AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene040588

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene040588.t1 MTR_2g069560 94.869 916 47 0 1 916 104 1019 0.0 1761
MS.gene040588.t1 MTR_2g069560 94.869 916 47 0 1 916 112 1027 0.0 1761
MS.gene040588.t1 MTR_2g069560 94.708 718 38 0 199 916 1 718 0.0 1392
MS.gene040588.t1 MTR_2g069560 94.429 718 40 0 1 718 112 829 0.0 1367
MS.gene040588.t1 MTR_2g069560 93.141 554 38 0 1 554 104 657 0.0 1051
MS.gene040588.t1 MTR_2g069560 93.141 554 38 0 1 554 112 665 0.0 1051
MS.gene040588.t1 MTR_2g069560 94.960 377 19 0 1 377 112 488 0.0 728
MS.gene040588.t1 MTR_2g069560 94.960 377 19 0 1 377 112 488 0.0 728
MS.gene040588.t1 MTR_2g073720 62.162 74 19 1 37 110 37 101 3.34e-17 78.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene040588.t1 AT1G04390 43.373 913 509 5 1 911 95 1001 0.0 724

Find 169 sgRNAs with CRISPR-Local

Find 265 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAACTTGTTATTAACTTAAT+TGG 0.088135 2.1:+28979549 MS.gene040588:CDS
TCTTATATTCTAAGTTATTT+TGG 0.154673 2.1:+28979951 MS.gene040588:CDS
CTCCTTCATATAGGCAATTA+AGG 0.156017 2.1:+28981913 MS.gene040588:CDS
GCTTGGTGAGTTCTGGATTT+TGG 0.177722 2.1:+28981755 MS.gene040588:CDS
TGCAAACTGTATTCCATAAA+AGG 0.232443 2.1:+28979709 MS.gene040588:CDS
CTCTCTCATCCCACAAATTA+TGG 0.241887 2.1:-28978722 None:intergenic
CTAAAGCTGTACACATCTTT+AGG 0.249325 2.1:+28978327 MS.gene040588:CDS
ATTGTTGGAATATGTATATT+TGG 0.255950 2.1:+28980238 MS.gene040588:CDS
TTGTGCTACTGCTTTGAATT+TGG 0.257052 2.1:+28978044 MS.gene040588:CDS
TTTGTTGGCTTGGTGAGTTC+TGG 0.258921 2.1:+28981748 MS.gene040588:CDS
GCAAAGGAATGTCTAGTAAA+AGG 0.277394 2.1:-28979827 None:intergenic
AAGAGAGTTCCCAATCCTTT+TGG 0.277839 2.1:-28980000 None:intergenic
CTCCAATGGCAAAACAATTT+CGG 0.283584 2.1:-28978917 None:intergenic
GGCAATTAAAATAATCAAAA+TGG 0.286723 2.1:+28981839 MS.gene040588:CDS
GTCTGGATGTGATTATTTAC+AGG 0.297365 2.1:+28980948 MS.gene040588:CDS
ATAGTTGTTCTCAATCCTTT+TGG 0.298736 2.1:-28978758 None:intergenic
GCAATCATCATATCAGGTTT+TGG 0.308467 2.1:+28978833 MS.gene040588:CDS
TCAGGGATAATATATAATCT+AGG 0.310303 2.1:-28979500 None:intergenic
TCCATAAAAGGTCTTGTTGC+TGG 0.312735 2.1:+28979721 MS.gene040588:CDS
TTGTTGGAATATGTATATTT+GGG 0.319518 2.1:+28980239 MS.gene040588:CDS
