Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene040490.t1 | PNX89523.1 | 40 | 85 | 51 | 0 | 17 | 101 | 11 | 95 | 5.50E-08 | 68.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene040490.t1 | A0A2K3MFE8 | 40.0 | 85 | 51 | 0 | 17 | 101 | 11 | 95 | 4.0e-08 | 68.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene040490.t1 | TF | B3 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 115 sgRNAs with CRISPR-Local
Find 157 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATTATGTGGAGGCAGATTT+TGG | 0.154317 | 7.3:+71831146 | None:intergenic |
| TTCCTCCGGCGGCATTTCTC+AGG | 0.275496 | 7.3:-71830657 | MS.gene040490:CDS |
| AGATTTGTTGCACGAGTGTT+TGG | 0.301888 | 7.3:-71830766 | MS.gene040490:CDS |
| CCTGATTGCTGCCGAGATAC+TGG | 0.331416 | 7.3:-71831392 | MS.gene040490:CDS |
| TTCGGGATGAGGAGGAGAAT+TGG | 0.336432 | 7.3:+71831210 | None:intergenic |
| ACTCGTGCAACAAATCTTCT+TGG | 0.342234 | 7.3:+71830772 | None:intergenic |
| GGTGGGAATGTGGCTAATAA+TGG | 0.350488 | 7.3:-71830962 | MS.gene040490:CDS |
| TTATAGGCTAAGGAGTTTGC+TGG | 0.351140 | 7.3:-71831551 | MS.gene040490:CDS |
| TAAGACACACTTACCTTGTC+TGG | 0.362065 | 7.3:+71832377 | None:intergenic |
| TTCAACTCCTGTGGCAGAAC+CGG | 0.369949 | 7.3:-71831257 | MS.gene040490:CDS |
| TCCCTAGCATACATAACATA+TGG | 0.379144 | 7.3:+71830556 | None:intergenic |
| GACACAAGAGGTTCGAGGTT+TGG | 0.386987 | 7.3:-71831610 | MS.gene040490:CDS |
| TCATGGCCGCGCTTACATTC+AGG | 0.392786 | 7.3:-71832421 | MS.gene040490:CDS |
| TGGCAGTTGGGAAAAGTGTT+AGG | 0.397181 | 7.3:-71830600 | MS.gene040490:CDS |
| GACGATGATTTCATCGATCT+TGG | 0.397876 | 7.3:-71831313 | MS.gene040490:CDS |
| GGCATTGTGTGGTTGTTGAT+TGG | 0.403874 | 7.3:+71831177 | None:intergenic |
| TGATTGGCATCATGAACTTC+GGG | 0.411728 | 7.3:+71831193 | None:intergenic |
| TCCTCCGGCGGCATTTCTCA+GGG | 0.436877 | 7.3:-71830656 | MS.gene040490:CDS |
| CGGACAGGGGCTGTTCTACA+TGG | 0.447788 | 7.3:-71831482 | MS.gene040490:CDS |
| TCGGGATGAGGAGGAGAATT+GGG | 0.451241 | 7.3:+71831211 | None:intergenic |
| GATTTGTTGCACGAGTGTTT+GGG | 0.452697 | 7.3:-71830765 | MS.gene040490:CDS |
| GTGGGAATGTGGCTAATAAT+GGG | 0.456886 | 7.3:-71830961 | MS.gene040490:CDS |
| CCAGTATCTCGGCAGCAATC+AGG | 0.457630 | 7.3:+71831392 | None:intergenic |
| ATCGTCGTCGCTGTCTTCAT+CGG | 0.461921 | 7.3:+71831330 | None:intergenic |
| GAGCACTTCCACCAGCCGTT+AGG | 0.466631 | 7.3:-71831529 | MS.gene040490:CDS |
| CGAGATACTGGATCCCTTGG+AGG | 0.468114 | 7.3:-71831380 | MS.gene040490:CDS |
| ACATCAACATCCGCTGGATC+CGG | 0.472816 | 7.3:+71831238 | None:intergenic |
| TTGATTGGCATCATGAACTT+CGG | 0.473733 | 7.3:+71831192 | None:intergenic |
| ATGAACTACGACACAGAGTC+TGG | 0.481562 | 7.3:-71831639 | MS.gene040490:CDS |
| CGGAGAACCAGCTGGCAGTT+GGG | 0.484647 | 7.3:-71830612 | MS.gene040490:CDS |
| ACAGGAGTTGAAGGAGGTGC+AGG | 0.491094 | 7.3:+71831268 | None:intergenic |
| CATGGTGAAGACTAGCAATC+TGG | 0.491937 | 7.3:-71830903 | MS.gene040490:intron |
| GCTGGATCCGGTTCTGCCAC+AGG | 0.493035 | 7.3:+71831250 | None:intergenic |
| GGACAGAGGCCATCTTCCTC+CGG | 0.503311 | 7.3:-71830671 | MS.gene040490:CDS |
