AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene040481

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 84 sgRNAs with CRISPR-Local

Find 139 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCAGAACGTGGCTAATTTC+TGG 0.218063 7.3:+71776774 MS.gene040481:CDS
TGTTCTTCCACCACTGGTAC+TGG 0.276664 7.3:-71776719 None:intergenic
AATTAGCCACGTTCTGAATC+TGG 0.296437 7.3:-71776769 None:intergenic
GAGTTGTGCGTATCATTAAT+TGG 0.316026 7.3:-71776653 None:intergenic
GAGGAACCTGCTTTCGATAT+TGG 0.318864 7.3:+71776806 MS.gene040481:CDS
AAATTTGCTCGGCGAGCATT+TGG 0.329497 7.3:+71777089 MS.gene040481:CDS
TTAAAACATGTGTCTCCAAC+TGG 0.380379 7.3:-71776898 None:intergenic
TTAGAGCACCATACCTGGTT+TGG 0.383982 7.3:-71775518 None:intergenic
CGATGTTGAATACCCTCCTT+TGG 0.387542 7.3:-71775487 None:intergenic
GATCATTATGAGCAACCATT+AGG 0.389483 7.3:+71776290 MS.gene040481:CDS
TAGAGCACCATACCTGGTTT+GGG 0.392335 7.3:-71775517 None:intergenic
CATTCCTGATGATGGTGATA+TGG 0.392491 7.3:+71776682 MS.gene040481:CDS
GATTGACCTATGACGATAAC+AGG 0.405299 7.3:+71776324 MS.gene040481:CDS
TCAGAACGTGGCTAATTTCT+GGG 0.416922 7.3:+71776775 MS.gene040481:CDS
GCTACCGCAGCGGCAGTTTG+TGG 0.431281 7.3:-71776746 None:intergenic
AATCGTAGGTTTAGACCTAA+TGG 0.433227 7.3:-71776305 None:intergenic
AATTTGCTCGGCGAGCATTT+GGG 0.441935 7.3:+71777090 MS.gene040481:CDS
AAACATCCTGTTATCGTCAT+AGG 0.443905 7.3:-71776330 None:intergenic
TATCATTAATTGGATTTGAC+GGG 0.451987 7.3:-71776643 None:intergenic
CGTTAGAGAGAACAGATTTG+TGG 0.458615 7.3:+71777238 MS.gene040481:CDS
TCCACCACTGGTACTGGGTC+AGG 0.460719 7.3:-71776713 None:intergenic
GTTCCACCGGGTTTCGAAGT+AGG 0.463343 7.3:+71776617 MS.gene040481:CDS
TCATACCACTTAATATCGAT+TGG 0.463682 7.3:-71777164 None:intergenic
GTTCTTCCACCACTGGTACT+GGG 0.464509 7.3:-71776718 None:intergenic
GCCTCACGTGTAGGACAGTT+GGG 0.468037 7.3:-71777298 None:intergenic
TTTAACGCTTTCTGCGTACA+TGG 0.478595 7.3:+71776916 MS.gene040481:CDS
GTATCATTAATTGGATTTGA+CGG 0.486076 7.3:-71776644 None:intergenic
TCATCCATGTCAAGAGTGAA+TGG 0.486104 7.3:-71776362 None:intergenic
CTCATCTCGGATCGTGATGA+AGG 0.492063 7.3:-71777126 None:intergenic
GGCTGCTATGGATGTCGAAA+TGG 0.496679 7.3:+71776841 MS.gene040481:CDS
TCTCCTCCCATTCCTGATGA+TGG 0.497542 7.3:+71776674 MS.gene040481:CDS
TTTATTTCCAGCAGTTCCAC+CGG 0.508663 7.3:+71776604 MS.gene040481:intron
ATTAGCCACGTTCTGAATCT+GGG 0.515846 7.3:-71776768 None:intergenic
TGATAATGAGGAGGCTGCTA+TGG 0.520057 7.3:+71776829 MS.gene040481:CDS
AGTATCCAATCGATATTAAG+TGG 0.520888 7.3:+71777159 MS.gene040481:CDS
