Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene040247.t1 | XP_024632961.1 | 84.1 | 616 | 74 | 2 | 1 | 592 | 1 | 616 | 2.90E-301 | 1043.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene040247.t1 | Q9SZL8 | 27.7 | 494 | 333 | 7 | 32 | 523 | 70 | 541 | 9.1e-54 | 213.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene040247.t1 | D3YBB9 | 76.4 | 594 | 131 | 2 | 1 | 587 | 49 | 640 | 8.8e-268 | 932.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene040247.t1 | TF | FAR1 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene040247.t1 | MTR_0558s0020 | 86.486 | 296 | 39 | 1 | 1 | 295 | 1 | 296 | 0.0 | 535 |
| MS.gene040247.t1 | MTR_1g083640 | 82.042 | 284 | 35 | 1 | 1 | 268 | 1 | 284 | 9.75e-170 | 484 |
| MS.gene040247.t1 | MTR_8g446020 | 72.881 | 295 | 41 | 1 | 1 | 295 | 1 | 256 | 1.04e-149 | 431 |
| MS.gene040247.t1 | MTR_2g014100 | 81.633 | 245 | 36 | 1 | 1 | 236 | 1 | 245 | 8.25e-143 | 414 |
| MS.gene040247.t1 | MTR_6g090505 | 82.278 | 237 | 42 | 0 | 65 | 301 | 1 | 237 | 2.14e-140 | 412 |
| MS.gene040247.t1 | MTR_6g090505 | 68.627 | 102 | 5 | 3 | 396 | 495 | 230 | 306 | 4.53e-34 | 133 |
| MS.gene040247.t1 | MTR_0337s0040 | 71.923 | 260 | 33 | 2 | 1 | 259 | 1 | 221 | 1.05e-123 | 364 |
| MS.gene040247.t1 | MTR_3g008240 | 83.744 | 203 | 32 | 1 | 1 | 202 | 1 | 203 | 4.91e-118 | 348 |
| MS.gene040247.t1 | MTR_4g040430 | 83.168 | 202 | 30 | 1 | 1 | 202 | 1 | 198 | 2.59e-117 | 347 |
| MS.gene040247.t1 | MTR_5g071590 | 72.778 | 180 | 36 | 2 | 1 | 167 | 1 | 180 | 4.42e-89 | 274 |
| MS.gene040247.t1 | MTR_1g055240 | 85.915 | 142 | 20 | 0 | 91 | 232 | 3 | 144 | 3.24e-85 | 262 |
| MS.gene040247.t1 | MTR_0019s0290 | 80.263 | 152 | 30 | 0 | 82 | 233 | 9 | 160 | 2.59e-84 | 260 |
| MS.gene040247.t1 | MTR_0337s0060 | 72.932 | 133 | 23 | 1 | 447 | 579 | 21 | 140 | 6.01e-60 | 199 |
| MS.gene040247.t1 | MTR_1281s0010 | 78.899 | 109 | 23 | 0 | 19 | 127 | 1 | 109 | 1.58e-55 | 183 |
| MS.gene040247.t1 | MTR_6g051425 | 31.447 | 318 | 187 | 6 | 40 | 341 | 22 | 324 | 3.24e-37 | 141 |
| MS.gene040247.t1 | MTR_4g008820 | 71.000 | 100 | 28 | 1 | 1 | 99 | 125 | 224 | 8.86e-33 | 134 |
| MS.gene040247.t1 | MTR_8g046060 | 78.409 | 88 | 10 | 2 | 1 | 79 | 91 | 178 | 2.83e-32 | 124 |
| MS.gene040247.t1 | MTR_1g070355 | 25.926 | 324 | 219 | 6 | 41 | 362 | 80 | 384 | 3.13e-16 | 82.4 |
| MS.gene040247.t1 | MTR_0402s0040 | 25.405 | 185 | 119 | 4 | 49 | 233 | 40 | 205 | 7.33e-15 | 77.8 |
| MS.gene040247.t1 | MTR_1g013060 | 30.415 | 217 | 130 | 8 | 40 | 253 | 29 | 227 | 6.24e-13 | 68.9 |
| MS.gene040247.t1 | MTR_4g035820 | 22.414 | 290 | 192 | 7 | 17 | 299 | 61 | 324 | 2.73e-12 | 70.1 |
| MS.gene040247.t1 | MTR_0337s0050 | 72.222 | 36 | 10 | 0 | 259 | 294 | 14 | 49 | 2.01e-11 | 60.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene040247.t1 | AT4G38180 | 27.733 | 494 | 333 | 7 | 32 | 523 | 70 | 541 | 1.26e-58 | 210 |
| MS.gene040247.t1 | AT1G76320 | 26.490 | 453 | 291 | 11 | 50 | 496 | 12 | 428 | 1.23e-39 | 154 |
| MS.gene040247.t1 | AT1G76320 | 26.490 | 453 | 291 | 11 | 50 | 496 | 12 | 428 | 3.37e-39 | 153 |
| MS.gene040247.t1 | AT1G76320 | 26.490 | 453 | 291 | 11 | 50 | 496 | 12 | 428 | 3.95e-39 | 153 |
| MS.gene040247.t1 | AT1G76320 | 26.490 | 453 | 291 | 11 | 50 | 496 | 12 | 428 | 3.95e-39 | 153 |
| MS.gene040247.t1 | AT3G06250 | 25.581 | 516 | 303 | 13 | 34 | 540 | 189 | 632 | 6.37e-39 | 153 |