| CGGCGGCATTTCTCAGGGGC+GGG | 0.503464 | 7.3:-71830651 | MS.gene040490:CDS |
| TGGGCTTTGACTTTCCGTGC+AGG | 0.505024 | 7.3:-71830705 | MS.gene040490:CDS |
| ACGGAGAACCAGCTGGCAGT+TGG | 0.509821 | 7.3:-71830613 | MS.gene040490:CDS |
| CCCTAGCATACATAACATAT+GGG | 0.511261 | 7.3:+71830557 | None:intergenic |
| GCATCATGAACTTCGGGATG+AGG | 0.512150 | 7.3:+71831199 | None:intergenic |
| GGTTCTGCCACAGGAGTTGA+AGG | 0.512252 | 7.3:+71831259 | None:intergenic |
| GCAAAATCAAAGAAATTATG+TGG | 0.521917 | 7.3:+71831133 | None:intergenic |
| TGCCGAGATACTGGATCCCT+TGG | 0.522650 | 7.3:-71831383 | MS.gene040490:CDS |
| TCATACTTCAACAACCACTT+TGG | 0.525804 | 7.3:-71831664 | MS.gene040490:CDS |
| ACCCATATGTTATGTATGCT+AGG | 0.529159 | 7.3:-71830558 | MS.gene040490:CDS |
| CGGCATTTCTCAGGGGCGGG+TGG | 0.532162 | 7.3:-71830648 | MS.gene040490:CDS |
| GTATGCTAGGGAAGCTCGGA+TGG | 0.537149 | 7.3:-71830545 | MS.gene040490:CDS |
| GCGTCTAAGTTACAACGGAC+AGG | 0.542298 | 7.3:-71831497 | MS.gene040490:CDS |
| CATCCTACTTACAGATGCCA+TGG | 0.546268 | 7.3:-71830725 | MS.gene040490:CDS |
| CCGGCGGCATTTCTCAGGGG+CGG | 0.554229 | 7.3:-71830652 | MS.gene040490:CDS |
| ATCTTCATCGTTGATATCCA+TGG | 0.554841 | 7.3:+71831105 | None:intergenic |
| CCCATATGTTATGTATGCTA+GGG | 0.556719 | 7.3:-71830557 | MS.gene040490:CDS |
| ACTCGACATGACCGAGCTAA+CGG | 0.557804 | 7.3:-71831449 | MS.gene040490:CDS |
| CTCCAAGGGATCCAGTATCT+CGG | 0.558445 | 7.3:+71831381 | None:intergenic |
| TAGAAGACACAAGAGGTTCG+AGG | 0.561323 | 7.3:-71831615 | MS.gene040490:CDS |
| TGTGGCTAATAATGGGAGAG+TGG | 0.562385 | 7.3:-71830954 | MS.gene040490:CDS |
| TCATAGGAAGTGATGGGACG+CGG | 0.562900 | 7.3:-71831582 | MS.gene040490:CDS |
| TCCTTCCACTTGATCCTGCA+CGG | 0.565208 | 7.3:+71830691 | None:intergenic |
| TGCACCTCCTTCAACTCCTG+TGG | 0.569911 | 7.3:-71831266 | MS.gene040490:CDS |
| GGTGCAACATCAACATCCGC+TGG | 0.570592 | 7.3:+71831232 | None:intergenic |
| GTATAATTCATACTCCTCCA+AGG | 0.570762 | 7.3:+71831366 | None:intergenic |
| TTATGTATGCTAGGGAAGCT+CGG | 0.572454 | 7.3:-71830549 | MS.gene040490:CDS |
| GGCATCTGTAAGTAGGATGG+TGG | 0.575659 | 7.3:+71830729 | None:intergenic |
| CGTCTAAGTTACAACGGACA+GGG | 0.576116 | 7.3:-71831496 | MS.gene040490:CDS |
| GGTGAAAACATGGGTGCAGG+TGG | 0.578164 | 7.3:-71830980 | MS.gene040490:CDS |
| ACTTTCCGTGCAGGATCAAG+TGG | 0.580280 | 7.3:-71830696 | MS.gene040490:CDS |
| GAAATGCCGCCGGAGGAAGA+TGG | 0.581201 | 7.3:+71830662 | None:intergenic |
| CATGGGTGCAGGTGGGAATG+TGG | 0.582106 | 7.3:-71830972 | MS.gene040490:CDS |
| CCTCTCACGAACCGTTAGCT+CGG | 0.586517 | 7.3:+71831438 | None:intergenic |
| CCGAGCTAACGGTTCGTGAG+AGG | 0.592918 | 7.3:-71831438 | MS.gene040490:CDS |
| GGAGTTGAAGGAGGTGCAGG+AGG | 0.594963 | 7.3:+71831271 | None:intergenic |
| GGGTAACAATGGTGAAAACA+TGG | 0.597431 | 7.3:-71830990 | MS.gene040490:CDS |
| TGTGGCAGAACCGGATCCAG+CGG | 0.598738 | 7.3:-71831248 | MS.gene040490:CDS |
| TCATGAACTTCGGGATGAGG+AGG | 0.603718 | 7.3:+71831202 | None:intergenic |
| CCCCTGAGAAATGCCGCCGG+AGG | 0.604022 | 7.3:+71830655 | None:intergenic |
