gene040137.t1 AT1G07880 44.311 167 88 3 11 176 198 360 2.19e-42 150
MS.gene040137.t1 AT2G46070 41.667 168 95 2 11 178 206 370 3.68e-41 147
MS.gene040137.t1 AT4G11330 41.667 168 95 2 11 178 208 372 4.22e-41 147
MS.gene040137.t1 AT2G46070 41.667 168 95 2 11 178 240 404 4.53e-41 148
MS.gene040137.t1 AT1G01560 40.476 168 97 2 11 178 205 369 5.82e-40 144
MS.gene040137.t1 AT3G59790 42.353 170 92 4 11 179 225 389 5.04e-39 142
MS.gene040137.t1 AT3G45640 38.824 170 97 3 11 178 203 367 2.64e-38 140
MS.gene040137.t1 AT2G43790 42.775 173 87 6 11 179 228 392 6.14e-37 137
MS.gene040137.t1 AT4G01595 65.714 105 33 1 25 129 20 121 1.02e-35 126
MS.gene040137.t1 AT4G36450 38.824 170 99 3 11 179 195 360 4.57e-35 131
MS.gene040137.t1 AT2G18170 37.278 169 102 2 11 179 198 362 6.73e-33 125
MS.gene040137.t1 AT1G10210 35.882 170 103 3 11 179 198 362 2.84e-31 121
MS.gene040137.t1 AT1G10210 35.882 170 103 3 11 179 198 362 2.84e-31 121
MS.gene040137.t1 AT1G10210 35.882 170 103 3 11 179 198 362 2.84e-31 121
MS.gene040137.t1 AT2G46070 46.218 119 63 1 11 129 206 323 4.58e-31 119
MS.gene040137.t1 AT1G59580 35.465 172 103 3 11 179 198 364 5.50e-31 120
MS.gene040137.t1 AT1G59580 35.465 172 103 3 11 179 198 364 5.50e-31 120
MS.gene040137.t1 AT1G01560 42.609 115 65 1 11 125 205 318 2.42e-27 110
MS.gene040137.t1 AT2G38620 40.625 128 70 3 10 136 122 244 1.31e-21 92.4
MS.gene040137.t1 AT3G48750 38.168 131 76 3 10 139 167 293 3.07e-21 92.4
MS.gene040137.t1 AT2G38620 40.625 128 70 3 10 136 184 306 3.79e-21 92.4
MS.gene040137.t1 AT1G20930 36.641 131 71 4 10 136 187 309 3.97e-21 92.4
MS.gene040137.t1 AT5G64960 34.868 152 92 4 10 159 204 350 1.23e-20 92.8
MS.gene040137.t1 AT5G64960 34.868 152 92 4 10 159 151 297 1.30e-20 92.4
MS.gene040137.t1 AT5G10270 33.526 173 106 5 10 178 204 371 1.70e-20 92.4
MS.gene040137.t1 AT3G54180 39.062 128 72 3 10 136 182 304 2.47e-20 90.1
MS.gene040137.t1 AT1G76540 35.115 131 73 4 10 136 185 307 2.94e-19 87.0
MS.gene040137.t1 AT4G10010 34.921 126 75 3 10 133 140 260 9.61e-19 87.0
MS.gene040137.t1 AT1G06390 37.870 169 94 6 11 176 235 395 1.02e-18 86.7
MS.gene040137.t1 AT1G06390 37.870 169 94 6 11 176 235 395 1.02e-18 86.7
MS.gene040137.t1 AT2G30980 36.464 181 100 7 11 188 237 405 1.47e-18 86.3
MS.gene040137.t1 AT4G10010 34.921 126 75 3 10 133 320 440 1.49e-18 87.0
MS.gene040137.t1 AT3G01085 36.508 126 76 3 10 134 279 401 2.25e-18 86.3
MS.gene040137.t1 AT3G01085 36.508 126 76 3 10 134 279 401 2.31e-18 86.3
MS.gene040137.t1 AT3G01085 36.508 126 76 3 10 134 279 401 2.31e-18 86.3
MS.gene040137.t1 AT4G18710 40.876 137 70 5 11 145 205 332 2.66e-18 85.1
MS.gene040137.t1 AT1G67580 37.778 135 75 3 6 133 565 697 3.56e-18 85.9
MS.gene040137.t1 AT1G67580 37.778 135 75 3 6 133 565 697 3.56e-18 85.9
MS.gene040137.t1 AT4G13020 34.194 155 83 5 8 156 169 310 4.93e-18 84.3
MS.gene040137.t1 AT4G13020 34.194 155 83 5 8 156 160 301 5.33e-18 84.3
MS.gene040137.t1 AT4G13020 34.194 155 83 5 8 156 160 301 6.11e-18 84.3
MS.gene040137.t1 AT4G13020 34.194 155 83 5 8 156 160 301 6.14e-18 84.3
MS.gene040137.t1 AT4G13020 34.194 155 83 5 8 156 169 310 6.52e-18 84.7
MS.gene040137.t1 AT4G13020 34.194 155 83 5 8 156 160 301 6.97e-18 84.3
MS.gene040137.t1 AT4G13020 34.194 155 83 5 8 156 168 309 8.06e-18 84.3
MS.gene040137.t1 AT4G13020 34.194 155 83 5 8 156 168 309 8.09e-18 84.3
MS.gene040137.t1 AT3G61160 37.984 129 75 4 11 138 267 391 1.05e-17 84.0
MS.gene040137.t1 AT3G61160 37.984 129 75 4 11 138 274 398 1.13e-17 84.0
MS.gene040137.t1 AT5G14640 39.416 137 72 5 11 145 239 366 1.15e-17 83.6
MS.gene040137.t1 AT5G14640 39.416 137 72 5 11 145 239 366 1.15e-17 83.6
MS.gene040137.t1 AT3G61160 38.583 127 73 4 11 136 267 389 1.20e-17 83.6
MS.gene040137.t1 AT4G19110 34.351 131 76 3 8 134 160 284 1.61e-17 83.6
MS.gene040137.t1 AT4G19110 34.351 131 76 3 8 134 160 284 1.74e-17 83.2
MS.gene040137.t1 AT4G19110 34.351 131 76 3 8 134 104 228 2.02e-17 82.8
MS.gene040137.t1 AT1G03740 38.281 128 68 4 10 133 377 497 3.76e-17 82.8
MS.gene040137.t1 AT1G03740 38.281 128 68 4 10 133 377 497 3.87e-17 82.8
MS.gene040137.t1 AT4G00720 39.062 128 71 4 11 136 303 425 4.15e-17 82.4
MS.gene040137.t1 AT1G57870 35.948 153 91 6 11 161 247 394 5.30e-17 81.6
MS.gene040137.t1 AT1G57870 35.948 153 91 6 11 161 247 394 5.30e-17 81.6
MS.gene040137.t1 AT1G57870 35.948 153 91 6 11 161 247 394 5.30e-17 81.6
MS.gene040137.t1 AT1G57870 37.162 148 86 6 11 156 247 389 7.77e-17 81.3