| MS.gene040247.t1 | AT3G06250 | 25.581 | 516 | 303 | 13 | 34 | 540 | 189 | 632 | 6.37e-39 | 153 |
| MS.gene040247.t1 | AT3G06250 | 25.581 | 516 | 303 | 13 | 34 | 540 | 189 | 632 | 6.37e-39 | 153 |
| MS.gene040247.t1 | AT4G15090 | 24.738 | 477 | 331 | 9 | 50 | 523 | 66 | 517 | 1.82e-38 | 152 |
| MS.gene040247.t1 | AT4G15090 | 24.738 | 477 | 331 | 9 | 50 | 523 | 66 | 517 | 1.82e-38 | 152 |
| MS.gene040247.t1 | AT4G15090 | 24.738 | 477 | 331 | 9 | 50 | 523 | 66 | 517 | 1.82e-38 | 152 |
| MS.gene040247.t1 | AT4G15090 | 24.738 | 477 | 331 | 9 | 50 | 523 | 66 | 517 | 1.82e-38 | 152 |
| MS.gene040247.t1 | AT4G15090 | 24.738 | 477 | 331 | 9 | 50 | 523 | 66 | 517 | 1.82e-38 | 152 |
| MS.gene040247.t1 | AT1G10240 | 25.451 | 499 | 333 | 15 | 49 | 536 | 62 | 532 | 7.62e-36 | 143 |
| MS.gene040247.t1 | AT1G10240 | 25.451 | 499 | 333 | 15 | 49 | 536 | 62 | 532 | 7.62e-36 | 143 |
| MS.gene040247.t1 | AT4G38170 | 27.397 | 292 | 200 | 5 | 235 | 523 | 24 | 306 | 2.87e-34 | 137 |
| MS.gene040247.t1 | AT5G28530 | 24.085 | 519 | 347 | 13 | 40 | 540 | 60 | 549 | 5.93e-34 | 137 |
| MS.gene040247.t1 | AT5G18960 | 24.432 | 528 | 317 | 15 | 24 | 540 | 200 | 656 | 8.62e-34 | 137 |
| MS.gene040247.t1 | AT5G18960 | 24.432 | 528 | 317 | 15 | 24 | 540 | 200 | 656 | 8.62e-34 | 137 |
| MS.gene040247.t1 | AT3G22170 | 22.626 | 495 | 341 | 10 | 34 | 523 | 69 | 526 | 1.08e-33 | 137 |
| MS.gene040247.t1 | AT3G22170 | 22.626 | 495 | 341 | 10 | 34 | 523 | 69 | 526 | 1.08e-33 | 137 |
| MS.gene040247.t1 | AT5G28530 | 23.892 | 519 | 344 | 14 | 40 | 540 | 60 | 545 | 2.78e-33 | 135 |
| MS.gene040247.t1 | AT5G28530 | 23.892 | 519 | 344 | 14 | 40 | 540 | 60 | 545 | 2.78e-33 | 135 |
| MS.gene040247.t1 | AT2G27110 | 25.806 | 403 | 271 | 9 | 127 | 524 | 108 | 487 | 3.51e-33 | 135 |
| MS.gene040247.t1 | AT2G27110 | 25.806 | 403 | 271 | 9 | 127 | 524 | 108 | 487 | 3.51e-33 | 135 |
| MS.gene040247.t1 | AT2G27110 | 27.707 | 314 | 216 | 5 | 213 | 523 | 36 | 341 | 1.81e-32 | 133 |
| MS.gene040247.t1 | AT1G80010 | 24.847 | 491 | 318 | 16 | 41 | 514 | 101 | 557 | 3.91e-29 | 123 |
| MS.gene040247.t1 | AT2G32250 | 23.857 | 503 | 303 | 13 | 1 | 496 | 8 | 437 | 8.36e-29 | 122 |
| MS.gene040247.t1 | AT2G32250 | 23.857 | 503 | 303 | 13 | 1 | 496 | 8 | 437 | 1.63e-28 | 121 |
| MS.gene040247.t1 | AT2G32250 | 23.857 | 503 | 303 | 13 | 1 | 496 | 8 | 437 | 1.63e-28 | 121 |
| MS.gene040247.t1 | AT2G32250 | 23.857 | 503 | 303 | 13 | 1 | 496 | 8 | 437 | 1.63e-28 | 121 |
| MS.gene040247.t1 | AT2G32250 | 23.857 | 503 | 303 | 13 | 1 | 496 | 8 | 437 | 1.67e-28 | 121 |
| MS.gene040247.t1 | AT2G32250 | 23.857 | 503 | 303 | 13 | 1 | 496 | 8 | 437 | 1.67e-28 | 121 |
| MS.gene040247.t1 | AT2G32250 | 24.229 | 454 | 268 | 11 | 50 | 496 | 12 | 396 | 3.89e-28 | 120 |
| MS.gene040247.t1 | AT2G32250 | 24.229 | 454 | 268 | 11 | 50 | 496 | 12 | 396 | 3.91e-28 | 120 |
| MS.gene040247.t1 | AT1G52520 | 22.702 | 533 | 359 | 15 | 41 | 557 | 91 | 586 | 4.44e-27 | 117 |
| MS.gene040247.t1 | AT4G19990 | 23.620 | 453 | 283 | 11 | 41 | 483 | 27 | 426 | 1.16e-25 | 112 |
| MS.gene040247.t1 | AT4G19990 | 23.620 | 453 | 283 | 11 | 41 | 483 | 27 | 426 | 1.18e-25 | 112 |
| MS.gene040247.t1 | AT4G19990 | 23.620 | 453 | 283 | 11 | 41 | 483 | 27 | 426 | 1.18e-25 | 112 |
| MS.gene040247.t1 | AT4G19990 | 23.620 | 453 | 283 | 11 | 41 | 483 | 41 | 440 | 1.25e-25 | 112 |