| CATGGCATCTGTAAGTAGGA+TGG | 0.604155 | 7.3:+71830726 | None:intergenic |
| GTGCAACAAATCTTCTTGGT+AGG | 0.604465 | 7.3:+71830776 | None:intergenic |
| GCAGTATGAGACCTAACGGC+TGG | 0.608111 | 7.3:+71831518 | None:intergenic |
| AGCCCATGGCATCTGTAAGT+AGG | 0.608677 | 7.3:+71830722 | None:intergenic |
| GCTGGTAACAACAATGGTGA+TGG | 0.608883 | 7.3:-71831061 | MS.gene040490:CDS |
| CACAACAATCGATCCAGACA+AGG | 0.610416 | 7.3:-71832390 | MS.gene040490:intron |
| ATCTCGGCAGCAATCAGGAA+AGG | 0.610893 | 7.3:+71831397 | None:intergenic |
| ATCCTACTTACAGATGCCAT+GGG | 0.611432 | 7.3:-71830724 | MS.gene040490:CDS |
| TGTCAGACTTGCAGAATACA+TGG | 0.612787 | 7.3:-71830921 | MS.gene040490:CDS |
| CAGAGGCCATCTTCCTCCGG+CGG | 0.613392 | 7.3:-71830668 | MS.gene040490:CDS |
| GGATATCAACGATGAAGATG+TGG | 0.616665 | 7.3:-71831101 | MS.gene040490:CDS |
| TATAATTCATACTCCTCCAA+GGG | 0.616989 | 7.3:+71831367 | None:intergenic |
| GTATGAGACCTAACGGCTGG+TGG | 0.617542 | 7.3:+71831521 | None:intergenic |
| AATGGTGAAAACATGGGTGC+AGG | 0.619307 | 7.3:-71830983 | MS.gene040490:CDS |
| CCTCCGGCGGCATTTCTCAG+GGG | 0.623483 | 7.3:-71830655 | MS.gene040490:CDS |
| CCGCCCCTGAGAAATGCCGC+CGG | 0.627703 | 7.3:+71830652 | None:intergenic |
| GCATCTGTAAGTAGGATGGT+GGG | 0.632206 | 7.3:+71830730 | None:intergenic |
| GCTGCTGCCATGGGTAACAA+TGG | 0.634927 | 7.3:-71831001 | MS.gene040490:CDS |
| GCACGGAAAGTCAAAGCCCA+TGG | 0.634938 | 7.3:+71830708 | None:intergenic |
| TCCGTGCAGGATCAAGTGGA+AGG | 0.637315 | 7.3:-71830692 | MS.gene040490:CDS |
| TGGGCATCATCGGCATTGTG+TGG | 0.641687 | 7.3:+71831166 | None:intergenic |
| GTCGTAGTTCATCACCAAAG+TGG | 0.648562 | 7.3:+71831650 | None:intergenic |
| AGACGCAGTATGAGACCTAA+CGG | 0.653534 | 7.3:+71831514 | None:intergenic |
| TCGGCAGCAATCAGGAAAGG+AGG | 0.654636 | 7.3:+71831400 | None:intergenic |
| GCAGCATCAAAGAAGTTATG+CGG | 0.656305 | 7.3:+71831025 | None:intergenic |
| GAAGGTATAGACAATGCTGC+TGG | 0.657055 | 7.3:-71831079 | MS.gene040490:CDS |
| GGACAGGGGCTGTTCTACAT+GGG | 0.657468 | 7.3:-71831481 | MS.gene040490:CDS |
| GAACTTCCTGAATGTAAGCG+CGG | 0.670661 | 7.3:+71832415 | None:intergenic |
| GTGAAAACATGGGTGCAGGT+GGG | 0.671071 | 7.3:-71830979 | MS.gene040490:CDS |
| GCTGTCTTCATCGGATGACG+AGG | 0.673509 | 7.3:+71831339 | None:intergenic |
| AAATCAAAGAAATTATGTGG+AGG | 0.678727 | 7.3:+71831136 | None:intergenic |
| GCATCAAAGAAGTTATGCGG+AGG | 0.686757 | 7.3:+71831028 | None:intergenic |
| AGGATCAAGTGGAAGGACAG+AGG | 0.686964 | 7.3:-71830685 | MS.gene040490:CDS |
| GTCTGGTTAGAAGACACAAG+AGG | 0.687596 | 7.3:-71831622 | MS.gene040490:CDS |
| ATCAACGATGAAGATGTGGA+AGG | 0.687890 | 7.3:-71831097 | MS.gene040490:CDS |
| ATACTGCGTCTAAGTTACAA+CGG | 0.691908 | 7.3:-71831502 | MS.gene040490:CDS |
| TCTGCCACAGGAGTTGAAGG+AGG | 0.696157 | 7.3:+71831262 | None:intergenic |
| TCTGTAAGTAGGATGGTGGG+CGG | 0.704271 | 7.3:+71830733 | None:intergenic |
| GTCTAAGTTACAACGGACAG+GGG | 0.730281 | 7.3:-71831495 | MS.gene040490:CDS |
| GGTAACAATGGTGAAAACAT+GGG | 0.742892 | 7.3:-71830989 | MS.gene040490:CDS |