MS.gene040137.t1 AT1G09840 36.601 153 90 6 11 161 121 268 1.02e-16 79.7
MS.gene040137.t1 AT1G09840 38.971 136 74 5 11 145 248 375 1.23e-16 80.5
MS.gene040137.t1 AT1G09840 38.971 136 74 5 11 145 248 375 1.23e-16 80.5
MS.gene040137.t1 AT1G09840 38.971 136 74 5 11 145 248 375 1.23e-16 80.5
MS.gene040137.t1 AT1G09840 38.971 136 74 5 11 145 248 375 1.23e-16 80.5
MS.gene040137.t1 AT1G09840 38.971 136 74 5 11 145 248 375 1.23e-16 80.5
MS.gene040137.t1 AT1G09840 38.971 136 74 5 11 145 248 375 1.23e-16 80.5
MS.gene040137.t1 AT1G09840 38.971 136 74 5 11 145 248 375 1.23e-16 80.5
MS.gene040137.t1 AT1G09840 38.971 136 74 5 11 145 248 375 1.23e-16 80.5
MS.gene040137.t1 AT1G09840 38.971 136 74 5 11 145 248 375 1.23e-16 80.5
MS.gene040137.t1 AT1G09840 38.971 136 74 5 11 145 248 375 1.23e-16 80.5
MS.gene040137.t1 AT3G05840 37.692 130 74 4 11 138 238 362 1.26e-16 80.5
MS.gene040137.t1 AT3G05840 37.692 130 74 4 11 138 238 362 1.26e-16 80.5
MS.gene040137.t1 AT1G54610 35.714 126 74 3 10 133 282 402 1.29e-16 80.9
MS.gene040137.t1 AT1G54610 35.714 126 74 3 10 133 282 402 1.29e-16 80.9
MS.gene040137.t1 AT1G54610 35.714 126 74 3 10 133 282 402 1.29e-16 80.9
MS.gene040137.t1 AT5G63370 37.405 131 73 4 11 134 466 594 1.46e-16 80.9
MS.gene040137.t1 AT5G63370 37.405 131 73 4 11 134 466 594 1.46e-16 80.9
MS.gene040137.t1 AT5G63370 37.405 131 73 4 11 134 466 594 1.46e-16 80.9
MS.gene040137.t1 AT5G63370 37.405 131 73 4 11 134 466 594 1.46e-16 80.9
MS.gene040137.t1 AT5G63370 37.405 131 73 4 11 134 466 594 1.46e-16 80.9
MS.gene040137.t1 AT5G63370 37.405 131 73 4 11 134 332 460 1.58e-16 80.5
MS.gene040137.t1 AT5G63370 37.405 131 73 4 11 134 332 460 1.58e-16 80.5
MS.gene040137.t1 AT5G26751 37.692 130 74 4 11 138 234 358 1.60e-16 80.1
MS.gene040137.t1 AT5G50860 35.484 124 77 2 10 133 278 398 1.73e-16 80.5
MS.gene040137.t1 AT5G45430 34.752 141 86 4 8 147 160 295 2.22e-16 80.1
MS.gene040137.t1 AT5G45430 34.752 141 86 4 8 147 160 295 2.23e-16 80.1
MS.gene040137.t1 AT5G50860 35.484 124 77 2 10 133 278 398 2.43e-16 80.1
MS.gene040137.t1 AT1G66750 35.878 131 77 5 4 133 169 293 5.33e-16 78.2
MS.gene040137.t1 AT5G39420 32.800 125 79 3 10 133 269 389 6.32e-16 79.0
MS.gene040137.t1 AT1G71530 28.839 267 159 11 10 258 311 564 1.15e-15 78.2
MS.gene040137.t1 AT4G28980 30.986 142 89 3 11 151 297 430 1.73e-15 77.4
MS.gene040137.t1 AT4G28980 30.986 142 89 3 11 151 297 430 1.73e-15 77.4
MS.gene040137.t1 AT4G28980 30.986 142 89 3 11 151 297 430 1.73e-15 77.4
MS.gene040137.t1 AT1G71530 36.290 124 76 3 10 133 311 431 2.24e-15 77.0
MS.gene040137.t1 AT1G18670 32.000 125 82 2 10 133 296 418 2.75e-15 77.0
MS.gene040137.t1 AT1G74330 32.800 125 79 3 10 133 287 407 3.13e-15 77.0
MS.gene040137.t1 AT1G18670 32.000 125 82 2 10 133 296 418 3.17e-15 77.0
MS.gene040137.t1 AT1G18670 32.000 125 82 2 10 133 296 418 3.18e-15 77.0
MS.gene040137.t1 AT1G74330 32.258 124 81 2 10 133 287 407 3.24e-15 77.0
MS.gene040137.t1 AT1G74330 32.258 124 81 2 10 133 287 407 3.35e-15 77.0
MS.gene040137.t1 AT5G63610 34.965 143 66 6 10 133 199 333 3.62e-15 76.6
MS.gene040137.t1 AT1G09600 34.266 143 80 6 10 147 327 460 4.57e-15 76.6
MS.gene040137.t1 AT1G53050 34.677 124 78 2 10 133 298 418 6.32e-15 76.3
MS.gene040137.t1 AT1G53050 34.677 124 78 2 10 133 298 418 6.32e-15 76.3
MS.gene040137.t1 AT4G22940 32.593 135 82 4 1 133 261 388 9.38e-15 75.5
MS.gene040137.t1 AT3G61160 38.261 115 66 4 11 124 267 377 9.55e-15 74.7
MS.gene040137.t1 AT4G22940 32.593 135 82 4 1 133 261 388 9.96e-15 75.1
MS.gene040137.t1 AT1G71530 37.500 120 70 4 10 128 311 426 1.55e-14 74.3
MS.gene040137.t1 AT5G44290 33.871 124 79 2 10 133 301 421 1.67e-14 74.7
MS.gene040137.t1 AT5G44290 33.871 124 79 2 10 133 301 421 1.67e-14 74.7
MS.gene040137.t1 AT5G44290 33.871 124 79 2 10 133 301 421 1.67e-14 74.7
MS.gene040137.t1 AT5G44290 33.871 124 79 2 10 133 301 421 1.67e-14 74.7
MS.gene040137.t1 AT5G44290 33.871 124 79 2 10 133 301 421 1.67e-14 74.7
MS.gene040137.t1 AT5G44290 33.871 124 79 2 10 133 301 421 1.79e-14 74.7
MS.gene040137.t1 AT5G44290 33.871 124 79 2 10 133 301 421 1.91e-14 74.3
MS.gene040137.t1 AT3G05050 47.761 67 34 1 10 76 302 367 4.95e-14 73.2
MS.gene040137.t1 AT3G05050 47.761 67 34 1 10 76 302 367 4.95e-14 73.2
MS.gene040137.t1 AT3G05050 47.761 67 34 1 10 76 302 367 4.95e-14 73.2
MS.gene040137.t1 AT1G18040 33.083 133 78 4 4 133 168 292 7.61e-14 72.0
MS.gene040137.t1 AT4G18710 55.556 63 25 2 11 72 199 259 8.01e-14 70.9