TTTCGATATTGGTGATAATG+AGG 0.526872 7.3:+71776817 MS.gene040481:CDS
CATATCACCATCATCAGGAA+TGG 0.527318 7.3:-71776681 None:intergenic
TGCCTCACGTGTAGGACAGT+TGG 0.531796 7.3:-71777299 None:intergenic
AGCTTACGGCTCGTGTCCCA+TGG 0.534486 7.3:+71776132 MS.gene040481:intron
ACTGCCATATCACCATCATC+AGG 0.545324 7.3:-71776686 None:intergenic
GGCAGGTTGTTATAGTGTAA+AGG 0.546287 7.3:+71777318 MS.gene040481:CDS
ATATCACCATCATCAGGAAT+GGG 0.547188 7.3:-71776680 None:intergenic
TCTCGGATCGTGATGAAGGT+TGG 0.548455 7.3:-71777122 None:intergenic
TAAAACATGTGTCTCCAACT+GGG 0.552768 7.3:-71776897 None:intergenic
AACTGTCCTACACGTGAGGC+AGG 0.553198 7.3:+71777301 MS.gene040481:CDS
TTGTACCAGCAAAATTTGCT+CGG 0.557897 7.3:+71777078 MS.gene040481:CDS
ATTCACTCTTGACATGGATG+AGG 0.568212 7.3:+71776364 MS.gene040481:CDS
GCTTCCATTCACTCTTGACA+TGG 0.570881 7.3:+71776358 MS.gene040481:CDS
ACAGATTTGTGGAAGGCACA+AGG 0.581028 7.3:+71777249 MS.gene040481:CDS
TGACATGCAACCTTGAGCTA+TGG 0.582304 7.3:-71776415 None:intergenic
GTTGCTCATAATGATCAAGC+AGG 0.585077 7.3:-71776283 None:intergenic
AATACCGATGTAGCTTTATG+CGG 0.587466 7.3:-71777191 None:intergenic
TTATCACCAATATCGAAAGC+AGG 0.592587 7.3:-71776812 None:intergenic
TTATTTCCAGCAGTTCCACC+GGG 0.594229 7.3:+71776605 MS.gene040481:intron
CCACCGGGTTTCGAAGTAGG+AGG 0.598715 7.3:+71776620 MS.gene040481:CDS
TGCACATGGCAATCCCCAGT+TGG 0.598828 7.3:+71776883 MS.gene040481:CDS
AAAACATGTGTCTCCAACTG+GGG 0.599659 7.3:-71776896 None:intergenic
AGGTAACTAATCGTCAATTG+AGG 0.606077 7.3:+71776384 MS.gene040481:CDS
CATCGCGGTCAACCCAAACC+AGG 0.607211 7.3:+71775505 MS.gene040481:CDS
CGATATTGGTGATAATGAGG+AGG 0.613156 7.3:+71776820 MS.gene040481:CDS
TGTTCCTGACCCAGTACCAG+TGG 0.613436 7.3:+71776709 MS.gene040481:CDS
CAGATTTGTGGAAGGCACAA+GGG 0.620094 7.3:+71777250 MS.gene040481:CDS
ACTCACGGTGGAACTCATCT+CGG 0.624872 7.3:-71777139 None:intergenic
TATCGTCATAGGTCAATCGT+AGG 0.629235 7.3:-71776319 None:intergenic
TCCTGACCCAGTACCAGTGG+TGG 0.629390 7.3:+71776712 MS.gene040481:CDS
TAATATCGATTGGATACTCA+CGG 0.630661 7.3:-71777154 None:intergenic
TAACAACCTGCCTCACGTGT+AGG 0.635781 7.3:-71777307 None:intergenic
AGAGAGAACAGATTTGTGGA+AGG 0.635968 7.3:+71777242 MS.gene040481:CDS
TCACCATCATCAGGAATGGG+AGG 0.646579 7.3:-71776677 None:intergenic
TAATTTCTGGGATGATGATG+AGG 0.648095 7.3:+71776787 MS.gene040481:CDS
GGAACTATGACCATAGCTCA+AGG 0.651950 7.3:+71776405 MS.gene040481:CDS
ACCCAACTGTCCTACACGTG+AGG 0.654909 7.3:+71777297 MS.gene040481:CDS