| MS.gene040247.t1 | AT4G19990 | 23.620 | 453 | 283 | 11 | 41 | 483 | 27 | 426 | 1.99e-25 | 112 |
| MS.gene040247.t1 | AT4G19990 | 23.620 | 453 | 283 | 11 | 41 | 483 | 27 | 426 | 1.99e-25 | 112 |
| MS.gene040247.t1 | AT4G19990 | 27.612 | 268 | 187 | 4 | 219 | 483 | 106 | 369 | 1.06e-24 | 109 |
Find 84 sgRNAs with CRISPR-Local
Find 137 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTCGATGAGTTAACTAATT+TGG | 0.156761 | 7.1:+65264153 | MS.gene040247:CDS |
| CTTTAGTCATTTCAACATTA+TGG | 0.194287 | 7.1:+65264420 | MS.gene040247:CDS |
| TACATTTCAGCTGCCTTTCT+TGG | 0.197151 | 7.1:+65263872 | MS.gene040247:intron |
| CAACAAGATTATGCTCTATT+TGG | 0.198611 | 7.1:+65263359 | MS.gene040247:CDS |
| CATCGTAAGAGTGTGTTATT+TGG | 0.276792 | 7.1:+65263905 | MS.gene040247:CDS |
| TATGGTTTGAGGTTTCTTAT+TGG | 0.280533 | 7.1:-65263999 | None:intergenic |
| AATCAGATTTCGACTACAAT+TGG | 0.318540 | 7.1:+65264194 | MS.gene040247:CDS |
| TGGTCTTTGCTCATGGCATA+TGG | 0.321670 | 7.1:+65264084 | MS.gene040247:CDS |
| ACCAGCCTGGTCTGTGTATA+TGG | 0.341000 | 7.1:-65264017 | None:intergenic |
| GCCGATATTTATTGTTTGTT+CGG | 0.341758 | 7.1:-65263409 | None:intergenic |
| GAGGGATAATCATGCTGATT+TGG | 0.346844 | 7.1:+65264453 | MS.gene040247:CDS |
| TTCTCATACTTAACAAGAAC+TGG | 0.347455 | 7.1:-65262879 | None:intergenic |
| GGTTTCGAATGTTGATGTTT+TGG | 0.354913 | 7.1:+65264717 | MS.gene040247:CDS |
| TATGCATTGGTCTTCAGTTT+GGG | 0.370760 | 7.1:+65264294 | MS.gene040247:CDS |
| AACAATAAATATCGGCCATT+AGG | 0.388497 | 7.1:+65263416 | MS.gene040247:CDS |
| TCATGCTGATTTGGACTTCA+AGG | 0.389304 | 7.1:+65264462 | MS.gene040247:CDS |
| ACCGAACAAACAATAAATAT+CGG | 0.389395 | 7.1:+65263408 | MS.gene040247:CDS |
| GTATGCATTGGTCTTCAGTT+TGG | 0.392120 | 7.1:+65264293 | MS.gene040247:CDS |
| CCATGATTCTTTATCACTAA+AGG | 0.406174 | 7.1:-65262640 | None:intergenic |
| TAAAGAATCATGGAAGTCTT+TGG | 0.408500 | 7.1:+65262650 | MS.gene040247:CDS |
| TTCCTTCAAATACTATTATG+AGG | 0.414157 | 7.1:+65264594 | MS.gene040247:CDS |
| ATAACACTGGATTCTCTGTT+AGG | 0.417808 | 7.1:+65262721 | MS.gene040247:CDS |
| CGAGAAGTAAATGAAGTTCA+AGG | 0.430014 | 7.1:+65263056 | MS.gene040247:CDS |
| AGCTGGAATATATTTGAAGT+TGG | 0.433136 | 7.1:+65262938 | MS.gene040247:CDS |
| TGAATGTCTATAAGATATAT+AGG | 0.445219 | 7.1:+65262970 | MS.gene040247:CDS |
| TGGTCTGTGTATATGGTTTG+AGG | 0.447350 | 7.1:-65264010 | None:intergenic |
| GAAAGGGTTGGTTGTAAAGC+TGG | 0.447509 | 7.1:+65262921 | MS.gene040247:CDS |
| TCTAATAACAACTCGTCAAA+AGG | 0.447835 | 7.1:+65263199 | MS.gene040247:CDS |
| CGTTATGCTTGTAACAAAGA+AGG | 0.449439 | 7.1:+65262804 | MS.gene040247:CDS |
| GCTTTAATAAATTCTAAAGC+TGG | 0.450264 | 7.1:+65263086 | MS.gene040247:CDS |
| GGCCTACTTCGGACTTTAAG+TGG | 0.458978 | 7.1:+65264248 | MS.gene040247:CDS |
| CTCAAGTAGCGCAAATGCTC+TGG | 0.460440 | 7.1:-65263026 | None:intergenic |
| ACAAAATAAGAAATCGGATA+AGG | 0.469178 | 7.1:+65262770 | MS.gene040247:CDS |
| ATCCGAGAGTGGACAATTGA+CGG | 0.474201 | 7.1:+65262575 | MS.gene040247:CDS |
| GAAGTGATGGGTCAAGGAGT+TGG | 0.484292 | 7.1:+65263131 | MS.gene040247:CDS |
| CTCCTCATAATAGTATTTGA+AGG | 0.485089 | 7.1:-65264596 | None:intergenic |
| TTTAATTATGCATATAACAC+TGG | 0.485542 | 7.1:+65262708 | MS.gene040247:CDS |
| CAATTCACAAAATAAGAAAT+CGG | 0.490263 | 7.1:+65262764 | MS.gene040247:CDS |
| TATGAGGAGGACACAACAAA+AGG | 0.490908 | 7.1:+65264610 | MS.gene040247:CDS |
