Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene040259.t1 | XP_003622266.1 | 88.9 | 198 | 15 | 2 | 44 | 235 | 156 | 352 | 3.50E-90 | 341.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene040259.t1 | Q9LU68 | 42.4 | 118 | 33 | 3 | 111 | 228 | 337 | 419 | 5.5e-12 | 73.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene040259.t1 | G7L5C3 | 88.9 | 198 | 15 | 2 | 44 | 235 | 156 | 352 | 2.5e-90 | 341.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene040259.t1 | TR | Others |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene040259.t1 | MTR_7g032240 | 86.307 | 241 | 22 | 3 | 1 | 235 | 117 | 352 | 8.28e-140 | 398 |
| MS.gene040259.t1 | MTR_5g072780 | 38.843 | 121 | 41 | 4 | 108 | 228 | 123 | 210 | 2.21e-16 | 76.6 |
| MS.gene040259.t1 | MTR_4g127420 | 38.261 | 115 | 42 | 3 | 114 | 228 | 293 | 378 | 3.47e-15 | 75.5 |
| MS.gene040259.t1 | MTR_8g104190 | 34.091 | 176 | 61 | 8 | 76 | 243 | 276 | 404 | 5.01e-15 | 75.1 |
| MS.gene040259.t1 | MTR_1g110870 | 38.281 | 128 | 56 | 4 | 109 | 233 | 316 | 423 | 7.30e-15 | 74.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene040259.t1 | AT5G14370 | 50.538 | 186 | 63 | 9 | 56 | 236 | 177 | 338 | 1.25e-37 | 136 |
| MS.gene040259.t1 | AT5G57180 | 41.525 | 118 | 34 | 3 | 111 | 228 | 337 | 419 | 1.27e-18 | 85.9 |
| MS.gene040259.t1 | AT5G57180 | 41.525 | 118 | 34 | 3 | 111 | 228 | 337 | 419 | 1.59e-18 | 85.5 |
| MS.gene040259.t1 | AT4G25990 | 37.692 | 130 | 46 | 3 | 111 | 239 | 293 | 388 | 7.18e-17 | 80.5 |
| MS.gene040259.t1 | AT1G73870 | 40.310 | 129 | 46 | 5 | 108 | 228 | 276 | 381 | 8.27e-17 | 80.1 |
| MS.gene040259.t1 | AT4G25990 | 40.336 | 119 | 36 | 3 | 111 | 228 | 293 | 377 | 1.38e-16 | 79.7 |
| MS.gene040259.t1 | AT4G25990 | 37.500 | 136 | 43 | 4 | 111 | 238 | 293 | 394 | 2.36e-16 | 79.0 |
| MS.gene040259.t1 | AT1G25440 | 38.583 | 127 | 59 | 4 | 109 | 233 | 293 | 402 | 4.70e-15 | 75.1 |
| MS.gene040259.t1 | AT1G07050 | 38.843 | 121 | 36 | 4 | 109 | 228 | 104 | 187 | 5.31e-14 | 69.7 |
| MS.gene040259.t1 | AT1G07050 | 38.843 | 121 | 36 | 4 | 109 | 228 | 104 | 187 | 5.89e-14 | 69.7 |
| MS.gene040259.t1 | AT1G68520 | 34.351 | 131 | 61 | 4 | 108 | 233 | 288 | 398 | 1.86e-12 | 67.4 |
Find 77 sgRNAs with CRISPR-Local
Find 195 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTGAGTGTTCTTGCCTTCT+TGG | 0.125557 | 7.1:-65484886 | None:intergenic |
| TGGTATTTGTACAGGTAATA+TGG | 0.161633 | 7.1:+65484139 | MS.gene040259:intron |
| CTTCTTGGTGTTTGCTTGTT+TGG | 0.198875 | 7.1:-65484871 | None:intergenic |
| CTCTGCCACCCTTCTTTGTT+AGG | 0.206880 | 7.1:-65484997 | None:intergenic |
| GTAGAGTTTCTCGGAGTTAC+AGG | 0.248195 | 7.1:-65484945 | None:intergenic |
| GGTTATGGGTGTGATGTTAA+TGG | 0.287554 | 7.1:+65484165 | MS.gene040259:CDS |
| TTGTTAGCTCCAACAACTTC+AGG | 0.323703 | 7.1:-65484204 | None:intergenic |
| TTGAATGCTTGGTCTGATAA+AGG | 0.338505 | 7.1:+65482670 | MS.gene040259:CDS |
| CAGGTAATATGGGATGGTTA+TGG | 0.362688 | 7.1:+65484150 | MS.gene040259:intron |
| AGGTAATATGGGATGGTTAT+GGG | 0.363177 | 7.1:+65484151 | MS.gene040259:intron |
| CAGACAAGGACTGACTAATC+TGG | 0.364953 | 7.1:+65485183 | MS.gene040259:intron |
| TGAAGAGAGTGAAGAGAGAT+GGG | 0.373318 | 7.1:+65482519 | MS.gene040259:CDS |
| AAAGGTTCTCTTTATGTTGA+TGG | 0.373469 | 7.1:+65482688 | MS.gene040259:CDS |
| ACCTATGGTTGACTGGTTGC+TGG | 0.376351 | 7.1:-65485021 | None:intergenic |
| CAGACTGTTCCTGATTTGTT+CGG | 0.385801 | 7.1:+65482727 | MS.gene040259:CDS |