CAGTCATTCACAAGTTATAA+AGG 0.319849 2.1:+28981587 MS.gene040588:intron
CTTCCACAAAGAGAGCTTAT+AGG 0.328839 2.1:-28981862 None:intergenic
TTTATGCAGCTTCACATTTG+TGG 0.350506 2.1:+28979287 MS.gene040588:intron
GATTGGGAACTCTCTTAATA+AGG 0.355453 2.1:+28980007 MS.gene040588:CDS
AAAAGGATTGAGAACAACTA+TGG 0.357983 2.1:+28978760 MS.gene040588:CDS
TGTTGAGGTGGCCTTCATCT+AGG 0.358318 2.1:+28978220 MS.gene040588:CDS
GCAAAACAATTTCGGAAGAT+TGG 0.358748 2.1:-28978909 None:intergenic
AACTTGTTATTAACTTAATT+GGG 0.359198 2.1:+28979550 MS.gene040588:CDS
GGGCTGGCAATCATCATATC+AGG 0.359641 2.1:+28978827 MS.gene040588:CDS
ATTAAAACAGCCCTTGATAC+TGG 0.361067 2.1:-28979372 None:intergenic
TGAAGCATTGATGTTATTGT+TGG 0.363458 2.1:+28980223 MS.gene040588:CDS
ATGTTCGGATAGAGGGGTTT+CGG 0.364447 2.1:+28978540 MS.gene040588:CDS
CAATAGAAGCGGAATAAATA+AGG 0.367946 2.1:-28981977 None:intergenic
TTGCGACTCATTGTAGCAAA+TGG 0.377835 2.1:+28980044 MS.gene040588:CDS
TCGGCTTGCTCAATGTCTAT+TGG 0.377904 2.1:+28978559 MS.gene040588:CDS
AAAGTATTCAGGAAGCTTGC+TGG 0.379435 2.1:+28981778 MS.gene040588:CDS
TCCTTCATATAGGCAATTAA+GGG 0.380231 2.1:+28981914 MS.gene040588:CDS
AGTTATGTGTGGGACGTTCT+TGG 0.385008 2.1:+28978997 MS.gene040588:CDS
AACAAACACGGTTGCAATAG+TGG 0.393093 2.1:-28977961 None:intergenic
AGTTGGCTCAAATTACTCAT+TGG 0.394381 2.1:+28978806 MS.gene040588:CDS
AGAAAATTGTTTAAAAGTGA+TGG 0.395093 2.1:+28978672 MS.gene040588:CDS
AAAAGGTCTTGTTGCTGGAT+TGG 0.407271 2.1:+28979726 MS.gene040588:CDS
TATGTGGAGCTTTGTTGGCT+TGG 0.408026 2.1:+28981738 MS.gene040588:CDS
GCTAAATTGAATGGGCTTGT+TGG 0.410643 2.1:+28980862 MS.gene040588:CDS
AGTTCAACATCATTACAAAC+AGG 0.413790 2.1:-28978246 None:intergenic
ACTATTGCAACCGTGTTTGT+TGG 0.414256 2.1:+28977963 MS.gene040588:CDS
TTATAAAGGTTGATATTAGC+TGG 0.423730 2.1:+28981601 MS.gene040588:CDS
CAACTATGGTTCTGTATTAG+TGG 0.423956 2.1:+28978774 MS.gene040588:CDS
TGCGACTCATTGTAGCAAAT+GGG 0.425092 2.1:+28980045 MS.gene040588:CDS
AGCCATATGTGGAGCTTTGT+TGG 0.425519 2.1:+28981733 MS.gene040588:CDS
CCCTCATGATGTTCGGATAG+AGG 0.430203 2.1:+28978532 MS.gene040588:CDS
TTACAGGGTTTGTTCAGATC+AGG 0.430822 2.1:+28980964 MS.gene040588:CDS
GGGGATTCCGTGAGTGTTCA+TGG 0.433973 2.1:+28980065 MS.gene040588:CDS
TGGAATACAGTTTGCAAATG+AGG 0.436839 2.1:-28979702 None:intergenic
GTTGGCTCAAATTACTCATT+GGG 0.440495 2.1:+28978807 MS.gene040588:CDS