AAATCCACAAACTGCCGCTG+CGG 0.654912 7.3:+71776742 MS.gene040481:CDS
AAAACCGCATAAAGCTACAT+CGG 0.665649 7.3:+71777187 MS.gene040481:CDS
CTGAATCTGGGCTACCGCAG+CGG 0.666979 7.3:-71776756 None:intergenic
TATGGATGTCGAAATGGATG+TGG 0.668180 7.3:+71776847 MS.gene040481:CDS
GGGCCTCCTACTTCGAAACC+CGG 0.671468 7.3:-71776623 None:intergenic
CATGGTGAAATGCAGCAACA+TGG 0.687154 7.3:+71776934 MS.gene040481:CDS
AATGGATGTGGTAGATGCTG+AGG 0.688566 7.3:+71776859 MS.gene040481:CDS
CCTCCTACTTCGAAACCCGG+TGG 0.702465 7.3:-71776620 None:intergenic
GGTAGCCCAGATTCAGAACG+TGG 0.706210 7.3:+71776763 MS.gene040481:CDS
GTAGATGCTGAGGATGCACA+TGG 0.739903 7.3:+71776869 MS.gene040481:CDS
AAGGAGGGTATTCAACATCG+CGG 0.764822 7.3:+71775490 MS.gene040481:CDS
TATCGATTGGATACTCACGG+TGG 0.816467 7.3:-71777151 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATGGTTTTTTTTTTAAATAA+GGG - chr7.3:71775877-71775896 None:intergenic 10.0%
!!! TATGGTTTTTTTTTTAAATA+AGG - chr7.3:71775878-71775897 None:intergenic 10.0%
!!! TTATAGATTTTCAATACTTT+TGG + chr7.3:71776074-71776093 MS.gene040481:intron 15.0%
!! CTTTATACAGTTATTTATTG+TGG + chr7.3:71776998-71777017 MS.gene040481:intron 20.0%
!! TATTGAAAATCTATAAGCAA+AGG - chr7.3:71776070-71776089 None:intergenic 20.0%
! ACACAACAAAATACAAAGAA+TGG - chr7.3:71775921-71775940 None:intergenic 25.0%
! ATAAATAACTGTATAAAGCG+TGG - chr7.3:71776996-71777015 None:intergenic 25.0%
! GTATCATTAATTGGATTTGA+CGG - chr7.3:71776647-71776666 None:intergenic 25.0%
! GTGTATGAGAAACAAAATTA+TGG - chr7.3:71775896-71775915 None:intergenic 25.0%
! TATCATTAATTGGATTTGAC+GGG - chr7.3:71776646-71776665 None:intergenic 25.0%
!!! TATTTTTACGAACGTTTCAA+AGG + chr7.3:71776155-71776174 MS.gene040481:CDS 25.0%
AAACGTTCGTAAAAATACCA+TGG - chr7.3:71776152-71776171 None:intergenic 30.0%
AACGTTCGTAAAAATACCAT+GGG - chr7.3:71776151-71776170 None:intergenic 30.0%
AGTATCCAATCGATATTAAG+TGG + chr7.3:71777159-71777178 MS.gene040481:CDS 30.0%
CCTTCAAAAAAGAGAAAAAC+TGG - chr7.3:71775969-71775988 None:intergenic 30.0%
GTCAAATAGAACATAGAGTT+TGG + chr7.3:71776177-71776196 MS.gene040481:intron 30.0%
GTTGTGTTGTGTCAAATAAA+TGG + chr7.3:71775934-71775953 MS.gene040481:intron 30.0%
TCATACCACTTAATATCGAT+TGG - chr7.3:71777167-71777186 None:intergenic 30.0%
TGTTTGTATTCTGTAGCTTA+CGG + chr7.3:71776118-71776137 MS.gene040481:intron 30.0%
! CAGCAGCATTAATTTGAAAT+TGG - chr7.3:71776526-71776545 None:intergenic 30.0%
! TAATATCGATTGGATACTCA+CGG - chr7.3:71777157-71777176 None:intergenic 30.0%
