Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene040532.t1 | XP_003596140.2 | 97.7 | 266 | 6 | 0 | 1 | 266 | 8 | 273 | 4.90E-152 | 547 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene040532.t1 | Q940T9 | 30.6 | 170 | 103 | 7 | 47 | 212 | 186 | 344 | 5.8e-08 | 59.7 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene040532.t1 | G7ITD4 | 97.7 | 266 | 6 | 0 | 1 | 266 | 1 | 266 | 3.6e-152 | 547.0 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene040532.t1 | TR | Others |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene040532.t1 | MTR_2g068730 | 97.744 | 266 | 6 | 0 | 1 | 266 | 1 | 266 | 0.0 | 559 |
MS.gene040532.t1 | MTR_8g098725 | 77.419 | 62 | 14 | 0 | 149 | 210 | 211 | 272 | 2.05e-24 | 100 |
MS.gene040532.t1 | MTR_8g098725 | 77.419 | 62 | 14 | 0 | 149 | 210 | 215 | 276 | 2.06e-24 | 100 |
MS.gene040532.t1 | MTR_5g010120 | 53.846 | 91 | 39 | 1 | 136 | 226 | 149 | 236 | 1.49e-23 | 96.3 |
MS.gene040532.t1 | MTR_1g044785 | 45.192 | 104 | 47 | 1 | 117 | 210 | 78 | 181 | 1.77e-22 | 92.8 |
MS.gene040532.t1 | MTR_1g073350 | 56.164 | 73 | 32 | 0 | 144 | 216 | 297 | 369 | 2.45e-21 | 92.8 |
MS.gene040532.t1 | MTR_2g096080 | 74.074 | 54 | 14 | 0 | 154 | 207 | 146 | 199 | 4.04e-19 | 84.3 |
MS.gene040532.t1 | MTR_4g061823 | 61.667 | 60 | 23 | 0 | 148 | 207 | 130 | 189 | 1.52e-17 | 79.7 |
MS.gene040532.t1 | MTR_4g061910 | 61.667 | 60 | 23 | 0 | 148 | 207 | 130 | 189 | 1.52e-17 | 79.7 |
MS.gene040532.t1 | MTR_3g091340 | 60.000 | 50 | 20 | 0 | 159 | 208 | 190 | 239 | 3.68e-13 | 67.8 |
MS.gene040532.t1 | MTR_3g091340 | 60.000 | 50 | 20 | 0 | 159 | 208 | 197 | 246 | 3.81e-13 | 67.8 |
MS.gene040532.t1 | MTR_3g091340 | 60.000 | 50 | 20 | 0 | 159 | 208 | 226 | 275 | 7.29e-13 | 67.4 |
MS.gene040532.t1 | MTR_1g008220 | 53.061 | 49 | 23 | 0 | 159 | 207 | 228 | 276 | 1.20e-11 | 63.9 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene040532.t1 | AT3G12890 | 42.180 | 211 | 101 | 7 | 46 | 256 | 42 | 231 | 1.38e-43 | 148 |
MS.gene040532.t1 | AT5G41380 | 75.806 | 62 | 15 | 0 | 149 | 210 | 201 | 262 | 5.38e-25 | 101 |
MS.gene040532.t1 | AT1G63820 | 60.241 | 83 | 31 | 1 | 149 | 229 | 178 | 260 | 1.08e-23 | 97.4 |
MS.gene040532.t1 | AT1G04500 | 42.857 | 126 | 55 | 3 | 100 | 224 | 237 | 346 | 4.69e-23 | 97.4 |
MS.gene040532.t1 | AT1G04500 | 42.857 | 126 | 55 | 3 | 100 | 224 | 237 | 346 | 4.69e-23 | 97.4 |
MS.gene040532.t1 | AT1G04500 | 42.857 | 126 | 55 | 3 | 100 | 224 | 228 | 337 | 4.78e-23 | 97.1 |
MS.gene040532.t1 | AT2G33350 | 69.355 | 62 | 19 | 0 | 154 | 215 | 302 | 363 | 3.06e-22 | 95.1 |
