Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene040450.t1 | RHN44987.1 | 97.2 | 253 | 7 | 0 | 1 | 253 | 1 | 253 | 2.00E-134 | 488.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene040450.t1 | Q7ZZ00 | 33.8 | 231 | 131 | 4 | 13 | 230 | 49 | 270 | 1.1e-27 | 125.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene040450.t1 | A0A396H268 | 97.2 | 253 | 7 | 0 | 1 | 253 | 1 | 253 | 1.4e-134 | 488.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene040450.t1 | TF | C2H2 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene040450.t1 | MTR_7g029095 | 83.794 | 253 | 7 | 1 | 1 | 253 | 1 | 219 | 9.49e-153 | 424 |
| MS.gene040450.t1 | MTR_7g029090 | 97.884 | 189 | 4 | 0 | 65 | 253 | 3 | 191 | 2.43e-138 | 387 |
| MS.gene040450.t1 | MTR_7g029065 | 78.378 | 111 | 22 | 2 | 136 | 245 | 429 | 538 | 1.44e-48 | 168 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene040450.t1 | AT5G14140 | 63.563 | 247 | 81 | 4 | 11 | 249 | 14 | 259 | 9.51e-112 | 322 |
Find 63 sgRNAs with CRISPR-Local
Find 191 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGCTCATGATTCTTTCTTTC+AGG | 0.183557 | 7.4:-72622343 | MS.gene040450:CDS |
| GAAGTCTTCTGTCCCATTGC+TGG | 0.271752 | 7.4:-72622492 | MS.gene040450:CDS |
| GGGTTGGAACTTACGTGAAA+TGG | 0.341316 | 7.4:+72623666 | None:intergenic |
| TGCTGGGTGTGGAGCGCGTT+TGG | 0.354156 | 7.4:-72622475 | MS.gene040450:CDS |
| GCGCGGGAAGGGATCTAATT+CGG | 0.361395 | 7.4:-72621057 | MS.gene040450:CDS |
| CATATAGTATGAATGTTTAG+TGG | 0.382154 | 7.4:-72621387 | MS.gene040450:intron |
| TTTATCCTGTGTTTCTTTGA+AGG | 0.386367 | 7.4:+72621263 | None:intergenic |
| TTCTGTCCCATTGCTGGGTG+TGG | 0.397837 | 7.4:-72622486 | MS.gene040450:CDS |
| CAAAACGGAAAATTTGAATC+CGG | 0.397939 | 7.4:+72623694 | None:intergenic |
| ATGACATGCCTTTGGTGTTA+CGG | 0.399250 | 7.4:+72621099 | None:intergenic |
| CGCGGGAAGGGATCTAATTC+GGG | 0.406429 | 7.4:-72621056 | MS.gene040450:CDS |
| TCTCAAAAGGAGGATACTTC+AGG | 0.418130 | 7.4:-72621221 | MS.gene040450:CDS |
| ACTCCTTCCTCCATCAGCTT+TGG | 0.427536 | 7.4:-72621125 | MS.gene040450:CDS |
| ACGAGAACTTCTTGTCAAAC+AGG | 0.437900 | 7.4:-72623611 | MS.gene040450:intron |
| CGTGAAATGGGTTTCCAAAA+CGG | 0.438517 | 7.4:+72623679 | None:intergenic |
| CGCGCTCCACACCCAGCAAT+GGG | 0.438523 | 7.4:+72622480 | None:intergenic |
| GGTTGGAACTTACGTGAAAT+GGG | 0.448158 | 7.4:+72623667 | None:intergenic |
| GACTCTAGAACACACAGAAC+AGG | 0.456459 | 7.4:+72622404 | None:intergenic |
| AAGTCTTCTGTCCCATTGCT+GGG | 0.459510 | 7.4:-72622491 | MS.gene040450:CDS |
| GGAGGATACTTCAGGAATGA+TGG | 0.477569 | 7.4:-72621213 | MS.gene040450:CDS |
| AGGGACAAATGACATGCCTT+TGG | 0.478422 | 7.4:+72621091 | None:intergenic |
| GGAAGTGGAAAATCAAAATC+CGG | 0.482912 | 7.4:-72623713 | MS.gene040450:CDS |
| AAAGAAAGAATCATGAGCTT+CGG | 0.485050 | 7.4:+72622347 | None:intergenic |
| CGAGCTGTTCAGCGCGGGAA+GGG | 0.490505 | 7.4:-72621068 | MS.gene040450:CDS |
| TCCCTCGAGCTGTTCAGCGC+GGG | 0.491415 | 7.4:-72621073 | MS.gene040450:CDS |
| TTCCCGCGCTGAACAGCTCG+AGG | 0.497355 | 7.4:+72621071 | None:intergenic |