| AATGCTGCTGGTAACAACAA+TGG | 0.748660 | 7.3:-71831067 | MS.gene040490:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAATGATAACAATTTAAAAT+AGG | + | chr7.3:71832150-71832169 | None:intergenic | 10.0% |
| !! | AATTATTTAAAAAAGAACAC+AGG | - | chr7.3:71831172-71831191 | MS.gene040490:CDS | 15.0% |
| !!! | AATTACTGTTATATAGTTTT+TGG | - | chr7.3:71832109-71832128 | MS.gene040490:intron | 15.0% |
| ! | AAATCAAAGAAATTATGTGG+AGG | + | chr7.3:71831823-71831842 | None:intergenic | 25.0% |
| ! | AGTACACAAAATCTTAGATA+CGG | + | chr7.3:71830832-71830851 | None:intergenic | 25.0% |
| ! | GCAAAATCAAAGAAATTATG+TGG | + | chr7.3:71831826-71831845 | None:intergenic | 25.0% |
| !! | TTGTTATTAAACTTTGAGTG+TGG | - | chr7.3:71830616-71830635 | MS.gene040490:CDS | 25.0% |
| !!! | CATTTGTTGTTACATGTTTA+AGG | - | chr7.3:71830719-71830738 | MS.gene040490:CDS | 25.0% |
| AAATATATTGCAGAGTGACA+AGG | + | chr7.3:71830915-71830934 | None:intergenic | 30.0% | |
| ACTCCTTAGCCTATAAAAAA+AGG | + | chr7.3:71831401-71831420 | None:intergenic | 30.0% | |
| AGTACACATTATCGTAGATA+CGG | + | chr7.3:71831019-71831038 | None:intergenic | 30.0% | |
| TATAATTCATACTCCTCCAA+GGG | + | chr7.3:71831592-71831611 | None:intergenic | 30.0% | |
| AAAATCTACCGGATACGAAA+AGG | + | chr7.3:71830690-71830709 | None:intergenic | 35.0% | |
| AAATCTACCGGATACGAAAA+GGG | + | chr7.3:71830689-71830708 | None:intergenic | 35.0% | |
| ACCCATATGTTATGTATGCT+AGG | - | chr7.3:71832398-71832417 | MS.gene040490:CDS | 35.0% | |
| ATACTGCGTCTAAGTTACAA+CGG | - | chr7.3:71831454-71831473 | MS.gene040490:CDS | 35.0% | |
| ATCTTCATCGTTGATATCCA+TGG | + | chr7.3:71831854-71831873 | None:intergenic | 35.0% | |
| ATTACAGAGTGACAACAAAC+AGG | + | chr7.3:71830876-71830895 | None:intergenic | 35.0% | |
| ATTACAGAGTGACAACAAAC+TGG | + | chr7.3:71830876-71830895 | None:intergenic | 35.0% | |
| CCCATATGTTATGTATGCTA+GGG | - | chr7.3:71832399-71832418 | MS.gene040490:CDS | 35.0% | |
| CCCTAGCATACATAACATAT+GGG | + | chr7.3:71832402-71832421 | None:intergenic | 35.0% | |
| GGTAACAATGGTGAAAACAT+GGG | - | chr7.3:71831967-71831986 | MS.gene040490:intron | 35.0% | |
| GTATAATTCATACTCCTCCA+AGG | + | chr7.3:71831593-71831612 | None:intergenic | 35.0% | |
| TCATACTTCAACAACCACTT+TGG | - | chr7.3:71831292-71831311 | MS.gene040490:CDS | 35.0% | |
| TCCCTAGCATACATAACATA+TGG | + | chr7.3:71832403-71832422 | None:intergenic | 35.0% | |
| TTACAGAGTGACAACAAACT+GGG | + | chr7.3:71831062-71831081 | None:intergenic | 35.0% | |
| TTCTTGTGTGTGCATAATAG+TGG | + | chr7.3:71830808-71830827 | None:intergenic | 35.0% | |
| TTGATTGGCATCATGAACTT+CGG | + | chr7.3:71831767-71831786 | None:intergenic | 35.0% | |
| TTTACAGAGTGACATCAAAC+TGG | + | chr7.3:71831101-71831120 | None:intergenic | 35.0% | |
| ! | AATTATGTGGAGGCAGATTT+TGG | + | chr7.3:71831813-71831832 | None:intergenic | 35.0% |
| ! | ATTATGTGGAGGCAGATTTT+GGG | + | chr7.3:71831812-71831831 | None:intergenic | 35.0% |
| ! | GAAGTTGTCACTTGTAATGT+AGG | - | chr7.3:71831252-71831271 | MS.gene040490:CDS | 35.0% |
| ! | GTGTTTTCATAGGAAGTGAT+GGG | - | chr7.3:71831368-71831387 | MS.gene040490:CDS | 35.0% |
