AlfalfaGEDB | MS.gene040325

M. sativa cultivar XinJiangDaYe / MS.gene040325

KEGG: -
GO: GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0097159 GO:1901363
PFAM: PF02362.24

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene040325.t1	PNX89523.1	40	95	56	1	7	101	2	95	6.20E-08	68.6

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene040325.t1	A0A2K3MFE8	40.0	95	56	1	7	101	2	95	4.5e-08	68.6

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene040325.t1	TF	B3

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Find 97 sgRNAs with CRISPR-Local

Find 263 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACATGTGTCTCCAACTG+GGG	0.599659	7.4:+70916251	None:intergenic
AAAACCGGATAAAGCTACAT+CGG	0.665649	7.4:-70915962	MS.gene040325:CDS
AAACATCCCGTTATCGTCAT+AGG	0.435778	7.4:+70916811	None:intergenic
AAATTTGCTCGGCGAGCATT+TGG	0.329497	7.4:-70916060	MS.gene040325:CDS
AACTGTCCTGCACGTGAGGC+AGG	0.503776	7.4:-70915848	MS.gene040325:CDS
AAGGAGGGTATTCAACATCG+CGG	0.764822	7.4:-70918810	MS.gene040325:CDS
AATACCGATGTAGCTTTATC+CGG	0.408209	7.4:+70915958	None:intergenic
AATCGTAGGTTTAGACCTAA+TGG	0.433227	7.4:+70916836	None:intergenic
AATGGATGTGGTAGATGCTG+AGG	0.688566	7.4:-70916288	MS.gene040325:CDS
AATTAGCCACGTTCTGAATC+TGG	0.296437	7.4:+70916378	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAACGTTCGTAAAAATACCA+TGG	+	chr7.4:70917666-70917685	None:intergenic	30.0%
AAATTGCAAAAAATTTGGGC+CGG	-	chr7.4:70917405-70917424	MS.gene040325:intron	30.0%
AACGTTCGTAAAAATACCAT+GGG	+	chr7.4:70917665-70917684	None:intergenic	30.0%
AGAAATTGCCCAATTTATAG+GGG	-	chr7.4:70916446-70916465	MS.gene040325:CDS	30.0%
AGTATCCAATCGATATTAAG+TGG	-	chr7.4:70918665-70918684	MS.gene040325:intron	30.0%
CAAAGTATATAAATGTACGC+AGG	+	chr7.4:70917962-70917981	None:intergenic	30.0%
CATCATTAATTGGATTTGAC+GGG	+	chr7.4:70918154-70918173	None:intergenic	30.0%
CCTTCAAAAAAGAGAAAAAC+TGG	+	chr7.4:70917483-70917502	None:intergenic	30.0%
GCATCATTAATTGGATTTGA+CGG	+	chr7.4:70918155-70918174	None:intergenic	30.0%
GTTGTAGATTCCCTTAAAAA+AGG	-	chr7.4:70916219-70916238	MS.gene040325:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7.4	gene	70915834	70918843	70915834	ID=MS.gene040325
chr7.4	mRNA	70915834	70918843	70915834	ID=MS.gene040325.t1;Parent=MS.gene040325
chr7.4	exon	70918796	70918843	70918796	ID=MS.gene040325.t1.exon1;Parent=MS.gene040325.t1
chr7.4	CDS	70918796	70918843	70918796	ID=cds.MS.gene040325.t1;Parent=MS.gene040325.t1
chr7.4	exon	70916714	70917029	70916714	ID=MS.gene040325.t1.exon2;Parent=MS.gene040325.t1
chr7.4	CDS	70916714	70917029	70916714	ID=cds.MS.gene040325.t1;Parent=MS.gene040325.t1
chr7.4	exon	70916214	70916554	70916214	ID=MS.gene040325.t1.exon3;Parent=MS.gene040325.t1
chr7.4	CDS	70916214	70916554	70916214	ID=cds.MS.gene040325.t1;Parent=MS.gene040325.t1
chr7.4	exon	70915834	70916094	70915834	ID=MS.gene040325.t1.exon4;Parent=MS.gene040325.t1
chr7.4	CDS	70915834	70916094	70915834	ID=cds.MS.gene040325.t1;Parent=MS.gene040325.t1