| GGTATTTGTACAGGTAATAT+GGG | 0.387282 | 7.1:+65484140 | MS.gene040259:intron |
| TTTCAGATAGTAGAGTTTCT+CGG | 0.397905 | 7.1:-65484954 | None:intergenic |
| CACCCTTCTTTGTTAGGGTG+TGG | 0.406793 | 7.1:-65484991 | None:intergenic |
| TGTGAAGGTGAAGGAAGAAA+TGG | 0.408295 | 7.1:+65484233 | MS.gene040259:CDS |
| TCTGCCACCCTTCTTTGTTA+GGG | 0.413375 | 7.1:-65484996 | None:intergenic |
| ATGAAGAGAGTGAAGAGAGA+TGG | 0.416748 | 7.1:+65482518 | MS.gene040259:CDS |
| GAAGAAATGGGTTGGAAGCT+TGG | 0.419659 | 7.1:+65484246 | MS.gene040259:CDS |
| AAGAAATGGGTTGGAAGCTT+GGG | 0.434227 | 7.1:+65484247 | MS.gene040259:CDS |
| ATTGAACCACCGAACAAATC+AGG | 0.449972 | 7.1:-65482736 | None:intergenic |
| GGAAAGCAATGAGGAGGAAG+AGG | 0.454954 | 7.1:+65482488 | MS.gene040259:CDS |
| GTTATGGGTGTGATGTTAAT+GGG | 0.457104 | 7.1:+65484166 | MS.gene040259:CDS |
| GACGGTGGAGCAACGCTAAA+CGG | 0.458187 | 7.1:+65482355 | MS.gene040259:CDS |
| GAAGTTAATAGTACTTGTGT+TGG | 0.464035 | 7.1:+65482589 | MS.gene040259:CDS |
| AGGTGTCCGGTGATGGATCA+AGG | 0.465230 | 7.1:+65482457 | MS.gene040259:CDS |
| TGGAAAGTTCCTGAAGTTGT+TGG | 0.467176 | 7.1:+65484195 | MS.gene040259:CDS |
| GTTACAGGTCTGAGGATTTG+TGG | 0.495251 | 7.1:-65484930 | None:intergenic |
| AGAGACGAAGAAGGAAATGA+TGG | 0.504022 | 7.1:+65482564 | MS.gene040259:CDS |
| ATTAGTAAAATTACATTGGG+AGG | 0.505856 | 7.1:-65482760 | None:intergenic |
| AGTGATGAGGTGTCCGGTGA+TGG | 0.506901 | 7.1:+65482450 | MS.gene040259:CDS |
| CCGATCTACCTATGGTTGAC+TGG | 0.507193 | 7.1:-65485028 | None:intergenic |
| AGTTGTTGAAGAGACGAAGA+AGG | 0.513266 | 7.1:+65482555 | MS.gene040259:CDS |
| TTAGTAAAATTACATTGGGA+GGG | 0.521925 | 7.1:-65482759 | None:intergenic |
| CAAACAAGCAAACACCAAGA+AGG | 0.527605 | 7.1:+65484872 | MS.gene040259:CDS |
| GACGACGACGGAGGAAGAAG+AGG | 0.527666 | 7.1:+65482417 | MS.gene040259:CDS |
| ATGCCACACCCTAACAAAGA+AGG | 0.529015 | 7.1:+65484988 | MS.gene040259:CDS |
| ATGATGGGATATTGAATGCT+TGG | 0.532795 | 7.1:+65482659 | MS.gene040259:CDS |
| TGTTGAGATACAAAGAGAAG+AGG | 0.545019 | 7.1:+65484286 | MS.gene040259:CDS |
| TCAACTTGCGAACTTCATAA+CGG | 0.545911 | 7.1:-65484335 | None:intergenic |
| TTATGTTGATGGTTGTGATG+AGG | 0.548680 | 7.1:+65482699 | MS.gene040259:CDS |
| TCCGGTGATGGATCAAGGGT+TGG | 0.551320 | 7.1:+65482462 | MS.gene040259:CDS |
| ACTGTTCCTGATTTGTTCGG+TGG | 0.551576 | 7.1:+65482730 | MS.gene040259:CDS |
| AGACAAGGACTGACTAATCT+GGG | 0.558164 | 7.1:+65485184 | MS.gene040259:intron |
| GTTTGAAGCTTGATCATGAT+GGG | 0.563359 | 7.1:+65482644 | MS.gene040259:CDS |
| GCCAGCAACCAGTCAACCAT+AGG | 0.564571 | 7.1:+65485020 | MS.gene040259:CDS |
| TTCTCGGAGTTACAGGTCTG+AGG | 0.564734 | 7.1:-65484938 | None:intergenic |
| AGTTTGAAGCTTGATCATGA+TGG | 0.572212 | 7.1:+65482643 | MS.gene040259:CDS |
| TTTGTACAGGTAATATGGGA+TGG | 0.575240 | 7.1:+65484144 | MS.gene040259:intron |
| GACGAAGAAGGAAATGATGG+AGG | 0.575278 | 7.1:+65482567 | MS.gene040259:CDS |
| GTGAAGGTGAAGGAAGAAAT+GGG | 0.575413 | 7.1:+65484234 | MS.gene040259:CDS |
| CTAACAAAGAAGGGTGGCAG+AGG | 0.579542 | 7.1:+65484998 | MS.gene040259:CDS |
| ACCAACCCTTGATCCATCAC+CGG | 0.584061 | 7.1:-65482463 | None:intergenic |
| TGGTGAGGAAAGCAATGAGG+AGG | 0.586113 | 7.1:+65482482 | MS.gene040259:CDS |
| AGGTGAAGGAAGAAATGGGT+TGG | 0.586587 | 7.1:+65484238 | MS.gene040259:CDS |
| CAATAACAATGTGAAGGTGA+AGG | 0.593718 | 7.1:+65484224 | MS.gene040259:CDS |