| !!! | GGACCTTTTTTTATAGGCTA+AGG | - | chr7.3:71831395-71831414 | MS.gene040490:CDS | 35.0% |
| AACCAACAAGAAGGCAAACA+TGG | + | chr7.3:71830941-71830960 | None:intergenic | 40.0% | |
| AATGCTGCTGGTAACAACAA+TGG | - | chr7.3:71831889-71831908 | MS.gene040490:intron | 40.0% | |
| ACTCGTGCAACAAATCTTCT+TGG | + | chr7.3:71832187-71832206 | None:intergenic | 40.0% | |
| ATCAACGATGAAGATGTGGA+AGG | - | chr7.3:71831859-71831878 | MS.gene040490:intron | 40.0% | |
| ATCCTACTTACAGATGCCAT+GGG | - | chr7.3:71832232-71832251 | MS.gene040490:intron | 40.0% | |
| ATGTTTGCCTTCTTGTTGGT+TGG | - | chr7.3:71830940-71830959 | MS.gene040490:CDS | 40.0% | |
| GACGATGATTTCATCGATCT+TGG | - | chr7.3:71831643-71831662 | MS.gene040490:CDS | 40.0% | |
| GCAGCATCAAAGAAGTTATG+CGG | + | chr7.3:71831934-71831953 | None:intergenic | 40.0% | |
| GGATATCAACGATGAAGATG+TGG | - | chr7.3:71831855-71831874 | MS.gene040490:intron | 40.0% | |
| GGGTAACAATGGTGAAAACA+TGG | - | chr7.3:71831966-71831985 | MS.gene040490:intron | 40.0% | |
| GTCACTTGTAATGTAGGATG+AGG | - | chr7.3:71831258-71831277 | MS.gene040490:CDS | 40.0% | |
| GTGCAACAAATCTTCTTGGT+AGG | + | chr7.3:71832183-71832202 | None:intergenic | 40.0% | |
| GTGGGAATGTGGCTAATAAT+GGG | - | chr7.3:71831995-71832014 | MS.gene040490:intron | 40.0% | |
| TAAGACACACTTACCTTGTC+TGG | + | chr7.3:71830582-71830601 | None:intergenic | 40.0% | |
| TCATCATCCAACCAACAAGA+AGG | + | chr7.3:71830761-71830780 | None:intergenic | 40.0% | |
| TGAAGCCATGCAAAATCTAC+CGG | + | chr7.3:71830701-71830720 | None:intergenic | 40.0% | |
| TGATTGGCATCATGAACTTC+GGG | + | chr7.3:71831766-71831785 | None:intergenic | 40.0% | |
| TGTCAGACTTGCAGAATACA+TGG | - | chr7.3:71832035-71832054 | MS.gene040490:intron | 40.0% | |
| TTATAGGCTAAGGAGTTTGC+TGG | - | chr7.3:71831405-71831424 | MS.gene040490:CDS | 40.0% | |
| TTATGTATGCTAGGGAAGCT+CGG | - | chr7.3:71832407-71832426 | MS.gene040490:CDS | 40.0% | |
| ! | GGTGTTTTCATAGGAAGTGA+TGG | - | chr7.3:71831367-71831386 | MS.gene040490:CDS | 40.0% |
| ! | GTTTTCACCATTGTTACCCA+TGG | + | chr7.3:71831965-71831984 | None:intergenic | 40.0% |
| !! | AGATTTGTTGCACGAGTGTT+TGG | - | chr7.3:71832190-71832209 | MS.gene040490:intron | 40.0% |
| !! | CTTTGATTTTGCTACTGCCA+TGG | - | chr7.3:71831834-71831853 | MS.gene040490:intron | 40.0% |
| !! | GATTTGTTGCACGAGTGTTT+GGG | - | chr7.3:71832191-71832210 | MS.gene040490:intron | 40.0% |
| !!! | TCGAGGTTTGGTGTTTTCAT+AGG | - | chr7.3:71831358-71831377 | MS.gene040490:CDS | 40.0% |
| AATGGTGAAAACATGGGTGC+AGG | - | chr7.3:71831973-71831992 | MS.gene040490:intron | 45.0% | |
| AGACGCAGTATGAGACCTAA+CGG | + | chr7.3:71831445-71831464 | None:intergenic | 45.0% | |
| ATGAACTACGACACAGAGTC+TGG | - | chr7.3:71831317-71831336 | MS.gene040490:CDS | 45.0% | |
| ATGCTTGCCTTCTTGTTGGT+TGG | - | chr7.3:71830751-71830770 | MS.gene040490:CDS | 45.0% | |
| CACAACAATCGATCCAGACA+AGG | - | chr7.3:71830566-71830585 | MS.gene040490:CDS | 45.0% | |
| CATCCTACTTACAGATGCCA+TGG | - | chr7.3:71832231-71832250 | MS.gene040490:intron | 45.0% | |