! TTTCGATATTGGTGATAATG+AGG + chr7.3:71776817-71776836 MS.gene040481:CDS 30.0%
!!! AGAACATAGAGTTTGGTTTT+AGG + chr7.3:71776184-71776203 MS.gene040481:intron 30.0%
!!! CCAGTTTTTCTCTTTTTTGA+AGG + chr7.3:71775966-71775985 MS.gene040481:intron 30.0%
AAAACCGCATAAAGCTACAT+CGG + chr7.3:71777187-71777206 MS.gene040481:CDS 35.0%
AAAATCTATAAGCAAAGGCG+AGG - chr7.3:71776065-71776084 None:intergenic 35.0%
AAACATCCTGTTATCGTCAT+AGG - chr7.3:71776333-71776352 None:intergenic 35.0%
AAATAAATCAGCAGCAGCAA+CGG - chr7.3:71776591-71776610 None:intergenic 35.0%
AAATCTATAAGCAAAGGCGA+GGG - chr7.3:71776064-71776083 None:intergenic 35.0%
AATCGTAGGTTTAGACCTAA+TGG - chr7.3:71776308-71776327 None:intergenic 35.0%
AATTAATGCTGCTGCTATTG+TGG + chr7.3:71776532-71776551 MS.gene040481:intron 35.0%
AGGTAACTAATCGTCAATTG+AGG + chr7.3:71776384-71776403 MS.gene040481:CDS 35.0%
ATATCACCATCATCAGGAAT+GGG - chr7.3:71776683-71776702 None:intergenic 35.0%
ATTAATGCTGCTGCTATTGT+GGG + chr7.3:71776533-71776552 MS.gene040481:intron 35.0%
GAGTTGTGCGTATCATTAAT+TGG - chr7.3:71776656-71776675 None:intergenic 35.0%
GATCATTATGAGCAACCATT+AGG + chr7.3:71776290-71776309 MS.gene040481:CDS 35.0%
TAAAACATGTGTCTCCAACT+GGG - chr7.3:71776900-71776919 None:intergenic 35.0%
TTAAAACATGTGTCTCCAAC+TGG - chr7.3:71776901-71776920 None:intergenic 35.0%
TTATCACCAATATCGAAAGC+AGG - chr7.3:71776815-71776834 None:intergenic 35.0%
! AAGCTACATCGGTATTTTTC+AGG + chr7.3:71777198-71777217 MS.gene040481:CDS 35.0%
! AGCATCGCATTTTGAATCAT+TGG - chr7.3:71775554-71775573 None:intergenic 35.0%
! AGCTACATCGGTATTTTTCA+GGG + chr7.3:71777199-71777218 MS.gene040481:CDS 35.0%
! TCTAGGTTTGGAGTATGTTA+CGG + chr7.3:71776218-71776237 MS.gene040481:intron 35.0%
! TTGTACCAGCAAAATTTGCT+CGG + chr7.3:71777078-71777097 MS.gene040481:CDS 35.0%
!! AATACCGATGTAGCTTTATG+CGG - chr7.3:71777194-71777213 None:intergenic 35.0%
!! TAATTTCTGGGATGATGATG+AGG + chr7.3:71776787-71776806 MS.gene040481:CDS 35.0%
!!! TTTGGTTTTAGGATACCAGA+GGG + chr7.3:71776195-71776214 MS.gene040481:intron 35.0%
AAAACATGTGTCTCCAACTG+GGG - chr7.3:71776899-71776918 None:intergenic 40.0%
AATGCAACATCCACCAGATA+TGG - chr7.3:71775623-71775642 None:intergenic 40.0%
AGAGAGAACAGATTTGTGGA+AGG + chr7.3:71777242-71777261 MS.gene040481:CDS 40.0%
ATTCACTCTTGACATGGATG+AGG + chr7.3:71776364-71776383 MS.gene040481:CDS 40.0%
CATATCACCATCATCAGGAA+TGG - chr7.3:71776684-71776703 None:intergenic 40.0%
CGTTAGAGAGAACAGATTTG+TGG + chr7.3:71777238-71777257 MS.gene040481:CDS 40.0%
