Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene040318.t1 | PNX89523.1 | 39.6 | 338 | 188 | 5 | 17 | 352 | 11 | 334 | 8.80E-11 | 78.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene040318.t1 | A0A2K3MFE8 | 39.6 | 338 | 188 | 5 | 17 | 352 | 11 | 334 | 6.3e-11 | 78.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene040318.t1 | TF | B3 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 121 sgRNAs with CRISPR-Local
Find 163 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATTATGTGGAGGCGGATTT+TGG | 0.148513 | 7.4:-70867769 | None:intergenic |
| TTCCTCCGGCGGCATTTCTC+AGG | 0.275496 | 7.4:+70868225 | MS.gene040318:CDS |
| AGATTTGTTGCACGAGTGTT+TGG | 0.301888 | 7.4:+70868116 | MS.gene040318:CDS |
| CCTGATTGCTGCCGAGATAC+TGG | 0.331416 | 7.4:+70867526 | MS.gene040318:CDS |
| TTCGGGATGAGGAGGAGAAT+TGG | 0.336432 | 7.4:-70867705 | None:intergenic |
| ACTCGTGCAACAAATCTTCT+TGG | 0.342234 | 7.4:-70868110 | None:intergenic |
| GGTGGGAATGTGGCTAATAA+TGG | 0.350488 | 7.4:+70867920 | MS.gene040318:CDS |
| CTATAGGCTAAGGAGTTTGC+TGG | 0.354712 | 7.4:+70867367 | MS.gene040318:CDS |
| ACTCCTTAGCCTATAGAAAA+AGG | 0.359699 | 7.4:-70867360 | None:intergenic |
| TAAGACACACTTACCTTGTC+TGG | 0.362065 | 7.4:-70866541 | None:intergenic |
| TTCAACTCCTGTGGCAGAAC+CGG | 0.369949 | 7.4:+70867658 | MS.gene040318:CDS |
| TCCCTAGCATACATAACATA+TGG | 0.379144 | 7.4:-70868326 | None:intergenic |
| GACACAAGAGGTTCGAGGTT+TGG | 0.386987 | 7.4:+70867308 | MS.gene040318:CDS |
| TCATGGCCGCGCTTACATTC+AGG | 0.392786 | 7.4:+70866497 | None:intergenic |
| TGGCAGTTGGGAAAAGTGTT+AGG | 0.395161 | 7.4:+70868282 | MS.gene040318:CDS |
| GGCATTGTGTGGTTGTTGAT+TGG | 0.403874 | 7.4:-70867738 | None:intergenic |
| TGATTGGCATCATGAACTTC+GGG | 0.411728 | 7.4:-70867722 | None:intergenic |
| CGGAGAACCGGCTGGCAGTT+GGG | 0.421662 | 7.4:+70868270 | MS.gene040318:CDS |
| TGATGCTGCTGCTGTTGCCA+TGG | 0.428743 | 7.4:+70867871 | MS.gene040318:CDS |
| TCCTCCGGCGGCATTTCTCA+GGG | 0.436877 | 7.4:+70868226 | MS.gene040318:CDS |
| CGGACAGGGGCTGTTCTACA+TGG | 0.447788 | 7.4:+70867436 | MS.gene040318:CDS |
| TCGGGATGAGGAGGAGAATT+GGG | 0.451241 | 7.4:-70867704 | None:intergenic |
| GACGATGATTCCATCGATCT+TGG | 0.451452 | 7.4:+70867605 | MS.gene040318:CDS |
| GATTTGTTGCACGAGTGTTT+GGG | 0.452697 | 7.4:+70868117 | MS.gene040318:CDS |
| AGAGATTTGTTACGGAGAAC+CGG | 0.452877 | 7.4:+70868258 | MS.gene040318:CDS |
| TGGGCTTTGACTTTCTGTGC+AGG | 0.454708 | 7.4:+70868177 | MS.gene040318:CDS |
| GTGGGAATGTGGCTAATAAT+GGG | 0.456886 | 7.4:+70867921 | MS.gene040318:CDS |
| CCAGTATCTCGGCAGCAATC+AGG | 0.457630 | 7.4:-70867526 | None:intergenic |
| GAGCACTTCCACCAGCCGTT+AGG | 0.466631 | 7.4:+70867389 | MS.gene040318:CDS |
| CGAGATACTGGATCCCTTGG+AGG | 0.468114 | 7.4:+70867538 | MS.gene040318:CDS |
| ATCGTCGTCGTTGTCTTCAT+CGG | 0.472155 | 7.4:-70867588 | None:intergenic |
| ACATCAACATCCGCTGGATC+CGG | 0.472816 | 7.4:-70867677 | None:intergenic |
| TTGATTGGCATCATGAACTT+CGG | 0.473733 | 7.4:-70867723 | None:intergenic |
| ATGAACTACGACACAGAGTC+TGG | 0.481562 | 7.4:+70867279 | MS.gene040318:CDS |
| ACAGGAGTTGAAGGAGGTGC+AGG | 0.491094 | 7.4:-70867647 | None:intergenic |