MS.gene040137.t1 AT1G73690 34.783 138 69 6 4 133 167 291 1.86e-13 70.9
MS.gene040137.t1 AT3G61160 50.000 62 30 1 11 72 267 327 6.50e-13 69.3
MS.gene040137.t1 AT3G61160 50.000 62 30 1 11 72 274 334 7.06e-13 68.9
MS.gene040137.t1 AT1G01560 54.717 53 23 1 11 63 205 256 7.40e-13 68.2
MS.gene040137.t1 AT1G01560 54.717 53 23 1 11 63 205 256 7.40e-13 68.2
MS.gene040137.t1 AT1G07880 53.448 58 26 1 11 68 198 254 1.01e-12 67.4
MS.gene040137.t1 AT1G33770 35.433 127 73 4 10 133 305 425 3.71e-12 67.4
MS.gene040137.t1 AT5G63370 49.123 57 28 1 11 67 466 521 9.88e-12 66.2
MS.gene040137.t1 AT5G63370 49.123 57 28 1 11 67 466 521 9.88e-12 66.2
MS.gene040137.t1 AT1G57700 47.059 68 33 2 10 76 310 375 1.02e-11 66.2
MS.gene040137.t1 AT5G63370 49.123 57 28 1 11 67 332 387 1.51e-11 65.5

Find 66 sgRNAs with CRISPR-Local

Find 214 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GATCTATATTTGGAAATTTC+TGG 0.131002 4.1:+531250 None:intergenic
ATACACCTGGAATTGATATT+TGG 0.234898 4.1:-531696 MS.gene040137:CDS
GCACATCTTGAGGAACATTA+TGG 0.287628 4.1:-530066 MS.gene040137:CDS
AGAGCCAAAGGATCTATATT+TGG 0.291132 4.1:+531240 None:intergenic
TCCTTTGGCTCTTCGTATAC+TGG 0.299510 4.1:-531229 MS.gene040137:CDS
TTCGACAAACCATGGAAATA+AGG 0.305447 4.1:+531044 None:intergenic
GAAAACTCAGGCGCTCAAAA+TGG 0.310697 4.1:-529609 MS.gene040137:CDS
TCGTCATTGACCTCTATAAT+AGG 0.328855 4.1:+528558 None:intergenic
ACTGGGAGACCATTGTTTCC+TGG 0.350902 4.1:-531643 MS.gene040137:CDS
GAATATATTCCTCAAGCATC+TGG 0.367968 4.1:+530814 None:intergenic
ATTTCCAAATATAGATCCTT+TGG 0.372500 4.1:-531244 MS.gene040137:CDS
AAGCTACGTGGACTGTAGTT+TGG 0.375438 4.1:+529576 None:intergenic
ATATTTGCAGAAATGCTTAC+TGG 0.383296 4.1:-531661 MS.gene040137:CDS
ATCTATATTTGGAAATTTCT+GGG 0.383945 4.1:+531251 None:intergenic
TTTGGAAATTTCTGGGAGAA+TGG 0.393312 4.1:+531258 None:intergenic
TTGTCTGATCCTTATTTCCA+TGG 0.421204 4.1:-531053 MS.gene040137:CDS
CTGGGAGACCATTGTTTCCT+GGG 0.427092 4.1:-531642 MS.gene040137:CDS
GGAATTGATATTTGGAGCAT+TGG 0.429072 4.1:-531688 MS.gene040137:CDS
AACGATATTGAAATGCCAAC+TGG 0.429611 4.1:-529675 MS.gene040137:CDS
ATGCTCCAAATATCAATTCC+AGG 0.459885 4.1:+531691 None:intergenic
AATTTCTGGGAGAATGGAAC+GGG 0.487228 4.1:+531264 None:intergenic
AAACCAGCTTCATGTATCCT+AGG 0.488425 4.1:-530779 MS.gene040137:intron
CTCCTCCTGAGTCCATTGCA+AGG 0.497924 4.1:-531570 MS.gene040137:CDS
TTCGAAATGAGAAAGCTAGA+AGG 0.509848 4.1:-531314 MS.gene040137:CDS
TCAAATCTTCAGAGCCCTCC+AGG 0.512832 4.1:-529651 MS.gene040137:CDS
GACAAATACTTACCGAGGTA+AGG 0.513297 4.1:+529999 None:intergenic
AATATATTCCTCAAGCATCT+GGG 0.518685 4.1:+530815 None:intergenic
AGACCAACCTCTTCGGCTGA+TGG 0.520836 4.1:+531174 None:intergenic
GATATCATGACTGATTTGCT+TGG 0.522143 4.1:-531598 MS.gene040137:CDS
CTCTGAAGATTTGATCCAGT+TGG 0.523754 4.1:+529660 None:intergenic
ACACTTTGAAGCACTAATGC+TGG 0.534229 4.1:+529542 None:intergenic
TAATAAACTAACCCTTGCAA+TGG 0.535088 4.1:+531558 None:intergenic
GCGACAGTTTGCACATCTTG+AGG 0.542226 4.1:-530076 MS.gene040137:CDS
TTTGAAATGGGGTGAGTGGA+TGG 0.543531 4.1:+531008 None:intergenic
TTAGCAGGAGCCTATTATAG+AGG 0.550587 4.1:-528568 MS.gene040137:intron
TTGAGTTTGAATTCGAGAGA+AGG 0.551371 4.1:-530983 MS.gene040137:CDS
TCCTCCTGAGTCCATTGCAA+GGG 0.558865 4.1:-531569 MS.gene040137:intron
CTAACCCTTGCAATGGACTC+AGG 0.560637 4.1:+531565 None:intergenic
CTTGCAATGGACTCAGGAGG+AGG 0.563372 4.1:+531571 None:intergenic
TTTCTTATGCAGTATACACC+TGG 0.563595 4.1:-531709 MS.gene040137:intron
ACTTACAGTCCAGAAAATAG+TGG 0.566185 4.1:+532005 None:intergenic
TTACCTAGGATACATGAAGC+TGG 0.566431 4.1:+530776 None:intergenic
TATTTGCAGAAATGCTTACT+GGG 0.570081 4.1:-531660 MS.gene040137:CDS
AAACTAGAACTAAGCATGCA+TGG 0.575267 4.1:+528503 None:intergenic
GTTATGGAGACCAACCTCTT+CGG 0.580000 4.1:+531167 None:intergenic
AAATTTCTGGGAGAATGGAA+CGG 0.581431 4.1:+531263 None:intergenic
ATGCTTGAGGAATATATTCG+TGG 0.590085 4.1:-530810 MS.gene040137:CDS
AAATCGTCCATCAGCCGAAG+AGG 0.593627 4.1:-531181 MS.gene040137:intron
CAGAGAGTTGATTTATCGAG+AGG 0.594768 4.1:-530940 MS.gene040137:intron
GCATCTGTCACATTAGAACC+TGG 0.606001 4.1:+529633 None:intergenic
ACAGTCCAGAAAATAGTGGA+TGG 0.607008 4.1:+532009 None:intergenic
TCCAGTATACGAAGAGCCAA+AGG 0.607342 4.1:+531228 None:intergenic
GATCAATGTTCGACAAACCA+TGG 0.608025 4.1:+531036 None:intergenic
GACAGCATGCATCCTTACCT+CGG 0.612379 4.1:-530011 MS.gene040137:intron
TCAAAGTGTATAGACGTGAA+AGG 0.616724 4.1:-529528 MS.gene040137:CDS
GTGACAGATGCTGAAAACTC+AGG 0.622134 4.1:-529621 MS.gene040137:CDS