TTGTTGATGCCATAATTTGT+GGG 0.444369 2.1:+28978713 MS.gene040588:CDS
GTTATGTGTGGGACGTTCTT+GGG 0.450565 2.1:+28978998 MS.gene040588:CDS
TATATTTCGAACAATGCAAA+TGG 0.452695 2.1:-28978133 None:intergenic
TAAGCTCTCTTTGTGGAAGT+TGG 0.457752 2.1:+28981866 MS.gene040588:CDS
TGCAAATGAGGAGCAACCTC+TGG 0.459121 2.1:-28979690 None:intergenic
TTCAAGGTGAACCAGTATCA+AGG 0.459159 2.1:+28979361 MS.gene040588:CDS
AGATGAAGTAAGATTAAAGC+TGG 0.462284 2.1:-28980384 None:intergenic
ACTTCATCTCTTGATTCAGC+TGG 0.463446 2.1:+28980398 MS.gene040588:CDS
CTTTCAGTCCTGGAGTGAAA+TGG 0.463586 2.1:+28979922 MS.gene040588:CDS
TCTGATATACTGAAGGTCAT+AGG 0.465492 2.1:+28979447 MS.gene040588:CDS
CCTCATGATGTTCGGATAGA+GGG 0.466662 2.1:+28978533 MS.gene040588:CDS
CACAAAGTTATATTGCAGTC+TGG 0.467245 2.1:+28980931 MS.gene040588:CDS
ATAATGGAAGCTAAATTGAA+TGG 0.468646 2.1:+28980853 MS.gene040588:CDS
ACTCTCATGGGTATAACTAC+AGG 0.470412 2.1:-28979055 None:intergenic
CTGCAAAGCATTTGCAAGAG+AGG 0.471231 2.1:-28980332 None:intergenic
TGATATGAAGTTCACTCTCA+TGG 0.474270 2.1:-28979068 None:intergenic
ATGGATATTTGTTTCTCCAA+TGG 0.474322 2.1:-28978931 None:intergenic
TCTTGATTCTTCTAAGCAGT+TGG 0.480319 2.1:+28981818 MS.gene040588:CDS
GTAAGATTAAAGCTGGGAAA+AGG 0.480512 2.1:-28980377 None:intergenic
AGCCAACAAAGCTCCACATA+TGG 0.482790 2.1:-28981735 None:intergenic
AATCTAACCCTCATGATGTT+CGG 0.483450 2.1:+28978525 MS.gene040588:CDS
GGAAAAGGTGTGCCCCACTT+TGG 0.488293 2.1:-28980362 None:intergenic
AGTAGCACCTCTTTCAGTCC+TGG 0.489560 2.1:+28979912 MS.gene040588:CDS
TAATGGAAGCTAAATTGAAT+GGG 0.489988 2.1:+28980854 MS.gene040588:CDS
ATTTGTGGGATGAGAGAGAC+AGG 0.492475 2.1:+28978727 MS.gene040588:CDS
TGGTTGTTTGTGGGTTAACA+TGG 0.493074 2.1:+28981683 MS.gene040588:CDS
AATTGAATGGGCTTGTTGGA+TGG 0.493303 2.1:+28980866 MS.gene040588:CDS
TGAACATGCATATGTGGTAC+TGG 0.495754 2.1:-28980910 None:intergenic
ATTCAATTTGCAGCCATATG+TGG 0.496585 2.1:+28981722 MS.gene040588:CDS
CAGGGATAATATATAATCTA+GGG 0.497938 2.1:-28979499 None:intergenic
TATAAAGGTTGATATTAGCT+GGG 0.501910 2.1:+28981602 MS.gene040588:CDS
GTCTCATAGCTCCTTCATAT+AGG 0.503354 2.1:+28981904 MS.gene040588:CDS
ACAAATGATTGTGCAGGCGA+TGG 0.504540 2.1:+28978499 MS.gene040588:CDS
CATTGATTAAACTAGTACAT+TGG 0.512817 2.1:+28981628 MS.gene040588:CDS
CTCTCATGGGTATAACTACA+GGG 0.512953 2.1:-28979054 None:intergenic