| CATGGTGAAGACTAGCAATC+TGG | 0.491937 | 7.4:+70867979 | MS.gene040318:CDS |
| ACGGAGAACCGGCTGGCAGT+TGG | 0.492128 | 7.4:+70868269 | MS.gene040318:CDS |
| GCTGGATCCGGTTCTGCCAC+AGG | 0.493035 | 7.4:-70867665 | None:intergenic |
| GATGCTGCTGCTGTTGCCAT+GGG | 0.497052 | 7.4:+70867872 | MS.gene040318:CDS |
| GGACAGAGGCCATCTTCCTC+CGG | 0.503311 | 7.4:+70868211 | MS.gene040318:CDS |
| CGGCGGCATTTCTCAGGGGC+GGG | 0.503464 | 7.4:+70868231 | MS.gene040318:CDS |
| CCCTAGCATACATAACATAT+GGG | 0.511261 | 7.4:-70868325 | None:intergenic |
| GCATCATGAACTTCGGGATG+AGG | 0.512150 | 7.4:-70867716 | None:intergenic |
| GGTTCTGCCACAGGAGTTGA+AGG | 0.512252 | 7.4:-70867656 | None:intergenic |
| TCATAGGAAGTGAGGGGACG+CGG | 0.513245 | 7.4:+70867336 | MS.gene040318:CDS |
| AACGATGAAGATGTGGAAGA+TGG | 0.513612 | 7.4:+70867821 | MS.gene040318:CDS |
| GCAAAATCAAAGAAATTATG+TGG | 0.521917 | 7.4:-70867782 | None:intergenic |
| TGCCGAGATACTGGATCCCT+TGG | 0.522650 | 7.4:+70867535 | MS.gene040318:CDS |
| TCATACTTCAACAACCACTT+TGG | 0.527976 | 7.4:+70867254 | MS.gene040318:CDS |
| ACCCATATGTTATGTATGCT+AGG | 0.529159 | 7.4:+70868324 | MS.gene040318:CDS |
| CGGCATTTCTCAGGGGCGGG+TGG | 0.532162 | 7.4:+70868234 | MS.gene040318:CDS |
| GTATGCTAGGGAAGCTCGGA+TGG | 0.537149 | 7.4:+70868337 | MS.gene040318:CDS |
| AAGTGGTTGTTGAAGTATGA+TGG | 0.538484 | 7.4:-70867251 | None:intergenic |
| AACATCAATGCCAAGATCGA+TGG | 0.539611 | 7.4:-70867615 | None:intergenic |
| GCGTCTAAGTTACAACGGAC+AGG | 0.542298 | 7.4:+70867421 | MS.gene040318:CDS |
| CATCCTACTTACAGATGCCA+TGG | 0.546268 | 7.4:+70868157 | MS.gene040318:CDS |
| ATTTGTTACGGAGAACCGGC+TGG | 0.553165 | 7.4:+70868262 | MS.gene040318:CDS |
| CCGGCGGCATTTCTCAGGGG+CGG | 0.554229 | 7.4:+70868230 | MS.gene040318:CDS |
| TCAAAGAAATTATGTGGAGG+CGG | 0.554584 | 7.4:-70867776 | None:intergenic |
| ATCTTCATCGTTGATATCCA+TGG | 0.554841 | 7.4:-70867810 | None:intergenic |
| CCCATATGTTATGTATGCTA+GGG | 0.556719 | 7.4:+70868325 | MS.gene040318:CDS |
| ACTCGACATGACCGAGCTAA+CGG | 0.557804 | 7.4:+70867469 | MS.gene040318:CDS |
| CTCCAAGGGATCCAGTATCT+CGG | 0.558445 | 7.4:-70867537 | None:intergenic |
| TAGAAGACACAAGAGGTTCG+AGG | 0.561323 | 7.4:+70867303 | MS.gene040318:CDS |
| TGTGGCTAATAATGGGAGAG+TGG | 0.562385 | 7.4:+70867928 | MS.gene040318:CDS |
| ACTTTCTGTGCAGGATCAAG+TGG | 0.566018 | 7.4:+70868186 | MS.gene040318:CDS |
| TGCACCTCCTTCAACTCCTG+TGG | 0.569911 | 7.4:+70867649 | MS.gene040318:CDS |
| GGTGCAACATCAACATCCGC+TGG | 0.570592 | 7.4:-70867683 | None:intergenic |
| GTATAATTCATACTCCTCCA+AGG | 0.570762 | 7.4:-70867552 | None:intergenic |
| TTATGTATGCTAGGGAAGCT+CGG | 0.572454 | 7.4:+70868333 | MS.gene040318:CDS |
| GGCATCTGTAAGTAGGATGG+TGG | 0.575659 | 7.4:-70868153 | None:intergenic |
| CGTCTAAGTTACAACGGACA+GGG | 0.576116 | 7.4:+70867422 | MS.gene040318:CDS |
| GGTGAAAACATGGGTGCAGG+TGG | 0.578164 | 7.4:+70867902 | MS.gene040318:CDS |
| GAAATGCCGCCGGAGGAAGA+TGG | 0.581201 | 7.4:-70868220 | None:intergenic |
| CATGGGTGCAGGTGGGAATG+TGG | 0.582106 | 7.4:+70867910 | MS.gene040318:CDS |
| CCTCTCACGAACCGTTAGCT+CGG | 0.586517 | 7.4:-70867480 | None:intergenic |
| CGGGTGGAAGAGATTTGTTA+CGG | 0.590170 | 7.4:+70868250 | MS.gene040318:CDS |