GATTGACCTATGACGATAAC+AGG + chr7.3:71776324-71776343 MS.gene040481:CDS 40.0%
GTATGTTACGGAGAGATCAA+TGG + chr7.3:71776230-71776249 MS.gene040481:intron 40.0%
GTTGCTCATAATGATCAAGC+AGG - chr7.3:71776286-71776305 None:intergenic 40.0%
TATCGTCATAGGTCAATCGT+AGG - chr7.3:71776322-71776341 None:intergenic 40.0%
TATGGATGTCGAAATGGATG+TGG + chr7.3:71776847-71776866 MS.gene040481:CDS 40.0%
TCAGAACGTGGCTAATTTCT+GGG + chr7.3:71776775-71776794 MS.gene040481:CDS 40.0%
TCATCCATGTCAAGAGTGAA+TGG - chr7.3:71776365-71776384 None:intergenic 40.0%
TTCAGAACGTGGCTAATTTC+TGG + chr7.3:71776774-71776793 MS.gene040481:CDS 40.0%
TTTAACGCTTTCTGCGTACA+TGG + chr7.3:71776916-71776935 MS.gene040481:CDS 40.0%
TTTATTTCCAGCAGTTCCAC+CGG + chr7.3:71776604-71776623 MS.gene040481:intron 40.0%
! AATTAGCCACGTTCTGAATC+TGG - chr7.3:71776772-71776791 None:intergenic 40.0%
! ACCAGATATGGAAGTGTATC+GGG - chr7.3:71775611-71775630 None:intergenic 40.0%
! ATTAGCCACGTTCTGAATCT+GGG - chr7.3:71776771-71776790 None:intergenic 40.0%
! CACCAGATATGGAAGTGTAT+CGG - chr7.3:71775612-71775631 None:intergenic 40.0%
! CGATATTGGTGATAATGAGG+AGG + chr7.3:71776820-71776839 MS.gene040481:CDS 40.0%
!! CATTCCTGATGATGGTGATA+TGG + chr7.3:71776682-71776701 MS.gene040481:CDS 40.0%
!! TGCATGCATTGATTCATCAG+TGG + chr7.3:71775642-71775661 MS.gene040481:intron 40.0%
!!! ACATCGGTATTTTTCAGGGA+CGG + chr7.3:71777203-71777222 MS.gene040481:CDS 40.0%
!!! GTTTGGTTTTAGGATACCAG+AGG + chr7.3:71776194-71776213 MS.gene040481:intron 40.0%
AATGGATGTGGTAGATGCTG+AGG + chr7.3:71776859-71776878 MS.gene040481:CDS 45.0%
ACTGCCATATCACCATCATC+AGG - chr7.3:71776689-71776708 None:intergenic 45.0%
CATGGTGAAATGCAGCAACA+TGG + chr7.3:71776934-71776953 MS.gene040481:CDS 45.0%
CGATACACTTCCATATCTGG+TGG + chr7.3:71775610-71775629 MS.gene040481:intron 45.0%
CGATGTTGAATACCCTCCTT+TGG - chr7.3:71775490-71775509 None:intergenic 45.0%
GAGGAACCTGCTTTCGATAT+TGG + chr7.3:71776806-71776825 MS.gene040481:CDS 45.0%
GCTTCCATTCACTCTTGACA+TGG + chr7.3:71776358-71776377 MS.gene040481:CDS 45.0%
GGAACTATGACCATAGCTCA+AGG + chr7.3:71776405-71776424 MS.gene040481:CDS 45.0%
TCCCGATACACTTCCATATC+TGG + chr7.3:71775607-71775626 MS.gene040481:intron 45.0%
TCGTCTTCGTCATCTGATGA+TGG + chr7.3:71776500-71776519 MS.gene040481:intron 45.0%
TGACATGCAACCTTGAGCTA+TGG - chr7.3:71776418-71776437 None:intergenic 45.0%
TGTTACGGAGAGATCAATGG+CGG + chr7.3:71776233-71776252 MS.gene040481:intron 45.0%
TTATTTCCAGCAGTTCCACC+GGG + chr7.3:71776605-71776624 MS.gene040481:intron 45.0%