TGGCCTATAAGCTCTCTTTG+TGG 0.514178 2.1:+28981859 MS.gene040588:CDS
GAAACAAATATCCATGGTAA+AGG 0.514701 2.1:+28978939 MS.gene040588:CDS
GCTGGATTGGTAAAGGAGAC+TGG 0.514721 2.1:+28979739 MS.gene040588:CDS
CTTGTTGATGCCATAATTTG+TGG 0.517271 2.1:+28978712 MS.gene040588:CDS
ATTTCTACAAATGATTGTGC+AGG 0.517797 2.1:+28978493 MS.gene040588:CDS
TCTTGTTGCTGGATTGGTAA+AGG 0.518147 2.1:+28979732 MS.gene040588:CDS
TCTGAGTGCTACAAGTGAAA+AGG 0.520491 2.1:+28978077 MS.gene040588:CDS
CCCTCTATCCGAACATCATG+AGG 0.521428 2.1:-28978533 None:intergenic
TCCTTTGCAATTTAGTAGAG+AGG 0.521866 2.1:+28979842 MS.gene040588:CDS
TCTATTGAACTTAACCATGA+AGG 0.522377 2.1:+28981993 MS.gene040588:CDS
ATTGAATGGGCTTGTTGGAT+GGG 0.524976 2.1:+28980867 MS.gene040588:CDS
CAAATGATTGTGCAGGCGAT+GGG 0.525532 2.1:+28978500 MS.gene040588:CDS
GTAATGATATTCATGTAGAA+AGG 0.527922 2.1:+28979667 MS.gene040588:CDS
TGTAGCACAAAAGCTTATAG+AGG 0.528432 2.1:+28978460 MS.gene040588:CDS
TCCCTTAATTGCCTATATGA+AGG 0.529685 2.1:-28981915 None:intergenic
ACAAATATCCATGGTAAAGG+AGG 0.530448 2.1:+28978942 MS.gene040588:CDS
GCACAAAAGCTTATAGAGGA+TGG 0.531800 2.1:+28978464 MS.gene040588:CDS
CAATTAAGTTAATAACAAGT+TGG 0.532753 2.1:-28979548 None:intergenic
CACGGTTGCAATAGTGGACT+CGG 0.534163 2.1:-28977955 None:intergenic
AGACAGGGCCGTGTTCCAAA+AGG 0.534873 2.1:+28978743 MS.gene040588:CDS
TGAGCACAATTCTGTTGAGG+TGG 0.536544 2.1:+28978208 MS.gene040588:CDS
GCTCAAATTACTCATTGGGC+TGG 0.539746 2.1:+28978811 MS.gene040588:CDS
GATGAAGTAAGATTAAAGCT+GGG 0.545003 2.1:-28980383 None:intergenic
ACTTCTGAAGGTAGAAGTGC+TGG 0.546217 2.1:-28980110 None:intergenic
CTGGATTGGTAAAGGAGACT+GGG 0.546314 2.1:+28979740 MS.gene040588:CDS
TTGGAATATGTATATTTGGG+AGG 0.551105 2.1:+28980242 MS.gene040588:CDS
TTGCAGACAATCTCCAAAGT+GGG 0.558280 2.1:+28980349 MS.gene040588:CDS
TTTCACTCCAGGACTGAAAG+AGG 0.560173 2.1:-28979919 None:intergenic
ATGGTTAAGTTCAATAGAAG+CGG 0.567320 2.1:-28981988 None:intergenic
TTTCAGTCCCTCCTTTACCA+TGG 0.569781 2.1:-28978950 None:intergenic
TCTGGATGTGATTATTTACA+GGG 0.570759 2.1:+28980949 MS.gene040588:CDS
TCAAGGTGAACCAGTATCAA+GGG 0.573541 2.1:+28979362 MS.gene040588:CDS
ATTAGTGGAAGCATGTAAGT+TGG 0.575824 2.1:+28978789 MS.gene040588:CDS
ATTGGAGAAACAAATATCCA+TGG 0.576382 2.1:+28978933 MS.gene040588:CDS
GAAACATACCATTTCACTCC+AGG 0.577863 2.1:-28979930 None:intergenic