| CCGAGCTAACGGTTCGTGAG+AGG | 0.592918 | 7.4:+70867480 | MS.gene040318:CDS |
| GGAGTTGAAGGAGGTGCAGG+AGG | 0.595751 | 7.4:-70867644 | None:intergenic |
| GGGTAACAATGGTGAAAACA+TGG | 0.597431 | 7.4:+70867892 | MS.gene040318:CDS |
| TGTGGCAGAACCGGATCCAG+CGG | 0.598738 | 7.4:+70867667 | MS.gene040318:CDS |
| TCATGAACTTCGGGATGAGG+AGG | 0.603718 | 7.4:-70867713 | None:intergenic |
| CCCCTGAGAAATGCCGCCGG+AGG | 0.604022 | 7.4:-70868227 | None:intergenic |
| CATGGCATCTGTAAGTAGGA+TGG | 0.604155 | 7.4:-70868156 | None:intergenic |
| GTGCAACAAATCTTCTTGGT+AGG | 0.604465 | 7.4:-70868106 | None:intergenic |
| TCGGCAGCAATCAGGAAAGG+AGG | 0.606699 | 7.4:-70867518 | None:intergenic |
| GCAGTATGAGACCTAACGGC+TGG | 0.608111 | 7.4:-70867400 | None:intergenic |
| AGCCCATGGCATCTGTAAGT+AGG | 0.608677 | 7.4:-70868160 | None:intergenic |
| CACAACAATCGATCCAGACA+AGG | 0.610416 | 7.4:+70866528 | MS.gene040318:CDS |
| ATCTCGGCAGCAATCAGGAA+AGG | 0.610893 | 7.4:-70867521 | None:intergenic |
| ATCCTACTTACAGATGCCAT+GGG | 0.611432 | 7.4:+70868158 | MS.gene040318:CDS |
| TGTCAGACTTGCAGAATACA+TGG | 0.612787 | 7.4:+70867961 | MS.gene040318:CDS |
| CAGAGGCCATCTTCCTCCGG+CGG | 0.613392 | 7.4:+70868214 | MS.gene040318:CDS |
| GGATATCAACGATGAAGATG+TGG | 0.616665 | 7.4:+70867814 | MS.gene040318:CDS |
| TATAATTCATACTCCTCCAA+GGG | 0.616989 | 7.4:-70867551 | None:intergenic |
| GTATGAGACCTAACGGCTGG+TGG | 0.617542 | 7.4:-70867397 | None:intergenic |
| CGGCAGCAATCAGGAAAGGA+GGG | 0.618638 | 7.4:-70867517 | None:intergenic |
| AATGGTGAAAACATGGGTGC+AGG | 0.619307 | 7.4:+70867899 | MS.gene040318:CDS |
| CCTCCGGCGGCATTTCTCAG+GGG | 0.623483 | 7.4:+70868227 | MS.gene040318:CDS |
| CCGCCCCTGAGAAATGCCGC+CGG | 0.627703 | 7.4:-70868230 | None:intergenic |
| GCATCTGTAAGTAGGATGGT+GGG | 0.632206 | 7.4:-70868152 | None:intergenic |
| GCACAGAAAGTCAAAGCCCA+TGG | 0.634938 | 7.4:-70868174 | None:intergenic |
| TGGGCATCATCGGCATTGTG+TGG | 0.641687 | 7.4:-70867749 | None:intergenic |
| GTCGTAGTTCATCACCAAAG+TGG | 0.648562 | 7.4:-70867268 | None:intergenic |
| TCTGTGCAGGATCAAGTGGA+AGG | 0.648921 | 7.4:+70868190 | MS.gene040318:CDS |
| AGACGCAGTATGAGACCTAA+CGG | 0.653534 | 7.4:-70867404 | None:intergenic |
| GCTGTTGCCATGGGTAACAA+TGG | 0.655928 | 7.4:+70867881 | MS.gene040318:CDS |
| GCAGCATCAAAGAAGTTATG+CGG | 0.656305 | 7.4:-70867857 | None:intergenic |
| GGACAGGGGCTGTTCTACAT+GGG | 0.657468 | 7.4:+70867437 | MS.gene040318:CDS |
| GAACTTCCTGAATGTAAGCG+CGG | 0.670661 | 7.4:-70866503 | None:intergenic |
| GTGAAAACATGGGTGCAGGT+GGG | 0.671071 | 7.4:+70867903 | MS.gene040318:CDS |
| GTTGTCTTCATCGGATGACG+AGG | 0.675992 | 7.4:-70867579 | None:intergenic |
| GCATCAAAGAAGTTATGCGG+AGG | 0.686757 | 7.4:-70867854 | None:intergenic |
| AGGATCAAGTGGAAGGACAG+AGG | 0.686964 | 7.4:+70868197 | MS.gene040318:CDS |
| GTCTGGTTAGAAGACACAAG+AGG | 0.687596 | 7.4:+70867296 | MS.gene040318:CDS |
| ATACTGCGTCTAAGTTACAA+CGG | 0.691908 | 7.4:+70867416 | MS.gene040318:CDS |
| AAATCAAAGAAATTATGTGG+AGG | 0.696121 | 7.4:-70867779 | None:intergenic |
| TCTGCCACAGGAGTTGAAGG+AGG | 0.696157 | 7.4:-70867653 | None:intergenic |
| TCTGTAAGTAGGATGGTGGG+CGG | 0.704271 | 7.4:-70868149 | None:intergenic |