| TGACAAGAAGTTCTCGTTCG+AGG | 0.497533 | 7.4:+72623617 | None:intergenic |
| GATAGCGAAGAAAGGTGAAT+CGG | 0.497649 | 7.4:+72623645 | None:intergenic |
| AATTCAAAAGCTACAAAAGT+AGG | 0.497972 | 7.4:-72621349 | MS.gene040450:CDS |
| GATTCACCTTTCTTCGCTAT+CGG | 0.511476 | 7.4:-72623643 | MS.gene040450:CDS |
| GTAAGCTTATTTCTTAGTAA+CGG | 0.517163 | 7.4:+72621028 | None:intergenic |
| TCGAGCTGTTCAGCGCGGGA+AGG | 0.524899 | 7.4:-72621069 | MS.gene040450:CDS |
| TTAATTTGAAAAGGTTGCGT+TGG | 0.527267 | 7.4:-72623493 | MS.gene040450:intron |
| ACGCGCTCCACACCCAGCAA+TGG | 0.530230 | 7.4:+72622479 | None:intergenic |
| CGAAGAAAGGTGAATCGGGT+TGG | 0.552955 | 7.4:+72623650 | None:intergenic |
| ATTTGAATTAACACAAGAGA+AGG | 0.553168 | 7.4:-72623469 | MS.gene040450:CDS |
| TAGTATGAATGTTTAGTGGA+AGG | 0.553562 | 7.4:-72621383 | MS.gene040450:CDS |
| CTCTGCCTTCAAAGAAACAC+AGG | 0.556458 | 7.4:-72621268 | MS.gene040450:CDS |
| TACTTCAGGAATGATGGAAG+TGG | 0.560728 | 7.4:-72621207 | MS.gene040450:CDS |
| GGAAGTGGAAAATGCAGCTA+TGG | 0.560741 | 7.4:-72621192 | MS.gene040450:CDS |
| ATTTGATACAAGAGGATGGA+AGG | 0.563551 | 7.4:-72623434 | MS.gene040450:intron |
| ATAGCGAAGAAAGGTGAATC+GGG | 0.565377 | 7.4:+72623646 | None:intergenic |
| GAATGTTTAGTGGAAGGGTG+CGG | 0.566139 | 7.4:-72621377 | MS.gene040450:CDS |
| AGTATGAATGTTTAGTGGAA+GGG | 0.570063 | 7.4:-72621382 | MS.gene040450:CDS |
| CGACCAAAGCTGATGGAGGA+AGG | 0.576405 | 7.4:+72621122 | None:intergenic |
| AGGTTACCGATAGCGAAGAA+AGG | 0.581308 | 7.4:+72623637 | None:intergenic |
| GCTTGAGGATTTGATACAAG+AGG | 0.581314 | 7.4:-72623442 | MS.gene040450:CDS |
| GGTTGAACTAGCGATGGAAG+TGG | 0.593489 | 7.4:-72623728 | None:intergenic |
| AGTATCTAGATTAAATACTT+CGG | 0.598587 | 7.4:-72621153 | MS.gene040450:CDS |
| ACAAGAGAAGGAACAGCTTG+AGG | 0.601672 | 7.4:-72623457 | MS.gene040450:CDS |
| TATGCTGAGCAAACGTGATG+TGG | 0.604052 | 7.4:+72622377 | None:intergenic |
| GAGGATTTGATACAAGAGGA+TGG | 0.605203 | 7.4:-72623438 | MS.gene040450:CDS |
| TTTCAGGCAAAAGTTGCTCG+TGG | 0.610110 | 7.4:-72622327 | MS.gene040450:CDS |
| GTTACGGCGACCAAAGCTGA+TGG | 0.611864 | 7.4:+72621115 | None:intergenic |
| ATCTAGATACTGCTGAAACA+AGG | 0.615031 | 7.4:+72621165 | None:intergenic |
| TCCCGCGCTGAACAGCTCGA+GGG | 0.617014 | 7.4:+72621072 | None:intergenic |
| TTTGGTCGCCGTAACACCAA+AGG | 0.617378 | 7.4:-72621107 | MS.gene040450:CDS |
| AAAGCTGATGGAGGAAGGAG+TGG | 0.625836 | 7.4:+72621127 | None:intergenic |
| ATGCTGAGCAAACGTGATGT+GGG | 0.625974 | 7.4:+72622378 | None:intergenic |
| GTCCCTCGAGCTGTTCAGCG+CGG | 0.630621 | 7.4:-72621074 | MS.gene040450:CDS |
| AGTTGCTCGTGGCTATGACA+TGG | 0.638718 | 7.4:-72622316 | MS.gene040450:intron |
| ACGGCGACCAAAGCTGATGG+AGG | 0.668193 | 7.4:+72621118 | None:intergenic |
| TGCTGAGCAAACGTGATGTG+GGG | 0.701816 | 7.4:+72622379 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATTAAATAGAAGATATAA+AGG | + | chr7.4:72622678-72622697 | None:intergenic | 10.0% |
| !! | TCAAAAATAAAAAAAGAATA+AGG | - | chr7.4:72621754-72621773 | MS.gene040450:intron | 10.0% |
| !! | TTGAATTTATACTTATAAAA+TGG | - | chr7.4:72622192-72622211 | MS.gene040450:intron | 10.0% |
