Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene040446.t1 | RHN44987.1 | 97.3 | 188 | 5 | 0 | 2 | 189 | 66 | 253 | 3.20E-97 | 364.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene040446.t1 | Q7ZZ00 | 39.0 | 177 | 95 | 2 | 2 | 166 | 95 | 270 | 9.7e-26 | 118.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene040446.t1 | A0A072TXV8 | 97.3 | 188 | 5 | 0 | 2 | 189 | 4 | 191 | 2.3e-97 | 364.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene040446.t1 | TF | C2H2 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene040446.t1 | MTR_7g029090 | 97.340 | 188 | 5 | 0 | 2 | 189 | 4 | 191 | 1.31e-137 | 382 |
| MS.gene040446.t1 | MTR_7g029095 | 79.787 | 188 | 4 | 1 | 2 | 189 | 66 | 219 | 1.61e-102 | 294 |
| MS.gene040446.t1 | MTR_7g029065 | 77.477 | 111 | 23 | 2 | 72 | 181 | 429 | 538 | 1.36e-48 | 165 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene040446.t1 | AT5G14140 | 65.969 | 191 | 57 | 3 | 3 | 185 | 69 | 259 | 2.99e-87 | 257 |
Find 43 sgRNAs with CRISPR-Local
Find 143 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGTTCATGATTCTTTCTTTC+AGG | 0.222702 | 7.4:-72567678 | MS.gene040446:CDS |
| GAAGTCTTCTGTCCCATTGC+TGG | 0.271752 | 7.4:-72567827 | MS.gene040446:intron |
| TGCTGGGTGTGGAGCGCGTT+TGG | 0.354156 | 7.4:-72567810 | MS.gene040446:CDS |
| TTTATCCTGTGTTTCTTTGA+AGG | 0.386367 | 7.4:+72566860 | None:intergenic |
| TTCTGTCCCATTGCTGGGTG+TGG | 0.397837 | 7.4:-72567821 | MS.gene040446:CDS |
| ATGACATGCCTTTGGTGTTA+CGG | 0.399250 | 7.4:+72566696 | None:intergenic |
| TCTCAAAAGGAGGATACTTC+AGG | 0.418130 | 7.4:-72566818 | MS.gene040446:CDS |
| ACTCCTTCCTCCATCAGCTT+TGG | 0.427536 | 7.4:-72566722 | MS.gene040446:CDS |
| CGCGCTCCACACCCAGCAAT+GGG | 0.438523 | 7.4:+72567815 | None:intergenic |
| GACTCTAGAACACACAGAAC+AGG | 0.456459 | 7.4:+72567739 | None:intergenic |
| AAGTCTTCTGTCCCATTGCT+GGG | 0.459510 | 7.4:-72567826 | MS.gene040446:CDS |
| CATATAGTATGAATGCTTAG+TGG | 0.469788 | 7.4:-72566984 | MS.gene040446:intron |
| GGAGGATACTTCAGGAATGA+TGG | 0.477569 | 7.4:-72566810 | MS.gene040446:CDS |
| AGGGACAAATGACATGCCTT+TGG | 0.478422 | 7.4:+72566688 | None:intergenic |
| AGCGCGTTTGGCTTCAATTG+AGG | 0.497142 | 7.4:-72567798 | MS.gene040446:CDS |
| AATTCAAAAGCTACAAAAGT+AGG | 0.497972 | 7.4:-72566946 | MS.gene040446:CDS |
| CGAGCTGTTCAGCGTGGGAA+GGG | 0.513540 | 7.4:-72566665 | MS.gene040446:CDS |
| TCGAGCTGTTCAGCGTGGGA+AGG | 0.516848 | 7.4:-72566666 | MS.gene040446:CDS |
| GAATGCTTAGTGGAAGGTTG+CGG | 0.528977 | 7.4:-72566974 | MS.gene040446:CDS |
| ACGCGCTCCACACCCAGCAA+TGG | 0.530230 | 7.4:+72567814 | None:intergenic |
| TTCCCACGCTGAACAGCTCG+AGG | 0.542891 | 7.4:+72566668 | None:intergenic |