| AGAAATAGTACCTTCATCCT+CGG | 0.597938 | 7.1:-65484372 | None:intergenic |
| GTTTAGCGTTGCTCCACCGT+CGG | 0.602611 | 7.1:-65482353 | None:intergenic |
| ATTGTCAGTGATGAGGTGTC+CGG | 0.606087 | 7.1:+65482444 | MS.gene040259:CDS |
| TGCCACACCCTAACAAAGAA+GGG | 0.609411 | 7.1:+65484989 | MS.gene040259:CDS |
| TGATGGATCAAGGGTTGGTG+AGG | 0.611319 | 7.1:+65482467 | MS.gene040259:CDS |
| TTGGAAGCTTGGGCAGAGAG+AGG | 0.619401 | 7.1:+65484257 | MS.gene040259:CDS |
| AACAAATCAGGAACAGTCTG+AGG | 0.628449 | 7.1:-65482724 | None:intergenic |
| AGCTAACAATAACAATGTGA+AGG | 0.629964 | 7.1:+65484218 | MS.gene040259:CDS |
| AGGAGTCATTGTCAGTGATG+AGG | 0.647629 | 7.1:+65482437 | MS.gene040259:CDS |
| GCGTTGCTCTTCACATCCGA+CGG | 0.662655 | 7.1:+65482337 | MS.gene040259:CDS |
| TTGCTCTTCACATCCGACGG+TGG | 0.672001 | 7.1:+65482340 | MS.gene040259:CDS |
| GTGATGTTAATGGGAACACA+TGG | 0.674682 | 7.1:+65484175 | MS.gene040259:CDS |
| GGTTGGTGAGGAAAGCAATG+AGG | 0.677201 | 7.1:+65482479 | MS.gene040259:CDS |
| GGTGTCCGGTGATGGATCAA+GGG | 0.677873 | 7.1:+65482458 | MS.gene040259:CDS |
| AGCGGTGATGACGACGACGG+AGG | 0.681137 | 7.1:+65482408 | MS.gene040259:CDS |
| CACACCCTAACAAAGAAGGG+TGG | 0.723841 | 7.1:+65484992 | MS.gene040259:CDS |
| AACAGCGGTGATGACGACGA+CGG | 0.737423 | 7.1:+65482405 | MS.gene040259:CDS |
| TGAATCGACTACGTTAACAG+CGG | 0.787904 | 7.1:+65482390 | MS.gene040259:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAATTAGTAAAATTACAT+TGG | - | chr7.1:65482767-65482786 | None:intergenic | 10.0% |
| !! | AAAATTAGTAAAATTACATT+GGG | - | chr7.1:65482766-65482785 | None:intergenic | 10.0% |
| !! | ATCAATTTAGAAATATATTA+TGG | + | chr7.1:65484073-65484092 | MS.gene040259:intron | 10.0% |
| !!! | AAGAATTTATTTTGATTTAA+AGG | + | chr7.1:65483501-65483520 | MS.gene040259:intron | 10.0% |
| !! | AAAAAATTACTTGAAAAGAA+AGG | + | chr7.1:65484478-65484497 | MS.gene040259:intron | 15.0% |
| !! | ATGAGAGATAATAAATTTAA+TGG | - | chr7.1:65483452-65483471 | None:intergenic | 15.0% |
| !!! | TTAAGTTGATTTTATAAGAT+TGG | + | chr7.1:65483958-65483977 | MS.gene040259:intron | 15.0% |
| !!! | TTTTTGTTTATAAATGTGAA+CGG | + | chr7.1:65483790-65483809 | MS.gene040259:intron | 15.0% |
| !! | AAAATCAACTTAAACCATTA+TGG | - | chr7.1:65483951-65483970 | None:intergenic | 20.0% |
| !! | ACTTGATGCAAATTATAATT+TGG | - | chr7.1:65483030-65483049 | None:intergenic | 20.0% |
| !!! | ATATCTAGTACAATTTTGTT+TGG | + | chr7.1:65485148-65485167 | MS.gene040259:intron | 20.0% |
| !!! | ATCTTACATTTAAAACATGA+TGG | + | chr7.1:65483580-65483599 | MS.gene040259:intron | 20.0% |
| !!! | ATTGTTAGAGAAAATCTTTT+AGG | + | chr7.1:65484041-65484060 | MS.gene040259:intron | 20.0% |
| !!! | ATTTTTTCCAATTAATTGAG+TGG | + | chr7.1:65482975-65482994 | MS.gene040259:intron | 20.0% |
| !!! | GATTTTATAAGATTGGTTTA+TGG | + | chr7.1:65483965-65483984 | MS.gene040259:intron | 20.0% |
| !!! | TCAATGATTTGTTTTTAATC+TGG | - | chr7.1:65483140-65483159 | None:intergenic | 20.0% |
| !!! | TTTCATTATTGGTTACTTTT+TGG | + | chr7.1:65483348-65483367 | MS.gene040259:intron | 20.0% |
| !!! | TTTTTTTTTGTACATGTGAT+CGG | - | chr7.1:65483678-65483697 | None:intergenic | 20.0% |
| ! | AAATATATCACAACCAAACA+GGG | - | chr7.1:65483652-65483671 | None:intergenic | 25.0% |
| ! | AAATGTAAGATCCTAATCAA+GGG | - | chr7.1:65483571-65483590 | None:intergenic | 25.0% |
| ! | AACCAATAATGAAAAGTTGT+CGG | - | chr7.1:65483342-65483361 | None:intergenic | 25.0% |
