Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene04033.t1 | XP_013460192.1 | 95.9 | 389 | 15 | 1 | 1 | 388 | 1 | 389 | 5.60E-205 | 723.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene04033.t1 | G7ZYI5 | 95.9 | 389 | 15 | 1 | 1 | 388 | 1 | 389 | 4.0e-205 | 723.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene04033.t1 | TF | C2H2 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene04033.t1 | MTR_3g463270 | 97.172 | 389 | 10 | 1 | 1 | 388 | 1 | 389 | 0.0 | 785 |
| MS.gene04033.t1 | MTR_3g072920 | 49.798 | 247 | 109 | 10 | 146 | 386 | 212 | 449 | 2.45e-64 | 212 |
| MS.gene04033.t1 | MTR_1g024980 | 45.200 | 250 | 111 | 9 | 147 | 388 | 170 | 401 | 6.16e-59 | 197 |
| MS.gene04033.t1 | MTR_4g081420 | 45.000 | 240 | 115 | 8 | 153 | 385 | 205 | 434 | 1.21e-56 | 192 |
| MS.gene04033.t1 | MTR_2g010860 | 35.849 | 265 | 151 | 6 | 132 | 386 | 120 | 375 | 5.66e-43 | 154 |
| MS.gene04033.t1 | MTR_2g010870 | 36.496 | 274 | 144 | 8 | 133 | 386 | 91 | 354 | 1.88e-42 | 152 |
| MS.gene04033.t1 | MTR_5g012220 | 39.013 | 223 | 90 | 8 | 175 | 388 | 105 | 290 | 7.27e-32 | 122 |
| MS.gene04033.t1 | MTR_4g101450 | 38.028 | 213 | 95 | 7 | 178 | 388 | 98 | 275 | 1.09e-31 | 121 |
| MS.gene04033.t1 | MTR_5g094440 | 29.741 | 232 | 138 | 7 | 159 | 387 | 61 | 270 | 1.74e-25 | 104 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene04033.t1 | AT2G29660 | 55.319 | 329 | 122 | 8 | 73 | 388 | 57 | 373 | 4.50e-112 | 332 |
| MS.gene04033.t1 | AT4G27240 | 41.786 | 280 | 135 | 9 | 115 | 385 | 168 | 428 | 1.61e-57 | 194 |
| MS.gene04033.t1 | AT5G54630 | 42.379 | 269 | 120 | 10 | 133 | 385 | 220 | 469 | 1.71e-57 | 195 |
| MS.gene04033.t1 | AT1G75710 | 42.754 | 276 | 114 | 10 | 144 | 388 | 197 | 459 | 5.07e-57 | 193 |
| MS.gene04033.t1 | AT4G27240 | 41.270 | 252 | 124 | 7 | 115 | 357 | 168 | 404 | 5.57e-49 | 171 |
| MS.gene04033.t1 | AT1G11490 | 35.628 | 247 | 140 | 8 | 150 | 386 | 126 | 363 | 3.98e-35 | 133 |
| MS.gene04033.t1 | AT1G11490 | 35.628 | 247 | 140 | 8 | 150 | 386 | 126 | 363 | 3.98e-35 | 133 |
| MS.gene04033.t1 | AT4G22560 | 34.025 | 241 | 110 | 9 | 153 | 388 | 68 | 264 | 1.09e-28 | 113 |
| MS.gene04033.t1 | AT1G62520 | 33.645 | 214 | 108 | 6 | 176 | 388 | 100 | 280 | 4.27e-24 | 100 |
| MS.gene04033.t1 | AT4G12450 | 30.357 | 280 | 128 | 9 | 118 | 388 | 56 | 277 | 1.54e-23 | 99.4 |
Find 105 sgRNAs with CRISPR-Local
Find 130 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTCGAGAAGGTTCGGTTTC+TGG | 0.131058 | 3.3:-50657619 | None:intergenic |
| GTGGAAATTCCATCTAATTT+TGG | 0.188572 | 3.3:-50658007 | None:intergenic |
| ATAAAACTCTTTCTTCTTCT+TGG | 0.198943 | 3.3:+50657336 | MS.gene04033:CDS |
| TTTGGGAAGGTGTTTGTTTC+GGG | 0.206736 | 3.3:-50657731 | None:intergenic |
| TTCAATATTCGGTGTATGTT+TGG | 0.246771 | 3.3:-50657749 | None:intergenic |