| !!! | ATTTGTAAGATTTTAAATTA+AGG | + | chr7.4:72622580-72622599 | None:intergenic | 10.0% |
| !! | AACTAAAATAGTAAACAAAA+AGG | + | chr7.4:72622999-72623018 | None:intergenic | 15.0% |
| !! | ACATAACCAAATTATAAAAA+AGG | + | chr7.4:72622617-72622636 | None:intergenic | 15.0% |
| !! | ACATTAAAAAACCTTAATTT+GGG | - | chr7.4:72621455-72621474 | MS.gene040450:intron | 15.0% |
| !! | GTTATAGATAATTAATGATA+GGG | - | chr7.4:72623154-72623173 | MS.gene040450:intron | 15.0% |
| !!! | TATGATTTAATTTAATGACA+TGG | - | chr7.4:72622480-72622499 | MS.gene040450:CDS | 15.0% |
| !! | AAATAATAGGCATTAGAATA+AGG | - | chr7.4:72621615-72621634 | MS.gene040450:intron | 20.0% |
| !! | AAGAAGGATTTCAAATTAAA+TGG | - | chr7.4:72623125-72623144 | MS.gene040450:intron | 20.0% |
| !! | AATTTCAAGAACTATAAGAA+AGG | + | chr7.4:72621924-72621943 | None:intergenic | 20.0% |
| !! | AGTATCTAGATTAAATACTT+CGG | - | chr7.4:72623596-72623615 | MS.gene040450:intron | 20.0% |
| !! | CGTTATAGATAATTAATGAT+AGG | - | chr7.4:72623153-72623172 | MS.gene040450:intron | 20.0% |
| !! | GACATTAAAAAACCTTAATT+TGG | - | chr7.4:72621454-72621473 | MS.gene040450:intron | 20.0% |
| !! | TATATCTGTAATCATTTATG+TGG | - | chr7.4:72621952-72621971 | MS.gene040450:intron | 20.0% |
| !! | TGATTTAATACACTGTTATT+AGG | - | chr7.4:72621782-72621801 | MS.gene040450:intron | 20.0% |
| !! | TTATTACGTAGAGATAATAT+GGG | + | chr7.4:72622931-72622950 | None:intergenic | 20.0% |
| !!! | ACATATGAATTTTCTCTATT+AGG | - | chr7.4:72623297-72623316 | MS.gene040450:intron | 20.0% |
| !!! | ATGATTTTGAAATCAAAGAT+TGG | + | chr7.4:72622856-72622875 | None:intergenic | 20.0% |
| !!! | GAAAGACCTTTTTTATAATT+TGG | - | chr7.4:72622608-72622627 | MS.gene040450:intron | 20.0% |
| !!! | GTAAGATTTTAAATTAAGGT+AGG | + | chr7.4:72622576-72622595 | None:intergenic | 20.0% |
| !!! | TATTCTAATGCCTATTATTT+TGG | + | chr7.4:72621615-72621634 | None:intergenic | 20.0% |
| !!! | TGATTTTGAAATCAAAGATT+GGG | + | chr7.4:72622855-72622874 | None:intergenic | 20.0% |
| !!! | TGTATCTTTTATCAACATAA+CGG | - | chr7.4:72622074-72622093 | MS.gene040450:intron | 20.0% |
| !!! | TTGTTATTTGAAACATACAA+TGG | + | chr7.4:72622004-72622023 | None:intergenic | 20.0% |
| ! | AAAATCACAATCTTCAACAA+AGG | + | chr7.4:72622150-72622169 | None:intergenic | 25.0% |
| ! | AAATGACAATCTCTATAACA+TGG | - | chr7.4:72623324-72623343 | MS.gene040450:intron | 25.0% |
| ! | AAGCAATATGTTACAAAATG+AGG | + | chr7.4:72622229-72622248 | None:intergenic | 25.0% |
| ! | AATTCAAAAGCTACAAAAGT+AGG | - | chr7.4:72623400-72623419 | MS.gene040450:intron | 25.0% |
| ! | AGATATAAAGGATGTAACAA+AGG | + | chr7.4:72622666-72622685 | None:intergenic | 25.0% |
| ! | ATTTGAATTAACACAAGAGA+AGG | - | chr7.4:72621280-72621299 | MS.gene040450:CDS | 25.0% |
| ! | CATATAGTATGAATGTTTAG+TGG | - | chr7.4:72623362-72623381 | MS.gene040450:intron | 25.0% |
| ! | GTTATTACGTAGAGATAATA+TGG | + | chr7.4:72622932-72622951 | None:intergenic | 25.0% |
| ! | TATAGGTCAAATCATTAAGA+AGG | - | chr7.4:72623109-72623128 | MS.gene040450:intron | 25.0% |