| CATGGCATCTGTAAGTAGGA+TGG | + | chr7.3:71832233-71832252 | None:intergenic | 45.0% | |
| CATGGTGAAGACTAGCAATC+TGG | - | chr7.3:71832053-71832072 | MS.gene040490:intron | 45.0% | |
| CGTCTAAGTTACAACGGACA+GGG | - | chr7.3:71831460-71831479 | MS.gene040490:CDS | 45.0% | |
| GAACTTCCTGAATGTAAGCG+CGG | + | chr7.3:71830544-71830563 | None:intergenic | 45.0% | |
| GACCATGTTTGCCTTCTTGT+TGG | - | chr7.3:71830936-71830955 | MS.gene040490:CDS | 45.0% | |
| GACTATGCTTGCCTTCTTGT+TGG | - | chr7.3:71830747-71830766 | MS.gene040490:CDS | 45.0% | |
| GCATCAAAGAAGTTATGCGG+AGG | + | chr7.3:71831931-71831950 | None:intergenic | 45.0% | |
| GCATCTGTAAGTAGGATGGT+GGG | + | chr7.3:71832229-71832248 | None:intergenic | 45.0% | |
| GCTGGTAACAACAATGGTGA+TGG | - | chr7.3:71831895-71831914 | MS.gene040490:intron | 45.0% | |
| GGCATTGTGTGGTTGTTGAT+TGG | + | chr7.3:71831782-71831801 | None:intergenic | 45.0% | |
| GGTGGGAATGTGGCTAATAA+TGG | - | chr7.3:71831994-71832013 | MS.gene040490:intron | 45.0% | |
| GTCGTAGTTCATCACCAAAG+TGG | + | chr7.3:71831309-71831328 | None:intergenic | 45.0% | |
| GTCTAAGTTACAACGGACAG+GGG | - | chr7.3:71831461-71831480 | MS.gene040490:CDS | 45.0% | |
| GTCTGGTTAGAAGACACAAG+AGG | - | chr7.3:71831334-71831353 | MS.gene040490:CDS | 45.0% | |
| GTGAAGACTAGCAATCTGGT+AGG | - | chr7.3:71832057-71832076 | MS.gene040490:intron | 45.0% | |
| TAGAAGACACAAGAGGTTCG+AGG | - | chr7.3:71831341-71831360 | MS.gene040490:CDS | 45.0% | |
| ! | AGGCAGATTTTGGGCATCAT+CGG | + | chr7.3:71831803-71831822 | None:intergenic | 45.0% |
| ! | CGTATCCGGTAGATTTTGCA+TGG | - | chr7.3:71830693-71830712 | MS.gene040490:CDS | 45.0% |
| ! | GAAGGTATAGACAATGCTGC+TGG | - | chr7.3:71831877-71831896 | MS.gene040490:intron | 45.0% |
| ! | TGTGGCTAATAATGGGAGAG+TGG | - | chr7.3:71832002-71832021 | MS.gene040490:intron | 45.0% |
| ! | TTTTGTTACGGAGAACCAGC+TGG | - | chr7.3:71832336-71832355 | MS.gene040490:intron | 45.0% |
| !! | TGGCAGTTGGGAAAAGTGTT+AGG | - | chr7.3:71832356-71832375 | MS.gene040490:intron | 45.0% |
| !!! | CGGGTGGAAGAGTTTTGTTA+CGG | - | chr7.3:71832324-71832343 | MS.gene040490:intron | 45.0% |
| !!! | GGACGCGGACCTTTTTTTAT+AGG | - | chr7.3:71831389-71831408 | MS.gene040490:CDS | 45.0% |
| ACATCAACATCCGCTGGATC+CGG | + | chr7.3:71831721-71831740 | None:intergenic | 50.0% | |
| ACTCGACATGACCGAGCTAA+CGG | - | chr7.3:71831507-71831526 | MS.gene040490:CDS | 50.0% | |
| ACTTTCCGTGCAGGATCAAG+TGG | - | chr7.3:71832260-71832279 | MS.gene040490:intron | 50.0% | |
| AGCCCATGGCATCTGTAAGT+AGG | + | chr7.3:71832237-71832256 | None:intergenic | 50.0% | |
| AGGATCAAGTGGAAGGACAG+AGG | - | chr7.3:71832271-71832290 | MS.gene040490:intron | 50.0% | |
| ATCGTCGTCGCTGTCTTCAT+CGG | + | chr7.3:71831629-71831648 | None:intergenic | 50.0% | |
| ATCTCGGCAGCAATCAGGAA+AGG | + | chr7.3:71831562-71831581 | None:intergenic | 50.0% | |
| CTCCAAGGGATCCAGTATCT+CGG | + | chr7.3:71831578-71831597 | None:intergenic | 50.0% | |
| GACACAAGAGGTTCGAGGTT+TGG | - | chr7.3:71831346-71831365 | MS.gene040490:CDS | 50.0% | |