| ATTTGTGGAATTATTAAATC+AGG | 0.276288 | 3.3:+50657977 | MS.gene04033:CDS |
| GTTTGGGAAGGTGTTTGTTT+CGG | 0.289642 | 3.3:-50657732 | None:intergenic |
| GGTGAAGAGGGTTGTGATAA+AGG | 0.305338 | 3.3:-50657290 | None:intergenic |
| TCGCGAAACGGTGAAGATTA+AGG | 0.339700 | 3.3:+50657814 | MS.gene04033:CDS |
| TGATGATTGGGTGGTGGGAG+TGG | 0.349559 | 3.3:-50657408 | None:intergenic |
| TTATGTGAGTTGGGACATAA+TGG | 0.359107 | 3.3:+50657920 | MS.gene04033:CDS |
| TGTTATGGATCTTCAATATT+CGG | 0.359915 | 3.3:-50657760 | None:intergenic |
| CACGCTGTATCGGAGCTTAT+CGG | 0.371706 | 3.3:+50657659 | MS.gene04033:CDS |
| TGAGGTGATGATTGGGTGGT+GGG | 0.378568 | 3.3:-50657413 | None:intergenic |
| CACACAATCACTTATCTCAT+TGG | 0.390501 | 3.3:+50657466 | MS.gene04033:CDS |
| GTGTTATCGCGGGTCGGGTT+GGG | 0.390583 | 3.3:+50658125 | MS.gene04033:CDS |
| TCAATATTCGGTGTATGTTT+GGG | 0.391412 | 3.3:-50657748 | None:intergenic |
| CGTGGTGGATCTTGGTAACT+CGG | 0.398625 | 3.3:-50657500 | None:intergenic |
| GGGTCGGGTTGGGTCAGATT+TGG | 0.399327 | 3.3:+50658135 | MS.gene04033:CDS |
| CGTGCAAATCATCTTCAAAT+CGG | 0.400591 | 3.3:+50657703 | MS.gene04033:CDS |
| TATGTGAGTTGGGACATAAT+GGG | 0.407982 | 3.3:+50657921 | MS.gene04033:CDS |
| GTTTCTGCCGTGGTGGATCT+TGG | 0.409684 | 3.3:-50657508 | None:intergenic |
| CGTGTTATCGCGGGTCGGGT+TGG | 0.422970 | 3.3:+50658124 | MS.gene04033:CDS |
| TCCGGCGGTCGCGGCGGCGA+CGG | 0.425018 | 3.3:-50657219 | None:intergenic |
| AACTCCCGCTCGATGTCATC+AGG | 0.433180 | 3.3:-50658064 | None:intergenic |
| CTCCGATACAGCGTGGTTTG+CGG | 0.437651 | 3.3:-50657651 | None:intergenic |
| TGCTTTCACGGTGGTTGTAA+TGG | 0.445907 | 3.3:-50657441 | None:intergenic |
| TTGAGGTGATGATTGGGTGG+TGG | 0.448432 | 3.3:-50657414 | None:intergenic |
| TGGTGGATTGAGGTGATGAT+TGG | 0.454282 | 3.3:-50657421 | None:intergenic |
| TTGTCGTGTTATCGCGGGTC+GGG | 0.457674 | 3.3:+50658120 | MS.gene04033:CDS |
| TTAAGTTCATGAACGTCAAA+CGG | 0.460337 | 3.3:+50658086 | MS.gene04033:CDS |
| AGGGAAGAAGAGATTGTTAT+CGG | 0.462139 | 3.3:-50657552 | None:intergenic |
| TTTCCACGCTGTCGACTAGC+TGG | 0.463808 | 3.3:+50658023 | MS.gene04033:CDS |
| GGATCTTGGTAACTCGGGTC+GGG | 0.464131 | 3.3:-50657494 | None:intergenic |
| TGGATCTTGGTAACTCGGGT+CGG | 0.464149 | 3.3:-50657495 | None:intergenic |
| ATCTCGCCGCACGCAGTGCA+TGG | 0.466339 | 3.3:-50657593 | None:intergenic |
| TGATTGGGTGGTGGGAGTGG+TGG | 0.468876 | 3.3:-50657405 | None:intergenic |
| TTTGATTCGGTGATGGGGCG+CGG | 0.470340 | 3.3:+50658187 | MS.gene04033:CDS |
| TTGATCCTCATTGTCCACCT+TGG | 0.471213 | 3.3:+50657182 | MS.gene04033:CDS |
| CTCGTTTGTCGTGTTATCGC+GGG | 0.476759 | 3.3:+50658115 | MS.gene04033:CDS |
| TAAGTTCATGAACGTCAAAC+GGG | 0.478847 | 3.3:+50658087 | MS.gene04033:CDS |
| ACCGTCGCCGCCGCGACCGC+CGG | 0.483078 | 3.3:+50657218 | MS.gene04033:CDS |
| TTTGTGGAATTATTAAATCA+GGG | 0.487989 | 3.3:+50657978 | MS.gene04033:CDS |