| ! | ATTAGTAAAATTACATTGGG+AGG | - | chr7.1:65482763-65482782 | None:intergenic | 25.0% |
| ! | TAAATGTAAGATCCTAATCA+AGG | - | chr7.1:65483572-65483591 | None:intergenic | 25.0% |
| ! | TTAGTAAAATTACATTGGGA+GGG | - | chr7.1:65482762-65482781 | None:intergenic | 25.0% |
| ! | TTCAATTTATTGCATCAACT+TGG | - | chr7.1:65484022-65484041 | None:intergenic | 25.0% |
| ! | TTCTCGTTTATATTGTACAA+GGG | - | chr7.1:65484637-65484656 | None:intergenic | 25.0% |
| ! | TTTCTCGTTTATATTGTACA+AGG | - | chr7.1:65484638-65484657 | None:intergenic | 25.0% |
| !! | ATTTCTTTTGTGCATGTTTT+TGG | + | chr7.1:65483286-65483305 | MS.gene040259:intron | 25.0% |
| !! | CAACTTTTGAACAATTTTCT+TGG | + | chr7.1:65484683-65484702 | MS.gene040259:intron | 25.0% |
| !! | GAATAGTGATGATTTCATTT+TGG | + | chr7.1:65483314-65483333 | MS.gene040259:intron | 25.0% |
| !! | TGCTTATATTTGAAACTCAA+GGG | - | chr7.1:65484562-65484581 | None:intergenic | 25.0% |
| !! | TTCATTTGATAGTAACAAGT+GGG | - | chr7.1:65484100-65484119 | None:intergenic | 25.0% |
| !! | TTGCTTATATTTGAAACTCA+AGG | - | chr7.1:65484563-65484582 | None:intergenic | 25.0% |
| !! | TTTCATACATATTTGATTCG+CGG | + | chr7.1:65482807-65482826 | MS.gene040259:intron | 25.0% |
| !! | TTTTTAATCAGTTATGAGTG+TGG | + | chr7.1:65483189-65483208 | MS.gene040259:intron | 25.0% |
| !!! | TACAATTTTGTTTGGAAACT+CGG | + | chr7.1:65485156-65485175 | MS.gene040259:intron | 25.0% |
| !!! | TGTGTGTTATTTTGTTTGAA+TGG | + | chr7.1:65484524-65484543 | MS.gene040259:intron | 25.0% |
| AAAACAGGAGAAAAATACAC+TGG | - | chr7.1:65483409-65483428 | None:intergenic | 30.0% | |
| AAAGGTTCTCTTTATGTTGA+TGG | + | chr7.1:65482688-65482707 | MS.gene040259:CDS | 30.0% | |
| AAGCTATTTGGTATTTGTAC+AGG | + | chr7.1:65484131-65484150 | MS.gene040259:intron | 30.0% | |
| AATACACCCAAATAAAACGA+AGG | + | chr7.1:65484843-65484862 | MS.gene040259:intron | 30.0% | |
| AATGTAAGATCCTAATCAAG+GGG | - | chr7.1:65483570-65483589 | None:intergenic | 30.0% | |
| ACTTTCTTCTCTCTTCTTAT+TGG | - | chr7.1:65484772-65484791 | None:intergenic | 30.0% | |
| AGCTAACAATAACAATGTGA+AGG | + | chr7.1:65484218-65484237 | MS.gene040259:CDS | 30.0% | |
| GAAATATATCACAACCAAAC+AGG | - | chr7.1:65483653-65483672 | None:intergenic | 30.0% | |
| GAAGTTAATAGTACTTGTGT+TGG | + | chr7.1:65482589-65482608 | MS.gene040259:CDS | 30.0% | |
| GGTATTTGTACAGGTAATAT+GGG | + | chr7.1:65484140-65484159 | MS.gene040259:intron | 30.0% | |
| TGGTATTTGTACAGGTAATA+TGG | + | chr7.1:65484139-65484158 | MS.gene040259:intron | 30.0% | |
| TGGTGTGACAAAGATTATTA+TGG | + | chr7.1:65483985-65484004 | MS.gene040259:intron | 30.0% | |
| TTTCAGATAGTAGAGTTTCT+CGG | - | chr7.1:65484957-65484976 | None:intergenic | 30.0% | |
| ! | CTTCATTTGATAGTAACAAG+TGG | - | chr7.1:65484101-65484120 | None:intergenic | 30.0% |
| ! | GTTAGAGAAAATCTTTTAGG+TGG | + | chr7.1:65484044-65484063 | MS.gene040259:intron | 30.0% |
| !! | TTCTTTTACCCTTGTTTCAA+TGG | + | chr7.1:65483626-65483645 | MS.gene040259:intron | 30.0% |
| !!! | AGTGTTTTGATGAAGCTATT+TGG | + | chr7.1:65484119-65484138 | MS.gene040259:intron | 30.0% |
| !!! | ATTGGTTACTTTTTGGTAAG+AGG | + | chr7.1:65483355-65483374 | MS.gene040259:intron | 30.0% |
| ACCAGATATGTCTAAATGCA+TGG | - | chr7.1:65484408-65484427 | None:intergenic | 35.0% | |
| ACCATGCATTTAGACATATC+TGG | + | chr7.1:65484404-65484423 | MS.gene040259:intron | 35.0% | |
| ACTAGATATAACCTCTATCC+TGG | - | chr7.1:65485137-65485156 | None:intergenic | 35.0% | |