! AAATTTGCTCGGCGAGCATT+TGG + chr7.3:71777089-71777108 MS.gene040481:CDS 45.0%
! AATTTGCTCGGCGAGCATTT+GGG + chr7.3:71777090-71777109 MS.gene040481:CDS 45.0%
! ACAGATTTGTGGAAGGCACA+AGG + chr7.3:71777249-71777268 MS.gene040481:CDS 45.0%
! CAGATTTGTGGAAGGCACAA+GGG + chr7.3:71777250-71777269 MS.gene040481:CDS 45.0%
! GAAGATTAGAGCACCATACC+TGG - chr7.3:71775526-71775545 None:intergenic 45.0%
! GGATTTTGTTCTTCCACCAC+TGG - chr7.3:71776728-71776747 None:intergenic 45.0%
! TAGAGCACCATACCTGGTTT+GGG - chr7.3:71775520-71775539 None:intergenic 45.0%
! TATCGATTGGATACTCACGG+TGG - chr7.3:71777154-71777173 None:intergenic 45.0%
! TGATAATGAGGAGGCTGCTA+TGG + chr7.3:71776829-71776848 MS.gene040481:CDS 45.0%
! TTAGAGCACCATACCTGGTT+TGG - chr7.3:71775521-71775540 None:intergenic 45.0%
! TTTAGGATACCAGAGGGTCT+AGG + chr7.3:71776201-71776220 MS.gene040481:intron 45.0%
!! AAGGAGGGTATTCAACATCG+CGG + chr7.3:71775490-71775509 MS.gene040481:CDS 45.0%
!! GTTGCTGTTGGTGGTGATAA+TGG + chr7.3:71776563-71776582 MS.gene040481:intron 45.0%
!!! GGTATTTTTCAGGGACGGTT+GGG + chr7.3:71777208-71777227 MS.gene040481:CDS 45.0%
!!! GTATTTTTCAGGGACGGTTG+GGG + chr7.3:71777209-71777228 MS.gene040481:CDS 45.0%
AAATCCACAAACTGCCGCTG+CGG + chr7.3:71776742-71776761 MS.gene040481:CDS 50.0%
ACTCACGGTGGAACTCATCT+CGG - chr7.3:71777142-71777161 None:intergenic 50.0%
CTCATCTCGGATCGTGATGA+AGG - chr7.3:71777129-71777148 None:intergenic 50.0%
GATACCAGAGGGTCTAGGTT+TGG + chr7.3:71776206-71776225 MS.gene040481:intron 50.0%
GGCTGCTATGGATGTCGAAA+TGG + chr7.3:71776841-71776860 MS.gene040481:CDS 50.0%
GTAGATGCTGAGGATGCACA+TGG + chr7.3:71776869-71776888 MS.gene040481:CDS 50.0%
GTTCTTCCACCACTGGTACT+GGG - chr7.3:71776721-71776740 None:intergenic 50.0%
TAACAACCTGCCTCACGTGT+AGG - chr7.3:71777310-71777329 None:intergenic 50.0%
TACTCCAAACCTAGACCCTC+TGG - chr7.3:71776213-71776232 None:intergenic 50.0%
TCACCATCATCAGGAATGGG+AGG - chr7.3:71776680-71776699 None:intergenic 50.0%
TCTCCTCCCATTCCTGATGA+TGG + chr7.3:71776674-71776693 MS.gene040481:CDS 50.0%
TCTCGGATCGTGATGAAGGT+TGG - chr7.3:71777125-71777144 None:intergenic 50.0%
TGTTCTTCCACCACTGGTAC+TGG - chr7.3:71776722-71776741 None:intergenic 50.0%
!!! CGGTATTTTTCAGGGACGGT+TGG + chr7.3:71777207-71777226 MS.gene040481:CDS 50.0%
AACTGTCCTACACGTGAGGC+AGG + chr7.3:71777301-71777320 MS.gene040481:CDS 55.0%
ACCCAACTGTCCTACACGTG+AGG + chr7.3:71777297-71777316 MS.gene040481:CDS 55.0%
CGGTCAACCCAAACCAGGTA+TGG + chr7.3:71775510-71775529 MS.gene040481:intron 55.0%