| GGTGGATTGAGGTGATGATT+GGG | 0.493956 | 3.3:-50657420 | None:intergenic |
| GCTCGTTTGTCGTGTTATCG+CGG | 0.495918 | 3.3:+50658114 | MS.gene04033:CDS |
| TGATTGTGTGGATGCTTTCA+CGG | 0.502390 | 3.3:-50657453 | None:intergenic |
| TCTTTGATGGTAATAATTGA+CGG | 0.507796 | 3.3:-50657253 | None:intergenic |
| ATGTGAGTTGGGACATAATG+GGG | 0.510178 | 3.3:+50657922 | MS.gene04033:CDS |
| GTGCAAATCATCTTCAAATC+GGG | 0.511628 | 3.3:+50657704 | MS.gene04033:CDS |
| ATACAGCGTGGTTTGCGGAT+TGG | 0.514347 | 3.3:-50657646 | None:intergenic |
| AAGACTTGATGAGGAGGAGT+TGG | 0.519786 | 3.3:+50658228 | MS.gene04033:CDS |
| TTAGGGTGAGAAGGTGAAGA+GGG | 0.530433 | 3.3:-50657302 | None:intergenic |
| ATCCGCAAACCACGCTGTAT+CGG | 0.538075 | 3.3:+50657649 | MS.gene04033:CDS |
| TCTCGCCGCACGCAGTGCAT+GGG | 0.550082 | 3.3:-50657592 | None:intergenic |
| GGAAGATGTCGTTACGGAGA+GGG | 0.551121 | 3.3:-50657571 | None:intergenic |
| GTGATGGGGCGCGGCGAGAG+TGG | 0.551447 | 3.3:+50658196 | MS.gene04033:CDS |
| GACGAACGCTGTATCGCTGA+CGG | 0.551679 | 3.3:+50657863 | MS.gene04033:CDS |
| GGAGCTTATCGGATCCGACC+CGG | 0.553645 | 3.3:+50657670 | MS.gene04033:CDS |
| GCGGCGCGTGACACCACGCG+CGG | 0.554048 | 3.3:-50657837 | None:intergenic |
| TTTGTCGTGTTATCGCGGGT+CGG | 0.555072 | 3.3:+50658119 | MS.gene04033:CDS |
| TGCATGGGAAGATGTCGTTA+CGG | 0.561690 | 3.3:-50657577 | None:intergenic |
| CGGTGAACATGAAGCATCCA+AGG | 0.563804 | 3.3:-50657199 | None:intergenic |
| GTCAGATTTGGACGGTGAGG+TGG | 0.565091 | 3.3:+50658147 | MS.gene04033:CDS |
| CACGATGTTATGACCCGGGT+CGG | 0.569362 | 3.3:-50657684 | None:intergenic |
| CACCGAATCAAAACCTCCAT+CGG | 0.572913 | 3.3:-50658176 | None:intergenic |
| GGATTGAGGTGATGATTGGG+TGG | 0.579372 | 3.3:-50657417 | None:intergenic |
| TTTAGGGTGAGAAGGTGAAG+AGG | 0.580588 | 3.3:-50657303 | None:intergenic |
| GGGAAGATGTCGTTACGGAG+AGG | 0.581531 | 3.3:-50657572 | None:intergenic |
| ACGAACGCTGTATCGCTGAC+GGG | 0.581600 | 3.3:+50657864 | MS.gene04033:CDS |
| TATTCGGTGTATGTTTGGGA+AGG | 0.587120 | 3.3:-50657744 | None:intergenic |
| ATCTTCCCATGCACTGCGTG+CGG | 0.588283 | 3.3:+50657587 | MS.gene04033:CDS |
| AAGCAAGGAAGAACAGCCCT+AGG | 0.591167 | 3.3:-50658262 | None:intergenic |
| GATTCTGATTGTTTCTGCCG+TGG | 0.593553 | 3.3:-50657518 | None:intergenic |
| TCTGATTGTTTCTGCCGTGG+TGG | 0.595100 | 3.3:-50657515 | None:intergenic |
| ATTTGCACGATGTTATGACC+CGG | 0.595622 | 3.3:-50657689 | None:intergenic |
| GTGGTGGATCTTGGTAACTC+GGG | 0.600808 | 3.3:-50657499 | None:intergenic |
| CCACGCTGTCGACTAGCTGG+AGG | 0.602472 | 3.3:+50658026 | MS.gene04033:CDS |
| CACGCTGTCGACTAGCTGGA+GGG | 0.602474 | 3.3:+50658027 | MS.gene04033:CDS |
| AGCATCCAAGGTGGACAATG+AGG | 0.604755 | 3.3:-50657187 | None:intergenic |
| CTATACACAATCACAAAGCA+AGG | 0.609481 | 3.3:-50658277 | None:intergenic |