| AGAAATAGTACCTTCATCCT+CGG | - | chr7.1:65484375-65484394 | None:intergenic | 35.0% | |
| AGGTAATATGGGATGGTTAT+GGG | + | chr7.1:65484151-65484170 | MS.gene040259:intron | 35.0% | |
| CAATAACAATGTGAAGGTGA+AGG | + | chr7.1:65484224-65484243 | MS.gene040259:CDS | 35.0% | |
| GACAAAGATTATTATGGACG+AGG | + | chr7.1:65483991-65484010 | MS.gene040259:intron | 35.0% | |
| GCTTGAAGTTGGCAAAATTA+TGG | - | chr7.1:65482939-65482958 | None:intergenic | 35.0% | |
| GTTATGGGTGTGATGTTAAT+GGG | + | chr7.1:65484166-65484185 | MS.gene040259:CDS | 35.0% | |
| TCAACTTGCGAACTTCATAA+CGG | - | chr7.1:65484338-65484357 | None:intergenic | 35.0% | |
| TGTCTCAAAAGTTGTCACAA+TGG | + | chr7.1:65484792-65484811 | MS.gene040259:intron | 35.0% | |
| TGTTGAGATACAAAGAGAAG+AGG | + | chr7.1:65484286-65484305 | MS.gene040259:CDS | 35.0% | |
| TTGAATGCTTGGTCTGATAA+AGG | + | chr7.1:65482670-65482689 | MS.gene040259:CDS | 35.0% | |
| TTTAAAGGCTGAGATTTCAC+TGG | + | chr7.1:65483516-65483535 | MS.gene040259:intron | 35.0% | |
| TTTGTACAGGTAATATGGGA+TGG | + | chr7.1:65484144-65484163 | MS.gene040259:intron | 35.0% | |
| TTTGTGTGTGACATCCATAA+TGG | + | chr7.1:65483934-65483953 | MS.gene040259:intron | 35.0% | |
| ! | AGTGATTTTGCCAACTTCAA+AGG | - | chr7.1:65482910-65482929 | None:intergenic | 35.0% |
| ! | AGTTTGAAGCTTGATCATGA+TGG | + | chr7.1:65482643-65482662 | MS.gene040259:CDS | 35.0% |
| ! | ATGATGGGATATTGAATGCT+TGG | + | chr7.1:65482659-65482678 | MS.gene040259:CDS | 35.0% |
| ! | CACCGACAACTTTTCATTAT+TGG | + | chr7.1:65483337-65483356 | MS.gene040259:intron | 35.0% |
| ! | GCAAGTTGAATGCTGAAAAA+CGG | + | chr7.1:65484349-65484368 | MS.gene040259:CDS | 35.0% |
| ! | GTTTGAAGCTTGATCATGAT+GGG | + | chr7.1:65482644-65482663 | MS.gene040259:CDS | 35.0% |
| ! | TTGTGCATGTGACTGATTTA+TGG | + | chr7.1:65483251-65483270 | MS.gene040259:intron | 35.0% |
| !! | TTATGTTGATGGTTGTGATG+AGG | + | chr7.1:65482699-65482718 | MS.gene040259:CDS | 35.0% |
| !!! | CTTTTGTGCATGTTTTTGGA+TGG | + | chr7.1:65483290-65483309 | MS.gene040259:intron | 35.0% |
| !!! | TTGAAACGACGTCGTTTTTT+GGG | + | chr7.1:65482614-65482633 | MS.gene040259:CDS | 35.0% |
| !!! | TTTGAAACGACGTCGTTTTT+TGG | + | chr7.1:65482613-65482632 | MS.gene040259:CDS | 35.0% |
| AAACAGGGCCATTGAAACAA+GGG | - | chr7.1:65483637-65483656 | None:intergenic | 40.0% | |
| AACAAATCAGGAACAGTCTG+AGG | - | chr7.1:65482727-65482746 | None:intergenic | 40.0% | |
| AAGATCCTAATCAAGGGGAA+TGG | - | chr7.1:65483565-65483584 | None:intergenic | 40.0% | |
| ACAGGAGAAAAATACACTGG+AGG | - | chr7.1:65483406-65483425 | None:intergenic | 40.0% | |
| AGACAAGGACTGACTAATCT+GGG | + | chr7.1:65485184-65485203 | MS.gene040259:intron | 40.0% | |
| AGAGACGAAGAAGGAAATGA+TGG | + | chr7.1:65482564-65482583 | MS.gene040259:CDS | 40.0% | |
| AGTTGTTGAAGAGACGAAGA+AGG | + | chr7.1:65482555-65482574 | MS.gene040259:CDS | 40.0% | |
| ATAATAGTCGTGACCCTTGT+CGG | + | chr7.1:65483820-65483839 | MS.gene040259:intron | 40.0% | |
| ATGAAGAGAGTGAAGAGAGA+TGG | + | chr7.1:65482518-65482537 | MS.gene040259:CDS | 40.0% | |
| ATTGAACCACCGAACAAATC+AGG | - | chr7.1:65482739-65482758 | None:intergenic | 40.0% | |
| ATTGAGTGTTCTTGCCTTCT+TGG | - | chr7.1:65484889-65484908 | None:intergenic | 40.0% | |
| CAAACAAGCAAACACCAAGA+AGG | + | chr7.1:65484872-65484891 | MS.gene040259:CDS | 40.0% | |
| CAGGTAATATGGGATGGTTA+TGG | + | chr7.1:65484150-65484169 | MS.gene040259:intron | 40.0% | |