| GCGTGGGAAGGGATCTAACT+CGG | 0.545220 | 7.4:-72566654 | MS.gene040446:CDS |
| TCCCTCGAGCTGTTCAGCGT+GGG | 0.551783 | 7.4:-72566670 | MS.gene040446:CDS |
| CTCTGCCTTCAAAGAAACAC+AGG | 0.556458 | 7.4:-72566865 | MS.gene040446:CDS |
| AAAGAAAGAATCATGAACTT+CGG | 0.556536 | 7.4:+72567682 | None:intergenic |
| GGAAGCGGAAAATGCAGCTA+TGG | 0.572002 | 7.4:-72566789 | MS.gene040446:CDS |
| CGTGGGAAGGGATCTAACTC+GGG | 0.575940 | 7.4:-72566653 | MS.gene040446:CDS |
| CGACCAAAGCTGATGGAGGA+AGG | 0.576405 | 7.4:+72566719 | None:intergenic |
| GTCCCTCGAGCTGTTCAGCG+TGG | 0.579249 | 7.4:-72566671 | MS.gene040446:CDS |
| TACTTCAGGAATGATGGAAG+CGG | 0.587592 | 7.4:-72566804 | MS.gene040446:CDS |
| AGTATCTAGATTAAATACTT+CGG | 0.598587 | 7.4:-72566750 | MS.gene040446:CDS |
| TATGCTGAGCAAACGTGATG+TGG | 0.604052 | 7.4:+72567712 | None:intergenic |
| TAGTATGAATGCTTAGTGGA+AGG | 0.607474 | 7.4:-72566980 | MS.gene040446:CDS |
| TTTCAGGCAAAAGTTGCTCG+TGG | 0.610110 | 7.4:-72567662 | MS.gene040446:CDS |
| GTTACGGCGACCAAAGCTGA+TGG | 0.611864 | 7.4:+72566712 | None:intergenic |
| ATCTAGATACTGCTGAAACA+AGG | 0.615031 | 7.4:+72566762 | None:intergenic |
| TTTGGTCGCCGTAACACCAA+AGG | 0.617378 | 7.4:-72566704 | MS.gene040446:CDS |
| AAAGCTGATGGAGGAAGGAG+TGG | 0.625836 | 7.4:+72566724 | None:intergenic |
| ATGCTGAGCAAACGTGATGT+GGG | 0.625974 | 7.4:+72567713 | None:intergenic |
| TCCCACGCTGAACAGCTCGA+GGG | 0.633991 | 7.4:+72566669 | None:intergenic |
| AGTTGCTCGTGGCTATGACA+TGG | 0.638718 | 7.4:-72567651 | MS.gene040446:intron |
| ACGGCGACCAAAGCTGATGG+AGG | 0.668193 | 7.4:+72566715 | None:intergenic |
| TGCTGAGCAAACGTGATGTG+GGG | 0.701816 | 7.4:+72567714 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATAACCAAATTATAAAAA+AGG | + | chr7.4:72567976-72567995 | None:intergenic | 10.0% |
| !! | AAATTAAATAGAAGATATAA+AGG | + | chr7.4:72568037-72568056 | None:intergenic | 10.0% |
| !! | TTGAATTTATACTTATAAAA+TGG | - | chr7.4:72567551-72567570 | MS.gene040446:intron | 10.0% |
| !!! | ATTTATATTTTTGATTAATG+TGG | - | chr7.4:72566697-72566716 | MS.gene040446:CDS | 10.0% |
| !!! | ATTTGTAAGATTTTAAATTA+AGG | + | chr7.4:72567939-72567958 | None:intergenic | 10.0% |
| !! | GTTATAGATAATTAATGATA+GGG | - | chr7.4:72568260-72568279 | MS.gene040446:intron | 15.0% |
| !! | TAAGAAAGATTTCAAATTAA+TGG | - | chr7.4:72568231-72568250 | MS.gene040446:intron | 15.0% |
| !! | TCAAAAATAAAAAAGGAATA+AGG | - | chr7.4:72567109-72567128 | MS.gene040446:intron | 15.0% |
| !!! | AAGCTAACATATTATTTTTT+CGG | - | chr7.4:72568367-72568386 | MS.gene040446:intron | 15.0% |