| ATTCGAAGAATATCGCGAAA+CGG | 0.611767 | 3.3:+50657802 | MS.gene04033:CDS |
| AATTCCTGATGACATCGAGC+GGG | 0.613181 | 3.3:+50658060 | MS.gene04033:CDS |
| GAGCTTATCGGATCCGACCC+GGG | 0.613363 | 3.3:+50657671 | MS.gene04033:CDS |
| GATATTCTTCGAATTTCGAG+AGG | 0.614943 | 3.3:-50657793 | None:intergenic |
| CAGCGATACAGCGTTCGTCA+CGG | 0.619651 | 3.3:-50657859 | None:intergenic |
| CAATGAGATAAGTGATTGTG+TGG | 0.625536 | 3.3:-50657465 | None:intergenic |
| AAATCATCTTCAAATCGGGT+TGG | 0.627452 | 3.3:+50657708 | MS.gene04033:CDS |
| GGTGAGGTGGATAAAACCGA+TGG | 0.631181 | 3.3:+50658160 | MS.gene04033:CDS |
| GTGAAGATTAAGGCCGCGCG+TGG | 0.639038 | 3.3:+50657824 | MS.gene04033:CDS |
| TGTTTACACAAGACTTGATG+AGG | 0.640225 | 3.3:+50658219 | MS.gene04033:CDS |
| CGGGTTGGGTCAGATTTGGA+CGG | 0.643201 | 3.3:+50658139 | MS.gene04033:CDS |
| TTTCACGGTGGTTGTAATGG+TGG | 0.646848 | 3.3:-50657438 | None:intergenic |
| CAATTCCTGATGACATCGAG+CGG | 0.650943 | 3.3:+50658059 | MS.gene04033:CDS |
| TTTGCACGATGTTATGACCC+GGG | 0.659427 | 3.3:-50657688 | None:intergenic |
| TGGGTCAGATTTGGACGGTG+AGG | 0.662364 | 3.3:+50658144 | MS.gene04033:CDS |
| GAGGTGGATAAAACCGATGG+AGG | 0.663661 | 3.3:+50658163 | MS.gene04033:CDS |
| TTACACAAGACTTGATGAGG+AGG | 0.695990 | 3.3:+50658222 | MS.gene04033:CDS |
| TTGTGTGGATGCTTTCACGG+TGG | 0.700932 | 3.3:-50657450 | None:intergenic |
| GTGGTTGTAATGGTGGATTG+AGG | 0.701310 | 3.3:-50657431 | None:intergenic |
| TGAACATGAAGCATCCAAGG+TGG | 0.710959 | 3.3:-50657196 | None:intergenic |
| CGATACAGCGTTCGTCACGG+CGG | 0.713613 | 3.3:-50657856 | None:intergenic |
| CGAGTTACCAAGATCCACCA+CGG | 0.715147 | 3.3:+50657501 | MS.gene04033:CDS |
| GAAGAAGAGATTGTTATCGG+CGG | 0.718444 | 3.3:-50657549 | None:intergenic |
| CCTCCAGCTAGTCGACAGCG+TGG | 0.733625 | 3.3:-50658026 | None:intergenic |
| CGATAAGCTCCGATACAGCG+TGG | 0.733944 | 3.3:-50657658 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTTGTGGAATTATTAAATC+AGG | + | chr3.3:50657977-50657996 | MS.gene04033:CDS | 20.0% |
| !! | TTTGTGGAATTATTAAATCA+GGG | + | chr3.3:50657978-50657997 | MS.gene04033:CDS | 20.0% |
| !!! | TTTTATGGGTTTTGAATTTA+GGG | - | chr3.3:50657322-50657341 | None:intergenic | 20.0% |
| ! | ATAAAACTCTTTCTTCTTCT+TGG | + | chr3.3:50657336-50657355 | MS.gene04033:CDS | 25.0% |
| ! | TGTTATGGATCTTCAATATT+CGG | - | chr3.3:50657763-50657782 | None:intergenic | 25.0% |
| !! | AAGAAGAAGAAAGAGTTTTA+TGG | - | chr3.3:50657337-50657356 | None:intergenic | 25.0% |
| !! | CAGCAATTTTGTAATATTTG+TGG | + | chr3.3:50657962-50657981 | MS.gene04033:CDS | 25.0% |
| !! | TCTTTGATGGTAATAATTGA+CGG | - | chr3.3:50657256-50657275 | None:intergenic | 25.0% |
| !!! | AGAAGAAGAAAGAGTTTTAT+GGG | - | chr3.3:50657336-50657355 | None:intergenic | 25.0% |
| !!! | GTTTTATGGGTTTTGAATTT+AGG | - | chr3.3:50657323-50657342 | None:intergenic | 25.0% |