| CAGTGTTATCATGATCCGAT+TGG | + | chr7.1:65482847-65482866 | MS.gene040259:intron | 40.0% | |
| GGTTATGGGTGTGATGTTAA+TGG | + | chr7.1:65484165-65484184 | MS.gene040259:CDS | 40.0% | |
| GTGAAGGTGAAGGAAGAAAT+GGG | + | chr7.1:65484234-65484253 | MS.gene040259:CDS | 40.0% | |
| GTGATGTTAATGGGAACACA+TGG | + | chr7.1:65484175-65484194 | MS.gene040259:CDS | 40.0% | |
| GTGTGAGCCACTCAATTAAT+TGG | - | chr7.1:65482985-65483004 | None:intergenic | 40.0% | |
| TGAAGAGAGTGAAGAGAGAT+GGG | + | chr7.1:65482519-65482538 | MS.gene040259:CDS | 40.0% | |
| TGAATCGACTACGTTAACAG+CGG | + | chr7.1:65482390-65482409 | MS.gene040259:CDS | 40.0% | |
| TGGAAAGTTCCTGAAGTTGT+TGG | + | chr7.1:65484195-65484214 | MS.gene040259:CDS | 40.0% | |
| TGTGAAGGTGAAGGAAGAAA+TGG | + | chr7.1:65484233-65484252 | MS.gene040259:CDS | 40.0% | |
| TTGCCAACTTCAAAGCCAAT+CGG | - | chr7.1:65482865-65482884 | None:intergenic | 40.0% | |
| TTGTTAGCTCCAACAACTTC+AGG | - | chr7.1:65484207-65484226 | None:intergenic | 40.0% | |
| ! | ATTTTGCCAACTTCAAGCTG+AGG | + | chr7.1:65482941-65482960 | MS.gene040259:intron | 40.0% |
| !! | AAGAAATGGGTTGGAAGCTT+GGG | + | chr7.1:65484247-65484266 | MS.gene040259:CDS | 40.0% |
| !! | CAGACTGTTCCTGATTTGTT+CGG | + | chr7.1:65482727-65482746 | MS.gene040259:CDS | 40.0% |
| !! | CTTCTTGGTGTTTGCTTGTT+TGG | - | chr7.1:65484874-65484893 | None:intergenic | 40.0% |
| !!! | GTCCTGCCTTCGTTTTATTT+GGG | - | chr7.1:65484852-65484871 | None:intergenic | 40.0% |
| AATGCTCAATTCCTCCGACA+AGG | - | chr7.1:65483837-65483856 | None:intergenic | 45.0% | |
| ACGTCTGTACCTACTATGAG+TGG | - | chr7.1:65485112-65485131 | None:intergenic | 45.0% | |
| AGGAGTCATTGTCAGTGATG+AGG | + | chr7.1:65482437-65482456 | MS.gene040259:CDS | 45.0% | |
| AGGATCCATTCCCCTTGATT+AGG | + | chr7.1:65483557-65483576 | MS.gene040259:intron | 45.0% | |
| AGGTGAAGGAAGAAATGGGT+TGG | + | chr7.1:65484238-65484257 | MS.gene040259:CDS | 45.0% | |
| ATGCCACACCCTAACAAAGA+AGG | + | chr7.1:65484988-65485007 | MS.gene040259:CDS | 45.0% | |
| ATGCTCAATTCCTCCGACAA+GGG | - | chr7.1:65483836-65483855 | None:intergenic | 45.0% | |
| ATTCCCACACTGCAGAAAAC+AGG | - | chr7.1:65483424-65483443 | None:intergenic | 45.0% | |
| CAAACAGGGCCATTGAAACA+AGG | - | chr7.1:65483638-65483657 | None:intergenic | 45.0% | |
| CACCCAAATAAAACGAAGGC+AGG | + | chr7.1:65484847-65484866 | MS.gene040259:intron | 45.0% | |
| CAGACAAGGACTGACTAATC+TGG | + | chr7.1:65485183-65485202 | MS.gene040259:intron | 45.0% | |
| CCAGTCAACCATAGGTAGAT+CGG | + | chr7.1:65485028-65485047 | MS.gene040259:intron | 45.0% | |
| CGTCTGTACCTACTATGAGT+GGG | - | chr7.1:65485111-65485130 | None:intergenic | 45.0% | |
| CTTGTTTCAATGGCCCTGTT+TGG | + | chr7.1:65483636-65483655 | MS.gene040259:intron | 45.0% | |
| GACGAAGAAGGAAATGATGG+AGG | + | chr7.1:65482567-65482586 | MS.gene040259:CDS | 45.0% | |
| GGAAACTCGGTATACAGACA+AGG | + | chr7.1:65485169-65485188 | MS.gene040259:intron | 45.0% | |
| GTAAGAGGCCTGCTTGATTA+GGG | + | chr7.1:65483370-65483389 | MS.gene040259:intron | 45.0% | |
| GTAGAGTTTCTCGGAGTTAC+AGG | - | chr7.1:65484948-65484967 | None:intergenic | 45.0% | |
| GTTACAGGTCTGAGGATTTG+TGG | - | chr7.1:65484933-65484952 | None:intergenic | 45.0% | |
| TAAGAGGCCTGCTTGATTAG+GGG | + | chr7.1:65483371-65483390 | MS.gene040259:intron | 45.0% | |
| TACAGACGTAACCAGGATAG+AGG | + | chr7.1:65485123-65485142 | MS.gene040259:intron | 45.0% | |