GCCTCACGTGTAGGACAGTT+GGG - chr7.3:71777301-71777320 None:intergenic 55.0%
GCTGCTGCTATTGTGGGTTC+TGG + chr7.3:71776539-71776558 MS.gene040481:intron 55.0%
GGCGGTGGTTGCTTCTATTC+AGG + chr7.3:71776251-71776270 MS.gene040481:intron 55.0%
GGTAGCCCAGATTCAGAACG+TGG + chr7.3:71776763-71776782 MS.gene040481:CDS 55.0%
GTTCCACCGGGTTTCGAAGT+AGG + chr7.3:71776617-71776636 MS.gene040481:CDS 55.0%
TACGGAGAGATCAATGGCGG+TGG + chr7.3:71776236-71776255 MS.gene040481:intron 55.0%
TGCACATGGCAATCCCCAGT+TGG + chr7.3:71776883-71776902 MS.gene040481:CDS 55.0%
TGCCTCACGTGTAGGACAGT+TGG - chr7.3:71777302-71777321 None:intergenic 55.0%
TGTTCCTGACCCAGTACCAG+TGG + chr7.3:71776709-71776728 MS.gene040481:CDS 55.0%
! GCTCGCCGAGCAAATTTTGC+TGG - chr7.3:71777086-71777105 None:intergenic 55.0%
!! GGTTCTGGTGTTGCTGTTGG+TGG + chr7.3:71776554-71776573 MS.gene040481:intron 55.0%
!! GTGGGTTCTGGTGTTGCTGT+TGG + chr7.3:71776551-71776570 MS.gene040481:intron 55.0%
AGCTTACGGCTCGTGTCCCA+TGG + chr7.3:71776132-71776151 MS.gene040481:intron 60.0%
CATCGCGGTCAACCCAAACC+AGG + chr7.3:71775505-71775524 MS.gene040481:CDS 60.0%
CCACCGGGTTTCGAAGTAGG+AGG + chr7.3:71776620-71776639 MS.gene040481:CDS 60.0%
CCTCCTACTTCGAAACCCGG+TGG - chr7.3:71776623-71776642 None:intergenic 60.0%
CTGAATCTGGGCTACCGCAG+CGG - chr7.3:71776759-71776778 None:intergenic 60.0%
GGGCCTCCTACTTCGAAACC+CGG - chr7.3:71776626-71776645 None:intergenic 60.0%
TCCTGACCCAGTACCAGTGG+TGG + chr7.3:71776712-71776731 MS.gene040481:CDS 60.0%
TCGAAACCCGGTGGAACTGC+TGG - chr7.3:71776614-71776633 None:intergenic 60.0%
! TCCACCACTGGTACTGGGTC+AGG - chr7.3:71776716-71776735 None:intergenic 60.0%
GCTACCGCAGCGGCAGTTTG+TGG - chr7.3:71776749-71776768 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr7.3 gene 71775479 71777337 71775479 ID=MS.gene040481
chr7.3 mRNA 71775479 71777337 71775479 ID=MS.gene040481.t1;Parent=MS.gene040481
chr7.3 exon 71775479 71775526 71775479 ID=MS.gene040481.t1.exon1;Parent=MS.gene040481.t1
chr7.3 CDS 71775479 71775526 71775479 ID=cds.MS.gene040481.t1;Parent=MS.gene040481.t1
chr7.3 exon 71776134 71776176 71776134 ID=MS.gene040481.t1.exon2;Parent=MS.gene040481.t1
chr7.3 CDS 71776134 71776176 71776134 ID=cds.MS.gene040481.t1;Parent=MS.gene040481.t1
chr7.3 exon 71776273 71776449 71776273 ID=MS.gene040481.t1.exon3;Parent=MS.gene040481.t1
chr7.3 CDS 71776273 71776449 71776273 ID=cds.MS.gene040481.t1;Parent=MS.gene040481.t1
chr7.3 exon 71776615 71776955 71776615 ID=MS.gene040481.t1.exon4;Parent=MS.gene040481.t1