| !!! | TCAACTTTTTTATGTGAGTT+GGG | + | chr3.3:50657911-50657930 | MS.gene04033:CDS | 25.0% |
| TTAAGTTCATGAACGTCAAA+CGG | + | chr3.3:50658086-50658105 | MS.gene04033:CDS | 30.0% | |
| ! | GAGATTTTTCGTTTCTTTGA+TGG | - | chr3.3:50657269-50657288 | None:intergenic | 30.0% |
| ! | GTGGAAATTCCATCTAATTT+TGG | - | chr3.3:50658010-50658029 | None:intergenic | 30.0% |
| !! | TCAATATTCGGTGTATGTTT+GGG | - | chr3.3:50657751-50657770 | None:intergenic | 30.0% |
| !! | TTCAATATTCGGTGTATGTT+TGG | - | chr3.3:50657752-50657771 | None:intergenic | 30.0% |
| !!! | AGTTGGTTGTTTTTAATCCT+AGG | + | chr3.3:50658245-50658264 | MS.gene04033:CDS | 30.0% |
| !!! | CTCAACTTTTTTATGTGAGT+TGG | + | chr3.3:50657910-50657929 | MS.gene04033:CDS | 30.0% |
| !!! | GTTGGTTGTTTTTAATCCTA+GGG | + | chr3.3:50658246-50658265 | MS.gene04033:CDS | 30.0% |
| AAATCATCTTCAAATCGGGT+TGG | + | chr3.3:50657708-50657727 | MS.gene04033:CDS | 35.0% | |
| AGGGAAGAAGAGATTGTTAT+CGG | - | chr3.3:50657555-50657574 | None:intergenic | 35.0% | |
| ATTCGAAGAATATCGCGAAA+CGG | + | chr3.3:50657802-50657821 | MS.gene04033:CDS | 35.0% | |
| CAATGAGATAAGTGATTGTG+TGG | - | chr3.3:50657468-50657487 | None:intergenic | 35.0% | |
| CACACAATCACTTATCTCAT+TGG | + | chr3.3:50657466-50657485 | MS.gene04033:CDS | 35.0% | |
| CGTGCAAATCATCTTCAAAT+CGG | + | chr3.3:50657703-50657722 | MS.gene04033:CDS | 35.0% | |
| CTATACACAATCACAAAGCA+AGG | - | chr3.3:50658280-50658299 | None:intergenic | 35.0% | |
| GATATTCTTCGAATTTCGAG+AGG | - | chr3.3:50657796-50657815 | None:intergenic | 35.0% | |
| GTGCAAATCATCTTCAAATC+GGG | + | chr3.3:50657704-50657723 | MS.gene04033:CDS | 35.0% | |
| TAAGTTCATGAACGTCAAAC+GGG | + | chr3.3:50658087-50658106 | MS.gene04033:CDS | 35.0% | |
| TGTTTACACAAGACTTGATG+AGG | + | chr3.3:50658219-50658238 | MS.gene04033:CDS | 35.0% | |
| ! | TATGTGAGTTGGGACATAAT+GGG | + | chr3.3:50657921-50657940 | MS.gene04033:CDS | 35.0% |
| ! | TGCATGAATTTTTGCAGAAG+AGG | - | chr3.3:50657376-50657395 | None:intergenic | 35.0% |
| ! | TTATGTGAGTTGGGACATAA+TGG | + | chr3.3:50657920-50657939 | MS.gene04033:CDS | 35.0% |
| !! | GTTTTGAATTTAGGGTGAGA+AGG | - | chr3.3:50657314-50657333 | None:intergenic | 35.0% |
| !!! | TTGACGGTTATCTTGTTTTC+CGG | - | chr3.3:50657240-50657259 | None:intergenic | 35.0% |
| ATTTGCACGATGTTATGACC+CGG | - | chr3.3:50657692-50657711 | None:intergenic | 40.0% | |
| GAAGAAGAGATTGTTATCGG+CGG | - | chr3.3:50657552-50657571 | None:intergenic | 40.0% | |
| TGATTGTGTGGATGCTTTCA+CGG | - | chr3.3:50657456-50657475 | None:intergenic | 40.0% | |
| TTACACAAGACTTGATGAGG+AGG | + | chr3.3:50658222-50658241 | MS.gene04033:CDS | 40.0% | |
| ! | ATGTGAGTTGGGACATAATG+GGG | + | chr3.3:50657922-50657941 | MS.gene04033:CDS | 40.0% |
| ! | CGAATTTCGAGAGGATTTTC+TGG | - | chr3.3:50657787-50657806 | None:intergenic | 40.0% |