| TACCTACTATGAGTGGGAAG+TGG | - | chr7.1:65485105-65485124 | None:intergenic | 45.0% | |
| TAGTAGGTACAGACGTAACC+AGG | + | chr7.1:65485116-65485135 | MS.gene040259:intron | 45.0% | |
| TATCTGCTCCAACACAAGAC+CGG | + | chr7.1:65485077-65485096 | MS.gene040259:intron | 45.0% | |
| TCATCTCCTCAGCTTGAAGT+TGG | - | chr7.1:65482950-65482969 | None:intergenic | 45.0% | |
| TCTGCCACCCTTCTTTGTTA+GGG | - | chr7.1:65484999-65485018 | None:intergenic | 45.0% | |
| TGCCACACCCTAACAAAGAA+GGG | + | chr7.1:65484989-65485008 | MS.gene040259:CDS | 45.0% | |
| ! | ATTGTCAGTGATGAGGTGTC+CGG | + | chr7.1:65482444-65482463 | MS.gene040259:CDS | 45.0% |
| ! | TCTCCTGTTTTCTGCAGTGT+GGG | + | chr7.1:65483418-65483437 | MS.gene040259:intron | 45.0% |
| ! | TTCTCCTGTTTTCTGCAGTG+TGG | + | chr7.1:65483417-65483436 | MS.gene040259:intron | 45.0% |
| !! | ACTGTTCCTGATTTGTTCGG+TGG | + | chr7.1:65482730-65482749 | MS.gene040259:CDS | 45.0% |
| !! | GAAGAAATGGGTTGGAAGCT+TGG | + | chr7.1:65484246-65484265 | MS.gene040259:CDS | 45.0% |
| !! | GATCCGATTGGCTTTGAAGT+TGG | + | chr7.1:65482859-65482878 | MS.gene040259:intron | 45.0% |
| !! | GCGATGATTGCCTTTGAAGT+TGG | + | chr7.1:65482897-65482916 | MS.gene040259:intron | 45.0% |
| !! | GGTCCTGCCTTCGTTTTATT+TGG | - | chr7.1:65484853-65484872 | None:intergenic | 45.0% |
| AATGGATCCTCTCCAGTGAC+TGG | - | chr7.1:65483547-65483566 | None:intergenic | 50.0% | |
| ACCAACCCTTGATCCATCAC+CGG | - | chr7.1:65482466-65482485 | None:intergenic | 50.0% | |
| AGCCACTTCCCACTCATAGT+AGG | + | chr7.1:65485100-65485119 | MS.gene040259:intron | 50.0% | |
| CACACCCTAACAAAGAAGGG+TGG | + | chr7.1:65484992-65485011 | MS.gene040259:CDS | 50.0% | |
| CACCCTTCTTTGTTAGGGTG+TGG | - | chr7.1:65484994-65485013 | None:intergenic | 50.0% | |
| CCGATCTACCTATGGTTGAC+TGG | - | chr7.1:65485031-65485050 | None:intergenic | 50.0% | |
| CTAACAAAGAAGGGTGGCAG+AGG | + | chr7.1:65484998-65485017 | MS.gene040259:CDS | 50.0% | |
| CTCTGCCACCCTTCTTTGTT+AGG | - | chr7.1:65485000-65485019 | None:intergenic | 50.0% | |
| GGAAAGCAATGAGGAGGAAG+AGG | + | chr7.1:65482488-65482507 | MS.gene040259:CDS | 50.0% | |
| GGTAAGAGGCCTGCTTGATT+AGG | + | chr7.1:65483369-65483388 | MS.gene040259:intron | 50.0% | |
| GTGTTGGAGCAGATAGCGTT+GGG | - | chr7.1:65485072-65485091 | None:intergenic | 50.0% | |
| GTTGGGTGAAGGGGTAGTTA+CGG | - | chr7.1:65485055-65485074 | None:intergenic | 50.0% | |
| TGAAAAACGGCCGAGGATGA+AGG | + | chr7.1:65484362-65484381 | MS.gene040259:CDS | 50.0% | |
| TGAATGCTGAAAAACGGCCG+AGG | + | chr7.1:65484355-65484374 | MS.gene040259:CDS | 50.0% | |
| TGGTGAGGAAAGCAATGAGG+AGG | + | chr7.1:65482482-65482501 | MS.gene040259:CDS | 50.0% | |
| TGTGTTGGAGCAGATAGCGT+TGG | - | chr7.1:65485073-65485092 | None:intergenic | 50.0% | |
| TTCTCGGAGTTACAGGTCTG+AGG | - | chr7.1:65484941-65484960 | None:intergenic | 50.0% | |
| TTGGGTGAAGGGGTAGTTAC+GGG | - | chr7.1:65485054-65485073 | None:intergenic | 50.0% | |
| ! | ACCTATGGTTGACTGGTTGC+TGG | - | chr7.1:65485024-65485043 | None:intergenic | 50.0% |
| ! | AGCAGATAGCGTTGGGTGAA+GGG | - | chr7.1:65485065-65485084 | None:intergenic | 50.0% |
| !! | GGTTGGTGAGGAAAGCAATG+AGG | + | chr7.1:65482479-65482498 | MS.gene040259:CDS | 50.0% |
| !! | TGATGGATCAAGGGTTGGTG+AGG | + | chr7.1:65482467-65482486 | MS.gene040259:CDS | 50.0% |
| AGGCCTGCTTGATTAGGGGA+GGG | + | chr7.1:65483375-65483394 | MS.gene040259:intron | 55.0% | |