MS.gene040532.t1 | AT2G33350 | 69.355 | 62 | 19 | 0 | 154 | 215 | 301 | 362 | 3.13e-22 | 95.1 |
MS.gene040532.t1 | AT2G33350 | 69.355 | 62 | 19 | 0 | 154 | 215 | 290 | 351 | 3.22e-22 | 95.1 |
MS.gene040532.t1 | AT2G33350 | 69.355 | 62 | 19 | 0 | 154 | 215 | 310 | 371 | 4.29e-22 | 95.1 |
MS.gene040532.t1 | AT5G59990 | 43.119 | 109 | 61 | 1 | 106 | 214 | 107 | 214 | 6.25e-15 | 72.8 |
MS.gene040532.t1 | AT4G27900 | 42.254 | 71 | 35 | 1 | 137 | 207 | 194 | 258 | 6.40e-12 | 64.3 |
MS.gene040532.t1 | AT4G27900 | 42.254 | 71 | 35 | 1 | 137 | 207 | 194 | 258 | 6.40e-12 | 64.3 |
MS.gene040532.t1 | AT5G53420 | 55.102 | 49 | 22 | 0 | 159 | 207 | 135 | 183 | 7.62e-12 | 63.2 |
MS.gene040532.t1 | AT5G53420 | 55.102 | 49 | 22 | 0 | 159 | 207 | 135 | 183 | 7.62e-12 | 63.2 |
MS.gene040532.t1 | AT5G53420 | 55.102 | 49 | 22 | 0 | 159 | 207 | 135 | 183 | 7.62e-12 | 63.2 |
MS.gene040532.t1 | AT5G53420 | 55.102 | 49 | 22 | 0 | 159 | 207 | 214 | 262 | 8.72e-12 | 64.3 |
MS.gene040532.t1 | AT5G24930 | 30.460 | 174 | 102 | 6 | 47 | 214 | 186 | 346 | 7.30e-11 | 62.0 |
Find 52 sgRNAs with CRISPR-Local
Find 101 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GGCTTCTTGGATTCCAAATT+TGG | 0.102128 | 2.3:-27297808 | MS.gene040532:CDS |
TCTTGTTGCTCAACCAAATT+TGG | 0.128585 | 2.3:+27297795 | None:intergenic |
ATTGTGATGCTTCGGCTTCT+TGG | 0.226368 | 2.3:-27297821 | MS.gene040532:CDS |
ATGCCTGTTTATGATAATTA+TGG | 0.229776 | 2.3:-27297870 | MS.gene040532:CDS |
TTTATTATCAGATTGTAAAA+TGG | 0.231726 | 2.3:-27297757 | MS.gene040532:CDS |
CTAATGTTGCAAGAGAAAAT+TGG | 0.300530 | 2.3:-27297602 | MS.gene040532:CDS |
AATAATCAGCCACATATTAT+TGG | 0.303040 | 2.3:-27297690 | MS.gene040532:CDS |
TGCTGATTCATTTCAGTTCC+AGG | 0.315116 | 2.3:-27296692 | MS.gene040532:intron |
CACATTAATGAAGATTTCTA+TGG | 0.323076 | 2.3:-27296715 | MS.gene040532:CDS |
TCAAGAGGCCATGGCAAGTT+TGG | 0.324460 | 2.3:-27296078 | MS.gene040532:CDS |
TACCTTCCTACCTTTATGTT+TGG | 0.326979 | 2.3:+27297039 | None:intergenic |
GCAACAAGATTTCGCTGTTC+CGG | 0.338361 | 2.3:-27297781 | MS.gene040532:CDS |
TTATTATCAGATTGTAAAAT+GGG | 0.383948 | 2.3:-27297756 | MS.gene040532:CDS |
GCTCCATAATTATCATAAAC+AGG | 0.394748 | 2.3:+27297867 | None:intergenic |
GTCACTTGATTGTGATGCTT+CGG | 0.400739 | 2.3:-27297829 | MS.gene040532:CDS |
GAAAATATATAAGACCTTGA+TGG | 0.404923 | 2.3:+27296945 | None:intergenic |
AATTAATTGCAGGGGATTCA+AGG | 0.434763 | 2.3:-27297087 | MS.gene040532:intron |
TAATGTTGCAAGAGAAAATT+GGG | 0.435066 | 2.3:-27297601 | MS.gene040532:intron |