| ! | GGGTTTTCGCCAAAATTAGA+TGG | + | chr3.3:50657998-50658017 | MS.gene04033:CDS | 40.0% |
| !! | GTTTGGGAAGGTGTTTGTTT+CGG | - | chr3.3:50657735-50657754 | None:intergenic | 40.0% |
| !! | TATTCGGTGTATGTTTGGGA+AGG | - | chr3.3:50657747-50657766 | None:intergenic | 40.0% |
| !! | TGGTGATTTTCGAGAAGGTT+CGG | - | chr3.3:50657629-50657648 | None:intergenic | 40.0% |
| !! | TTTGGGAAGGTGTTTGTTTC+GGG | - | chr3.3:50657734-50657753 | None:intergenic | 40.0% |
| !!! | AACCGATGGAGGTTTTGATT+CGG | + | chr3.3:50658174-50658193 | MS.gene04033:CDS | 40.0% |
| !!! | AGAGGATTTTCTGGCTGTTA+TGG | - | chr3.3:50657778-50657797 | None:intergenic | 40.0% |
| AAGACTTGATGAGGAGGAGT+TGG | + | chr3.3:50658228-50658247 | MS.gene04033:CDS | 45.0% | |
| AATTCCTGATGACATCGAGC+GGG | + | chr3.3:50658060-50658079 | MS.gene04033:CDS | 45.0% | |
| CAATTCCTGATGACATCGAG+CGG | + | chr3.3:50658059-50658078 | MS.gene04033:CDS | 45.0% | |
| CACCGAATCAAAACCTCCAT+CGG | - | chr3.3:50658179-50658198 | None:intergenic | 45.0% | |
| GGTGAAGAGGGTTGTGATAA+AGG | - | chr3.3:50657293-50657312 | None:intergenic | 45.0% | |
| TCGCGAAACGGTGAAGATTA+AGG | + | chr3.3:50657814-50657833 | MS.gene04033:CDS | 45.0% | |
| TGCATGGGAAGATGTCGTTA+CGG | - | chr3.3:50657580-50657599 | None:intergenic | 45.0% | |
| TGCTTTCACGGTGGTTGTAA+TGG | - | chr3.3:50657444-50657463 | None:intergenic | 45.0% | |
| TTAGGGTGAGAAGGTGAAGA+GGG | - | chr3.3:50657305-50657324 | None:intergenic | 45.0% | |
| TTGATCCTCATTGTCCACCT+TGG | + | chr3.3:50657182-50657201 | MS.gene04033:CDS | 45.0% | |
| TTTCACGGTGGTTGTAATGG+TGG | - | chr3.3:50657441-50657460 | None:intergenic | 45.0% | |
| TTTGCACGATGTTATGACCC+GGG | - | chr3.3:50657691-50657710 | None:intergenic | 45.0% | |
| ! | TGAACATGAAGCATCCAAGG+TGG | - | chr3.3:50657199-50657218 | None:intergenic | 45.0% |
| ! | TTTAGGGTGAGAAGGTGAAG+AGG | - | chr3.3:50657306-50657325 | None:intergenic | 45.0% |
| ! | TTTCGAGAAGGTTCGGTTTC+TGG | - | chr3.3:50657622-50657641 | None:intergenic | 45.0% |
| !! | GATTCTGATTGTTTCTGCCG+TGG | - | chr3.3:50657521-50657540 | None:intergenic | 45.0% |
| !! | GGTGGATTGAGGTGATGATT+GGG | - | chr3.3:50657423-50657442 | None:intergenic | 45.0% |
| !! | GTGGTTGTAATGGTGGATTG+AGG | - | chr3.3:50657434-50657453 | None:intergenic | 45.0% |
| !! | TGGTGGATTGAGGTGATGAT+TGG | - | chr3.3:50657424-50657443 | None:intergenic | 45.0% |
| !!! | ACGGTTATCTTGTTTTCCGG+CGG | - | chr3.3:50657237-50657256 | None:intergenic | 45.0% |
| !!! | CGGATTGGTGATTTTCGAGA+AGG | - | chr3.3:50657634-50657653 | None:intergenic | 45.0% |
| !!! | GAGGTTTTGATTCGGTGATG+GGG | + | chr3.3:50658182-50658201 | MS.gene04033:CDS | 45.0% |
| !!! | GGAGGTTTTGATTCGGTGAT+GGG | + | chr3.3:50658181-50658200 | MS.gene04033:CDS | 45.0% |
| !!! | TGGAGGTTTTGATTCGGTGA+TGG | + | chr3.3:50658180-50658199 | MS.gene04033:CDS | 45.0% |