| !! | TAAAAAACCTTAATTTGGGT+GGG | - | chr7.4:72621459-72621478 | MS.gene040450:intron | 25.0% |
| !! | TGTTGATAAAAGATACACTT+TGG | + | chr7.4:72622071-72622090 | None:intergenic | 25.0% |
| !! | TTAAAAAACCTTAATTTGGG+TGG | - | chr7.4:72621458-72621477 | MS.gene040450:intron | 25.0% |
| !! | TTTTCCTAGAAGTTAATCTT+TGG | - | chr7.4:72622167-72622186 | MS.gene040450:intron | 25.0% |
| !!! | ACTTGCGTTTTAATTTGAAA+AGG | - | chr7.4:72621247-72621266 | MS.gene040450:CDS | 25.0% |
| AAAGAAAGAATCATGAGCTT+CGG | + | chr7.4:72622405-72622424 | None:intergenic | 30.0% | |
| AAAGCCAAAGATTAACTTCT+AGG | + | chr7.4:72622174-72622193 | None:intergenic | 30.0% | |
| AACTATAGTCCAAATCATCA+AGG | - | chr7.4:72622785-72622804 | MS.gene040450:intron | 30.0% | |
| AAGAGAGAAATTCATCAACA+TGG | + | chr7.4:72622968-72622987 | None:intergenic | 30.0% | |
| AGAGAGAAATTCATCAACAT+GGG | + | chr7.4:72622967-72622986 | None:intergenic | 30.0% | |
| AGTATGAATGTTTAGTGGAA+GGG | - | chr7.4:72623367-72623386 | MS.gene040450:intron | 30.0% | |
| CAAAACGGAAAATTTGAATC+CGG | + | chr7.4:72621058-72621077 | None:intergenic | 30.0% | |
| CATCATTAACTGTTCTCAAA+GGG | + | chr7.4:72621857-72621876 | None:intergenic | 30.0% | |
| CCACATTAATCGAGAATATA+AGG | + | chr7.4:72621406-72621425 | None:intergenic | 30.0% | |
| CCTTATATTCTCGATTAATG+TGG | - | chr7.4:72621403-72621422 | MS.gene040450:intron | 30.0% | |
| GGAGTTAAGACCAAAATAAT+AGG | - | chr7.4:72621602-72621621 | MS.gene040450:intron | 30.0% | |
| TAGTATGAATGTTTAGTGGA+AGG | - | chr7.4:72623366-72623385 | MS.gene040450:intron | 30.0% | |
| TCATAGTTGAGTTTCTTAGA+AGG | - | chr7.4:72622710-72622729 | MS.gene040450:intron | 30.0% | |
| TTCTTGAGAACTAGAATGTT+TGG | - | chr7.4:72621581-72621600 | MS.gene040450:intron | 30.0% | |
| TTGAAAAACTCAAATGACGT+CGG | + | chr7.4:72623456-72623475 | None:intergenic | 30.0% | |
| TTTATCCTGTGTTTCTTTGA+AGG | + | chr7.4:72623489-72623508 | None:intergenic | 30.0% | |
| ! | ATTCCAAATCCTTGATGATT+TGG | + | chr7.4:72622797-72622816 | None:intergenic | 30.0% |
| ! | ATTTGGACTATAGTTTTCTC+TGG | + | chr7.4:72622780-72622799 | None:intergenic | 30.0% |
| ! | TCTTTTTGTTGAAGGGTTAT+TGG | + | chr7.4:72622880-72622899 | None:intergenic | 30.0% |
| ! | TTAATTTGAAAAGGTTGCGT+TGG | - | chr7.4:72621256-72621275 | MS.gene040450:CDS | 30.0% |
| !!! | GTCATTTGAGTTTTTCAAGA+AGG | - | chr7.4:72623458-72623477 | MS.gene040450:CDS | 30.0% |
| AAAGACAGTCCATTAGTTAG+TGG | - | chr7.4:72622744-72622763 | MS.gene040450:intron | 35.0% | |
| AACAACAACAACAACAACAG+AGG | + | chr7.4:72623241-72623260 | None:intergenic | 35.0% | |
| AAGGATGTAACAAAGGAAGA+AGG | + | chr7.4:72622659-72622678 | None:intergenic | 35.0% | |
| ACGCAAAAAACCTTCTCAAA+AGG | - | chr7.4:72623515-72623534 | MS.gene040450:intron | 35.0% | |
| AGAATAAGGCGTGCTAATTT+GGG | - | chr7.4:72621629-72621648 | MS.gene040450:intron | 35.0% | |
| AGCTCATGATTCTTTCTTTC+AGG | - | chr7.4:72622406-72622425 | MS.gene040450:CDS | 35.0% | |
| AGGTAAGCAAGTAGTATAAC+AGG | + | chr7.4:72621904-72621923 | None:intergenic | 35.0% | |