CAAATCATCTGGTGATGAAT+GGG | 0.437073 | 2.3:+27296046 | None:intergenic |
TGATAGAAGAGTAAGAGTGA+GGG | 0.443578 | 2.3:-27296812 | MS.gene040532:CDS |
ACAAATCATCTGGTGATGAA+TGG | 0.443657 | 2.3:+27296045 | None:intergenic |
GAAGAGTAAGAGTGAGGGGA+AGG | 0.444124 | 2.3:-27296807 | MS.gene040532:CDS |
AGTTGAAGAGCCAAACATAA+AGG | 0.450736 | 2.3:-27297049 | MS.gene040532:CDS |
GGAGGGTTTCAGAATTTCAA+TGG | 0.461142 | 2.3:-27297723 | MS.gene040532:CDS |
TAATTAATTCACAAATCATC+TGG | 0.462015 | 2.3:+27296035 | None:intergenic |
GCAACATTAGGATAAGTTGT+AGG | 0.468600 | 2.3:+27297615 | None:intergenic |
CTGATAGAAGAGTAAGAGTG+AGG | 0.485744 | 2.3:-27296813 | MS.gene040532:CDS |
AGAAGATCAATGTTGTGGTT+TGG | 0.497235 | 2.3:-27297655 | MS.gene040532:CDS |
TTACAATCTGATAATAAAGC+CGG | 0.515082 | 2.3:+27297762 | None:intergenic |
GAAGGTACTCAGAAGAAGAA+AGG | 0.519719 | 2.3:-27297023 | MS.gene040532:CDS |
GATAGAAGAGTAAGAGTGAG+GGG | 0.529042 | 2.3:-27296811 | MS.gene040532:CDS |
ATAGAAGTGATGAGGGATTG+TGG | 0.543919 | 2.3:+27297983 | None:intergenic |
GCAGTTAAAGAATGAAGAAG+AGG | 0.550467 | 2.3:-27296108 | MS.gene040532:intron |
AACTCATGACCAATAATATG+TGG | 0.550988 | 2.3:+27297681 | None:intergenic |
TAGTTTGTATAGAAGTGATG+AGG | 0.558490 | 2.3:+27297975 | None:intergenic |
TATGGACAATACTATGATGT+GGG | 0.559347 | 2.3:-27297910 | MS.gene040532:CDS |
AGTTTGTATAGAAGTGATGA+GGG | 0.571794 | 2.3:+27297976 | None:intergenic |
TCTGATTTCACCACACAACA+AGG | 0.572962 | 2.3:-27297948 | MS.gene040532:CDS |
GAAGAGCCAAACATAAAGGT+AGG | 0.576416 | 2.3:-27297045 | MS.gene040532:CDS |
AGCCAAACATAAAGGTAGGA+AGG | 0.578415 | 2.3:-27297041 | MS.gene040532:CDS |
TAAAGAATGAAGAAGAGGAC+TGG | 0.579395 | 2.3:-27296103 | MS.gene040532:CDS |
GGACTGGCTTCAAGAGGCCA+TGG | 0.582269 | 2.3:-27296087 | MS.gene040532:CDS |
AAACTTCAACAAAACCATCA+AGG | 0.586667 | 2.3:-27296959 | MS.gene040532:intron |
TTATGGACAATACTATGATG+TGG | 0.594335 | 2.3:-27297911 | MS.gene040532:CDS |
TAAATAGACCAAACTTGCCA+TGG | 0.601398 | 2.3:+27296070 | None:intergenic |
ACATTAGGATAAGTTGTAGG+TGG | 0.601914 | 2.3:+27297618 | None:intergenic |
CTGATTTCACCACACAACAA+GGG | 0.621194 | 2.3:-27297947 | MS.gene040532:CDS |
AGAAGAGGACTGGCTTCAAG+AGG | 0.645775 | 2.3:-27296093 | MS.gene040532:CDS |
GACATGTGAAGAAGATCACA+TGG | 0.652465 | 2.3:-27296767 | MS.gene040532:CDS |
TTTGTAGAAGATCAATGTTG+TGG | 0.662640 | 2.3:-27297660 | MS.gene040532:CDS |
TGAAGAAAACCCTTGTTGTG+TGG | 0.693927 | 2.3:+27297938 | None:intergenic |
ATGGACAATACTATGATGTG+GGG | 0.739532 | 2.3:-27297909 | MS.gene040532:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AAAACTTAAAAATTAACTAA+AGG | + | chr2.3:27296656-27296675 | None:intergenic | 10.0% |