| GCATCATGAACTTCGGGATG+AGG | + | chr7.3:71831760-71831779 | None:intergenic | 50.0% | |
| GCGTCTAAGTTACAACGGAC+AGG | - | chr7.3:71831459-71831478 | MS.gene040490:CDS | 50.0% | |
| GGCATCTGTAAGTAGGATGG+TGG | + | chr7.3:71832230-71832249 | None:intergenic | 50.0% | |
| GTGAAAACATGGGTGCAGGT+GGG | - | chr7.3:71831977-71831996 | MS.gene040490:intron | 50.0% | |
| TCATGAACTTCGGGATGAGG+AGG | + | chr7.3:71831757-71831776 | None:intergenic | 50.0% | |
| TCCTTCCACTTGATCCTGCA+CGG | + | chr7.3:71832268-71832287 | None:intergenic | 50.0% | |
| TCGGGATGAGGAGGAGAATT+GGG | + | chr7.3:71831748-71831767 | None:intergenic | 50.0% | |
| TTCAACTCCTGTGGCAGAAC+CGG | - | chr7.3:71831699-71831718 | MS.gene040490:intron | 50.0% | |
| TTCGGGATGAGGAGGAGAAT+TGG | + | chr7.3:71831749-71831768 | None:intergenic | 50.0% | |
| ! | CCTGTCTCCCTTTTCGTATC+CGG | - | chr7.3:71830679-71830698 | MS.gene040490:CDS | 50.0% |
| ! | TCATAGGAAGTGATGGGACG+CGG | - | chr7.3:71831374-71831393 | MS.gene040490:CDS | 50.0% |
| !! | TCTGTAAGTAGGATGGTGGG+CGG | + | chr7.3:71832226-71832245 | None:intergenic | 50.0% |
| CCAGTATCTCGGCAGCAATC+AGG | + | chr7.3:71831567-71831586 | None:intergenic | 55.0% | |
| CCGGATACGAAAAGGGAGAC+AGG | + | chr7.3:71830682-71830701 | None:intergenic | 55.0% | |
| CCTCTCACGAACCGTTAGCT+CGG | + | chr7.3:71831521-71831540 | None:intergenic | 55.0% | |
| CCTGATTGCTGCCGAGATAC+TGG | - | chr7.3:71831564-71831583 | MS.gene040490:CDS | 55.0% | |
| CGAGATACTGGATCCCTTGG+AGG | - | chr7.3:71831576-71831595 | MS.gene040490:CDS | 55.0% | |
| GCACGGAAAGTCAAAGCCCA+TGG | + | chr7.3:71832251-71832270 | None:intergenic | 55.0% | |
| GCAGTATGAGACCTAACGGC+TGG | + | chr7.3:71831441-71831460 | None:intergenic | 55.0% | |
| GCTGCTGCCATGGGTAACAA+TGG | - | chr7.3:71831955-71831974 | MS.gene040490:intron | 55.0% | |
| GCTGTCTTCATCGGATGACG+AGG | + | chr7.3:71831620-71831639 | None:intergenic | 55.0% | |
| GGACAGGGGCTGTTCTACAT+GGG | - | chr7.3:71831475-71831494 | MS.gene040490:CDS | 55.0% | |
| GGTGAAAACATGGGTGCAGG+TGG | - | chr7.3:71831976-71831995 | MS.gene040490:intron | 55.0% | |
| GGTGCAACATCAACATCCGC+TGG | + | chr7.3:71831727-71831746 | None:intergenic | 55.0% | |
| GGTTCTGCCACAGGAGTTGA+AGG | + | chr7.3:71831700-71831719 | None:intergenic | 55.0% | |
| GTATGAGACCTAACGGCTGG+TGG | + | chr7.3:71831438-71831457 | None:intergenic | 55.0% | |
| GTATGCTAGGGAAGCTCGGA+TGG | - | chr7.3:71832411-71832430 | MS.gene040490:CDS | 55.0% | |
| TCCGTGCAGGATCAAGTGGA+AGG | - | chr7.3:71832264-71832283 | MS.gene040490:intron | 55.0% | |
| TCGGCAGCAATCAGGAAAGG+AGG | + | chr7.3:71831559-71831578 | None:intergenic | 55.0% | |
| TCTGCCACAGGAGTTGAAGG+AGG | + | chr7.3:71831697-71831716 | None:intergenic | 55.0% | |
| TGCACCTCCTTCAACTCCTG+TGG | - | chr7.3:71831690-71831709 | MS.gene040490:intron | 55.0% | |
| TGCCGAGATACTGGATCCCT+TGG | - | chr7.3:71831573-71831592 | MS.gene040490:CDS | 55.0% | |
| TGGGCATCATCGGCATTGTG+TGG | + | chr7.3:71831793-71831812 | None:intergenic | 55.0% | |
| ! | ACAGGAGTTGAAGGAGGTGC+AGG | + | chr7.3:71831691-71831710 | None:intergenic | 55.0% |