| ATAGTCGTGACCCTTGTCGG+AGG | + | chr7.1:65483823-65483842 | MS.gene040259:intron | 55.0% | |
| ATCCCCTCCCCTAATCAAGC+AGG | - | chr7.1:65483381-65483400 | None:intergenic | 55.0% | |
| CTATGAGTGGGAAGTGGCTC+CGG | - | chr7.1:65485099-65485118 | None:intergenic | 55.0% | |
| GACGGTGGAGCAACGCTAAA+CGG | + | chr7.1:65482355-65482374 | MS.gene040259:CDS | 55.0% | |
| GATCCTCTCCAGTGACTGGA+GGG | - | chr7.1:65483543-65483562 | None:intergenic | 55.0% | |
| GCCAGCAACCAGTCAACCAT+AGG | + | chr7.1:65485020-65485039 | MS.gene040259:CDS | 55.0% | |
| GCGTTGCTCTTCACATCCGA+CGG | + | chr7.1:65482337-65482356 | MS.gene040259:CDS | 55.0% | |
| GTTACGGGCCGATCTACCTA+TGG | - | chr7.1:65485039-65485058 | None:intergenic | 55.0% | |
| GTTTAGCGTTGCTCCACCGT+CGG | - | chr7.1:65482356-65482375 | None:intergenic | 55.0% | |
| TTGCTCTTCACATCCGACGG+TGG | + | chr7.1:65482340-65482359 | MS.gene040259:CDS | 55.0% | |
| TTGGAAGCTTGGGCAGAGAG+AGG | + | chr7.1:65484257-65484276 | MS.gene040259:CDS | 55.0% | |
| ! | AACAGCGGTGATGACGACGA+CGG | + | chr7.1:65482405-65482424 | MS.gene040259:CDS | 55.0% |
| ! | AAGTGGCTCCGGTCTTGTGT+TGG | - | chr7.1:65485088-65485107 | None:intergenic | 55.0% |
| ! | AGTGATGAGGTGTCCGGTGA+TGG | + | chr7.1:65482450-65482469 | MS.gene040259:CDS | 55.0% |
| ! | GAGCAGATAGCGTTGGGTGA+AGG | - | chr7.1:65485066-65485085 | None:intergenic | 55.0% |
| ! | GCAGATAGCGTTGGGTGAAG+GGG | - | chr7.1:65485064-65485083 | None:intergenic | 55.0% |
| !! | AGGTGTCCGGTGATGGATCA+AGG | + | chr7.1:65482457-65482476 | MS.gene040259:CDS | 55.0% |
| !! | GGTGTCCGGTGATGGATCAA+GGG | + | chr7.1:65482458-65482477 | MS.gene040259:CDS | 55.0% |
| !! | TCCGGTGATGGATCAAGGGT+TGG | + | chr7.1:65482462-65482481 | MS.gene040259:CDS | 55.0% |
| GACGACGACGGAGGAAGAAG+AGG | + | chr7.1:65482417-65482436 | MS.gene040259:CDS | 60.0% | |
| GAGGCCTGCTTGATTAGGGG+AGG | + | chr7.1:65483374-65483393 | MS.gene040259:intron | 60.0% | |
| GGATCCTCTCCAGTGACTGG+AGG | - | chr7.1:65483544-65483563 | None:intergenic | 60.0% | |
| GGCCTGCTTGATTAGGGGAG+GGG | + | chr7.1:65483376-65483395 | MS.gene040259:intron | 60.0% | |
| TCACTGGACCCTCCAGTCAC+TGG | + | chr7.1:65483532-65483551 | MS.gene040259:intron | 60.0% | |
| GGACCCTCCAGTCACTGGAG+AGG | + | chr7.1:65483537-65483556 | MS.gene040259:intron | 65.0% | |
| ! | AGCGGTGATGACGACGACGG+AGG | + | chr7.1:65482408-65482427 | MS.gene040259:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.1 | gene | 65482316 | 65485210 | 65482316 | ID=MS.gene040259 |
| chr7.1 | mRNA | 65482316 | 65485210 | 65482316 | ID=MS.gene040259.t1;Parent=MS.gene040259 |
| chr7.1 | exon | 65482316 | 65482768 | 65482316 | ID=MS.gene040259.t1.exon1;Parent=MS.gene040259.t1 |
| chr7.1 | CDS | 65482316 | 65482768 | 65482316 | ID=cds.MS.gene040259.t1;Parent=MS.gene040259.t1 |
| chr7.1 | exon | 65484153 | 65484383 | 65484153 | ID=MS.gene040259.t1.exon2;Parent=MS.gene040259.t1 |
| chr7.1 | CDS | 65484153 | 65484383 | 65484153 | ID=cds.MS.gene040259.t1;Parent=MS.gene040259.t1 |
| chr7.1 | exon | 65484869 | 65485041 | 65484869 | ID=MS.gene040259.t1.exon3;Parent=MS.gene040259.t1 |
| chr7.1 | CDS | 65484869 | 65485041 | 65484869 | ID=cds.MS.gene040259.t1;Parent=MS.gene040259.t1 |
| chr7.1 | exon | 65485186 | 65485210 | 65485186 | ID=MS.gene040259.t1.exon4;Parent=MS.gene040259.t1 |
| chr7.1 | CDS | 65485186 | 65485210 | 65485186 | ID=cds.MS.gene040259.t1;Parent=MS.gene040259.t1 |
| Gene Sequence |
| Protein sequence |