!!! | AAGTATATAACTTTTTTTTA+AGG | - | chr2.3:27297761-27297780 | MS.gene040532:CDS | 10.0% |
!!! | CATTTTTATTAGATTTTTTT+TGG | - | chr2.3:27297455-27297474 | MS.gene040532:intron | 10.0% |
!!! | TTATATACTTTTTTTTTGTA+GGG | + | chr2.3:27297751-27297770 | None:intergenic | 10.0% |
!! | ATCAATTTAAGAACATAATT+AGG | + | chr2.3:27297898-27297917 | None:intergenic | 15.0% |
!! | TATACATGTCTATTTATATT+TGG | + | chr2.3:27296894-27296913 | None:intergenic | 15.0% |
!! | TTATTATCAGATTGTAAAAT+GGG | - | chr2.3:27296280-27296299 | MS.gene040532:intron | 15.0% |
!! | TTTATTATCAGATTGTAAAA+TGG | - | chr2.3:27296279-27296298 | MS.gene040532:intron | 15.0% |
!!! | AAAATTCATCTCTAATTTTA+TGG | + | chr2.3:27297808-27297827 | None:intergenic | 15.0% |
!!! | ATAGTTTAGTACTTTTTTTA+GGG | + | chr2.3:27297503-27297522 | None:intergenic | 15.0% |
!!! | GTTATATACTTTTTTTTTGT+AGG | + | chr2.3:27297752-27297771 | None:intergenic | 15.0% |
!!! | TATAGTTTAGTACTTTTTTT+AGG | + | chr2.3:27297504-27297523 | None:intergenic | 15.0% |
!!! | TATATACTTTTTTTTTGTAG+GGG | + | chr2.3:27297750-27297769 | None:intergenic | 15.0% |
!! | TTTAATTCATATACACTAAG+TGG | - | chr2.3:27297592-27297611 | MS.gene040532:intron | 20.0% |
!!! | AACTAAACAGTTTTTATAGT+CGG | + | chr2.3:27297626-27297645 | None:intergenic | 20.0% |
!!! | GAATTTTATTTCAAAGCTAT+GGG | + | chr2.3:27296793-27296812 | None:intergenic | 20.0% |
!!! | TCAAAGTGTTATTTATATCA+TGG | - | chr2.3:27296502-27296521 | MS.gene040532:intron | 20.0% |
!!! | TGAATTTTATTTCAAAGCTA+TGG | + | chr2.3:27296794-27296813 | None:intergenic | 20.0% |
!!! | TTAACTTGAAATTAATTGCA+GGG | - | chr2.3:27296940-27296959 | MS.gene040532:intron | 20.0% |
!!! | TTTTTGGTGAAAATGTTTAA+CGG | + | chr2.3:27297547-27297566 | None:intergenic | 20.0% |
! | AATAATCAGCCACATATTAT+TGG | - | chr2.3:27296346-27296365 | MS.gene040532:intron | 25.0% |
! | ATGCCTGTTTATGATAATTA+TGG | - | chr2.3:27296166-27296185 | MS.gene040532:intron | 25.0% |
! | CACATTAATGAAGATTTCTA+TGG | - | chr2.3:27297321-27297340 | MS.gene040532:intron | 25.0% |
! | CATACTGTAAAATTATGTGA+AGG | + | chr2.3:27297185-27297204 | None:intergenic | 25.0% |
! | CTATACAAGAATGAAACATT+AGG | + | chr2.3:27296476-27296495 | None:intergenic | 25.0% |
! | GAAAATATATAAGACCTTGA+TGG | + | chr2.3:27297094-27297113 | None:intergenic | 25.0% |
! | TAACTTGAAATTAATTGCAG+GGG | - | chr2.3:27296941-27296960 | MS.gene040532:intron | 25.0% |
! | TAATGTTGCAAGAGAAAATT+GGG | - | chr2.3:27296435-27296454 | MS.gene040532:intron | 25.0% |