| ! | CACTTTTCCCAACTGCCAGC+TGG | + | chr7.3:71832354-71832373 | None:intergenic | 55.0% |
| ! | TGGGCTTTGACTTTCCGTGC+AGG | - | chr7.3:71832251-71832270 | MS.gene040490:intron | 55.0% |
| ACGGAGAACCAGCTGGCAGT+TGG | - | chr7.3:71832343-71832362 | MS.gene040490:intron | 60.0% | |
| CATGGGTGCAGGTGGGAATG+TGG | - | chr7.3:71831984-71832003 | MS.gene040490:intron | 60.0% | |
| CCGAGCTAACGGTTCGTGAG+AGG | - | chr7.3:71831518-71831537 | MS.gene040490:CDS | 60.0% | |
| CGGACAGGGGCTGTTCTACA+TGG | - | chr7.3:71831474-71831493 | MS.gene040490:CDS | 60.0% | |
| CGGAGAACCAGCTGGCAGTT+GGG | - | chr7.3:71832344-71832363 | MS.gene040490:intron | 60.0% | |
| GAAATGCCGCCGGAGGAAGA+TGG | + | chr7.3:71832297-71832316 | None:intergenic | 60.0% | |
| GAGCACTTCCACCAGCCGTT+AGG | - | chr7.3:71831427-71831446 | MS.gene040490:CDS | 60.0% | |
| GATGCTGCTGCTGCTGCCAT+GGG | - | chr7.3:71831946-71831965 | MS.gene040490:intron | 60.0% | |
| GGACAGAGGCCATCTTCCTC+CGG | - | chr7.3:71832285-71832304 | MS.gene040490:intron | 60.0% | |
| TCCTCCGGCGGCATTTCTCA+GGG | - | chr7.3:71832300-71832319 | MS.gene040490:intron | 60.0% | |
| TGATGCTGCTGCTGCTGCCA+TGG | - | chr7.3:71831945-71831964 | MS.gene040490:intron | 60.0% | |
| TGTGGCAGAACCGGATCCAG+CGG | - | chr7.3:71831708-71831727 | MS.gene040490:intron | 60.0% | |
| TTCCTCCGGCGGCATTTCTC+AGG | - | chr7.3:71832299-71832318 | MS.gene040490:intron | 60.0% | |
| ! | GGAGTTGAAGGAGGTGCAGG+AGG | + | chr7.3:71831688-71831707 | None:intergenic | 60.0% |
| CAGAGGCCATCTTCCTCCGG+CGG | - | chr7.3:71832288-71832307 | MS.gene040490:intron | 65.0% | |
| CCTCCGGCGGCATTTCTCAG+GGG | - | chr7.3:71832301-71832320 | MS.gene040490:intron | 65.0% | |
| GCTGGATCCGGTTCTGCCAC+AGG | + | chr7.3:71831709-71831728 | None:intergenic | 65.0% | |
| CCCCTGAGAAATGCCGCCGG+AGG | + | chr7.3:71832304-71832323 | None:intergenic | 70.0% | |
| CCGCCCCTGAGAAATGCCGC+CGG | + | chr7.3:71832307-71832326 | None:intergenic | 70.0% | |
| CCGGCGGCATTTCTCAGGGG+CGG | - | chr7.3:71832304-71832323 | MS.gene040490:intron | 70.0% | |
| CGGCATTTCTCAGGGGCGGG+TGG | - | chr7.3:71832308-71832327 | MS.gene040490:intron | 70.0% | |
| CGGCGGCATTTCTCAGGGGC+GGG | - | chr7.3:71832305-71832324 | MS.gene040490:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.3 | gene | 71830537 | 71832441 | 71830537 | ID=MS.gene040490 |
| chr7.3 | mRNA | 71830537 | 71832441 | 71830537 | ID=MS.gene040490.t1;Parent=MS.gene040490 |
| chr7.3 | exon | 71832391 | 71832441 | 71832391 | ID=MS.gene040490.t1.exon1;Parent=MS.gene040490.t1 |
| chr7.3 | CDS | 71832391 | 71832441 | 71832391 | ID=cds.MS.gene040490.t1;Parent=MS.gene040490.t1 |
| chr7.3 | exon | 71830904 | 71831704 | 71830904 | ID=MS.gene040490.t1.exon2;Parent=MS.gene040490.t1 |
| chr7.3 | CDS | 71830904 | 71831704 | 71830904 | ID=cds.MS.gene040490.t1;Parent=MS.gene040490.t1 |
| chr7.3 | exon | 71830537 | 71830800 | 71830537 | ID=MS.gene040490.t1.exon3;Parent=MS.gene040490.t1 |
| chr7.3 | CDS | 71830537 | 71830800 | 71830537 | ID=cds.MS.gene040490.t1;Parent=MS.gene040490.t1 |
| Gene Sequence |
| Protein sequence |