GTATCATCCCCAGATGCTTG+AGG 0.628011 4.1:-530823 MS.gene040137:CDS
AACCACATAGTTCAGGTGCA+CGG 0.635811 4.1:+531840 None:intergenic
ATATATTCCTCAAGCATCTG+GGG 0.640367 4.1:+530816 None:intergenic
CTTGAGGAATATATTCGTGG+TGG 0.647692 4.1:-530807 MS.gene040137:CDS
CTGTCACATTAGAACCTGGA+GGG 0.650301 4.1:+529637 None:intergenic
GATGCATGCTGTCTCTGCAG+TGG 0.671204 4.1:+530021 None:intergenic
TACCGTGCACCTGAACTATG+TGG 0.684866 4.1:-531842 MS.gene040137:CDS
TCTGTCACATTAGAACCTGG+AGG 0.685726 4.1:+529636 None:intergenic
ACCCTTGCAATGGACTCAGG+AGG 0.687313 4.1:+531568 None:intergenic
GCACTCTTCAACAAGCTACG+TGG 0.691225 4.1:+529564 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATTAAATAAAATGTATGT+AGG - chr4.1:530198-530217 MS.gene040137:intron 10.0%
!!! AAATATTTTTTTGTTGATAT+CGG - chr4.1:531462-531481 MS.gene040137:intron 10.0%
!!! ATTTAAAATTTTACAACAAA+TGG + chr4.1:530182-530201 None:intergenic 10.0%
!!! TTTAAAAAAGTATTTAATTC+TGG + chr4.1:531571-531590 None:intergenic 10.0%
!!! TTTAAAATTTTACAACAAAT+GGG + chr4.1:530181-530200 None:intergenic 10.0%
!! AATTAACTATTACAATGTAA+AGG + chr4.1:529660-529679 None:intergenic 15.0%
!! AGAATTTATATATATACAAG+AGG + chr4.1:529180-529199 None:intergenic 15.0%
!!! ATTTCAAAATTTACATGTTT+TGG - chr4.1:530380-530399 MS.gene040137:intron 15.0%
!!! TGTACATTATTATTTTGAAT+AGG - chr4.1:531783-531802 MS.gene040137:intron 15.0%
!! AGTTAAATATTTGAATGTAC+CGG + chr4.1:531892-531911 None:intergenic 20.0%
!! ATCTATATTTGGAAATTTCT+GGG + chr4.1:529281-529300 None:intergenic 20.0%
!! ATTAACCATCAATAATTTGA+TGG + chr4.1:530304-530323 None:intergenic 20.0%
!! GTTTATTTAAATAAATGCCA+TGG - chr4.1:529122-529141 MS.gene040137:intron 20.0%
!! TTAACCATCAATAATTTGAT+GGG + chr4.1:530303-530322 None:intergenic 20.0%
!!! AAAAGTATTTAATTCTGGAA+TGG + chr4.1:531566-531585 None:intergenic 20.0%
!!! AATTTACATGTTTTGGTTAT+TGG - chr4.1:530387-530406 MS.gene040137:intron 20.0%
!!! ACAAAATTGCAACTAATTTT+TGG + chr4.1:531106-531125 None:intergenic 20.0%
!!! ACGTTTATATAAACAGATTT+TGG - chr4.1:529682-529701 MS.gene040137:CDS 20.0%
!!! TATCTTATTTCAGAAATGAA+AGG + chr4.1:529877-529896 None:intergenic 20.0%
!!! TCTGTTTTTTATAAATTGTC+AGG - chr4.1:529938-529957 MS.gene040137:intron 20.0%
!!! TGAAAGTTTGTGATTTTAAA+AGG - chr4.1:530230-530249 MS.gene040137:intron 20.0%
!!! TTTATCTTCTTTTGCAATTA+TGG + chr4.1:531328-531347 None:intergenic 20.0%
! AAGAAATGTAATATGGAAAG+TGG - chr4.1:530347-530366 MS.gene040137:intron 25.0%
! AATCCAACTGAAAAACATAA+AGG + chr4.1:528575-528594 None:intergenic 25.0%
! AATTCTATGTTGTTGTATAG+TGG - chr4.1:530415-530434 MS.gene040137:intron 25.0%
! AGAAATGTAATATGGAAAGT+GGG - chr4.1:530348-530367 MS.gene040137:intron 25.0%
! AGTTAACTCTATCTTATCAA+GGG - chr4.1:531042-531061 MS.gene040137:CDS 25.0%
! ATCCAACTGAAAAACATAAA+GGG + chr4.1:528574-528593 None:intergenic 25.0%
! ATTCTATGTTGTTGTATAGT+GGG - chr4.1:530416-530435 MS.gene040137:intron 25.0%
! ATTTCCAAATATAGATCCTT+TGG - chr4.1:529285-529304 MS.gene040137:intron 25.0%
! GATCTATATTTGGAAATTTC+TGG + chr4.1:529282-529301 None:intergenic 25.0%
! GTTCCTTGAAAACATAATAT+AGG + chr4.1:529094-529113 None:intergenic 25.0%
! TAGTTAACTCTATCTTATCA+AGG - chr4.1:531041-531060 MS.gene040137:CDS 25.0%
! TCATGCATATAAATAGTCTT+AGG - chr4.1:531399-531418 MS.gene040137:intron 25.0%
! TGTACTTCAGAAATAAGTAT+CGG - chr4.1:531602-531621 MS.gene040137:CDS 25.0%
! TTCCTATCTATATTCTATAG+TGG - chr4.1:530122-530141 MS.gene040137:intron 25.0%
!! ATATGCAATTTAAGATCACT+TGG + chr4.1:531530-531549 None:intergenic 25.0%
!! CTTCCTATATTATGTTTTCA+AGG - chr4.1:529088-529107 MS.gene040137:intron 25.0%
!! GTCTTCTAAGAAATGTAATA+TGG - chr4.1:530340-530359 MS.gene040137:intron 25.0%
!! GTTTTCATTGTTTTCATTCT+TGG + chr4.1:530834-530853 None:intergenic 25.0%
!! TCAAAGTTTTACCTATTACA+AGG + chr4.1:530280-530299 None:intergenic 25.0%
!!! ATTTTTTATACCGATGCTTT+TGG + chr4.1:531636-531655 None:intergenic 25.0%
!!! TAATTTACCTACTTTTACCA+AGG - chr4.1:528644-528663 MS.gene040137:intron 25.0%
!!! TCAAACTCAAGTTTTGAAAT+GGG + chr4.1:529536-529555 None:intergenic 25.0%
!!! TGTTTTCAAGGAACAAATTA+CGG - chr4.1:529100-529119 MS.gene040137:intron 25.0%
!!! TTCAAACTCAAGTTTTGAAA+TGG + chr4.1:529537-529556 None:intergenic 25.0%
!!! TTTATGTTTTTCAGTTGGAT+TGG - chr4.1:528574-528593 MS.gene040137:intron 25.0%
AAAAAAGAACCACATAGTTC+AGG + chr4.1:528699-528718 None:intergenic 30.0%
AAACACAAACCAGGAAAATA+TGG + chr4.1:528745-528764 None:intergenic 30.0%