GATATGAAGTTCACTCTCAT+GGG 0.583514 2.1:-28979067 None:intergenic
ACCATAAAATAAGACAACAT+TGG 0.584841 2.1:-28979769 None:intergenic
ATGATACATCTTTGATACTG+TGG 0.585455 2.1:-28979594 None:intergenic
GCGACTCATTGTAGCAAATG+GGG 0.586804 2.1:+28980046 MS.gene040588:CDS
TGTATTATCTGATATACTGA+AGG 0.587784 2.1:+28979440 MS.gene040588:CDS
ACCTCTCTACTAAATTGCAA+AGG 0.591394 2.1:-28979843 None:intergenic
CAAACAGGGAACCTAGATGA+AGG 0.594928 2.1:-28978231 None:intergenic
TACTTGATGTGAGGACAGCA+AGG 0.595534 2.1:-28978007 None:intergenic
AACCCACAAACAACCAGAAG+GGG 0.597408 2.1:-28981676 None:intergenic
ACTTACTGATTACGTGTGCA+TGG 0.599009 2.1:+28979091 MS.gene040588:CDS
ACTTTGTGAACATGCATATG+TGG 0.600186 2.1:-28980916 None:intergenic
GTTAAGCATGGCATCAAATG+TGG 0.600853 2.1:+28977909 None:intergenic
TTGCTCTGAGGAGTTATGTG+TGG 0.604086 2.1:+28978986 MS.gene040588:CDS
TAATACAGATCTAGCATGTG+AGG 0.610195 2.1:-28979424 None:intergenic
TGCAACTTCTACTTGATGTG+AGG 0.612048 2.1:-28978016 None:intergenic
TGCTCTGAGGAGTTATGTGT+GGG 0.613589 2.1:+28978987 MS.gene040588:CDS
GGGTGGCTTACAATTCATTG+TGG 0.615987 2.1:+28979018 MS.gene040588:CDS
CTCATGATGTTCGGATAGAG+GGG 0.616659 2.1:+28978534 MS.gene040588:CDS
GATGTATCATAGAAAGCAGA+GGG 0.617898 2.1:+28979607 MS.gene040588:CDS
TAACCCACAAACAACCAGAA+GGG 0.618235 2.1:-28981677 None:intergenic
AATAACACCATGAACACTCA+CGG 0.621202 2.1:-28980072 None:intergenic
CAAATATCCATGGTAAAGGA+GGG 0.623502 2.1:+28978943 MS.gene040588:CDS
TGTGAGGAAATATAATTACA+TGG 0.628481 2.1:-28979408 None:intergenic
TTTGCAGACAATCTCCAAAG+TGG 0.628783 2.1:+28980348 MS.gene040588:CDS
TCAGATCAGGAATGCAAGAG+AGG 0.630141 2.1:+28980977 MS.gene040588:CDS
TTAACCCACAAACAACCAGA+AGG 0.634727 2.1:-28981678 None:intergenic
TTTCAATTAGAAGATTAAGG+AGG 0.635301 2.1:-28978876 None:intergenic
ATGTGTGGGACGTTCTTGGG+TGG 0.646051 2.1:+28979001 MS.gene040588:CDS
CTACTAGATAGCACTTCTGA+AGG 0.647267 2.1:-28980122 None:intergenic
AGATGTATCATAGAAAGCAG+AGG 0.653768 2.1:+28979606 MS.gene040588:CDS
ATTGGTAAAGGAGACTGGGA+AGG 0.660276 2.1:+28979744 MS.gene040588:CDS
CCTCTATCCGAACATCATGA+GGG 0.663643 2.1:-28978532 None:intergenic
AAATTCAAAGCAGTAGCACA+AGG 0.669590 2.1:-28978042 None:intergenic
TGCAGACAATCTCCAAAGTG+GGG 0.673141 2.1:+28980350 MS.gene040588:CDS
TCAATTATCATGTTGCTCTG+AGG 0.675945 2.1:+28978974 MS.gene040588:CDS