| GTCTAAGTTACAACGGACAG+GGG | 0.730281 | 7.4:+70867423 | MS.gene040318:CDS |
| GGTAACAATGGTGAAAACAT+GGG | 0.742892 | 7.4:+70867893 | MS.gene040318:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTATTTAAAAAAGAACAC+AGG | + | chr7.4:70867134-70867153 | MS.gene040318:intron | 15.0% |
| !!! | AAATGATAACAATTTAAAAC+AGG | - | chr7.4:70868076-70868095 | None:intergenic | 15.0% |
| !!! | AATTACTGTTATATAGTTTT+TGG | + | chr7.4:70868035-70868054 | MS.gene040318:intron | 15.0% |
| ! | AAATCAAAGAAATTATGTGG+AGG | - | chr7.4:70867782-70867801 | None:intergenic | 25.0% |
| ! | AGTACACAAAATCTTAGATA+CGG | - | chr7.4:70866794-70866813 | None:intergenic | 25.0% |
| ! | GCAAAATCAAAGAAATTATG+TGG | - | chr7.4:70867785-70867804 | None:intergenic | 25.0% |
| !!! | CATTTGTTGTTACATGTTTA+AGG | + | chr7.4:70866681-70866700 | MS.gene040318:intron | 25.0% |
| AAATATATTGCAGAGTGACA+AGG | - | chr7.4:70866877-70866896 | None:intergenic | 30.0% | |
| AGTACACATTATCGTAGATA+CGG | - | chr7.4:70866981-70867000 | None:intergenic | 30.0% | |
| TATAATTCATACTCCTCCAA+GGG | - | chr7.4:70867554-70867573 | None:intergenic | 30.0% | |
| TTGTTACTAAACTTTGAGTG+TGG | + | chr7.4:70866578-70866597 | MS.gene040318:intron | 30.0% | |
| !! | ATCTAAGATTTTGTGTACTC+TGG | + | chr7.4:70866795-70866814 | MS.gene040318:intron | 30.0% |
| AAAATCTACCGGATACCAAA+AGG | - | chr7.4:70866652-70866671 | None:intergenic | 35.0% | |
| AAATCTACCGGATACCAAAA+GGG | - | chr7.4:70866651-70866670 | None:intergenic | 35.0% | |
| AAGTGGTTGTTGAAGTATGA+TGG | - | chr7.4:70867254-70867273 | None:intergenic | 35.0% | |
| ACCCATATGTTATGTATGCT+AGG | + | chr7.4:70868324-70868343 | MS.gene040318:CDS | 35.0% | |
| ACTCCTTAGCCTATAGAAAA+AGG | - | chr7.4:70867363-70867382 | None:intergenic | 35.0% | |
| ATACTGCGTCTAAGTTACAA+CGG | + | chr7.4:70867416-70867435 | MS.gene040318:CDS | 35.0% | |
| ATCTTCATCGTTGATATCCA+TGG | - | chr7.4:70867813-70867832 | None:intergenic | 35.0% | |
| ATTACAGAGTGACAACAAAC+AGG | - | chr7.4:70866838-70866857 | None:intergenic | 35.0% | |
| ATTACAGAGTGACAACAAAC+TGG | - | chr7.4:70866838-70866857 | None:intergenic | 35.0% | |
| CCCATATGTTATGTATGCTA+GGG | + | chr7.4:70868325-70868344 | MS.gene040318:CDS | 35.0% | |
| CCCTAGCATACATAACATAT+GGG | - | chr7.4:70868328-70868347 | None:intergenic | 35.0% | |
| GGTAACAATGGTGAAAACAT+GGG | + | chr7.4:70867893-70867912 | MS.gene040318:CDS | 35.0% | |
| GTATAATTCATACTCCTCCA+AGG | - | chr7.4:70867555-70867574 | None:intergenic | 35.0% | |
| TCAAAGAAATTATGTGGAGG+CGG | - | chr7.4:70867779-70867798 | None:intergenic | 35.0% | |
| TCATACTTCAACAACCACTT+TGG | + | chr7.4:70867254-70867273 | MS.gene040318:CDS | 35.0% | |
| TCCCTAGCATACATAACATA+TGG | - | chr7.4:70868329-70868348 | None:intergenic | 35.0% | |
| TTACAGAGTGACAACAAACT+GGG | - | chr7.4:70867024-70867043 | None:intergenic | 35.0% | |
| TTCTTGTGTGTGCATAATAG+TGG | - | chr7.4:70866770-70866789 | None:intergenic | 35.0% | |
| TTGATTGGCATCATGAACTT+CGG | - | chr7.4:70867726-70867745 | None:intergenic | 35.0% | |
| TTTACAGAGTGACATCAAAC+TGG | - | chr7.4:70867063-70867082 | None:intergenic | 35.0% | |
| ! | GAAGTTGTCACTTGTAATGT+AGG | + | chr7.4:70867214-70867233 | MS.gene040318:intron | 35.0% |