| !!! | TATGATTTAATTTAATGACA+TGG | - | chr7.4:72567839-72567858 | MS.gene040446:intron | 15.0% |
| !! | AAATAATAGGTATTAGAACA+AGG | - | chr7.4:72566970-72566989 | MS.gene040446:CDS | 20.0% |
| !! | AATTTCAAGAACTATAAGAA+AGG | + | chr7.4:72567279-72567298 | None:intergenic | 20.0% |
| !! | AGCTTCTTCAAAAATAAAAA+AGG | - | chr7.4:72567102-72567121 | MS.gene040446:intron | 20.0% |
| !! | AGTATCTAGATTAAATACTT+CGG | - | chr7.4:72568693-72568712 | MS.gene040446:intron | 20.0% |
| !! | CGTTATAGATAATTAATGAT+AGG | - | chr7.4:72568259-72568278 | MS.gene040446:intron | 20.0% |
| !! | TATATCTGTAATCATTTATG+TGG | - | chr7.4:72567307-72567326 | MS.gene040446:intron | 20.0% |
| !! | TTAATGATTTGACAAAGATT+GGG | + | chr7.4:72568214-72568233 | None:intergenic | 20.0% |
| !!! | ACATATGAATTTTCTCTATT+AGG | - | chr7.4:72568394-72568413 | MS.gene040446:intron | 20.0% |
| !!! | ATTCTAGTTCTCAAAATAAA+AGG | + | chr7.4:72566933-72566952 | None:intergenic | 20.0% |
| !!! | GAAAGACCTTTTTTATAATT+TGG | - | chr7.4:72567967-72567986 | MS.gene040446:intron | 20.0% |
| !!! | GTAAGATTTTAAATTAAGGT+AGG | + | chr7.4:72567935-72567954 | None:intergenic | 20.0% |
| !!! | TGTTCTAATACCTATTATTT+TGG | + | chr7.4:72566970-72566989 | None:intergenic | 20.0% |
| !!! | TTGTTATTTGAAACATACAA+TGG | + | chr7.4:72567359-72567378 | None:intergenic | 20.0% |
| ! | AAAGAAAGAATCATGAACTT+CGG | + | chr7.4:72567764-72567783 | None:intergenic | 25.0% |
| ! | AAATGACAATCTCTATAACA+TGG | - | chr7.4:72568421-72568440 | MS.gene040446:intron | 25.0% |
| ! | AAGCAATATGTTACAAAATG+AGG | + | chr7.4:72567588-72567607 | None:intergenic | 25.0% |
| ! | AATTCAAAAGCTACAAAAGT+AGG | - | chr7.4:72568497-72568516 | MS.gene040446:intron | 25.0% |
| ! | AGAGTTAAGACCAAAATAAT+AGG | - | chr7.4:72566957-72566976 | MS.gene040446:CDS | 25.0% |
| ! | AGATATAAAGGATGTAACAA+AGG | + | chr7.4:72568025-72568044 | None:intergenic | 25.0% |
| ! | CTTAATGATTTGACAAAGAT+TGG | + | chr7.4:72568215-72568234 | None:intergenic | 25.0% |
| ! | TGATTTAATGCACTGTTATT+AGG | - | chr7.4:72567137-72567156 | MS.gene040446:intron | 25.0% |
| !! | TGTATCTTTTATCAACGTAA+CGG | - | chr7.4:72567429-72567448 | MS.gene040446:intron | 25.0% |
| !! | TTTTCCTAGAAGTTAATCTT+TGG | - | chr7.4:72567526-72567545 | MS.gene040446:intron | 25.0% |
| AAAGCCAAAGATTAACTTCT+AGG | + | chr7.4:72567533-72567552 | None:intergenic | 30.0% | |
| AACTATAGTCCAAATCATCA+AGG | - | chr7.4:72568144-72568163 | MS.gene040446:intron | 30.0% | |
| AAGTTAGACGAACACAATAA+AGG | + | chr7.4:72566746-72566765 | None:intergenic | 30.0% | |
| AGTTCATGATTCTTTCTTTC+AGG | - | chr7.4:72567765-72567784 | MS.gene040446:CDS | 30.0% | |
| ATAAAAGGACTCTAGTAACA+TGG | + | chr7.4:72566918-72566937 | None:intergenic | 30.0% | |