! | TTACAATCTGATAATAAAGC+CGG | + | chr2.3:27296277-27296296 | None:intergenic | 25.0% |
!! | GATTGTAAAATGGGATTTTA+TGG | - | chr2.3:27296289-27296308 | MS.gene040532:intron | 25.0% |
!! | GTCTACATTTTGTGTTTAAT+TGG | - | chr2.3:27297853-27297872 | MS.gene040532:CDS | 25.0% |
!! | GTCTTATATATTTTCTCACA+TGG | - | chr2.3:27297099-27297118 | MS.gene040532:intron | 25.0% |
!! | GTTAACTTGAAATTAATTGC+AGG | - | chr2.3:27296939-27296958 | MS.gene040532:intron | 25.0% |
!! | TTATATATTTTCTCACATGG+TGG | - | chr2.3:27297102-27297121 | MS.gene040532:intron | 25.0% |
!! | TTTTGGTGAAAATGTTTAAC+GGG | + | chr2.3:27297546-27297565 | None:intergenic | 25.0% |
AAACTTCAACAAAACCATCA+AGG | - | chr2.3:27297077-27297096 | MS.gene040532:CDS | 30.0% | |
AACTCATGACCAATAATATG+TGG | + | chr2.3:27296358-27296377 | None:intergenic | 30.0% | |
AGTTTGTATAGAAGTGATGA+GGG | + | chr2.3:27296063-27296082 | None:intergenic | 30.0% | |
CAGGTAACTTTCATGATTTA+AGG | - | chr2.3:27297363-27297382 | MS.gene040532:intron | 30.0% | |
CTAATGTTGCAAGAGAAAAT+TGG | - | chr2.3:27296434-27296453 | MS.gene040532:intron | 30.0% | |
CTTAAATCATGAAAGTTACC+TGG | + | chr2.3:27297365-27297384 | None:intergenic | 30.0% | |
GCTCCATAATTATCATAAAC+AGG | + | chr2.3:27296172-27296191 | None:intergenic | 30.0% | |
GGGAATTATAGTTAAGTACT+TGG | + | chr2.3:27297483-27297502 | None:intergenic | 30.0% | |
GTGTTGCGACAATAATATAA+AGG | + | chr2.3:27296593-27296612 | None:intergenic | 30.0% | |
TATGGACAATACTATGATGT+GGG | - | chr2.3:27296126-27296145 | MS.gene040532:intron | 30.0% | |
TTATGGACAATACTATGATG+TGG | - | chr2.3:27296125-27296144 | MS.gene040532:intron | 30.0% | |
TTTGTAGAAGATCAATGTTG+TGG | - | chr2.3:27296376-27296395 | MS.gene040532:intron | 30.0% | |
! | AAAAGTGCACATATGAATGA+TGG | - | chr2.3:27297693-27297712 | MS.gene040532:CDS | 30.0% |
! | AGGGTTTTCTTCAACAATTA+TGG | - | chr2.3:27296108-27296127 | MS.gene040532:intron | 30.0% |
! | CAATTTTCTCTTGCAACATT+AGG | + | chr2.3:27296436-27296455 | None:intergenic | 30.0% |
! | GTTTTTCTTGATCAAGTACA+TGG | - | chr2.3:27296524-27296543 | MS.gene040532:intron | 30.0% |
! | TAAACAGTTTTTATAGTCGG+AGG | + | chr2.3:27297623-27297642 | None:intergenic | 30.0% |
! | TAGTTTGTATAGAAGTGATG+AGG | + | chr2.3:27296064-27296083 | None:intergenic | 30.0% |
! | TCATCTCTAATTTTATGGAG+TGG | + | chr2.3:27297803-27297822 | None:intergenic | 30.0% |
! | TGCTTTTCTTAAGATGTCAA+GGG | + | chr2.3:27296730-27296749 | None:intergenic | 30.0% |
! | TGTAAAATGGGATTTTATGG+TGG | - | chr2.3:27296292-27296311 | MS.gene040532:intron | 30.0% |