| ! | TTATTTTCCTGTCTCCCTTT+TGG | + | chr7.4:70866634-70866653 | MS.gene040318:intron | 35.0% |
| AACATCAATGCCAAGATCGA+TGG | - | chr7.4:70867618-70867637 | None:intergenic | 40.0% | |
| AACCAACAACAAGGCAAACA+TGG | - | chr7.4:70866903-70866922 | None:intergenic | 40.0% | |
| AACGATGAAGATGTGGAAGA+TGG | + | chr7.4:70867821-70867840 | MS.gene040318:CDS | 40.0% | |
| ACTCGTGCAACAAATCTTCT+TGG | - | chr7.4:70868113-70868132 | None:intergenic | 40.0% | |
| ATCCTACTTACAGATGCCAT+GGG | + | chr7.4:70868158-70868177 | MS.gene040318:CDS | 40.0% | |
| ATGTTTGCCTTCTTGTTGGT+TGG | + | chr7.4:70866713-70866732 | MS.gene040318:intron | 40.0% | |
| GACTATGTTTGCCTTCTTGT+TGG | + | chr7.4:70866709-70866728 | MS.gene040318:intron | 40.0% | |
| GCAGCATCAAAGAAGTTATG+CGG | - | chr7.4:70867860-70867879 | None:intergenic | 40.0% | |
| GGATATCAACGATGAAGATG+TGG | + | chr7.4:70867814-70867833 | MS.gene040318:CDS | 40.0% | |
| GGGTAACAATGGTGAAAACA+TGG | + | chr7.4:70867892-70867911 | MS.gene040318:CDS | 40.0% | |
| GTCACTTGTAATGTAGGATG+AGG | + | chr7.4:70867220-70867239 | MS.gene040318:intron | 40.0% | |
| GTGCAACAAATCTTCTTGGT+AGG | - | chr7.4:70868109-70868128 | None:intergenic | 40.0% | |
| GTGGGAATGTGGCTAATAAT+GGG | + | chr7.4:70867921-70867940 | MS.gene040318:CDS | 40.0% | |
| GTGTACTCTGGTTGTTAGAT+TGG | + | chr7.4:70866807-70866826 | MS.gene040318:intron | 40.0% | |
| TAAGACACACTTACCTTGTC+TGG | - | chr7.4:70866544-70866563 | None:intergenic | 40.0% | |
| TCATCATCCAACCAACAACA+AGG | - | chr7.4:70866912-70866931 | None:intergenic | 40.0% | |
| TCATCATCCAACCAACAAGA+AGG | - | chr7.4:70866723-70866742 | None:intergenic | 40.0% | |
| TGAAGCCATGCAAAATCTAC+CGG | - | chr7.4:70866663-70866682 | None:intergenic | 40.0% | |
| TGATTGGCATCATGAACTTC+GGG | - | chr7.4:70867725-70867744 | None:intergenic | 40.0% | |
| TGTCAGACTTGCAGAATACA+TGG | + | chr7.4:70867961-70867980 | MS.gene040318:CDS | 40.0% | |
| TTATGTATGCTAGGGAAGCT+CGG | + | chr7.4:70868333-70868352 | MS.gene040318:CDS | 40.0% | |
| ! | GGACCTTTTTCTATAGGCTA+AGG | + | chr7.4:70867357-70867376 | MS.gene040318:CDS | 40.0% |
| ! | GGTGTTTTCATAGGAAGTGA+GGG | + | chr7.4:70867329-70867348 | MS.gene040318:CDS | 40.0% |
| ! | GTGTTTTCATAGGAAGTGAG+GGG | + | chr7.4:70867330-70867349 | MS.gene040318:CDS | 40.0% |
| ! | GTTTTCACCATTGTTACCCA+TGG | - | chr7.4:70867891-70867910 | None:intergenic | 40.0% |
| ! | TGGTGTTTTCATAGGAAGTG+AGG | + | chr7.4:70867328-70867347 | MS.gene040318:CDS | 40.0% |
| !! | AATTATGTGGAGGCGGATTT+TGG | - | chr7.4:70867772-70867791 | None:intergenic | 40.0% |
| !! | AGAGATTTGTTACGGAGAAC+CGG | + | chr7.4:70868258-70868277 | MS.gene040318:CDS | 40.0% |
| !! | AGATTTGTTGCACGAGTGTT+TGG | + | chr7.4:70868116-70868135 | MS.gene040318:CDS | 40.0% |
| !! | ATGTTTGCCTTGTTGTTGGT+TGG | + | chr7.4:70866902-70866921 | MS.gene040318:intron | 40.0% |
| !! | ATTATGTGGAGGCGGATTTT+GGG | - | chr7.4:70867771-70867790 | None:intergenic | 40.0% |
| !! | GATTTGTTGCACGAGTGTTT+GGG | + | chr7.4:70868117-70868136 | MS.gene040318:CDS | 40.0% |
| !!! | TCGAGGTTTGGTGTTTTCAT+AGG | + | chr7.4:70867320-70867339 | MS.gene040318:CDS | 40.0% |