chr7.3 CDS 71776615 71776955 71776615 ID=cds.MS.gene040481.t1;Parent=MS.gene040481.t1
chr7.3 exon 71777077 71777337 71777077 ID=MS.gene040481.t1.exon5;Parent=MS.gene040481.t1
chr7.3 CDS 71777077 71777337 71777077 ID=cds.MS.gene040481.t1;Parent=MS.gene040481.t1
Gene Sequence

>MS.gene040481

ATGGTTTTCCAAAGGAGGGTATTCAACATCGCGGTCAACCCAAACCAGGTATGGTGCTCTAATCTTCAACAACCAATGATTCAAAATGCGATGCTAAAAAGTTCTTCAGAATGATTGTTTTTTTTGTTTCCCGATACACTTCCATATCTGGTGGATGTTGCATTGCATGCATTGATTCATCAGTGGCACAGTATATTGATGACTCTGATTATGTTATTTTTTATTTCTGTTTTTTTTTCTTCTTAAATACAGATTGTTCAATATTGTAGTTGTAGATTGCATGCATTGATTCATCAGTGGCTCAGTATATTGATGACTCTGATTATGTTATTTATTTTTTCTTTTTTTTATTTTGTTTCTTAAATACATATTGTTCAATGTTGTAGTTGTAGATTCCCTTATTTAAAAAAAAAACCATAATTTTGTTTCTCATACACTTCCATTCTTTGTATTTTGTTGTGTTGTGTCAAATAAATGGTTATAATTACCAGTTTTTCTCTTTTTTGAAGGATTATTACTAGTTTTGTATTGCTCTTATTTTTTGTATAATTTCTTCGAAAAACACAACATTAAATAATAATACCCTCGCCTTTGCTTATAGATTTTCAATACTTTTGGTTGTAAACATACTGTTGTTGTTGTTTGTATTCTGTAGCTTACGGCTCGTGTCCCATGGTATTTTTACGAACGTTTCAAAGGTCAAATAGAACATAGAGTTTGGTTTTAGGATACCAGAGGGTCTAGGTTTGGAGTATGTTACGGAGAGATCAATGGCGGTGGTTGCTTCTATTCAGGTCTTCAGAACCTGCTTGATCATTATGAGCAACCATTAGGTCTAAACCTACGATTGACCTATGACGATAACAGGATGTTTCATATGCTTCCATTCACTCTTGACATGGATGAGGTAACTAATCGTCAATTGAGGAACTATGACCATAGCTCAAGGTTGCATGTCAATGAGTTTCTGCGTACATTTAGATACTTTGATTCTGACTCATTTTCGTCTTCGTCTTCGTCTTCGTCTTCGTCATCTGATGATGGCCAATTTCAAATTAATGCTGCTGCTATTGTGGGTTCTGGTGTTGCTGTTGGTGGTGATAATGGTGCCGTTGCTGCTGCTGATTTATTTCCAGCAGTTCCACCGGGTTTCGAAGTAGGAGGCCCGTCAAATCCAATTAATGATACGCACAACTCTCCTCCCATTCCTGATGATGGTGATATGGCAGTTGTTCCTGACCCAGTACCAGTGGTGGAAGAACAAAATCCACAAACTGCCGCTGCGGTAGCCCAGATTCAGAACGTGGCTAATTTCTGGGATGATGATGAGGAACCTGCTTTCGATATTGGTGATAATGAGGAGGCTGCTATGGATGTCGAAATGGATGTGGTAGATGCTGAGGATGCACATGGCAATCCCCAGTTGGAGACACATGTTTTAACGCTTTCTGCGTACATGGTGAAATGCAGCAACATGGTGAGTTACTTTGAAAAAATAAAAAAAAAAAACATATCCACGCTTTATACAGTTATTTATTGTGGTTTGACAAGTGTGTGACTGTTGACATGAATTAATTATTGTTATCTGTCAACTGCAGCTTGTACCAGCAAAATTTGCTCGGCGAGCATTTGGGAATACAAGACCAACCTTCATCACGATCCGAGATGAGTTCCACCGTGAGTATCCAATCGATATTAAGTGGTATGAAAAACCGCATAAAGCTACATCGGTATTTTTCAGGGACGGTTGGGGTGAATTCGTTAGAGAGAACAGATTTGTGGAAGGCACAAGGGTGTTGCTCACTTTAAACAAGACTAACCCAACTGTCCTACACGTGAGGCAGGTTGTTATAGTGTAA
Protein sequence

>MS.gene040481.t1

MVFQRRVFNIAVNPNQLTARVPWYFYERFKGLQNLLDHYEQPLGLNLRLTYDDNRMFHMLPFTLDMDEVTNRQLRNYDHSSRLHVNEFLPVPPGFEVGGPSNPINDTHNSPPIPDDGDMAVVPDPVPVVEEQNPQTAAAVAQIQNVANFWDDDEEPAFDIGDNEEAAMDVEMDVVDAEDAHGNPQLETHVLTLSAYMVKCSNMLVPAKFARRAFGNTRPTFITIRDEFHREYPIDIKWYEKPHKATSVFFRDGWGEFVRENRFVEGTRVLLTLNKTNPTVLHVRQVVIV