AAATTTCTGTGGTCCAAATT+AGG - chr4.1:530593-530612 MS.gene040137:intron 30.0%
AACAGAATCGTATGTTGAAA+TGG - chr4.1:531427-531446 MS.gene040137:intron 30.0%
AATATATTCCTCAAGCATCT+GGG + chr4.1:529717-529736 None:intergenic 30.0%
AATATTTAACGACCTGAAGA+TGG - chr4.1:531371-531390 MS.gene040137:intron 30.0%
AATGTTCGATGCAATACAAT+AGG - chr4.1:531653-531672 MS.gene040137:CDS 30.0%
AGCCACTATAGAATATAGAT+AGG + chr4.1:530127-530146 None:intergenic 30.0%
ATACACCTGGAATTGATATT+TGG - chr4.1:528833-528852 MS.gene040137:intron 30.0%
ATATTGACAAATACTTACCG+AGG + chr4.1:530538-530557 None:intergenic 30.0%
ATATTTGCAGAAATGCTTAC+TGG - chr4.1:528868-528887 MS.gene040137:intron 30.0%
ATGTAATATCAGTGCTTCAT+AGG - chr4.1:531684-531703 MS.gene040137:CDS 30.0%
ATTTATCTTCAAATCGTCTC+CGG - chr4.1:531870-531889 MS.gene040137:intron 30.0%
CAGTATTTAAACGCCTAATT+TGG + chr4.1:530609-530628 None:intergenic 30.0%
CTCTATGAAACCAATACTTT+CGG - chr4.1:531237-531256 MS.gene040137:CDS 30.0%
CTTTGGTAGGTAATCATATA+CGG + chr4.1:529388-529407 None:intergenic 30.0%
GTTAACTCTATCTTATCAAG+GGG - chr4.1:531043-531062 MS.gene040137:CDS 30.0%
TAATAAACTAACCCTTGCAA+TGG + chr4.1:528974-528993 None:intergenic 30.0%
TAGAGCAATGTCTAAAAAGT+AGG + chr4.1:531222-531241 None:intergenic 30.0%
TATCAATGAACTTTCTCCTT+TGG + chr4.1:529405-529424 None:intergenic 30.0%
TATTTGCAGAAATGCTTACT+GGG - chr4.1:528869-528888 MS.gene040137:intron 30.0%
TTAACTCTATCTTATCAAGG+GGG - chr4.1:531044-531063 MS.gene040137:CDS 30.0%
TTAAGCCAACTTATACTGTA+CGG - chr4.1:529904-529923 MS.gene040137:intron 30.0%
TTCTATGTTGTTGTATAGTG+GGG - chr4.1:530417-530436 MS.gene040137:intron 30.0%
TTGACCCATCAAATTATTGA+TGG - chr4.1:530296-530315 MS.gene040137:intron 30.0%
TTTGGTAGGTAATCATATAC+GGG + chr4.1:529387-529406 None:intergenic 30.0%
! AGTATTCGTTTTGTATTAGC+AGG - chr4.1:531946-531965 MS.gene040137:intron 30.0%
! GAGAAGAAATAATTTGAAGC+AGG + chr4.1:529638-529657 None:intergenic 30.0%
! TTTGTTATGCTTGTGATATC+AGG - chr4.1:529451-529470 MS.gene040137:intron 30.0%
!! TACCCTTTATGTTTTTCAGT+TGG - chr4.1:528569-528588 MS.gene040137:intron 30.0%
!! TATTTAATTCTGGAATGGCT+AGG + chr4.1:531561-531580 None:intergenic 30.0%
!!! ATTTTTTCGCCATATTTTCC+TGG - chr4.1:528733-528752 MS.gene040137:intron 30.0%
!!! CAAACTCAAGTTTTGAAATG+GGG + chr4.1:529535-529554 None:intergenic 30.0%
AACGATATTGAAATGCCAAC+TGG - chr4.1:530854-530873 MS.gene040137:intron 35.0%
AAGATAGAGTTAACTACCTC+TGG + chr4.1:531037-531056 None:intergenic 35.0%
AATGAACTTTCTCCTTTGGT+AGG + chr4.1:529401-529420 None:intergenic 35.0%
ACAGAAGGTTGTGATGTTAT+AGG + chr4.1:530068-530087 None:intergenic 35.0%
ACATAGTCCTTGGTAAAAGT+AGG + chr4.1:528654-528673 None:intergenic 35.0%
ACTTACAGTCCAGAAAATAG+TGG + chr4.1:528527-528546 None:intergenic 35.0%
AGAGCCAAAGGATCTATATT+TGG + chr4.1:529292-529311 None:intergenic 35.0%
AGGTGTATACTGCATAAGAA+AGG + chr4.1:528821-528840 None:intergenic 35.0%
ATATATTCCTCAAGCATCTG+GGG + chr4.1:529716-529735 None:intergenic 35.0%
ATGAAACCAATACTTTCGGT+TGG - chr4.1:531241-531260 MS.gene040137:CDS 35.0%
ATGCTCCAAATATCAATTCC+AGG + chr4.1:528841-528860 None:intergenic 35.0%
ATGCTTGAGGAATATATTCG+TGG - chr4.1:529719-529738 MS.gene040137:intron 35.0%
ATGTGAAGACTAAAGACAGA+AGG + chr4.1:530083-530102 None:intergenic 35.0%
ATTGTTTCCTGGGAAAAATG+TGG - chr4.1:528897-528916 MS.gene040137:intron 35.0%
ATTTGGACCACAGAAATTTC+TGG + chr4.1:530592-530611 None:intergenic 35.0%
CAGAAGGTTGTGATGTTATA+GGG + chr4.1:530067-530086 None:intergenic 35.0%
CGTATATGATTACCTACCAA+AGG - chr4.1:529386-529405 MS.gene040137:intron 35.0%
GAAAAATGTGGTGCATCAAT+TGG - chr4.1:528909-528928 MS.gene040137:intron 35.0%
GAAAACCGTACAGTATAAGT+TGG + chr4.1:529912-529931 None:intergenic 35.0%
GAAAGGAAGTAAAAATCCAG+AGG - chr4.1:531018-531037 MS.gene040137:CDS 35.0%
GAAGAACCACTCAAATGTAA+GGG - chr4.1:531503-531522 MS.gene040137:intron 35.0%
GAATATATTCCTCAAGCATC+TGG + chr4.1:529718-529737 None:intergenic 35.0%
GAGGAACATTATGGCAAAAA+AGG - chr4.1:530472-530491 MS.gene040137:intron 35.0%
GGTGTATACTGCATAAGAAA+GGG + chr4.1:528820-528839 None:intergenic 35.0%
GTAGGTAGATTGCAATTTGT+AGG + chr4.1:528602-528621 None:intergenic 35.0%
GTAGTAAAATGAAGCTTCCA+TGG + chr4.1:529142-529161 None:intergenic 35.0%
TAACTCTATCTTATCAAGGG+GGG - chr4.1:531045-531064 MS.gene040137:CDS 35.0%
TAGGCGTTTAAATACTGCAT+TGG - chr4.1:530612-530631 MS.gene040137:intron 35.0%
TCAAAGTGTATAGACGTGAA+AGG - chr4.1:531001-531020 MS.gene040137:CDS 35.0%
TCGTCATTGACCTCTATAAT+AGG + chr4.1:531974-531993 None:intergenic 35.0%
TGAAGAACCACTCAAATGTA+AGG - chr4.1:531502-531521 MS.gene040137:intron 35.0%
TTCGAAATGAGAAAGCTAGA+AGG - chr4.1:529215-529234 MS.gene040137:intron 35.0%
TTCGACAAACCATGGAAATA+AGG + chr4.1:529488-529507 None:intergenic 35.0%
TTGAGTTTGAATTCGAGAGA+AGG - chr4.1:529546-529565 MS.gene040137:CDS 35.0%
TTGATGCTCATCCTTGTAAT+AGG - chr4.1:530266-530285 MS.gene040137:intron 35.0%
TTTCTTATGCAGTATACACC+TGG - chr4.1:528820-528839 MS.gene040137:intron 35.0%
! AAATTTCTGGGAGAATGGAA+CGG + chr4.1:529269-529288 None:intergenic 35.0%
! AAGCTTCTTGTCTTCTTTTG+GGG - chr4.1:530656-530675 MS.gene040137:intron 35.0%
! AAGCTTGTTCTTCAAAATGC+AGG + chr4.1:530642-530661 None:intergenic 35.0%
! ACAAGCTTCTTGTCTTCTTT+TGG - chr4.1:530654-530673 MS.gene040137:intron 35.0%
! ACATTTTTCCCAGGAAACAA+TGG + chr4.1:528898-528917 None:intergenic 35.0%
! AGGTAATCATATACGGGTTA+TGG + chr4.1:529381-529400 None:intergenic 35.0%
! AGTTGATTTATCGAGAGGTA+CGG - chr4.1:529594-529613 MS.gene040137:CDS 35.0%
! CAAGCTTCTTGTCTTCTTTT+GGG - chr4.1:530655-530674 MS.gene040137:intron 35.0%
! GGAATTGATATTTGGAGCAT+TGG - chr4.1:528841-528860 MS.gene040137:intron 35.0%
! TCGTATGTTGAAATGGACTT+TGG - chr4.1:531434-531453 MS.gene040137:intron 35.0%
! TTGTCTGATCCTTATTTCCA+TGG - chr4.1:529476-529495 MS.gene040137:intron 35.0%
! TTTGGAAATTTCTGGGAGAA+TGG + chr4.1:529274-529293 None:intergenic 35.0%
!! GATATCATGACTGATTTGCT+TGG - chr4.1:528931-528950 MS.gene040137:intron 35.0%
!!! CTATTTTTTTAGCCCCCATA+GGG - chr4.1:530145-530164 MS.gene040137:intron 35.0%
AAACCAGCTTCATGTATCCT+AGG - chr4.1:529750-529769 MS.gene040137:intron 40.0%
ACAGTCATGCTTGTTTGTCA+TGG - chr4.1:529022-529041 MS.gene040137:intron 40.0%
ATATACAAGAGGACAGACAG+AGG + chr4.1:529169-529188 None:intergenic 40.0%
ATATCTGTCTGATACGTCAC+AGG - chr4.1:529845-529864 MS.gene040137:intron 40.0%
CTTAGCACCAGAAATTTCTG+TGG - chr4.1:530582-530601 MS.gene040137:intron 40.0%
CTTGAGGAATATATTCGTGG+TGG - chr4.1:529722-529741 MS.gene040137:intron 40.0%
GACAAATACTTACCGAGGTA+AGG + chr4.1:530533-530552 None:intergenic 40.0%
GATCAATGTTCGACAAACCA+TGG + chr4.1:529496-529515 None:intergenic 40.0%
GCACATCTTGAGGAACATTA+TGG - chr4.1:530463-530482 MS.gene040137:intron 40.0%
GCATACTAGCACATTTACCT+AGG + chr4.1:529770-529789 None:intergenic 40.0%
GCTATTATTACTACTCCCAC+CGG - chr4.1:530698-530717 MS.gene040137:intron 40.0%
GGTAAATGTGCTAGTATGCT+TGG - chr4.1:529771-529790 MS.gene040137:intron 40.0%
GTATCACACAAACACAAACC+AGG + chr4.1:528754-528773 None:intergenic 40.0%
GTGACGTATCAGACAGATAT+TGG + chr4.1:529845-529864 None:intergenic 40.0%
TACCAGAGAAAATGTTTCGC+AGG + chr4.1:530747-530766 None:intergenic 40.0%
TATCTGTCTGATACGTCACA+GGG - chr4.1:529846-529865 MS.gene040137:intron 40.0%
TTACCTAGGATACATGAAGC+TGG + chr4.1:529756-529775 None:intergenic 40.0%
TTAGCAGGAGCCTATTATAG+AGG - chr4.1:531961-531980 MS.gene040137:intron 40.0%
! AATTTCTGGGAGAATGGAAC+GGG + chr4.1:529268-529287 None:intergenic 40.0%
! ACAGTCCAGAAAATAGTGGA+TGG + chr4.1:528523-528542 None:intergenic 40.0%
! CAGAGAGTTGATTTATCGAG+AGG - chr4.1:529589-529608 MS.gene040137:CDS 40.0%
! CTCTGAAGATTTGATCCAGT+TGG + chr4.1:530872-530891 None:intergenic 40.0%
! GCAATTTTGTGTCGAGTATC+TGG - chr4.1:531116-531135 MS.gene040137:intron 40.0%
! GGTGAAGTATCCAAAAGCAT+CGG - chr4.1:531623-531642 MS.gene040137:CDS 40.0%
! TGCATGACTTTTCCATCTTC+AGG + chr4.1:531386-531405 None:intergenic 40.0%
! TTACAACAAATGGGTGCCAT+CGG + chr4.1:530172-530191 None:intergenic 40.0%
! TTGCCAATCTTATCTGGAAC+CGG + chr4.1:530720-530739 None:intergenic 40.0%
!! ACACTTTGAAGCACTAATGC+TGG + chr4.1:530990-531009 None:intergenic 40.0%
!! CACAGAAATTTCTGGTGCTA+AGG + chr4.1:530584-530603 None:intergenic 40.0%
!!! AAGTTTTGAAATGGGGTGAG+TGG + chr4.1:529528-529547 None:intergenic 40.0%
!!! GCTATTTTTTTAGCCCCCAT+AGG - chr4.1:530144-530163 MS.gene040137:intron 40.0%
AACCACATAGTTCAGGTGCA+CGG + chr4.1:528692-528711 None:intergenic 45.0%
AGCATGCAGTTTAGAGAGGT+AGG + chr4.1:528620-528639 None:intergenic 45.0%
AGGACTATGTTGCAACTAGG+TGG - chr4.1:528664-528683 MS.gene040137:intron 45.0%
AGTCAGCATGCAGTTTAGAG+AGG + chr4.1:528624-528643 None:intergenic 45.0%
CCAAGGACTATGTTGCAACT+AGG - chr4.1:528661-528680 MS.gene040137:intron 45.0%
CCTAGTTGCAACATAGTCCT+TGG + chr4.1:528664-528683 None:intergenic 45.0%
CTGTCACATTAGAACCTGGA+GGG + chr4.1:530895-530914 None:intergenic 45.0%
CTTGGACCCTTACATTTGAG+TGG + chr4.1:531512-531531 None:intergenic 45.0%
GAAAACTCAGGCGCTCAAAA+TGG - chr4.1:530920-530939 MS.gene040137:intron 45.0%