Gene Sequence

>MS.gene040325

ATGGTTTTCCAAAGGAGGGTATTCAACATCGCGGTCAACCCAAACCAGGTATGGTGCTCTAATCTTCAACAACCAATGATTCAAAATGCGATGCTAAAAAGTTCTTCAGAATGATTGTTTTTTTTGTTTCCCGATACACTTCCATATCTGGTGGATGTTGCATTGCATGCATTGATTCATCAGTGGCATAGTATATTGATGACTCTGATTATGTTATTTTTTATTTCCGTTTTTTTTTCTTCTTAAATACAGATTGTTCAATATTGTAGTTGTAGATTGCATGCATTGATTCATCAGTGGCTCAGTATATTGATGACTCTGATTATGTTATTTATTTTTTCTTTTTTTTATTTTGTTTCTTAAATACATATTGTCCAATGTTGTAGTTGTAGATTCCCTTAAAAAAGGGCAACCCGGTGCACTAGAGCTCCCGCATATGCAGGGTAAAAAAAAAAAACCATAATTTTGTTTCTCATACACTTCCATTCTTTGTATTTTGTTGTGTTGTGAGTGGCGGAGCCAGGATTTTTATGAAGCCCGGGCGAAAAAAAATTTGCAATACATTTATAGGGGTTTACATAAGAAATTGCAAGCAAATAATAAAAAATTTAAAGAAATTGCCCAATTTATAGGGGTTTATATAAGAAATTCAAGGGGATTTACCATAGTTTTAAAACTCGGCTCGGTCATCGACTCGGCAGAGGCACTGAGTCACTGAGTCGATGGTTGAACCATCGGGTCATTGGTTGAACCGCATGACAGAATCGGATGACTCGGTTAGATAACTCGGTGTTAAGATTAAATTTGTATAGGTATTTAATTAGATTAAATCGGATTGAACCGGTGACTCGATTACTCCAACAACTAAAATAATAATATATATATATATAAAATAAAAATAAATATCCAACAAACATAATTTAATAGACTAATTATTCATGCGATAAAAAAAAGCGAAGAGTAATTATTCATGAGCTTTAAATAAAATATTTGAGCTTTATAATTATATTTTTGTTAGGGAAGCTTTATAATTATATATGTCTATGATTTTGTCCGTTAATATTGTGAGTTATTTTTATAAAAAAAATCGATAGGTATTTGCCTTGTAAAGTATTAAACGTTAATTTTGTGAGGCATTTTAATCAACTAAAAAATAATAATTGATGGGTATTTGCATTGTACAGTATTCAATATTTTGACAATTATAATCTTATCCAAAAATTTGCTTAATATATTCTTATTAAAAGAATATTTAAAACAAAATGAACAAGCACTTCAGTGGTTAGGAAGTTGTTTCTTATTGGGTGGGTCACAAGTTCAACTCCCATCTGTGGCATTTTTTGTAACATGATTTAACTTAAAAGCAAAAAAAAAAAAAAAAAAGAGAAGAACCGGTTCAACCCATAACTCGGCCGAGTCACCGATTTTTACCGAGTTTGACCGGTTCTCGCCGAGCCAACTGCATGGCCGATCCGAAGGTATGCTCGAACCAGTCTACCCACCGGTTCCCGGTTCGACCGGTCCAACCGGCCGGTTCGAGCCGAGTTTCAAAACTATGGGATTTACATAAGAAATTGCAAAAAATTTGGGCCGGAGCCCGGGCGAGTGCCCGGGCTCGCCGGGCCTTAGAACAATGGTTATAATTACCAGTTTTTCTCTTTTTTGAAGGATTATTACTAGTTTTGTATTGCTCTTCTTTTTTGTATAATTTCTTCGAAACACACAACATTAAATAATAATACCCTCGCCTTTGCTTATAGATTTTCAATACTTTTGGTTGTAAACATACTGTTGTTGTTGTTTGTATTCTGTAGCTTACGGCTCGTGTCCCATGGTATTTTTACGAACGTTTCAAAGGTCAAATAGAGCATAGAGTTTGGTTTCAGGATACCAGAGGGTCTAGGTTTGGAGTATGTTACGGAGAGATCAATGGCGGTGGTTGCTTCTATTCAGGTCTTCAGAACCTGCTTGATCATTATGAGCAACCATTAGGTCTAAACCTACGATTGACCTATGACGATAACGGGATGTTTCATATGCTTCCATTCACTCTTGACATGGATGAGGTAACTAATCGTCAATTGAGGAACTATGACCATAGCTCAAGGTTGCATGTCAATGAGTTCCTGCGTACATTTATATACTTTGATTCCGACTCATCTTCGTCTTCGTCTTCGTCTTCGTCATCTGATGATGGCCAATTTCAAATTAATGCTGCTGCTATTGTGGGTTCTGGTGTTGCTGTTGGTGGTGATAATGGTGCCGTTGCTGCTGCTGATTTATTTCCAGCAGTTCCACCGGGTTTCGAAGTAGGAGGCCCGTCAAATCCAATTAATGATGCGCACAACTCTCCTCCCATTCCTGATGATGGTGATATGGTAGTTGTTCCTGACCCAGTACCAGTGGTGGAAGAACAAAATCCACAAACTGCCGCTGCAGTAGCCCAGATTCAGAACGTGGCTAATTTCTGGGATGATGATGAGGAACCTGCTTTCGATATTGGTGATAATGAGGAGGCTGATATGGATGTCGAAATGGATGTGGTAGATGCTGAGGATGCACATGGCAATCCCCAGTTGGAGACACATGTTTTAACGCTTGCTGCGTACATGGTGAAATGCAGCAACATGGTGAGTTACTTTGAAAAAATAAAAAAAAAACATATCCACGCTTTATACAGTTATTTATTGTGGTTTGGCAAGTGTGTGACTGTTGACATGAATTAATTATTGTTATCTGTCAACTGCAGCTTGTACCAGCAAAATTTGCTCGGCGAGCATTTGGGAATACAAGACCAACCTTCATCACGATCCGAGATGAGTTCCACCGTGAGTATCCAATCGATATTAAGTGGAATGAAAAACCGGATAAAGCTACATCGGTATTTTTCAGGGGCGGTTGGGGTGAATTCGTTAGAGAGAACAGATTTGTGGAAGGCACAAGGGTGTTGCTCACTTTAAACAAGACTAACCCAACTGTCCTGCACGTGAGGCAGGTCGTTATGGTGTAA

Protein sequence

>MS.gene040325.t1

MVFQRRVFNIAVNPNQLTARVPWYFYERFKGQIEHRVWFQDTRGSRFGVCYGEINGGGCFYSGLQNLLDHYEQPLGLNLRLTYDDNGMFHMLPFTLDMDEVTNRQLRNYDHSSRLHVNEFLPVPPGFEVGGPSNPINDAHNSPPIPDDGDMVVVPDPVPVVEEQNPQTAAAVAQIQNVANFWDDDEEPAFDIGDNEEADMDVEMDVVDAEDAHGNPQLETHVLTLAAYMVKCSNMLVPAKFARRAFGNTRPTFITIRDEFHREYPIDIKWNEKPDKATSVFFRGGWGEFVRENRFVEGTRVLLTLNKTNPTVLHVRQVVMV