| AATGGTGAAAACATGGGTGC+AGG | + | chr7.4:70867899-70867918 | MS.gene040318:CDS | 45.0% | |
| ACTTTCTGTGCAGGATCAAG+TGG | + | chr7.4:70868186-70868205 | MS.gene040318:CDS | 45.0% | |
| AGACGCAGTATGAGACCTAA+CGG | - | chr7.4:70867407-70867426 | None:intergenic | 45.0% | |
| ATCGTCGTCGTTGTCTTCAT+CGG | - | chr7.4:70867591-70867610 | None:intergenic | 45.0% | |
| ATGAACTACGACACAGAGTC+TGG | + | chr7.4:70867279-70867298 | MS.gene040318:CDS | 45.0% | |
| CACAACAATCGATCCAGACA+AGG | + | chr7.4:70866528-70866547 | MS.gene040318:CDS | 45.0% | |
| CATCCTACTTACAGATGCCA+TGG | + | chr7.4:70868157-70868176 | MS.gene040318:CDS | 45.0% | |
| CATGGCATCTGTAAGTAGGA+TGG | - | chr7.4:70868159-70868178 | None:intergenic | 45.0% | |
| CATGGTGAAGACTAGCAATC+TGG | + | chr7.4:70867979-70867998 | MS.gene040318:CDS | 45.0% | |
| CGTCTAAGTTACAACGGACA+GGG | + | chr7.4:70867422-70867441 | MS.gene040318:CDS | 45.0% | |
| CTATAGGCTAAGGAGTTTGC+TGG | + | chr7.4:70867367-70867386 | MS.gene040318:CDS | 45.0% | |
| GAACTTCCTGAATGTAAGCG+CGG | - | chr7.4:70866506-70866525 | None:intergenic | 45.0% | |
| GACGATGATTCCATCGATCT+TGG | + | chr7.4:70867605-70867624 | MS.gene040318:CDS | 45.0% | |
| GCATCAAAGAAGTTATGCGG+AGG | - | chr7.4:70867857-70867876 | None:intergenic | 45.0% | |
| GCATCTGTAAGTAGGATGGT+GGG | - | chr7.4:70868155-70868174 | None:intergenic | 45.0% | |
| GGCATTGTGTGGTTGTTGAT+TGG | - | chr7.4:70867741-70867760 | None:intergenic | 45.0% | |
| GGTGGGAATGTGGCTAATAA+TGG | + | chr7.4:70867920-70867939 | MS.gene040318:CDS | 45.0% | |
| GTCGTAGTTCATCACCAAAG+TGG | - | chr7.4:70867271-70867290 | None:intergenic | 45.0% | |
| GTCTAAGTTACAACGGACAG+GGG | + | chr7.4:70867423-70867442 | MS.gene040318:CDS | 45.0% | |
| GTCTGGTTAGAAGACACAAG+AGG | + | chr7.4:70867296-70867315 | MS.gene040318:CDS | 45.0% | |
| GTGAAGACTAGCAATCTGGT+AGG | + | chr7.4:70867983-70868002 | MS.gene040318:intron | 45.0% | |
| TAGAAGACACAAGAGGTTCG+AGG | + | chr7.4:70867303-70867322 | MS.gene040318:CDS | 45.0% | |
| ! | GACCATGTTTGCCTTGTTGT+TGG | + | chr7.4:70866898-70866917 | MS.gene040318:intron | 45.0% |
| ! | GGTATCCGGTAGATTTTGCA+TGG | + | chr7.4:70866655-70866674 | MS.gene040318:intron | 45.0% |
| ! | TGTGGCTAATAATGGGAGAG+TGG | + | chr7.4:70867928-70867947 | MS.gene040318:CDS | 45.0% |
| !! | CGGGTGGAAGAGATTTGTTA+CGG | + | chr7.4:70868250-70868269 | MS.gene040318:CDS | 45.0% |
| !! | CTTTGATTTTGCTGCTGCCA+TGG | + | chr7.4:70867793-70867812 | MS.gene040318:CDS | 45.0% |
| !! | TGGCAGTTGGGAAAAGTGTT+AGG | + | chr7.4:70868282-70868301 | MS.gene040318:CDS | 45.0% |
| ACATCAACATCCGCTGGATC+CGG | - | chr7.4:70867680-70867699 | None:intergenic | 50.0% | |
| ACTCGACATGACCGAGCTAA+CGG | + | chr7.4:70867469-70867488 | MS.gene040318:CDS | 50.0% | |
| AGCCCATGGCATCTGTAAGT+AGG | - | chr7.4:70868163-70868182 | None:intergenic | 50.0% | |
| AGGATCAAGTGGAAGGACAG+AGG | + | chr7.4:70868197-70868216 | MS.gene040318:CDS | 50.0% | |
| ATCTCGGCAGCAATCAGGAA+AGG | - | chr7.4:70867524-70867543 | None:intergenic | 50.0% | |
| CTCCAAGGGATCCAGTATCT+CGG | - | chr7.4:70867540-70867559 | None:intergenic | 50.0% | |
| GACACAAGAGGTTCGAGGTT+TGG | + | chr7.4:70867308-70867327 | MS.gene040318:CDS | 50.0% | |