| CATATAGTATGAATGCTTAG+TGG | - | chr7.4:72568459-72568478 | MS.gene040446:intron | 30.0% | |
| CATCATTAACTGTTCTCAAA+GGG | + | chr7.4:72567212-72567231 | None:intergenic | 30.0% | |
| TCATAGTTGAGTTTCTTAGA+AGG | - | chr7.4:72568069-72568088 | MS.gene040446:intron | 30.0% | |
| TGGTTAATAGACTTCAGTTA+AGG | - | chr7.4:72566811-72566830 | MS.gene040446:CDS | 30.0% | |
| TTGATTCATGTAACTAACCT+CGG | - | chr7.4:72568298-72568317 | MS.gene040446:intron | 30.0% | |
| TTTATCCTGTGTTTCTTTGA+AGG | + | chr7.4:72568586-72568605 | None:intergenic | 30.0% | |
| ! | ATTCCAAATCCTTGATGATT+TGG | + | chr7.4:72568156-72568175 | None:intergenic | 30.0% |
| ! | ATTTGGACTATAGTTTTCTC+TGG | + | chr7.4:72568139-72568158 | None:intergenic | 30.0% |
| ! | CGTTGATAAAAGATACACTT+TGG | + | chr7.4:72567426-72567445 | None:intergenic | 30.0% |
| AAAGACAGTCCATTAGTTAG+TGG | - | chr7.4:72568103-72568122 | MS.gene040446:intron | 35.0% | |
| AACCAATATTTGTTCCATCC+AGG | + | chr7.4:72566868-72566887 | None:intergenic | 35.0% | |
| AAGGATGTAACAAAGGAAGA+AGG | + | chr7.4:72568018-72568037 | None:intergenic | 35.0% | |
| ACGCAAAAAACCTTCTCAAA+AGG | - | chr7.4:72568612-72568631 | MS.gene040446:intron | 35.0% | |
| ACTATATGATTGTGCTCTAG+TGG | - | chr7.4:72566791-72566810 | MS.gene040446:CDS | 35.0% | |
| AGAACAAGGCATGCTAATTT+GGG | - | chr7.4:72566984-72567003 | MS.gene040446:intron | 35.0% | |
| AGGTAAGCAAGTAGTATAAC+AGG | + | chr7.4:72567259-72567278 | None:intergenic | 35.0% | |
| AGTCCAAATCATCAAGGATT+TGG | - | chr7.4:72568150-72568169 | MS.gene040446:intron | 35.0% | |
| ATCCTGGATGGAACAAATAT+TGG | - | chr7.4:72566863-72566882 | MS.gene040446:CDS | 35.0% | |
| ATCTAGATACTGCTGAAACA+AGG | + | chr7.4:72568684-72568703 | None:intergenic | 35.0% | |
| CAAAAAACCTTCTCAAAAGG+AGG | - | chr7.4:72568615-72568634 | MS.gene040446:intron | 35.0% | |
| CCATCATTAACTGTTCTCAA+AGG | + | chr7.4:72567213-72567232 | None:intergenic | 35.0% | |
| GTAACATATTGCTTTGTGCA+GGG | - | chr7.4:72567594-72567613 | MS.gene040446:intron | 35.0% | |
| TAGAACAAGGCATGCTAATT+TGG | - | chr7.4:72566983-72567002 | MS.gene040446:intron | 35.0% | |
| TAGTATGAATGCTTAGTGGA+AGG | - | chr7.4:72568463-72568482 | MS.gene040446:intron | 35.0% | |
| TGAGTTTGACGAAATCACAA+TGG | - | chr7.4:72567379-72567398 | MS.gene040446:intron | 35.0% | |
| TGTAACATATTGCTTTGTGC+AGG | - | chr7.4:72567593-72567612 | MS.gene040446:intron | 35.0% | |
| TTAGGTCTTACTCAAACTTC+AGG | - | chr7.4:72567155-72567174 | MS.gene040446:intron | 35.0% | |
| TTCGCTTTACCACTAACTAA+TGG | + | chr7.4:72568115-72568134 | None:intergenic | 35.0% | |