| ATGATTGTCAAAACCAAGAA+AGG | 0.491378 | 7.1:-65263885 | None:intergenic |
| ATCAGATTTCGACTACAATT+GGG | 0.491708 | 7.1:+65264195 | MS.gene040247:CDS |
| CGTCAAAAGGAGATGGTGGC+TGG | 0.492100 | 7.1:+65263212 | MS.gene040247:CDS |
| ACATTATGGTTCAGAGAATG+AGG | 0.494022 | 7.1:+65264434 | MS.gene040247:CDS |
| GACCGCATAAGCTGACTGTT+GGG | 0.496307 | 7.1:-65264514 | None:intergenic |
| GAGAACATCTTATGAAGTGA+TGG | 0.499875 | 7.1:+65263118 | MS.gene040247:CDS |
| TGTCTTCTGCAGCATCAACT+TGG | 0.502977 | 7.1:-65263304 | None:intergenic |
| AACCGTCAATTGTCCACTCT+CGG | 0.506734 | 7.1:-65262577 | None:intergenic |
| CTCATTCAAATCGTATGCAT+TGG | 0.507227 | 7.1:+65264281 | MS.gene040247:CDS |
| TTTAAGTCCGAAAATCGAAA+AGG | 0.508080 | 7.1:-65263170 | None:intergenic |
| ATTGGTCTTCAGTTTGGGTG+AGG | 0.509410 | 7.1:+65264299 | MS.gene040247:CDS |
| GATCTTCAAACCTTGGGGAA+AGG | 0.519004 | 7.1:-65264759 | None:intergenic |
| GGTCTTTGCTCATGGCATAT+GGG | 0.519436 | 7.1:+65264085 | MS.gene040247:CDS |
| TAAAGAATCGAACAAGTGAA+TGG | 0.519618 | 7.1:-65264402 | None:intergenic |
| TGTCTATAAGATATATAGGT+GGG | 0.523740 | 7.1:+65262974 | MS.gene040247:CDS |
| CAGCTGGTTTGAAAATGACT+CGG | 0.538169 | 7.1:+65264332 | MS.gene040247:CDS |
| TAACAAAGAAGGTTTCAAGA+AGG | 0.538422 | 7.1:+65262815 | MS.gene040247:CDS |
| AATCGAACAAGTGAATGGTC+TGG | 0.540971 | 7.1:-65264397 | None:intergenic |
| ATGAGGAGGACACAACAAAA+GGG | 0.542065 | 7.1:+65264611 | MS.gene040247:CDS |
| CCTTTAGTGATAAAGAATCA+TGG | 0.543522 | 7.1:+65262640 | MS.gene040247:CDS |
| AACAAAGAAGGTTTCAAGAA+GGG | 0.545537 | 7.1:+65262816 | MS.gene040247:CDS |
| AAATGCTCTGGTTTATGTAA+TGG | 0.552634 | 7.1:-65263014 | None:intergenic |
| ACTTCAACAACGCACCAGCC+TGG | 0.557139 | 7.1:-65264030 | None:intergenic |
| TGAAAATTCAGTTATTGATG+CGG | 0.565546 | 7.1:+65262599 | MS.gene040247:CDS |
| GTGATGGGTCAAGGAGTTGG+AGG | 0.568802 | 7.1:+65263134 | MS.gene040247:CDS |
| GGACCGCATAAGCTGACTGT+TGG | 0.579264 | 7.1:-65264515 | None:intergenic |
| TTGAAGAAAACCTTTCCCCA+AGG | 0.580876 | 7.1:+65264749 | MS.gene040247:CDS |
| AACAACTCGTCAAAAGGAGA+TGG | 0.584084 | 7.1:+65263205 | MS.gene040247:CDS |
| TGGTGTATACTTGTTTACTA+CGG | 0.585960 | 7.1:-65264536 | None:intergenic |
| TCTTATGAAGTGATGGGTCA+AGG | 0.589029 | 7.1:+65263125 | MS.gene040247:CDS |
| ACCATATACACAGACCAGGC+TGG | 0.590176 | 7.1:+65264016 | MS.gene040247:CDS |
| AACTCGTCAAAAGGAGATGG+TGG | 0.601059 | 7.1:+65263208 | MS.gene040247:CDS |
| AGAACATCTTATGAAGTGAT+GGG | 0.601988 | 7.1:+65263119 | MS.gene040247:CDS |
| ATCCCAACAGTCAGCTTATG+CGG | 0.606153 | 7.1:+65264512 | MS.gene040247:CDS |
| CTTCAAATACTATTATGAGG+AGG | 0.607664 | 7.1:+65264597 | MS.gene040247:CDS |
| ATATCAACTTCATCCGAGAG+TGG | 0.612216 | 7.1:+65262564 | MS.gene040247:CDS |
| AGAACTGGACTGTCACATGT+TGG | 0.620791 | 7.1:-65262864 | None:intergenic |
| AGCCACTTAAAGTCCGAAGT+AGG | 0.621799 | 7.1:-65264250 | None:intergenic |
| GGGTCAAGGAGTTGGAGGCA+CGG | 0.621882 | 7.1:+65263139 | MS.gene040247:CDS |
| CATTATGGTTCAGAGAATGA+GGG | 0.643278 | 7.1:+65264435 | MS.gene040247:CDS |
| ATGTCTATAAGATATATAGG+TGG | 0.643489 | 7.1:+65262973 | MS.gene040247:CDS |
| TGAATAAATGAAAAGCAAGA+TGG | 0.655697 | 7.1:-65264556 | None:intergenic |
| TCAAACCATATACACAGACC+AGG | 0.671057 | 7.1:+65264012 | MS.gene040247:CDS |
| ATGTTGATAATGATAATGAG+AGG | 0.683310 | 7.1:+65264695 | MS.gene040247:CDS |