| AAGCAAGGAAGAACAGCCCT+AGG | - | chr3.3:50658265-50658284 | None:intergenic | 50.0% | |
| AGCATCCAAGGTGGACAATG+AGG | - | chr3.3:50657190-50657209 | None:intergenic | 50.0% | |
| ATCCGCAAACCACGCTGTAT+CGG | + | chr3.3:50657649-50657668 | MS.gene04033:CDS | 50.0% | |
| CACGCTGTATCGGAGCTTAT+CGG | + | chr3.3:50657659-50657678 | MS.gene04033:CDS | 50.0% | |
| CGAGTTACCAAGATCCACCA+CGG | + | chr3.3:50657501-50657520 | MS.gene04033:CDS | 50.0% | |
| CTCGTTTGTCGTGTTATCGC+GGG | + | chr3.3:50658115-50658134 | MS.gene04033:CDS | 50.0% | |
| GAGGTGGATAAAACCGATGG+AGG | + | chr3.3:50658163-50658182 | MS.gene04033:CDS | 50.0% | |
| GCTCGTTTGTCGTGTTATCG+CGG | + | chr3.3:50658114-50658133 | MS.gene04033:CDS | 50.0% | |
| GGAAGATGTCGTTACGGAGA+GGG | - | chr3.3:50657574-50657593 | None:intergenic | 50.0% | |
| GGATTGAGGTGATGATTGGG+TGG | - | chr3.3:50657420-50657439 | None:intergenic | 50.0% | |
| GGTGAGGTGGATAAAACCGA+TGG | + | chr3.3:50658160-50658179 | MS.gene04033:CDS | 50.0% | |
| TGAGGTGATGATTGGGTGGT+GGG | - | chr3.3:50657416-50657435 | None:intergenic | 50.0% | |
| TTGAGGTGATGATTGGGTGG+TGG | - | chr3.3:50657417-50657436 | None:intergenic | 50.0% | |
| TTGTGTGGATGCTTTCACGG+TGG | - | chr3.3:50657453-50657472 | None:intergenic | 50.0% | |
| TTTGTCGTGTTATCGCGGGT+CGG | + | chr3.3:50658119-50658138 | MS.gene04033:CDS | 50.0% | |
| ! | ATACAGCGTGGTTTGCGGAT+TGG | - | chr3.3:50657649-50657668 | None:intergenic | 50.0% |
| ! | CGGTGAACATGAAGCATCCA+AGG | - | chr3.3:50657202-50657221 | None:intergenic | 50.0% |
| ! | TGGATCTTGGTAACTCGGGT+CGG | - | chr3.3:50657498-50657517 | None:intergenic | 50.0% |
| !! | CGTGGTGGATCTTGGTAACT+CGG | - | chr3.3:50657503-50657522 | None:intergenic | 50.0% |
| !! | GTGGTGGATCTTGGTAACTC+GGG | - | chr3.3:50657502-50657521 | None:intergenic | 50.0% |
| !! | TCTGATTGTTTCTGCCGTGG+TGG | - | chr3.3:50657518-50657537 | None:intergenic | 50.0% |
| AACTCCCGCTCGATGTCATC+AGG | - | chr3.3:50658067-50658086 | None:intergenic | 55.0% | |
| ACGAACGCTGTATCGCTGAC+GGG | + | chr3.3:50657864-50657883 | MS.gene04033:CDS | 55.0% | |
| ATCTTCCCATGCACTGCGTG+CGG | + | chr3.3:50657587-50657606 | MS.gene04033:CDS | 55.0% | |
| CACGATGTTATGACCCGGGT+CGG | - | chr3.3:50657687-50657706 | None:intergenic | 55.0% | |
| CAGCGATACAGCGTTCGTCA+CGG | - | chr3.3:50657862-50657881 | None:intergenic | 55.0% | |
| CGATAAGCTCCGATACAGCG+TGG | - | chr3.3:50657661-50657680 | None:intergenic | 55.0% | |
| CTCCGATACAGCGTGGTTTG+CGG | - | chr3.3:50657654-50657673 | None:intergenic | 55.0% | |
| GACGAACGCTGTATCGCTGA+CGG | + | chr3.3:50657863-50657882 | MS.gene04033:CDS | 55.0% | |
| GGGAAGATGTCGTTACGGAG+AGG | - | chr3.3:50657575-50657594 | None:intergenic | 55.0% | |
| GTCAGATTTGGACGGTGAGG+TGG | + | chr3.3:50658147-50658166 | MS.gene04033:CDS | 55.0% | |
| TGGGTCAGATTTGGACGGTG+AGG | + | chr3.3:50658144-50658163 | MS.gene04033:CDS | 55.0% | |