| TTGAAAAACTCGAATGACGT+CGG | + | chr7.4:72568553-72568572 | None:intergenic | 35.0% | |
| TTGGAGCTTCAACAAAATCA+CGG | + | chr7.4:72567407-72567426 | None:intergenic | 35.0% | |
| ! | AAACTTTATTTACCTCCCAG+CGG | - | chr7.4:72566888-72566907 | MS.gene040446:CDS | 35.0% |
| ! | CCTTTGAGAACAGTTAATGA+TGG | - | chr7.4:72567210-72567229 | MS.gene040446:intron | 35.0% |
| ! | GGATTTGGAATCAAATGTTC+AGG | - | chr7.4:72568165-72568184 | MS.gene040446:intron | 35.0% |
| !!! | GTCATTCGAGTTTTTCAAGA+AGG | - | chr7.4:72568555-72568574 | MS.gene040446:intron | 35.0% |
| ACTTACCGCGAATTCAAACA+TGG | - | chr7.4:72567478-72567497 | MS.gene040446:intron | 40.0% | |
| AGACGAACACAATAAAGGCT+CGG | + | chr7.4:72566741-72566760 | None:intergenic | 40.0% | |
| AGACTACACAACAACAACAG+AGG | + | chr7.4:72568347-72568366 | None:intergenic | 40.0% | |
| CAATAAAGGCTCGGAAATTG+AGG | + | chr7.4:72566732-72566751 | None:intergenic | 40.0% | |
| GAATCGAATCAGAGACCTTA+AGG | + | chr7.4:72567052-72567071 | None:intergenic | 40.0% | |
| GAATTCGCGGTAAGTAAGTT+TGG | + | chr7.4:72567473-72567492 | None:intergenic | 40.0% | |
| TAGTAACATGGAATTCCGCT+GGG | + | chr7.4:72566906-72566925 | None:intergenic | 40.0% | |
| TCTCAAAAGGAGGATACTTC+AGG | - | chr7.4:72568625-72568644 | MS.gene040446:intron | 40.0% | |
| TGAAAAACTCGAATGACGTC+GGG | + | chr7.4:72568552-72568571 | None:intergenic | 40.0% | |
| TGAGACCATGTTTGAATTCG+CGG | + | chr7.4:72567486-72567505 | None:intergenic | 40.0% | |
| TTGGAATATGCTCCTCCTTA+AGG | - | chr7.4:72567034-72567053 | MS.gene040446:intron | 40.0% | |
| ! | ATTCTTCCCGGTGTCAATTT+GGG | - | chr7.4:72567068-72567087 | MS.gene040446:intron | 40.0% |
| ! | TACTTCAGGAATGATGGAAG+CGG | - | chr7.4:72568639-72568658 | MS.gene040446:intron | 40.0% |
| ! | TTAAGGAGGAGCATATTCCA+AGG | + | chr7.4:72567035-72567054 | None:intergenic | 40.0% |
| !! | ATGACATGCCTTTGGTGTTA+CGG | + | chr7.4:72568750-72568769 | None:intergenic | 40.0% |
| !! | GAAGTATCCTCCTTTTGAGA+AGG | + | chr7.4:72568625-72568644 | None:intergenic | 40.0% |
| AAGTCTTCTGTCCCATTGCT+GGG | - | chr7.4:72567617-72567636 | MS.gene040446:intron | 45.0% | |
| ACAAGGCATGCTAATTTGGG+TGG | - | chr7.4:72566987-72567006 | MS.gene040446:intron | 45.0% | |
| AGGGACAAATGACATGCCTT+TGG | + | chr7.4:72568758-72568777 | None:intergenic | 45.0% | |
| ATCGGAATTCGAATCCTGGA+TGG | - | chr7.4:72566851-72566870 | MS.gene040446:CDS | 45.0% | |
| ATGCTGAGCAAACGTGATGT+GGG | + | chr7.4:72567733-72567752 | None:intergenic | 45.0% | |
| CAAGGCATGCTAATTTGGGT+GGG | - | chr7.4:72566988-72567007 | MS.gene040446:intron | 45.0% | |
| CTAGTAACATGGAATTCCGC+TGG | + | chr7.4:72566907-72566926 | None:intergenic | 45.0% | |