| TGTTGATAATGATAATGAGA+GGG | 0.689129 | 7.1:+65264696 | MS.gene040247:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CAATTCACAAAATAAGAAAT+CGG | + | chr7.1:65262764-65262783 | MS.gene040247:CDS | 20.0% |
| !! | TGAATGTCTATAAGATATAT+AGG | + | chr7.1:65262970-65262989 | MS.gene040247:CDS | 20.0% |
| !! | TTTAATTATGCATATAACAC+TGG | + | chr7.1:65262708-65262727 | MS.gene040247:CDS | 20.0% |
| !!! | AATTTAATGTTCTGGTTTAT+GGG | + | chr7.1:65263591-65263610 | MS.gene040247:intron | 20.0% |
| !!! | ATGATGAAAAACTGTTTTAA+TGG | + | chr7.1:65264223-65264242 | MS.gene040247:CDS | 20.0% |
| !!! | TGAATGTTTATATTGATTGA+AGG | + | chr7.1:65263563-65263582 | MS.gene040247:intron | 20.0% |
| ! | AAAACACCTTGAAAAACATT+CGG | - | chr7.1:65264061-65264080 | None:intergenic | 25.0% |
| ! | ACAAAATAAGAAATCGGATA+AGG | + | chr7.1:65262770-65262789 | MS.gene040247:CDS | 25.0% |
| ! | ACCGAACAAACAATAAATAT+CGG | + | chr7.1:65263408-65263427 | MS.gene040247:CDS | 25.0% |
| ! | AGTACAAAATACTAACCTAA+TGG | - | chr7.1:65263434-65263453 | None:intergenic | 25.0% |
| ! | ATGTCTATAAGATATATAGG+TGG | + | chr7.1:65262973-65262992 | MS.gene040247:CDS | 25.0% |
| ! | CTTTAGTCATTTCAACATTA+TGG | + | chr7.1:65264420-65264439 | MS.gene040247:CDS | 25.0% |
| ! | TAAAGAAAAATCAGAGGAAA+GGG | + | chr7.1:65262905-65262924 | MS.gene040247:CDS | 25.0% |
| ! | TGAAAATTCAGTTATTGATG+CGG | + | chr7.1:65262599-65262618 | MS.gene040247:CDS | 25.0% |
| ! | TGAAATTTGAATGAATGTTC+TGG | + | chr7.1:65263481-65263500 | MS.gene040247:intron | 25.0% |
| ! | TGAATAAATGAAAAGCAAGA+TGG | - | chr7.1:65264559-65264578 | None:intergenic | 25.0% |
| ! | TGGATATCATAGTAAAAACA+TGG | - | chr7.1:65263287-65263306 | None:intergenic | 25.0% |
| ! | TGTCTATAAGATATATAGGT+GGG | + | chr7.1:65262974-65262993 | MS.gene040247:CDS | 25.0% |
| ! | TTCCTTCAAATACTATTATG+AGG | + | chr7.1:65264594-65264613 | MS.gene040247:CDS | 25.0% |
| ! | TTTCGATGAGTTAACTAATT+TGG | + | chr7.1:65264153-65264172 | MS.gene040247:CDS | 25.0% |
| !! | AAGACATAGCTAGTATTTTT+CGG | + | chr7.1:65263321-65263340 | MS.gene040247:CDS | 25.0% |
| !! | AGGTTTAGAATTTAATGTTC+TGG | + | chr7.1:65263583-65263602 | MS.gene040247:intron | 25.0% |
| !! | TGTTGTATTTTGTTCTGATT+TGG | + | chr7.1:65263843-65263862 | MS.gene040247:intron | 25.0% |
| !!! | ATGTTGATAATGATAATGAG+AGG | + | chr7.1:65264695-65264714 | MS.gene040247:CDS | 25.0% |
| !!! | CTTATTTTGTGAATTGTTCT+TGG | - | chr7.1:65262760-65262779 | None:intergenic | 25.0% |
| !!! | GAATTTAATGTTCTGGTTTA+TGG | + | chr7.1:65263590-65263609 | MS.gene040247:intron | 25.0% |
| !!! | GCTTTAATAAATTCTAAAGC+TGG | + | chr7.1:65263086-65263105 | MS.gene040247:CDS | 25.0% |
| !!! | TGAAAAACTGTTTTAATGGA+AGG | + | chr7.1:65264227-65264246 | MS.gene040247:CDS | 25.0% |
| !!! | TGTTGATAATGATAATGAGA+GGG | + | chr7.1:65264696-65264715 | MS.gene040247:CDS | 25.0% |
| AAACACATATGATCTTTCCA+TGG | - | chr7.1:65263654-65263673 | None:intergenic | 30.0% | |
| AACAAAGAAGGTTTCAAGAA+GGG | + | chr7.1:65262816-65262835 | MS.gene040247:CDS | 30.0% | |
| AACAATAAATATCGGCCATT+AGG | + | chr7.1:65263416-65263435 | MS.gene040247:CDS | 30.0% | |
| AATCAGATTTCGACTACAAT+TGG | + | chr7.1:65264194-65264213 | MS.gene040247:CDS | 30.0% | |
| AGAACATCTTATGAAGTGAT+GGG | + | chr7.1:65263119-65263138 | MS.gene040247:CDS | 30.0% | |
| ATCAGATTTCGACTACAATT+GGG | + | chr7.1:65264195-65264214 | MS.gene040247:CDS | 30.0% | |
| ATGATTGTCAAAACCAAGAA+AGG | - | chr7.1:65263888-65263907 | None:intergenic | 30.0% | |