| AGTCCAAATCATCAAGGATT+TGG | - | chr7.4:72622791-72622810 | MS.gene040450:intron | 35.0% | |
| AGTCCAATAGTTAGAGGTAA+AGG | - | chr7.4:72623071-72623090 | MS.gene040450:intron | 35.0% | |
| ATCTAGATACTGCTGAAACA+AGG | + | chr7.4:72623587-72623606 | None:intergenic | 35.0% | |
| ATTCTTCCCAGTGTCAATTT+GGG | - | chr7.4:72621713-72621732 | MS.gene040450:intron | 35.0% | |
| ATTTGATACAAGAGGATGGA+AGG | - | chr7.4:72621315-72621334 | MS.gene040450:CDS | 35.0% | |
| CAAAAAACCTTCTCAAAAGG+AGG | - | chr7.4:72623518-72623537 | MS.gene040450:intron | 35.0% | |
| CCATCATTAACTGTTCTCAA+AGG | + | chr7.4:72621858-72621877 | None:intergenic | 35.0% | |
| CTATTGGACTATCTTCCATT+TGG | + | chr7.4:72623061-72623080 | None:intergenic | 35.0% | |
| GAAGATAGTCCAATAGTTAG+AGG | - | chr7.4:72623065-72623084 | MS.gene040450:intron | 35.0% | |
| GGAAGTGGAAAATCAAAATC+CGG | - | chr7.4:72621036-72621055 | MS.gene040450:CDS | 35.0% | |
| GTAACATATTGCTTTGTGCA+GGG | - | chr7.4:72622235-72622254 | MS.gene040450:intron | 35.0% | |
| GTCCAATAGTTAGAGGTAAA+GGG | - | chr7.4:72623072-72623091 | MS.gene040450:intron | 35.0% | |
| TAGAATAAGGCGTGCTAATT+TGG | - | chr7.4:72621628-72621647 | MS.gene040450:intron | 35.0% | |
| TCATAGTTGAGTTTGTCAGA+AGG | - | chr7.4:72623031-72623050 | MS.gene040450:intron | 35.0% | |
| TGAAAAACTCAAATGACGTC+GGG | + | chr7.4:72623455-72623474 | None:intergenic | 35.0% | |
| TGAGTTTGACGAAATCACAA+TGG | - | chr7.4:72622024-72622043 | MS.gene040450:intron | 35.0% | |
| TGTAACATATTGCTTTGTGC+AGG | - | chr7.4:72622234-72622253 | MS.gene040450:intron | 35.0% | |
| TTAGGTCTTACTCAAACTTC+AGG | - | chr7.4:72621800-72621819 | MS.gene040450:intron | 35.0% | |
| TTCGCTTTACCACTAACTAA+TGG | + | chr7.4:72622756-72622775 | None:intergenic | 35.0% | |
| TTGGAGCTTCAACAAAATCA+CGG | + | chr7.4:72622052-72622071 | None:intergenic | 35.0% | |
| TTTAGCTAGTACACCCAAAT+TGG | + | chr7.4:72621558-72621577 | None:intergenic | 35.0% | |
| ! | CCTTTGAGAACAGTTAATGA+TGG | - | chr7.4:72621855-72621874 | MS.gene040450:intron | 35.0% |
| ! | CGGATTCAAATTTTCCGTTT+TGG | - | chr7.4:72621056-72621075 | MS.gene040450:CDS | 35.0% |
| ! | GTAGAGATAATATGGGTTGT+TGG | + | chr7.4:72622924-72622943 | None:intergenic | 35.0% |
| ! | TAATATGGGTTGTTGGAATG+TGG | + | chr7.4:72622917-72622936 | None:intergenic | 35.0% |
| ACGAGAACTTCTTGTCAAAC+AGG | - | chr7.4:72621138-72621157 | MS.gene040450:CDS | 40.0% | |
| ACTTACCGCGAATTCAAACA+TGG | - | chr7.4:72622119-72622138 | MS.gene040450:intron | 40.0% | |
| ATAGCGAAGAAAGGTGAATC+GGG | + | chr7.4:72621106-72621125 | None:intergenic | 40.0% | |
| CACAATCTTCAACAAAGGTG+AGG | + | chr7.4:72622145-72622164 | None:intergenic | 40.0% | |
| CTCCCTTTACCTCTAACTAT+TGG | + | chr7.4:72623077-72623096 | None:intergenic | 40.0% | |
| GAATCGAATCAGAGACCTTA+AGG | + | chr7.4:72621697-72621716 | None:intergenic | 40.0% | |
| GAGGATTTGATACAAGAGGA+TGG | - | chr7.4:72621311-72621330 | MS.gene040450:CDS | 40.0% | |
| GATAGCGAAGAAAGGTGAAT+CGG | + | chr7.4:72621107-72621126 | None:intergenic | 40.0% | |
| GATTCACCTTTCTTCGCTAT+CGG | - | chr7.4:72621106-72621125 | MS.gene040450:CDS | 40.0% | |