| CTCTGCCTTCAAAGAAACAC+AGG | - | chr7.4:72568578-72568597 | MS.gene040446:intron | 45.0% | |
| GAATGCTTAGTGGAAGGTTG+CGG | - | chr7.4:72568469-72568488 | MS.gene040446:intron | 45.0% | |
| GGAGGATACTTCAGGAATGA+TGG | - | chr7.4:72568633-72568652 | MS.gene040446:intron | 45.0% | |
| TAACCTCGGCTGATGAGAAA+AGG | - | chr7.4:72568312-72568331 | MS.gene040446:intron | 45.0% | |
| TATGCTGAGCAAACGTGATG+TGG | + | chr7.4:72567734-72567753 | None:intergenic | 45.0% | |
| TCGAATCAGAGACCTTAAGG+AGG | + | chr7.4:72567049-72567068 | None:intergenic | 45.0% | |
| TTTCAGGCAAAAGTTGCTCG+TGG | - | chr7.4:72567781-72567800 | MS.gene040446:CDS | 45.0% | |
| ! | CAGTTAAGGACGTATCGATC+AGG | - | chr7.4:72566825-72566844 | MS.gene040446:CDS | 45.0% |
| ! | GACGTATCGATCAGGAGTAT+CGG | - | chr7.4:72566833-72566852 | MS.gene040446:CDS | 45.0% |
| ! | GATTCTTCCCGGTGTCAATT+TGG | - | chr7.4:72567067-72567086 | MS.gene040446:intron | 45.0% |
| ! | GTCTCTGATTCGATTCTTCC+CGG | - | chr7.4:72567056-72567075 | MS.gene040446:intron | 45.0% |
| !! | GACTCTAGAACACACAGAAC+AGG | + | chr7.4:72567707-72567726 | None:intergenic | 45.0% |
| !! | GAGTATCGGAATTCGAATCC+TGG | - | chr7.4:72566847-72566866 | MS.gene040446:CDS | 45.0% |
| AAAGCTGATGGAGGAAGGAG+TGG | + | chr7.4:72568722-72568741 | None:intergenic | 50.0% | |
| ACTCCTTCCTCCATCAGCTT+TGG | - | chr7.4:72568721-72568740 | MS.gene040446:intron | 50.0% | |
| AGTTGCTCGTGGCTATGACA+TGG | - | chr7.4:72567792-72567811 | MS.gene040446:CDS | 50.0% | |
| GAAGTCTTCTGTCCCATTGC+TGG | - | chr7.4:72567616-72567635 | MS.gene040446:intron | 50.0% | |
| GGAAGCGGAAAATGCAGCTA+TGG | - | chr7.4:72568654-72568673 | MS.gene040446:intron | 50.0% | |
| TAACATGGAATTCCGCTGGG+AGG | + | chr7.4:72566903-72566922 | None:intergenic | 50.0% | |
| TAGCCCACCCAAATTGACAC+CGG | + | chr7.4:72567078-72567097 | None:intergenic | 50.0% | |
| TGCTGAGCAAACGTGATGTG+GGG | + | chr7.4:72567732-72567751 | None:intergenic | 50.0% | |
| TTTGGTCGCCGTAACACCAA+AGG | - | chr7.4:72568739-72568758 | MS.gene040446:intron | 50.0% | |
| ! | AAGCCTTTTCTCATCAGCCG+AGG | + | chr7.4:72568318-72568337 | None:intergenic | 50.0% |
| ! | AGCGCGTTTGGCTTCAATTG+AGG | - | chr7.4:72567645-72567664 | MS.gene040446:intron | 50.0% |
| ! | TTCCCGGTGTCAATTTGGGT+GGG | - | chr7.4:72567072-72567091 | MS.gene040446:intron | 50.0% |
| AGCCCACCCAAATTGACACC+GGG | + | chr7.4:72567077-72567096 | None:intergenic | 55.0% | |
| CATGCTAATTTGGGTGGGCC+TGG | - | chr7.4:72566993-72567012 | MS.gene040446:intron | 55.0% | |
| CGACCAAAGCTGATGGAGGA+AGG | + | chr7.4:72568727-72568746 | None:intergenic | 55.0% | |
| CGTGGGAAGGGATCTAACTC+GGG | - | chr7.4:72568790-72568809 | MS.gene040446:intron | 55.0% | |