| ATTATGATCTTCAAACCTTG+GGG | - | chr7.1:65264767-65264786 | None:intergenic | 30.0% | |
| CAACAAGATTATGCTCTATT+TGG | + | chr7.1:65263359-65263378 | MS.gene040247:CDS | 30.0% | |
| CCATGATTCTTTATCACTAA+AGG | - | chr7.1:65262643-65262662 | None:intergenic | 30.0% | |
| CCTTTAGTGATAAAGAATCA+TGG | + | chr7.1:65262640-65262659 | MS.gene040247:CDS | 30.0% | |
| CTAAAGAAAAATCAGAGGAA+AGG | + | chr7.1:65262904-65262923 | MS.gene040247:CDS | 30.0% | |
| CTCCTCATAATAGTATTTGA+AGG | - | chr7.1:65264599-65264618 | None:intergenic | 30.0% | |
| CTGGTATATGTGTGTTAATT+TGG | + | chr7.1:65263520-65263539 | MS.gene040247:intron | 30.0% | |
| CTTCAAATACTATTATGAGG+AGG | + | chr7.1:65264597-65264616 | MS.gene040247:CDS | 30.0% | |
| GAAAGCTAAAGAAAAATCAG+AGG | + | chr7.1:65262899-65262918 | MS.gene040247:CDS | 30.0% | |
| GAGAATGCAAAGAAAAATCT+CGG | + | chr7.1:65264109-65264128 | MS.gene040247:CDS | 30.0% | |
| GATTATGATCTTCAAACCTT+GGG | - | chr7.1:65264768-65264787 | None:intergenic | 30.0% | |
| GCCGATATTTATTGTTTGTT+CGG | - | chr7.1:65263412-65263431 | None:intergenic | 30.0% | |
| GTCTGCTTAATCCTAAAAAT+AGG | + | chr7.1:65262841-65262860 | MS.gene040247:CDS | 30.0% | |
| TAAAGAATCATGGAAGTCTT+TGG | + | chr7.1:65262650-65262669 | MS.gene040247:CDS | 30.0% | |
| TAAAGAATCGAACAAGTGAA+TGG | - | chr7.1:65264405-65264424 | None:intergenic | 30.0% | |
| TAACAAAGAAGGTTTCAAGA+AGG | + | chr7.1:65262815-65262834 | MS.gene040247:CDS | 30.0% | |
| TCTAATAACAACTCGTCAAA+AGG | + | chr7.1:65263199-65263218 | MS.gene040247:CDS | 30.0% | |
| TGGTGTATACTTGTTTACTA+CGG | - | chr7.1:65264539-65264558 | None:intergenic | 30.0% | |
| TTCTCATACTTAACAAGAAC+TGG | - | chr7.1:65262882-65262901 | None:intergenic | 30.0% | |
| TTTAAGTCCGAAAATCGAAA+AGG | - | chr7.1:65263173-65263192 | None:intergenic | 30.0% | |
| TTTCTATTTACACAGCACAA+TGG | + | chr7.1:65263802-65263821 | MS.gene040247:intron | 30.0% | |
| ! | AAATGCTCTGGTTTATGTAA+TGG | - | chr7.1:65263017-65263036 | None:intergenic | 30.0% |
| ! | AGACATAGCTAGTATTTTTC+GGG | + | chr7.1:65263322-65263341 | MS.gene040247:CDS | 30.0% |
| ! | AGCTGGAATATATTTGAAGT+TGG | + | chr7.1:65262938-65262957 | MS.gene040247:CDS | 30.0% |
| ! | CAAAGTTTTCACAATTGAGA+AGG | + | chr7.1:65264654-65264673 | MS.gene040247:CDS | 30.0% |
| ! | GAATCTTCCTTTTCGATTTT+CGG | + | chr7.1:65263163-65263182 | MS.gene040247:CDS | 30.0% |
| ! | TATGGTTTGAGGTTTCTTAT+TGG | - | chr7.1:65264002-65264021 | None:intergenic | 30.0% |
| ! | TCAATTCCGAATGTTTTTCA+AGG | + | chr7.1:65264052-65264071 | MS.gene040247:CDS | 30.0% |
| !! | ACATGTTTTCAAGATTTTGG+AGG | + | chr7.1:65264879-65264898 | MS.gene040247:intron | 30.0% |
| !! | ATCATAATCGACTTGATGAA+AGG | + | chr7.1:65264779-65264798 | MS.gene040247:intron | 30.0% |
| !! | ATGTTCTGGTTTAGAATTGA+AGG | + | chr7.1:65263495-65263514 | MS.gene040247:intron | 30.0% |
| !! | TCATAATCGACTTGATGAAA+GGG | + | chr7.1:65264780-65264799 | MS.gene040247:intron | 30.0% |
| !! | TCGACATGTTTTCAAGATTT+TGG | + | chr7.1:65264876-65264895 | MS.gene040247:intron | 30.0% |
| !!! | GTTTTTCAAGGTGTTTTTCA+TGG | + | chr7.1:65264064-65264083 | MS.gene040247:CDS | 30.0% |
| ACATTATGGTTCAGAGAATG+AGG | + | chr7.1:65264434-65264453 | MS.gene040247:CDS | 35.0% | |
| ATAACACTGGATTCTCTGTT+AGG | + | chr7.1:65262721-65262740 | MS.gene040247:CDS | 35.0% | |
| CATTATGGTTCAGAGAATGA+GGG | + | chr7.1:65264435-65264454 | MS.gene040247:CDS | 35.0% | |