| TTGTCGTGTTATCGCGGGTC+GGG | + | chr3.3:50658120-50658139 | MS.gene04033:CDS | 55.0% | |
| ! | CGGGTTGGGTCAGATTTGGA+CGG | + | chr3.3:50658139-50658158 | MS.gene04033:CDS | 55.0% |
| ! | GGATCTTGGTAACTCGGGTC+GGG | - | chr3.3:50657497-50657516 | None:intergenic | 55.0% |
| ! | TTTCCACGCTGTCGACTAGC+TGG | + | chr3.3:50658023-50658042 | MS.gene04033:CDS | 55.0% |
| !! | GTTTCTGCCGTGGTGGATCT+TGG | - | chr3.3:50657511-50657530 | None:intergenic | 55.0% |
| !! | TGATGATTGGGTGGTGGGAG+TGG | - | chr3.3:50657411-50657430 | None:intergenic | 55.0% |
| !! | TTTGATTCGGTGATGGGGCG+CGG | + | chr3.3:50658187-50658206 | MS.gene04033:CDS | 55.0% |
| !!! | ATCTTGTTTTCCGGCGGTCG+CGG | - | chr3.3:50657231-50657250 | None:intergenic | 55.0% |
| CGATACAGCGTTCGTCACGG+CGG | - | chr3.3:50657859-50657878 | None:intergenic | 60.0% | |
| GAGCTTATCGGATCCGACCC+GGG | + | chr3.3:50657671-50657690 | MS.gene04033:CDS | 60.0% | |
| GGAGCTTATCGGATCCGACC+CGG | + | chr3.3:50657670-50657689 | MS.gene04033:CDS | 60.0% | |
| GTGAAGATTAAGGCCGCGCG+TGG | + | chr3.3:50657824-50657843 | MS.gene04033:CDS | 60.0% | |
| GTGTTATCGCGGGTCGGGTT+GGG | + | chr3.3:50658125-50658144 | MS.gene04033:CDS | 60.0% | |
| ! | CACGCTGTCGACTAGCTGGA+GGG | + | chr3.3:50658027-50658046 | MS.gene04033:CDS | 60.0% |
| !! | GGGTCGGGTTGGGTCAGATT+TGG | + | chr3.3:50658135-50658154 | MS.gene04033:CDS | 60.0% |
| !! | TGATTGGGTGGTGGGAGTGG+TGG | - | chr3.3:50657408-50657427 | None:intergenic | 60.0% |
| ATCTCGCCGCACGCAGTGCA+TGG | - | chr3.3:50657596-50657615 | None:intergenic | 65.0% | |
| CCTCCAGCTAGTCGACAGCG+TGG | - | chr3.3:50658029-50658048 | None:intergenic | 65.0% | |
| CGTGTTATCGCGGGTCGGGT+TGG | + | chr3.3:50658124-50658143 | MS.gene04033:CDS | 65.0% | |
| TCTCGCCGCACGCAGTGCAT+GGG | - | chr3.3:50657595-50657614 | None:intergenic | 65.0% | |
| ! | CCACGCTGTCGACTAGCTGG+AGG | + | chr3.3:50658026-50658045 | MS.gene04033:CDS | 65.0% |
| ! | TTGTTTTCCGGCGGTCGCGG+CGG | - | chr3.3:50657228-50657247 | None:intergenic | 65.0% |
| ! | GTGATGGGGCGCGGCGAGAG+TGG | + | chr3.3:50658196-50658215 | MS.gene04033:CDS | 75.0% |
| ! | GCGGCGCGTGACACCACGCG+CGG | - | chr3.3:50657840-50657859 | None:intergenic | 80.0% |
| ! | ACCGTCGCCGCCGCGACCGC+CGG | + | chr3.3:50657218-50657237 | MS.gene04033:CDS | 85.0% |
| ! | TCCGGCGGTCGCGGCGGCGA+CGG | - | chr3.3:50657222-50657241 | None:intergenic | 85.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 50657140 | 50658306 | 50657140 | ID=MS.gene04033 |
| chr3.3 | mRNA | 50657140 | 50658306 | 50657140 | ID=MS.gene04033.t1;Parent=MS.gene04033 |
| chr3.3 | exon | 50657140 | 50658306 | 50657140 | ID=MS.gene04033.t1.exon1;Parent=MS.gene04033.t1 |
| chr3.3 | CDS | 50657140 | 50658306 | 50657140 | ID=cds.MS.gene04033.t1;Parent=MS.gene04033.t1 |
| Gene Sequence |
| Protein sequence |