| GATTCTTCCCAGTGTCAATT+TGG | - | chr7.4:72621712-72621731 | MS.gene040450:intron | 40.0% | |
| GCTTGAGGATTTGATACAAG+AGG | - | chr7.4:72621307-72621326 | MS.gene040450:CDS | 40.0% | |
| GGTTGGAACTTACGTGAAAT+GGG | + | chr7.4:72621085-72621104 | None:intergenic | 40.0% | |
| GTTTGAATTCGCGGTAAGTT+TGG | + | chr7.4:72622118-72622137 | None:intergenic | 40.0% | |
| TAACCTCGTCTGATGAGAAA+AGG | - | chr7.4:72623206-72623225 | MS.gene040450:intron | 40.0% | |
| TCTCAAAAGGAGGATACTTC+AGG | - | chr7.4:72623528-72623547 | MS.gene040450:intron | 40.0% | |
| TGTTGGAATGTGGTGTGTTT+GGG | + | chr7.4:72622907-72622926 | None:intergenic | 40.0% | |
| TTGGAATATGCTCCTCCTTA+AGG | - | chr7.4:72621679-72621698 | MS.gene040450:intron | 40.0% | |
| TTGTCAGAAGGTAGACCAAA+TGG | - | chr7.4:72623043-72623062 | MS.gene040450:intron | 40.0% | |
| TTGTTGGAATGTGGTGTGTT+TGG | + | chr7.4:72622908-72622927 | None:intergenic | 40.0% | |
| ! | AACCTTAATTTGGGTGGGTA+TGG | - | chr7.4:72621464-72621483 | MS.gene040450:intron | 40.0% |
| ! | CGTGAAATGGGTTTCCAAAA+CGG | + | chr7.4:72621073-72621092 | None:intergenic | 40.0% |
| ! | GGGCGTTTCTTTTTGTTGAA+GGG | + | chr7.4:72622887-72622906 | None:intergenic | 40.0% |
| ! | TACTTCAGGAATGATGGAAG+TGG | - | chr7.4:72623542-72623561 | MS.gene040450:intron | 40.0% |
| ! | TGGGCGTTTCTTTTTGTTGA+AGG | + | chr7.4:72622888-72622907 | None:intergenic | 40.0% |
| ! | TTAAGGAGGAGCATATTCCA+AGG | + | chr7.4:72621680-72621699 | None:intergenic | 40.0% |
| !! | ATGACATGCCTTTGGTGTTA+CGG | + | chr7.4:72623653-72623672 | None:intergenic | 40.0% |
| !! | GAAGTATCCTCCTTTTGAGA+AGG | + | chr7.4:72623528-72623547 | None:intergenic | 40.0% |
| AAGTCTTCTGTCCCATTGCT+GGG | - | chr7.4:72622258-72622277 | MS.gene040450:intron | 45.0% | |
| ACAAGAGAAGGAACAGCTTG+AGG | - | chr7.4:72621292-72621311 | MS.gene040450:CDS | 45.0% | |
| AGGGACAAATGACATGCCTT+TGG | + | chr7.4:72623661-72623680 | None:intergenic | 45.0% | |
| AGGTTACCGATAGCGAAGAA+AGG | + | chr7.4:72621115-72621134 | None:intergenic | 45.0% | |
| ATAAGGCGTGCTAATTTGGG+TGG | - | chr7.4:72621632-72621651 | MS.gene040450:intron | 45.0% | |
| ATGCTGAGCAAACGTGATGT+GGG | + | chr7.4:72622374-72622393 | None:intergenic | 45.0% | |
| CACCATACCCACCCAAATTA+AGG | + | chr7.4:72621469-72621488 | None:intergenic | 45.0% | |
| CGTCTGATGAGAAAAGGCTT+TGG | - | chr7.4:72623212-72623231 | MS.gene040450:intron | 45.0% | |
| CTCTGCCTTCAAAGAAACAC+AGG | - | chr7.4:72623481-72623500 | MS.gene040450:CDS | 45.0% | |
| GAATGTTTAGTGGAAGGGTG+CGG | - | chr7.4:72623372-72623391 | MS.gene040450:intron | 45.0% | |
| GGAAGTGGAAAATGCAGCTA+TGG | - | chr7.4:72623557-72623576 | MS.gene040450:intron | 45.0% | |
| GGAGGATACTTCAGGAATGA+TGG | - | chr7.4:72623536-72623555 | MS.gene040450:intron | 45.0% | |
| GGCTTATTCGACCTCAATCT+CGG | - | chr7.4:72621424-72621443 | MS.gene040450:intron | 45.0% | |
| GGGTTGGAACTTACGTGAAA+TGG | + | chr7.4:72621086-72621105 | None:intergenic | 45.0% | |
| GTCTCAGATTCGATTCTTCC+CGG | - | chr7.4:72621530-72621549 | MS.gene040450:intron | 45.0% | |