| GCGTGGGAAGGGATCTAACT+CGG | - | chr7.4:72568789-72568808 | MS.gene040446:intron | 55.0% | |
| GTTACGGCGACCAAAGCTGA+TGG | + | chr7.4:72568734-72568753 | None:intergenic | 55.0% | |
| TTCTGTCCCATTGCTGGGTG+TGG | - | chr7.4:72567622-72567641 | MS.gene040446:intron | 55.0% | |
| ! | CTTCCCGGTGTCAATTTGGG+TGG | - | chr7.4:72567071-72567090 | MS.gene040446:intron | 55.0% |
| ACGGCGACCAAAGCTGATGG+AGG | + | chr7.4:72568731-72568750 | None:intergenic | 60.0% | |
| CGAGCTGTTCAGCGTGGGAA+GGG | - | chr7.4:72568778-72568797 | MS.gene040446:intron | 60.0% | |
| GCTAATTTGGGTGGGCCTGG+TGG | - | chr7.4:72566996-72567015 | MS.gene040446:intron | 60.0% | |
| GTGGTGTTTGCTCGGGACCT+TGG | - | chr7.4:72567015-72567034 | MS.gene040446:intron | 60.0% | |
| TCCCACGCTGAACAGCTCGA+GGG | + | chr7.4:72568777-72568796 | None:intergenic | 60.0% | |
| TCCCTCGAGCTGTTCAGCGT+GGG | - | chr7.4:72568773-72568792 | MS.gene040446:intron | 60.0% | |
| TCGAGCTGTTCAGCGTGGGA+AGG | - | chr7.4:72568777-72568796 | MS.gene040446:intron | 60.0% | |
| TTCCCACGCTGAACAGCTCG+AGG | + | chr7.4:72568778-72568797 | None:intergenic | 60.0% | |
| ! | TGGGCCTGGTGGTGTTTGCT+CGG | - | chr7.4:72567007-72567026 | MS.gene040446:intron | 60.0% |
| ACGCGCTCCACACCCAGCAA+TGG | + | chr7.4:72567632-72567651 | None:intergenic | 65.0% | |
| CGCGCTCCACACCCAGCAAT+GGG | + | chr7.4:72567631-72567650 | None:intergenic | 65.0% | |
| GGTCCCGAGCAAACACCACC+AGG | + | chr7.4:72567014-72567033 | None:intergenic | 65.0% | |
| GTCCCTCGAGCTGTTCAGCG+TGG | - | chr7.4:72568772-72568791 | MS.gene040446:intron | 65.0% | |
| TGCTGGGTGTGGAGCGCGTT+TGG | - | chr7.4:72567633-72567652 | MS.gene040446:intron | 65.0% | |
| ! | GGGCCTGGTGGTGTTTGCTC+GGG | - | chr7.4:72567008-72567027 | MS.gene040446:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.4 | gene | 72566631 | 72568834 | 72566631 | ID=MS.gene040446 |
| chr7.4 | mRNA | 72566631 | 72568834 | 72566631 | ID=MS.gene040446.t1;Parent=MS.gene040446 |
| chr7.4 | exon | 72568828 | 72568834 | 72568828 | ID=MS.gene040446.t1.exon1;Parent=MS.gene040446.t1 |
| chr7.4 | CDS | 72568828 | 72568834 | 72568828 | ID=cds.MS.gene040446.t1;Parent=MS.gene040446.t1 |
| chr7.4 | exon | 72567652 | 72567845 | 72567652 | ID=MS.gene040446.t1.exon2;Parent=MS.gene040446.t1 |
| chr7.4 | CDS | 72567652 | 72567845 | 72567652 | ID=cds.MS.gene040446.t1;Parent=MS.gene040446.t1 |
| chr7.4 | exon | 72566631 | 72566999 | 72566631 | ID=MS.gene040446.t1.exon3;Parent=MS.gene040446.t1 |
| chr7.4 | CDS | 72566631 | 72566999 | 72566631 | ID=cds.MS.gene040446.t1;Parent=MS.gene040446.t1 |
| Gene Sequence |
| Protein sequence |