| CGAGAAGTAAATGAAGTTCA+AGG | + | chr7.1:65263056-65263075 | MS.gene040247:CDS | 35.0% | |
| CGATTATGATCTTCAAACCT+TGG | - | chr7.1:65264769-65264788 | None:intergenic | 35.0% | |
| CGTTATGCTTGTAACAAAGA+AGG | + | chr7.1:65262804-65262823 | MS.gene040247:CDS | 35.0% | |
| CTCATTCAAATCGTATGCAT+TGG | + | chr7.1:65264281-65264300 | MS.gene040247:CDS | 35.0% | |
| GAGAACATCTTATGAAGTGA+TGG | + | chr7.1:65263118-65263137 | MS.gene040247:CDS | 35.0% | |
| TGTACAGAGCACAAATTCTA+AGG | - | chr7.1:65263630-65263649 | None:intergenic | 35.0% | |
| ! | CATCGTAAGAGTGTGTTATT+TGG | + | chr7.1:65263905-65263924 | MS.gene040247:CDS | 35.0% |
| ! | GGTTTCGAATGTTGATGTTT+TGG | + | chr7.1:65264717-65264736 | MS.gene040247:CDS | 35.0% |
| ! | TCTTTCAATGCTTTTCTTCG+TGG | + | chr7.1:65264364-65264383 | MS.gene040247:CDS | 35.0% |
| ! | TGGTTTAGAATTGAAGGTTC+TGG | + | chr7.1:65263501-65263520 | MS.gene040247:intron | 35.0% |
| ! | TTTTAATGGAAGGCCTACTT+CGG | + | chr7.1:65264237-65264256 | MS.gene040247:CDS | 35.0% |
| ! | TTTTTCATGGTCTTTGCTCA+TGG | + | chr7.1:65264077-65264096 | MS.gene040247:CDS | 35.0% |
| !! | CACAAATTCTAAGGCAAGAT+AGG | - | chr7.1:65263621-65263640 | None:intergenic | 35.0% |
| !! | TATGCATTGGTCTTCAGTTT+GGG | + | chr7.1:65264294-65264313 | MS.gene040247:CDS | 35.0% |
| !! | TCACATGTTGGCCTATTTTT+AGG | - | chr7.1:65262855-65262874 | None:intergenic | 35.0% |
| !!! | AGACATCAGCTACTTTTGAT+TGG | + | chr7.1:65263948-65263967 | MS.gene040247:CDS | 35.0% |
| AACAACTCGTCAAAAGGAGA+TGG | + | chr7.1:65263205-65263224 | MS.gene040247:CDS | 40.0% | |
| AATCGAACAAGTGAATGGTC+TGG | - | chr7.1:65264400-65264419 | None:intergenic | 40.0% | |
| ACCTATGATCTTTGCATAGC+TGG | - | chr7.1:65263752-65263771 | None:intergenic | 40.0% | |
| ATATCAACTTCATCCGAGAG+TGG | + | chr7.1:65262564-65262583 | MS.gene040247:CDS | 40.0% | |
| ATGAGGAGGACACAACAAAA+GGG | + | chr7.1:65264611-65264630 | MS.gene040247:CDS | 40.0% | |
| ATGTCGTATGTTTGAGAACC+GGG | + | chr7.1:65264843-65264862 | MS.gene040247:intron | 40.0% | |
| CATGTCGTATGTTTGAGAAC+CGG | + | chr7.1:65264842-65264861 | MS.gene040247:intron | 40.0% | |
| GAAAAATCAGAGGAAAGGGT+TGG | + | chr7.1:65262909-65262928 | MS.gene040247:CDS | 40.0% | |
| TACATTTCAGCTGCCTTTCT+TGG | + | chr7.1:65263872-65263891 | MS.gene040247:intron | 40.0% | |
| TATGAGGAGGACACAACAAA+AGG | + | chr7.1:65264610-65264629 | MS.gene040247:CDS | 40.0% | |
| TCAAACCATATACACAGACC+AGG | + | chr7.1:65264012-65264031 | MS.gene040247:CDS | 40.0% | |
| TCCAGCTATGCAAAGATCAT+AGG | + | chr7.1:65263748-65263767 | MS.gene040247:intron | 40.0% | |
| TGGTCTGTGTATATGGTTTG+AGG | - | chr7.1:65264013-65264032 | None:intergenic | 40.0% | |
| TTGAAGAAAACCTTTCCCCA+AGG | + | chr7.1:65264749-65264768 | MS.gene040247:CDS | 40.0% | |
| ! | GAGGGATAATCATGCTGATT+TGG | + | chr7.1:65264453-65264472 | MS.gene040247:CDS | 40.0% |
| !! | CAGCTGGTTTGAAAATGACT+CGG | + | chr7.1:65264332-65264351 | MS.gene040247:CDS | 40.0% |
| !! | GTATGCATTGGTCTTCAGTT+TGG | + | chr7.1:65264293-65264312 | MS.gene040247:CDS | 40.0% |
| !! | TCATGCTGATTTGGACTTCA+AGG | + | chr7.1:65264462-65264481 | MS.gene040247:CDS | 40.0% |
| !! | TCTTATGAAGTGATGGGTCA+AGG | + | chr7.1:65263125-65263144 | MS.gene040247:CDS | 40.0% |
| AACCGTCAATTGTCCACTCT+CGG | - | chr7.1:65262580-65262599 | None:intergenic | 45.0% | |