! | TTATTGTCGCAACACAATTT+TGG | - | chr2.3:27296598-27296617 | MS.gene040532:intron | 30.0% |
!! | TTGCTTTTCTTAAGATGTCA+AGG | + | chr2.3:27296731-27296750 | None:intergenic | 30.0% |
!!! | ATGATTCTCAAGCTTTTTTG+TGG | + | chr2.3:27297295-27297314 | None:intergenic | 30.0% |
AATTAATTGCAGGGGATTCA+AGG | - | chr2.3:27296949-27296968 | MS.gene040532:intron | 35.0% | |
ACATTAGGATAAGTTGTAGG+TGG | + | chr2.3:27296421-27296440 | None:intergenic | 35.0% | |
AGAAGATCAATGTTGTGGTT+TGG | - | chr2.3:27296381-27296400 | MS.gene040532:intron | 35.0% | |
AGTTGAAGAGCCAAACATAA+AGG | - | chr2.3:27296987-27297006 | MS.gene040532:CDS | 35.0% | |
ATGGACAATACTATGATGTG+GGG | - | chr2.3:27296127-27296146 | MS.gene040532:intron | 35.0% | |
GCAACATTAGGATAAGTTGT+AGG | + | chr2.3:27296424-27296443 | None:intergenic | 35.0% | |
GCAGTTAAAGAATGAAGAAG+AGG | - | chr2.3:27297928-27297947 | MS.gene040532:CDS | 35.0% | |
TAAAGAATGAAGAAGAGGAC+TGG | - | chr2.3:27297933-27297952 | MS.gene040532:CDS | 35.0% | |
TAAATAGACCAAACTTGCCA+TGG | + | chr2.3:27297969-27297988 | None:intergenic | 35.0% | |
TACCTTCCTACCTTTATGTT+TGG | + | chr2.3:27297000-27297019 | None:intergenic | 35.0% | |
TCTTGTTGCTCAACCAAATT+TGG | + | chr2.3:27296244-27296263 | None:intergenic | 35.0% | |
TGATAGAAGAGTAAGAGTGA+GGG | - | chr2.3:27297224-27297243 | MS.gene040532:intron | 35.0% | |
! | AAAATGGGATTTTATGGTGG+AGG | - | chr2.3:27296295-27296314 | MS.gene040532:intron | 35.0% |
! | ACAAATCATCTGGTGATGAA+TGG | + | chr2.3:27297994-27298013 | None:intergenic | 35.0% |
! | CAAATCATCTGGTGATGAAT+GGG | + | chr2.3:27297993-27298012 | None:intergenic | 35.0% |
!! | AAATGGGATTTTATGGTGGA+GGG | - | chr2.3:27296296-27296315 | MS.gene040532:intron | 35.0% |
!!! | ACATGGTTTTGAATTGCCAT+TGG | - | chr2.3:27296541-27296560 | MS.gene040532:intron | 35.0% |
AATTGCAAAAGCGACTCCAA+TGG | + | chr2.3:27296560-27296579 | None:intergenic | 40.0% | |
AGCCAAACATAAAGGTAGGA+AGG | - | chr2.3:27296995-27297014 | MS.gene040532:CDS | 40.0% | |
ATAGAAGTGATGAGGGATTG+TGG | + | chr2.3:27296056-27296075 | None:intergenic | 40.0% | |
CTGATAGAAGAGTAAGAGTG+AGG | - | chr2.3:27297223-27297242 | MS.gene040532:intron | 40.0% | |
CTGATTTCACCACACAACAA+GGG | - | chr2.3:27296089-27296108 | MS.gene040532:CDS | 40.0% | |
GAAGAGCCAAACATAAAGGT+AGG | - | chr2.3:27296991-27297010 | MS.gene040532:CDS | 40.0% | |
GACATGTGAAGAAGATCACA+TGG | - | chr2.3:27297269-27297288 | MS.gene040532:intron | 40.0% | |
GATAGAAGAGTAAGAGTGAG+GGG | - | chr2.3:27297225-27297244 | MS.gene040532:intron | 40.0% | |