| GCACAGAAAGTCAAAGCCCA+TGG | - | chr7.4:70868177-70868196 | None:intergenic | 50.0% | |
| GCATCATGAACTTCGGGATG+AGG | - | chr7.4:70867719-70867738 | None:intergenic | 50.0% | |
| GCGTCTAAGTTACAACGGAC+AGG | + | chr7.4:70867421-70867440 | MS.gene040318:CDS | 50.0% | |
| GCTGTTGCCATGGGTAACAA+TGG | + | chr7.4:70867881-70867900 | MS.gene040318:CDS | 50.0% | |
| GGCATCTGTAAGTAGGATGG+TGG | - | chr7.4:70868156-70868175 | None:intergenic | 50.0% | |
| GTGAAAACATGGGTGCAGGT+GGG | + | chr7.4:70867903-70867922 | MS.gene040318:CDS | 50.0% | |
| GTTGTCTTCATCGGATGACG+AGG | - | chr7.4:70867582-70867601 | None:intergenic | 50.0% | |
| TCATGAACTTCGGGATGAGG+AGG | - | chr7.4:70867716-70867735 | None:intergenic | 50.0% | |
| TCGGGATGAGGAGGAGAATT+GGG | - | chr7.4:70867707-70867726 | None:intergenic | 50.0% | |
| TCTGTGCAGGATCAAGTGGA+AGG | + | chr7.4:70868190-70868209 | MS.gene040318:CDS | 50.0% | |
| TTCAACTCCTGTGGCAGAAC+CGG | + | chr7.4:70867658-70867677 | MS.gene040318:CDS | 50.0% | |
| TTCGGGATGAGGAGGAGAAT+TGG | - | chr7.4:70867708-70867727 | None:intergenic | 50.0% | |
| ! | ATTTGTTACGGAGAACCGGC+TGG | + | chr7.4:70868262-70868281 | MS.gene040318:CDS | 50.0% |
| ! | CCTGTCTCCCTTTTGGTATC+CGG | + | chr7.4:70866641-70866660 | MS.gene040318:intron | 50.0% |
| ! | GGACGCGGACCTTTTTCTAT+AGG | + | chr7.4:70867351-70867370 | MS.gene040318:CDS | 50.0% |
| ! | TGGGCTTTGACTTTCTGTGC+AGG | + | chr7.4:70868177-70868196 | MS.gene040318:CDS | 50.0% |
| !! | AGGCGGATTTTGGGCATCAT+CGG | - | chr7.4:70867762-70867781 | None:intergenic | 50.0% |
| !! | TCTGTAAGTAGGATGGTGGG+CGG | - | chr7.4:70868152-70868171 | None:intergenic | 50.0% |
| CCAGTATCTCGGCAGCAATC+AGG | - | chr7.4:70867529-70867548 | None:intergenic | 55.0% | |
| CCGGATACCAAAAGGGAGAC+AGG | - | chr7.4:70866644-70866663 | None:intergenic | 55.0% | |
| CCTCTCACGAACCGTTAGCT+CGG | - | chr7.4:70867483-70867502 | None:intergenic | 55.0% | |
| CCTGATTGCTGCCGAGATAC+TGG | + | chr7.4:70867526-70867545 | MS.gene040318:CDS | 55.0% | |
| CGAGATACTGGATCCCTTGG+AGG | + | chr7.4:70867538-70867557 | MS.gene040318:CDS | 55.0% | |
| CGGCAGCAATCAGGAAAGGA+GGG | - | chr7.4:70867520-70867539 | None:intergenic | 55.0% | |
| GATGCTGCTGCTGTTGCCAT+GGG | + | chr7.4:70867872-70867891 | MS.gene040318:CDS | 55.0% | |
| GCAGTATGAGACCTAACGGC+TGG | - | chr7.4:70867403-70867422 | None:intergenic | 55.0% | |
| GGACAGGGGCTGTTCTACAT+GGG | + | chr7.4:70867437-70867456 | MS.gene040318:CDS | 55.0% | |
| GGTGAAAACATGGGTGCAGG+TGG | + | chr7.4:70867902-70867921 | MS.gene040318:CDS | 55.0% | |
| GGTGCAACATCAACATCCGC+TGG | - | chr7.4:70867686-70867705 | None:intergenic | 55.0% | |
| GGTTCTGCCACAGGAGTTGA+AGG | - | chr7.4:70867659-70867678 | None:intergenic | 55.0% | |
| GTATGAGACCTAACGGCTGG+TGG | - | chr7.4:70867400-70867419 | None:intergenic | 55.0% | |
| GTATGCTAGGGAAGCTCGGA+TGG | + | chr7.4:70868337-70868356 | MS.gene040318:CDS | 55.0% | |
| TCATAGGAAGTGAGGGGACG+CGG | + | chr7.4:70867336-70867355 | MS.gene040318:CDS | 55.0% | |
| TCGGCAGCAATCAGGAAAGG+AGG | - | chr7.4:70867521-70867540 | None:intergenic | 55.0% | |
| TCTGCCACAGGAGTTGAAGG+AGG | - | chr7.4:70867656-70867675 | None:intergenic | 55.0% | |