| TAAGGCGTGCTAATTTGGGT+GGG | - | chr7.4:72621633-72621652 | MS.gene040450:intron | 45.0% | |
| TAGTACACCCAAATTGGCAC+CGG | + | chr7.4:72621552-72621571 | None:intergenic | 45.0% | |
| TATGCTGAGCAAACGTGATG+TGG | + | chr7.4:72622375-72622394 | None:intergenic | 45.0% | |
| TCGAATCAGAGACCTTAAGG+AGG | + | chr7.4:72621694-72621713 | None:intergenic | 45.0% | |
| TGACAAGAAGTTCTCGTTCG+AGG | + | chr7.4:72621135-72621154 | None:intergenic | 45.0% | |
| TGAGGCCATGTTTGAATTCG+CGG | + | chr7.4:72622127-72622146 | None:intergenic | 45.0% | |
| TGTCTCTACAACCGAGATTG+AGG | + | chr7.4:72621438-72621457 | None:intergenic | 45.0% | |
| TTCCCAGTGTCAATTTGGGT+GGG | - | chr7.4:72621717-72621736 | MS.gene040450:intron | 45.0% | |
| TTTCAGGCAAAAGTTGCTCG+TGG | - | chr7.4:72622422-72622441 | MS.gene040450:CDS | 45.0% | |
| ! | AAGCCTTTTCTCATCAGACG+AGG | + | chr7.4:72623212-72623231 | None:intergenic | 45.0% |
| ! | ATTCTTCCCGGTGCCAATTT+GGG | - | chr7.4:72621542-72621561 | MS.gene040450:intron | 45.0% |
| ! | CTTAATTTGGGTGGGTATGG+TGG | - | chr7.4:72621467-72621486 | MS.gene040450:intron | 45.0% |
| ! | GAATCGAATCTGAGACCTTG+AGG | + | chr7.4:72621526-72621545 | None:intergenic | 45.0% |
| !! | GACTCTAGAACACACAGAAC+AGG | + | chr7.4:72622348-72622367 | None:intergenic | 45.0% |
| AAAGCTGATGGAGGAAGGAG+TGG | + | chr7.4:72623625-72623644 | None:intergenic | 50.0% | |
| ACTCCTTCCTCCATCAGCTT+TGG | - | chr7.4:72623624-72623643 | MS.gene040450:CDS | 50.0% | |
| AGCCCACCCAAATTGACACT+GGG | + | chr7.4:72621722-72621741 | None:intergenic | 50.0% | |
| AGTACACCCAAATTGGCACC+GGG | + | chr7.4:72621551-72621570 | None:intergenic | 50.0% | |
| AGTTGCTCGTGGCTATGACA+TGG | - | chr7.4:72622433-72622452 | MS.gene040450:CDS | 50.0% | |
| CGAAGAAAGGTGAATCGGGT+TGG | + | chr7.4:72621102-72621121 | None:intergenic | 50.0% | |
| CTTCCCAGTGTCAATTTGGG+TGG | - | chr7.4:72621716-72621735 | MS.gene040450:intron | 50.0% | |
| GAAGTCTTCTGTCCCATTGC+TGG | - | chr7.4:72622257-72622276 | MS.gene040450:intron | 50.0% | |
| GGGAGACTAGAGAGAGCTAT+AGG | - | chr7.4:72623092-72623111 | MS.gene040450:intron | 50.0% | |
| TAGCCCACCCAAATTGACAC+TGG | + | chr7.4:72621723-72621742 | None:intergenic | 50.0% | |
| TGCTGAGCAAACGTGATGTG+GGG | + | chr7.4:72622373-72622392 | None:intergenic | 50.0% | |
| TTTGGTCGCCGTAACACCAA+AGG | - | chr7.4:72623642-72623661 | MS.gene040450:CDS | 50.0% | |
| ! | AATCTGAGACCTTGAGGAGG+AGG | + | chr7.4:72621520-72621539 | None:intergenic | 50.0% |
| ! | ATCTGAGACCTTGAGGAGGA+GGG | + | chr7.4:72621519-72621538 | None:intergenic | 50.0% |
| ! | GATTCTTCCCGGTGCCAATT+TGG | - | chr7.4:72621541-72621560 | MS.gene040450:intron | 50.0% |
| ! | TCGAATCTGAGACCTTGAGG+AGG | + | chr7.4:72621523-72621542 | None:intergenic | 50.0% |
| CGACCAAAGCTGATGGAGGA+AGG | + | chr7.4:72623630-72623649 | None:intergenic | 55.0% | |
| CGCGGGAAGGGATCTAATTC+GGG | - | chr7.4:72623693-72623712 | MS.gene040450:CDS | 55.0% | |
| GAATATGCCCCTCCTCCTCA+AGG | - | chr7.4:72621508-72621527 | MS.gene040450:intron | 55.0% | |
| GCGCGGGAAGGGATCTAATT+CGG | - | chr7.4:72623692-72623711 | MS.gene040450:CDS | 55.0% | |