ACCCACAAACAACCAGAAGG+GGG 0.681171 2.1:-28981675 None:intergenic
GTTCAACATCATTACAAACA+GGG 0.689432 2.1:-28978245 None:intergenic
TTAAAAGTGATGGATTTGTG+TGG 0.698912 2.1:+28978682 MS.gene040588:CDS
TAGACAAGATCCAACAAACA+CGG 0.705372 2.1:-28977973 None:intergenic
TATTCATGTAGAAAGGCCAG+AGG 0.722961 2.1:+28979674 MS.gene040588:CDS
TCTCATGGGTATAACTACAG+GGG 0.729707 2.1:-28979053 None:intergenic
TTTGTGGGATGAGAGAGACA+GGG 0.753747 2.1:+28978728 MS.gene040588:CDS
GTTCGAAATATAAAAGACCG+CGG 0.753888 2.1:+28978144 MS.gene040588:CDS
ATTCAATCTTCTGTGCACCG+CGG 0.760395 2.1:-28978161 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTATATTTCTAAAATTTCA+TGG + chr2.1:28979213-28979232 MS.gene040588:intron 10.0%
!! AAGTCATACAAAAATAATAA+TGG - chr2.1:28979132-28979151 None:intergenic 15.0%
!! AATAAATATGGAAATAAACA+TGG - chr2.1:28980516-28980535 None:intergenic 15.0%
!!! AACTTGTTATTAACTTAATT+GGG + chr2.1:28979550-28979569 MS.gene040588:CDS 15.0%
!!! AATTTTAGAAATATAATCAG+TGG - chr2.1:28979210-28979229 None:intergenic 15.0%
!!! TATTTTCAATTAGAAGATTA+AGG - chr2.1:28978882-28978901 None:intergenic 15.0%
!!! TCTTATATTCTAAGTTATTT+TGG + chr2.1:28979951-28979970 MS.gene040588:CDS 15.0%
!!! TTGTTTTATATGATAAACAT+TGG + chr2.1:28978591-28978610 MS.gene040588:intron 15.0%
!! AACATTTGTTTAAGTAGTTT+AGG + chr2.1:28980787-28980806 MS.gene040588:intron 20.0%
!! ACATTAACATTTCATAAAGA+TGG - chr2.1:28981359-28981378 None:intergenic 20.0%
!! AGAAAATTGTTTAAAAGTGA+TGG + chr2.1:28978672-28978691 MS.gene040588:CDS 20.0%
!! ATTGTTGGAATATGTATATT+TGG + chr2.1:28980238-28980257 MS.gene040588:CDS 20.0%
!! CAAACAATACTTTATCAAAT+AGG - chr2.1:28981256-28981275 None:intergenic 20.0%
!! CAATTAAGTTAATAACAAGT+TGG - chr2.1:28979551-28979570 None:intergenic 20.0%
!! GGCAATTAAAATAATCAAAA+TGG + chr2.1:28981839-28981858 MS.gene040588:CDS 20.0%
!! TATATGGAAGGAAATAAATA+TGG - chr2.1:28980528-28980547 None:intergenic 20.0%
!! TCTGTAAAATATCAATTTCA+AGG - chr2.1:28980563-28980582 None:intergenic 20.0%
!! TTCAAACTTAATCTAAGAAT+TGG + chr2.1:28981310-28981329 MS.gene040588:intron 20.0%
!! TTGTTGGAATATGTATATTT+GGG + chr2.1:28980239-28980258 MS.gene040588:CDS 20.0%
!!! AAATGTTTTTTGTTTTGTTG+AGG - chr2.1:28978380-28978399 None:intergenic 20.0%
!!! AATGTTTTTTGTTTTGTTGA+GGG - chr2.1:28978379-28978398 None:intergenic 20.0%
!!! AGAATTTAATTTGAACATCT+AGG - chr2.1:28981082-28981101 None:intergenic 20.0%