GAGTGGTTCTTCAACTTCTC+TGG + chr4.1:531495-531514 None:intergenic 45.0%
GCATCTGTCACATTAGAACC+TGG + chr4.1:530899-530918 None:intergenic 45.0%
GGCATGTTGCCAATCTTATC+TGG + chr4.1:530726-530745 None:intergenic 45.0%
GTGACAGATGCTGAAAACTC+AGG - chr4.1:530908-530927 MS.gene040137:intron 45.0%
GTTATGGAGACCAACCTCTT+CGG + chr4.1:529365-529384 None:intergenic 45.0%
TCCAGTATACGAAGAGCCAA+AGG + chr4.1:529304-529323 None:intergenic 45.0%
TCTGTCACATTAGAACCTGG+AGG + chr4.1:530896-530915 None:intergenic 45.0%
! AAGCTACGTGGACTGTAGTT+TGG + chr4.1:530956-530975 None:intergenic 45.0%
! ACGCTCCATCCACTATTTTC+TGG - chr4.1:528515-528534 MS.gene040137:CDS 45.0%
! CAATCTTATCTGGAACCGGT+GGG + chr4.1:530716-530735 None:intergenic 45.0%
! CAGCATCCAACCGAAAGTAT+TGG + chr4.1:531250-531269 None:intergenic 45.0%
! TCTTCAACTTCTCTGGCTCA+AGG + chr4.1:531488-531507 None:intergenic 45.0%
! TGATGCACCACATTTTTCCC+AGG + chr4.1:528907-528926 None:intergenic 45.0%
! TGCCTGCGAAACATTTTCTC+TGG - chr4.1:530742-530761 MS.gene040137:intron 45.0%
! TTTGAAATGGGGTGAGTGGA+TGG + chr4.1:529524-529543 None:intergenic 45.0%
!! TCCTTTGGCTCTTCGTATAC+TGG - chr4.1:529300-529319 MS.gene040137:intron 45.0%
!! TCGGCTGATGGACGATTTTT+AGG + chr4.1:529346-529365 None:intergenic 45.0%
AAATCGTCCATCAGCCGAAG+AGG - chr4.1:529348-529367 MS.gene040137:intron 50.0%
AAGGGGGGAGATCTTAGTTG+AGG - chr4.1:531060-531079 MS.gene040137:intron 50.0%
ACTGGGAGACCATTGTTTCC+TGG - chr4.1:528886-528905 MS.gene040137:intron 50.0%
CTGGGAGACCATTGTTTCCT+GGG - chr4.1:528887-528906 MS.gene040137:intron 50.0%
GACAGCATGCATCCTTACCT+CGG - chr4.1:530518-530537 MS.gene040137:intron 50.0%
GCACTCTTCAACAAGCTACG+TGG + chr4.1:530968-530987 None:intergenic 50.0%
GCAGGAGTGAGTGAAATGCA+TGG + chr4.1:529620-529639 None:intergenic 50.0%
GCGACAGTTTGCACATCTTG+AGG - chr4.1:530453-530472 MS.gene040137:intron 50.0%
GTATCATCCCCAGATGCTTG+AGG - chr4.1:529706-529725 MS.gene040137:CDS 50.0%
TACCGTGCACCTGAACTATG+TGG - chr4.1:528687-528706 MS.gene040137:intron 50.0%
TCAAATCTTCAGAGCCCTCC+AGG - chr4.1:530878-530897 MS.gene040137:intron 50.0%
TCCTCCTGAGTCCATTGCAA+GGG - chr4.1:528960-528979 MS.gene040137:intron 50.0%
! CCAATCTTATCTGGAACCGG+TGG + chr4.1:530717-530736 None:intergenic 50.0%
! CTAACCCTTGCAATGGACTC+AGG + chr4.1:528967-528986 None:intergenic 50.0%
!! CCACCGGTTCCAGATAAGAT+TGG - chr4.1:530714-530733 MS.gene040137:intron 50.0%
AGACCAACCTCTTCGGCTGA+TGG + chr4.1:529358-529377 None:intergenic 55.0%
CTCCTCCTGAGTCCATTGCA+AGG - chr4.1:528959-528978 MS.gene040137:intron 55.0%
GATGCATGCTGTCTCTGCAG+TGG + chr4.1:530511-530530 None:intergenic 55.0%
GGGGGAGATCTTAGTTGAGG+TGG - chr4.1:531063-531082 MS.gene040137:intron 55.0%
! ACCCTTGCAATGGACTCAGG+AGG + chr4.1:528964-528983 None:intergenic 55.0%
! CTTGCAATGGACTCAGGAGG+AGG + chr4.1:528961-528980 None:intergenic 55.0%
CGTCCATCAGCCGAAGAGGT+TGG - chr4.1:529352-529371 MS.gene040137:intron 60.0%
TTAGCCCCCATAGGGACCGA+TGG - chr4.1:530153-530172 MS.gene040137:intron 60.0%
! ATGGGTGCCATCGGTCCCTA+TGG + chr4.1:530163-530182 None:intergenic 60.0%
! TGGGTGCCATCGGTCCCTAT+GGG + chr4.1:530162-530181 None:intergenic 60.0%
! GGGTGCCATCGGTCCCTATG+GGG + chr4.1:530161-530180 None:intergenic 65.0%
! GGTGCCATCGGTCCCTATGG+GGG + chr4.1:530160-530179 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr4.1 gene 528512 532039 528512 ID=MS.gene040137
chr4.1 mRNA 528512 532039 528512 ID=MS.gene040137.t1;Parent=MS.gene040137
chr4.1 exon 532011 532039 532011 ID=MS.gene040137.t1.exon1;Parent=MS.gene040137.t1
chr4.1 CDS 532011 532039 532011 ID=cds.MS.gene040137.t1;Parent=MS.gene040137.t1
chr4.1 exon 531826 531868 531826 ID=MS.gene040137.t1.exon2;Parent=MS.gene040137.t1
chr4.1 CDS 531826 531868 531826 ID=cds.MS.gene040137.t1;Parent=MS.gene040137.t1
chr4.1 exon 531570 531719 531570 ID=MS.gene040137.t1.exon3;Parent=MS.gene040137.t1
chr4.1 CDS 531570 531719 531570 ID=cds.MS.gene040137.t1;Parent=MS.gene040137.t1
chr4.1 exon 531182 531337 531182 ID=MS.gene040137.t1.exon4;Parent=MS.gene040137.t1
chr4.1 CDS 531182 531337 531182 ID=cds.MS.gene040137.t1;Parent=MS.gene040137.t1
chr4.1 exon 530941 531078 530941 ID=MS.gene040137.t1.exon5;Parent=MS.gene040137.t1
chr4.1 CDS 530941 531078 530941 ID=cds.MS.gene040137.t1;Parent=MS.gene040137.t1
chr4.1 exon 530780 530853 530780 ID=MS.gene040137.t1.exon6;Parent=MS.gene040137.t1
chr4.1 CDS 530780 530853 530780 ID=cds.MS.gene040137.t1;Parent=MS.gene040137.t1