| GTTACGGCGACCAAAGCTGA+TGG | + | chr7.4:72623637-72623656 | None:intergenic | 55.0% | |
| TTCTGTCCCATTGCTGGGTG+TGG | - | chr7.4:72622263-72622282 | MS.gene040450:intron | 55.0% | |
| ! | AGGAGGAGGGGCATATTCCA+AGG | + | chr7.4:72621506-72621525 | None:intergenic | 55.0% |
| ! | TCTGAGACCTTGAGGAGGAG+GGG | + | chr7.4:72621518-72621537 | None:intergenic | 55.0% |
| ! | TTGGGTGGGTATGGTGGTGT+TGG | - | chr7.4:72621473-72621492 | MS.gene040450:intron | 55.0% |
| ACGGCGACCAAAGCTGATGG+AGG | + | chr7.4:72623634-72623653 | None:intergenic | 60.0% | |
| CGTGCTAATTTGGGTGGGCC+TGG | - | chr7.4:72621638-72621657 | MS.gene040450:intron | 60.0% | |
| GCTAATTTGGGTGGGCCTGG+TGG | - | chr7.4:72621641-72621660 | MS.gene040450:intron | 60.0% | |
| GTGGTGTTTGCTCGGGACCT+TGG | - | chr7.4:72621660-72621679 | MS.gene040450:intron | 60.0% | |
| ! | TGGGCCTGGTGGTGTTTGCT+CGG | - | chr7.4:72621652-72621671 | MS.gene040450:intron | 60.0% |
| !! | GTGGTGTTGGCTCGAGACCT+TGG | - | chr7.4:72621486-72621505 | MS.gene040450:intron | 60.0% |
| ACGCGCTCCACACCCAGCAA+TGG | + | chr7.4:72622273-72622292 | None:intergenic | 65.0% | |
| CGAGCTGTTCAGCGCGGGAA+GGG | - | chr7.4:72623681-72623700 | MS.gene040450:CDS | 65.0% | |
| CGCGCTCCACACCCAGCAAT+GGG | + | chr7.4:72622272-72622291 | None:intergenic | 65.0% | |
| GGTCCCGAGCAAACACCACC+AGG | + | chr7.4:72621659-72621678 | None:intergenic | 65.0% | |
| GTCCCTCGAGCTGTTCAGCG+CGG | - | chr7.4:72623675-72623694 | MS.gene040450:CDS | 65.0% | |
| TCCCGCGCTGAACAGCTCGA+GGG | + | chr7.4:72623680-72623699 | None:intergenic | 65.0% | |
| TCCCTCGAGCTGTTCAGCGC+GGG | - | chr7.4:72623676-72623695 | MS.gene040450:CDS | 65.0% | |
| TCGAGCTGTTCAGCGCGGGA+AGG | - | chr7.4:72623680-72623699 | MS.gene040450:CDS | 65.0% | |
| TGCTGGGTGTGGAGCGCGTT+TGG | - | chr7.4:72622274-72622293 | MS.gene040450:intron | 65.0% | |
| TTCCCGCGCTGAACAGCTCG+AGG | + | chr7.4:72623681-72623700 | None:intergenic | 65.0% | |
| ! | GGGCCTGGTGGTGTTTGCTC+GGG | - | chr7.4:72621653-72621672 | MS.gene040450:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.4 | gene | 72621034 | 72623737 | 72621034 | ID=MS.gene040450 |
| chr7.4 | mRNA | 72621034 | 72623737 | 72621034 | ID=MS.gene040450.t1;Parent=MS.gene040450 |
| chr7.4 | exon | 72623612 | 72623737 | 72623612 | ID=MS.gene040450.t1.exon1;Parent=MS.gene040450.t1 |
| chr7.4 | CDS | 72623612 | 72623737 | 72623612 | ID=cds.MS.gene040450.t1;Parent=MS.gene040450.t1 |
| chr7.4 | exon | 72623435 | 72623502 | 72623435 | ID=MS.gene040450.t1.exon2;Parent=MS.gene040450.t1 |
| chr7.4 | CDS | 72623435 | 72623502 | 72623435 | ID=cds.MS.gene040450.t1;Parent=MS.gene040450.t1 |
| chr7.4 | exon | 72622317 | 72622515 | 72622317 | ID=MS.gene040450.t1.exon3;Parent=MS.gene040450.t1 |
| chr7.4 | CDS | 72622317 | 72622515 | 72622317 | ID=cds.MS.gene040450.t1;Parent=MS.gene040450.t1 |
| chr7.4 | exon | 72621034 | 72621402 | 72621034 | ID=MS.gene040450.t1.exon4;Parent=MS.gene040450.t1 |
| chr7.4 | CDS | 72621034 | 72621402 | 72621034 | ID=cds.MS.gene040450.t1;Parent=MS.gene040450.t1 |
| Gene Sequence |
| Protein sequence |