!!! ATATGAACAATAACTTTTCA+GGG - chr2.1:28979520-28979539 None:intergenic 20.0%
!!! CAACTCTTATTTGAAAAATA+CGG - chr2.1:28980592-28980611 None:intergenic 20.0%
!!! CAACTTGTTATTAACTTAAT+TGG + chr2.1:28979549-28979568 MS.gene040588:CDS 20.0%
!!! CACTTTTAAACAATTTTCTT+GGG - chr2.1:28978671-28978690 None:intergenic 20.0%
!!! CTAAGTTATTTTGGATTTTA+TGG + chr2.1:28979960-28979979 MS.gene040588:CDS 20.0%
!!! CTATTTGATAAAGTATTGTT+TGG + chr2.1:28981254-28981273 MS.gene040588:intron 20.0%
!!! TCACTTTTAAACAATTTTCT+TGG - chr2.1:28978672-28978691 None:intergenic 20.0%
!!! TCTGTTAACTTTAAATTTTG+TGG + chr2.1:28981515-28981534 MS.gene040588:intron 20.0%
! AAAATGACAAGTCAATAAAC+TGG - chr2.1:28980715-28980734 None:intergenic 25.0%
! ACCATAAAATAAGACAACAT+TGG - chr2.1:28979772-28979791 None:intergenic 25.0%
! AGATTCTTCTAGATATCTAT+AGG + chr2.1:28980453-28980472 MS.gene040588:intron 25.0%
! ATCCTTAAAAATTAGAAGCA+AGG + chr2.1:28981453-28981472 MS.gene040588:intron 25.0%
! CAGGGATAATATATAATCTA+GGG - chr2.1:28979502-28979521 None:intergenic 25.0%
! CATCAAAAATCAAAAGCAAA+GGG - chr2.1:28981398-28981417 None:intergenic 25.0%
! CTATAAACTGGATAATAGAA+TGG - chr2.1:28980671-28980690 None:intergenic 25.0%
! CTCATGAAAATTTAAGAACA+TGG + chr2.1:28981124-28981143 MS.gene040588:intron 25.0%
! GACAAAAGTAAATGTTTGTT+AGG - chr2.1:28978637-28978656 None:intergenic 25.0%
! GACTGCAATAATAAATAACA+AGG - chr2.1:28981572-28981591 None:intergenic 25.0%
! GGACAATTTCTCATAAAAAA+TGG - chr2.1:28981484-28981503 None:intergenic 25.0%
! GTAATGATATTCATGTAGAA+AGG + chr2.1:28979667-28979686 MS.gene040588:CDS 25.0%
! TAATGGAAGCTAAATTGAAT+GGG + chr2.1:28980854-28980873 MS.gene040588:CDS 25.0%
! TATAGATATCTAGAAGAATC+TGG - chr2.1:28980454-28980473 None:intergenic 25.0%
! TATATTTCGAACAATGCAAA+TGG - chr2.1:28978136-28978155 None:intergenic 25.0%
! TCAGGGATAATATATAATCT+AGG - chr2.1:28979503-28979522 None:intergenic 25.0%
! TCATCAAAAATCAAAAGCAA+AGG - chr2.1:28981399-28981418 None:intergenic 25.0%
! TGTATTATCTGATATACTGA+AGG + chr2.1:28979440-28979459 MS.gene040588:CDS 25.0%
! TGTGAGGAAATATAATTACA+TGG - chr2.1:28979411-28979430 None:intergenic 25.0%
! TTAGAAATATAATCAGTGGT+AGG - chr2.1:28979206-28979225 None:intergenic 25.0%
! TTTATATCTTATCTTGACCA+GGG + chr2.1:28981171-28981190 MS.gene040588:intron 25.0%