GGAGGGTTTCAGAATTTCAA+TGG | - | chr2.3:27296313-27296332 | MS.gene040532:intron | 40.0% | |
GGCTTCTTGGATTCCAAATT+TGG | - | chr2.3:27296228-27296247 | MS.gene040532:intron | 40.0% | |
GTCACTTGATTGTGATGCTT+CGG | - | chr2.3:27296207-27296226 | MS.gene040532:intron | 40.0% | |
TCTGATTTCACCACACAACA+AGG | - | chr2.3:27296088-27296107 | MS.gene040532:CDS | 40.0% | |
! | TGAAGAAAACCCTTGTTGTG+TGG | + | chr2.3:27296101-27296120 | None:intergenic | 40.0% |
!! | GAAGGTACTCAGAAGAAGAA+AGG | - | chr2.3:27297013-27297032 | MS.gene040532:CDS | 40.0% |
!! | TGCTGATTCATTTCAGTTCC+AGG | - | chr2.3:27297344-27297363 | MS.gene040532:intron | 40.0% |
ATTGTGATGCTTCGGCTTCT+TGG | - | chr2.3:27296215-27296234 | MS.gene040532:intron | 45.0% | |
GCAACAAGATTTCGCTGTTC+CGG | - | chr2.3:27296255-27296274 | MS.gene040532:intron | 45.0% | |
!!! | CAAATTAATATTAAATTTTA+AGG | - | chr2.3:27297568-27297587 | MS.gene040532:intron | 5.0% |
!!! | TTTAATATTAATTTGATTTT+TGG | + | chr2.3:27297563-27297582 | None:intergenic | 5.0% |
!!! | TTTTATTTTTAAAAATTCAT+AGG | - | chr2.3:27296703-27296722 | MS.gene040532:CDS | 5.0% |
!!! | TTTTTTTTTTTTTTTTTGAA+AGG | - | chr2.3:27296822-27296841 | MS.gene040532:CDS | 5.0% |
GAAGAGTAAGAGTGAGGGGA+AGG | - | chr2.3:27297229-27297248 | MS.gene040532:intron | 50.0% | |
TCAAGAGGCCATGGCAAGTT+TGG | - | chr2.3:27297958-27297977 | MS.gene040532:CDS | 50.0% | |
!! | AGAAGAGGACTGGCTTCAAG+AGG | - | chr2.3:27297943-27297962 | MS.gene040532:CDS | 50.0% |
!! | GGACTGGCTTCAAGAGGCCA+TGG | - | chr2.3:27297949-27297968 | MS.gene040532:CDS | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2.3 | gene | 27296043 | 27298015 | 27296043 | ID=MS.gene040532 |
chr2.3 | mRNA | 27296043 | 27298015 | 27296043 | ID=MS.gene040532.t1;Parent=MS.gene040532 |
chr2.3 | exon | 27297602 | 27298015 | 27297602 | ID=MS.gene040532.t1.exon1;Parent=MS.gene040532.t1 |
chr2.3 | CDS | 27297602 | 27298015 | 27297602 | ID=cds.MS.gene040532.t1;Parent=MS.gene040532.t1 |
chr2.3 | exon | 27296960 | 27297097 | 27296960 | ID=MS.gene040532.t1.exon2;Parent=MS.gene040532.t1 |
chr2.3 | CDS | 27296960 | 27297097 | 27296960 | ID=cds.MS.gene040532.t1;Parent=MS.gene040532.t1 |
chr2.3 | exon | 27296693 | 27296857 | 27296693 | ID=MS.gene040532.t1.exon3;Parent=MS.gene040532.t1 |
chr2.3 | CDS | 27296693 | 27296857 | 27296693 | ID=cds.MS.gene040532.t1;Parent=MS.gene040532.t1 |
chr2.3 | exon | 27296043 | 27296126 | 27296043 | ID=MS.gene040532.t1.exon4;Parent=MS.gene040532.t1 |
chr2.3 | CDS | 27296043 | 27296126 | 27296043 | ID=cds.MS.gene040532.t1;Parent=MS.gene040532.t1 |
Gene Sequence |
Protein sequence |