chr4.1 exon 530012 530116 530012 ID=MS.gene040137.t1.exon7;Parent=MS.gene040137.t1
chr4.1 CDS 530012 530116 530012 ID=cds.MS.gene040137.t1;Parent=MS.gene040137.t1
chr4.1 exon 529512 529737 529512 ID=MS.gene040137.t1.exon8;Parent=MS.gene040137.t1
chr4.1 CDS 529512 529737 529512 ID=cds.MS.gene040137.t1;Parent=MS.gene040137.t1
chr4.1 exon 528512 528583 528512 ID=MS.gene040137.t1.exon9;Parent=MS.gene040137.t1
chr4.1 CDS 528512 528583 528512 ID=cds.MS.gene040137.t1;Parent=MS.gene040137.t1
Gene Sequence

>MS.gene040137

ATGACGCTCCATCCACTATTTTCTGGACTGTAAGTACTCTAATATGCAACTATGTTTTACCCTTTATGTTTTTCAGTTGGATTGGAACCTACAAATTGCAATCTACCTACCTCTCTAAACTGCATGCTGACTTAATTTACCTACTTTTACCAAGGACTATGTTGCAACTAGGTGGTACCGTGCACCTGAACTATGTGGTTCTTTTTTCTCAAAAGTAAGTAATTTTTTCGCCATATTTTCCTGGTTTGTGTTTGTGTGATACAAGAACTTGATGTATTGAAATATGTATGTATGTAATTTATATTCCCTTTCTTATGCAGTATACACCTGGAATTGATATTTGGAGCATTGGATGCATATTTGCAGAAATGCTTACTGGGAGACCATTGTTTCCTGGGAAAAATGTGGTGCATCAATTGGATATCATGACTGATTTGCTTGGCACTCCTCCTCCTGAGTCCATTGCAAGGGTTAGTTTATTAAAATTTACTCAGCAATTTTCTGAAATCAACAGTCATGCTTGTTTGTCATGGTGTAGTGAGATTAATGCTGAATTTCTAGTGTTTCTAACAAATTCTTCCTATATTATGTTTTCAAGGAACAAATTACGGTTTATTTAAATAAATGCCATGGAAGCTTCATTTTACTACTTCTCCTCTGTCTGTCCTCTTGTATATATATAAATTCTTAATTTTGTTACAGATTCGAAATGAGAAAGCTAGAAGGTATCTTAACAGCATGCGAAAAAAGCAACCCGTTCCATTCTCCCAGAAATTTCCAAATATAGATCCTTTGGCTCTTCGTATACTGGAGCGCTTACTTGCATTTGATCCTAAAAATCGTCCATCAGCCGAAGAGGTTGGTCTCCATAACCCGTATATGATTACCTACCAAAGGAGAAAGTTCATTGATAAATTACAAAGAAGAAATTTAATTTGTTTTGTTATGCTTGTGATATCAGGCATTGTCTGATCCTTATTTCCATGGTTTGTCGAACATTGATCGTGAACCATCCACTCACCCCATTTCAAAACTTGAGTTTGAATTCGAGAGAAGGAAAGTGACTAAAGATGATGTCAGAGAGTTGATTTATCGAGAGGTACGGCCATGCATTTCACTCACTCCTGCTTCAAATTATTTCTTCTCCTTTACATTGTAATAGTTAATTATACGTTTATATAAACAGATTTTGGAGTATCATCCCCAGATGCTTGAGGAATATATTCGTGGTGGAGATCAAACCAGCTTCATGTATCCTAGGTAAATGTGCTAGTATGCTTGGTAGTTTGTTGAATGCTTGATACTCACATATATTAATGAAGATGTGCGTCCAATATCTGTCTGATACGTCACAGGGCATAGCCTTTCATTTCTGAAATAAGATAAAAGATATTAAGCCAACTTATACTGTACGGTTTTCACAATATCTGTTTTTTATAAATTGTCAGGAGCTCTTGTATGAGTTTAATGTTGTTGCATTGAGATTATGTTTATTGTATTAATTTATTTGCAAATTTCTACACAATTATAAATGCTTAAATAAGTCTTTAGTCCCTATAACATCACAACCTTCTGTCTTTAGTCTTCACATGAATTTTATTCAATTTCAGTTCCTATCTATATTCTATAGTGGCTATTTTTTTAGCCCCCATAGGGACCGATGGCACCCATTTGTTGTAAAATTTTAAATTAAATAAAATGTATGTAGGAACTAAATTTGAAAGTTTGTGATTTTAAAAGGACTAAAACTTTTTTTGATGCTCATCCTTGTAATAGGTAAAACTTTGACCCATCAAATTATTGATGGTTAATTTTCTGCATTTTGCATGTCTTCTAAGAAATGTAATATGGAAAGTGGGCTCTTTTGAATTTCAAAATTTACATGTTTTGGTTATTGGTTAGTAATTCTATGTTGTTGTATAGTGGGGTTGATCGATTCAAGCGACAGTTTGCACATCTTGAGGAACATTATGGCAAAAAAGGCGAACGAATCTCACCACTGCAGAGACAGCATGCATCCTTACCTCGGTAAGTATTTGTCAATATTTTATTCTCTGAGCAGTTTCTAGCCTTAGCACCAGAAATTTCTGTGGTCCAAATTAGGCGTTTAAATACTGCATTGGCTCACCTGCATTTTGAAGAACAAGCTTCTTGTCTTCTTTTGGGGATTTATGTGTTTAATATGTGCTATTATTACTACTCCCACCGGTTCCAGATAAGATTGGCAACATGCCTGCGAAACATTTTCTCTGGTATTGTGTGAAGTCATATGCGTTAAATACTGCAATTTCACTTTTTGCAGAGAGCGAGTTCATACTTCCAAGAATGAAAACAATGAAAACAACGATATTGAAATGCCAACTGGATCAAATCTTCAGAGCCCTCCAGGTTCTAATGTGACAGATGCTGAAAACTCAGGCGCTCAAAATGGACTCGCAAAGCCAAACTACAGTCCACGTAGCTTGTTGAAGAGTGCCAGCATTAGTGCTTCAAAGTGTATAGACGTGAAAGGAAGTAAAAATCCAGAGGTAGTTAACTCTATCTTATCAAGGGGGGAGATCTTAGTTGAGGTGGTGAAATAATAATAATATCCAAAAATTAGTTGCAATTTTGTGTCGAGTATCTGGATATAATACAATATAGCGATGATTATTATTTCATATAACATAATATATACAATTGCAGTTCTATAAATTTAAAATAAGAACCTACTTTTTAGACATTGCTCTATGAAACCAATACTTTCGGTTGGATGCTGCGTGTTTGAACTTTAGAATAAAAATCTAACTAAACTGAAGATATTTACTATTATGCCATAATTGCAAAAGAAGATAAATATGCAGCAATTTTTTTAAAGCTAATATTTAACGACCTGAAGATGGAAAAGTCATGCATATAAATAGTCTTAGGCAGAGAACAGAATCGTATGTTGAAATGGACTTTGGATAAAAAATATTTTTTTGTTGATATCGGCCTTGAGCCAGAGAAGTTGAAGAACCACTCAAATGTAAGGGTCCAAGTGATCTTAAATTGCATATCTAAGTTACCTAGCCATTCCAGAATTAAATACTTTTTTAAAAAGTTGACTTGTGTACTTCAGAAATAAGTATCGGTGAAGTATCCAAAAGCATCGGTATAAAAAATGTTCGATGCAATACAATAGGTGAAGACAATGTAATATCAGTGCTTCATAGGTTCTGTCATATAAGATGTTTTTCATTTTATTGAGATTTTCTACAATAGTCTTACAATATAAGCTATCAAGAATTTGTGTACATTATTATTTTGAATAGGAAAGATACAGTTTATTATTGTTTTGTTAAGTCTGATTTTAATTGTGAATCTCTGTAAAATCGACATTTATCTTCAAATCGTCTCCGGTACATTCAAATATTTAACTAAATGAAATGCATTTCTGTCTAGTTTGTTTTGACAGTATTCGTTTTGTATTAGCAGGAGCCTATTATAGAGGTCAATGACGACGCAGCAGATGAATTGACAGATAACATTGCTGCCATGCATGCTTAG
Protein sequence

>MS.gene040137.t1

MTLHPLFSGLWYRAPELCGSFFSKYTPGIDIWSIGCIFAEMLTGRPLFPGKNVVHQLDIMTDLLGTPPPESIARIRNEKARRYLNSMRKKQPVPFSQKFPNIDPLALRILERLLAFDPKNRPSAEEALSDPYFHGLSNIDREPSTHPISKLEFEFERRKVTKDDVRELIYREILEYHPQMLEEYIRGGDQTSFMYPSGVDRFKRQFAHLEEHYGKKGERISPLQRQHASLPRERVHTSKNENNENNDIEMPTGSNLQSPPGSNVTDAENSGAQNGLAKPNYSPRSLLKSASISASKCIDVKGSKNPEEPIIEVNDDAADELTDNIAAMHA