| TGATGCTGCTGCTGTTGCCA+TGG | + | chr7.4:70867871-70867890 | MS.gene040318:CDS | 55.0% | |
| TGCACCTCCTTCAACTCCTG+TGG | + | chr7.4:70867649-70867668 | MS.gene040318:CDS | 55.0% | |
| TGCCGAGATACTGGATCCCT+TGG | + | chr7.4:70867535-70867554 | MS.gene040318:CDS | 55.0% | |
| TGGGCATCATCGGCATTGTG+TGG | - | chr7.4:70867752-70867771 | None:intergenic | 55.0% | |
| ! | ACAGGAGTTGAAGGAGGTGC+AGG | - | chr7.4:70867650-70867669 | None:intergenic | 55.0% |
| ! | CACTTTTCCCAACTGCCAGC+CGG | - | chr7.4:70868280-70868299 | None:intergenic | 55.0% |
| CATGGGTGCAGGTGGGAATG+TGG | + | chr7.4:70867910-70867929 | MS.gene040318:CDS | 60.0% | |
| CCGAGCTAACGGTTCGTGAG+AGG | + | chr7.4:70867480-70867499 | MS.gene040318:CDS | 60.0% | |
| CGGACAGGGGCTGTTCTACA+TGG | + | chr7.4:70867436-70867455 | MS.gene040318:CDS | 60.0% | |
| GAAATGCCGCCGGAGGAAGA+TGG | - | chr7.4:70868223-70868242 | None:intergenic | 60.0% | |
| GAGCACTTCCACCAGCCGTT+AGG | + | chr7.4:70867389-70867408 | MS.gene040318:CDS | 60.0% | |
| GGACAGAGGCCATCTTCCTC+CGG | + | chr7.4:70868211-70868230 | MS.gene040318:CDS | 60.0% | |
| TCCTCCGGCGGCATTTCTCA+GGG | + | chr7.4:70868226-70868245 | MS.gene040318:CDS | 60.0% | |
| TGTGGCAGAACCGGATCCAG+CGG | + | chr7.4:70867667-70867686 | MS.gene040318:CDS | 60.0% | |
| TTCCTCCGGCGGCATTTCTC+AGG | + | chr7.4:70868225-70868244 | MS.gene040318:CDS | 60.0% | |
| ! | GGAGTTGAAGGAGGTGCAGG+AGG | - | chr7.4:70867647-70867666 | None:intergenic | 60.0% |
| ACGGAGAACCGGCTGGCAGT+TGG | + | chr7.4:70868269-70868288 | MS.gene040318:CDS | 65.0% | |
| CAGAGGCCATCTTCCTCCGG+CGG | + | chr7.4:70868214-70868233 | MS.gene040318:CDS | 65.0% | |
| CCTCCGGCGGCATTTCTCAG+GGG | + | chr7.4:70868227-70868246 | MS.gene040318:CDS | 65.0% | |
| CGGAGAACCGGCTGGCAGTT+GGG | + | chr7.4:70868270-70868289 | MS.gene040318:CDS | 65.0% | |
| GCTGGATCCGGTTCTGCCAC+AGG | - | chr7.4:70867668-70867687 | None:intergenic | 65.0% | |
| CCCCTGAGAAATGCCGCCGG+AGG | - | chr7.4:70868230-70868249 | None:intergenic | 70.0% | |
| CCGCCCCTGAGAAATGCCGC+CGG | - | chr7.4:70868233-70868252 | None:intergenic | 70.0% | |
| CCGGCGGCATTTCTCAGGGG+CGG | + | chr7.4:70868230-70868249 | MS.gene040318:CDS | 70.0% | |
| CGGCATTTCTCAGGGGCGGG+TGG | + | chr7.4:70868234-70868253 | MS.gene040318:CDS | 70.0% | |
| CGGCGGCATTTCTCAGGGGC+GGG | + | chr7.4:70868231-70868250 | MS.gene040318:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.4 | gene | 70866499 | 70868367 | 70866499 | ID=MS.gene040318 |
| chr7.4 | mRNA | 70866499 | 70868367 | 70866499 | ID=MS.gene040318.t1;Parent=MS.gene040318 |
| chr7.4 | exon | 70866499 | 70866549 | 70866499 | ID=MS.gene040318.t1.exon1;Parent=MS.gene040318.t1 |
| chr7.4 | CDS | 70866499 | 70866549 | 70866499 | ID=cds.MS.gene040318.t1;Parent=MS.gene040318.t1 |
| chr7.4 | exon | 70867236 | 70868000 | 70867236 | ID=MS.gene040318.t1.exon2;Parent=MS.gene040318.t1 |
| chr7.4 | CDS | 70867236 | 70868000 | 70867236 | ID=cds.MS.gene040318.t1;Parent=MS.gene040318.t1 |
| chr7.4 | exon | 70868104 | 70868367 | 70868104 | ID=MS.gene040318.t1.exon3;Parent=MS.gene040318.t1 |
| chr7.4 | CDS | 70868104 | 70868367 | 70868104 | ID=cds.MS.gene040318.t1;Parent=MS.gene040318.t1 |
| Gene Sequence |
| Protein sequence |