| AACTCGTCAAAAGGAGATGG+TGG | + | chr7.1:65263208-65263227 | MS.gene040247:CDS | 45.0% | |
| AGAACTGGACTGTCACATGT+TGG | - | chr7.1:65262867-65262886 | None:intergenic | 45.0% | |
| AGCCACTTAAAGTCCGAAGT+AGG | - | chr7.1:65264253-65264272 | None:intergenic | 45.0% | |
| ATCCCAACAGTCAGCTTATG+CGG | + | chr7.1:65264512-65264531 | MS.gene040247:CDS | 45.0% | |
| ATCCGAGAGTGGACAATTGA+CGG | + | chr7.1:65262575-65262594 | MS.gene040247:CDS | 45.0% | |
| ATTTGTGCTCTGTACAGCCA+TGG | + | chr7.1:65263634-65263653 | MS.gene040247:intron | 45.0% | |
| CATGTCGACATAAGAAACCC+CGG | - | chr7.1:65264864-65264883 | None:intergenic | 45.0% | |
| GATCTTCAAACCTTGGGGAA+AGG | - | chr7.1:65264762-65264781 | None:intergenic | 45.0% | |
| GGTCTTTGCTCATGGCATAT+GGG | + | chr7.1:65264085-65264104 | MS.gene040247:CDS | 45.0% | |
| TGGTCTTTGCTCATGGCATA+TGG | + | chr7.1:65264084-65264103 | MS.gene040247:CDS | 45.0% | |
| TGTCGTATGTTTGAGAACCG+GGG | + | chr7.1:65264844-65264863 | MS.gene040247:intron | 45.0% | |
| TGTCTTCTGCAGCATCAACT+TGG | - | chr7.1:65263307-65263326 | None:intergenic | 45.0% | |
| ! | GTGAGGTCACATTTTACAGC+TGG | + | chr7.1:65264316-65264335 | MS.gene040247:CDS | 45.0% |
| !! | ATTGGTCTTCAGTTTGGGTG+AGG | + | chr7.1:65264299-65264318 | MS.gene040247:CDS | 45.0% |
| !! | GAAAGGGTTGGTTGTAAAGC+TGG | + | chr7.1:65262921-65262940 | MS.gene040247:CDS | 45.0% |
| !!! | GCTAGTATTTTTCGGGCAGA+TGG | + | chr7.1:65263329-65263348 | MS.gene040247:CDS | 45.0% |
| ACCAGCCTGGTCTGTGTATA+TGG | - | chr7.1:65264020-65264039 | None:intergenic | 50.0% | |
| ACCATATACACAGACCAGGC+TGG | + | chr7.1:65264016-65264035 | MS.gene040247:CDS | 50.0% | |
| CTCAAGTAGCGCAAATGCTC+TGG | - | chr7.1:65263029-65263048 | None:intergenic | 50.0% | |
| GACCGCATAAGCTGACTGTT+GGG | - | chr7.1:65264517-65264536 | None:intergenic | 50.0% | |
| GGCCTACTTCGGACTTTAAG+TGG | + | chr7.1:65264248-65264267 | MS.gene040247:CDS | 50.0% | |
| GGGTTGTCACAGTCGACATT+AGG | + | chr7.1:65264800-65264819 | MS.gene040247:intron | 50.0% | |
| !! | GAAGTGATGGGTCAAGGAGT+TGG | + | chr7.1:65263131-65263150 | MS.gene040247:CDS | 50.0% |
| ACTTCAACAACGCACCAGCC+TGG | - | chr7.1:65264033-65264052 | None:intergenic | 55.0% | |
| GGACCGCATAAGCTGACTGT+TGG | - | chr7.1:65264518-65264537 | None:intergenic | 55.0% | |
| ! | CGTCAAAAGGAGATGGTGGC+TGG | + | chr7.1:65263212-65263231 | MS.gene040247:CDS | 55.0% |
| !! | GTGATGGGTCAAGGAGTTGG+AGG | + | chr7.1:65263134-65263153 | MS.gene040247:CDS | 55.0% |
| GGGTCAAGGAGTTGGAGGCA+CGG | + | chr7.1:65263139-65263158 | MS.gene040247:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.1 | gene | 65262555 | 65264907 | 65262555 | ID=MS.gene040247 |
| chr7.1 | mRNA | 65262555 | 65264907 | 65262555 | ID=MS.gene040247.t1;Parent=MS.gene040247 |
| chr7.1 | exon | 65262555 | 65263437 | 65262555 | ID=MS.gene040247.t1.exon1;Parent=MS.gene040247.t1 |
| chr7.1 | CDS | 65262555 | 65263437 | 65262555 | ID=cds.MS.gene040247.t1;Parent=MS.gene040247.t1 |
| chr7.1 | exon | 65263882 | 65264770 | 65263882 | ID=MS.gene040247.t1.exon2;Parent=MS.gene040247.t1 |
| chr7.1 | CDS | 65263882 | 65264770 | 65263882 | ID=cds.MS.gene040247.t1;Parent=MS.gene040247.t1 |
| chr7.1 | exon | 65264892 | 65264907 | 65264892 | ID=MS.gene040247.t1.exon3;Parent=MS.gene040247.t1 |
| chr7.1 | CDS | 65264892 | 65264907 | 65264892 | ID=cds.MS.gene040247.t1;Parent=MS.gene040247.t1 |
| Gene Sequence |
| Protein sequence |