! TTTCAATTAGAAGATTAAGG+AGG - chr2.1:28978879-28978898 None:intergenic 25.0%
!! AATGAATTTTCCAAAAGGAT+TGG + chr2.1:28979990-28980009 MS.gene040588:CDS 25.0%
!! ACAGAAGATTGAATATTTTG+TGG + chr2.1:28978170-28978189 MS.gene040588:CDS 25.0%
!! ATAATGGAAGCTAAATTGAA+TGG + chr2.1:28980853-28980872 MS.gene040588:CDS 25.0%
!! ATCCTTGCTTCTAATTTTTA+AGG - chr2.1:28981458-28981477 None:intergenic 25.0%
!! ATGAATTTTCCAAAAGGATT+GGG + chr2.1:28979991-28980010 MS.gene040588:CDS 25.0%
!! ATTTTCAACCAAATTCGTTT+GGG + chr2.1:28981428-28981447 MS.gene040588:intron 25.0%
!! CATATGAACAATAACTTTTC+AGG - chr2.1:28979521-28979540 None:intergenic 25.0%
!! CATTGATTAAACTAGTACAT+TGG + chr2.1:28981628-28981647 MS.gene040588:CDS 25.0%
!!! AGTTTATTGACTTGTCATTT+TGG + chr2.1:28980714-28980733 MS.gene040588:intron 25.0%
!!! ATCCTTTTGGAAAATTCATT+TGG - chr2.1:28979990-28980009 None:intergenic 25.0%
!!! ATGTTTTTTGTTTTGTTGAG+GGG - chr2.1:28978378-28978397 None:intergenic 25.0%
!!! GAAATAACAGATTGTTTTGT+TGG + chr2.1:28980158-28980177 MS.gene040588:CDS 25.0%
!!! GTTTATTGACTTGTCATTTT+GGG + chr2.1:28980715-28980734 MS.gene040588:intron 25.0%
!!! TATAAAGGTTGATATTAGCT+GGG + chr2.1:28981602-28981621 MS.gene040588:CDS 25.0%
!!! TCCAATGTTGTCTTATTTTA+TGG + chr2.1:28979768-28979787 MS.gene040588:CDS 25.0%
!!! TCCTTTTGGAAAATTCATTT+GGG - chr2.1:28979989-28980008 None:intergenic 25.0%
!!! TTATAAAGGTTGATATTAGC+TGG + chr2.1:28981601-28981620 MS.gene040588:CDS 25.0%
AAAAGGATTGAGAACAACTA+TGG + chr2.1:28978760-28978779 MS.gene040588:CDS 30.0%
AAATGTGAAGCTGCATAAAA+AGG - chr2.1:28979286-28979305 None:intergenic 30.0%
AGAAATTTGCACAACATCAA+TGG - chr2.1:28979263-28979282 None:intergenic 30.0%
AGATGAAGTAAGATTAAAGC+TGG - chr2.1:28980387-28980406 None:intergenic 30.0%
AGTATTGTTTGGAAACTCAT+TGG + chr2.1:28981265-28981284 MS.gene040588:intron 30.0%
AGTTCAACATCATTACAAAC+AGG - chr2.1:28978249-28978268 None:intergenic 30.0%
ATGATACATCTTTGATACTG+TGG - chr2.1:28979597-28979616 None:intergenic 30.0%
ATGGTTAAGTTCAATAGAAG+CGG - chr2.1:28981991-28982010 None:intergenic 30.0%
ATTGGAGAAACAAATATCCA+TGG + chr2.1:28978933-28978952 MS.gene040588:CDS 30.0%
ATTTCTACAAATGATTGTGC+AGG + chr2.1:28978493-28978512 MS.gene040588:CDS 30.0%
CAATAGAAGCGGAATAAATA+AGG - chr2.1:28981980-28981999 None:intergenic 30.0%
CAGTCATTCACAAGTTATAA+AGG + chr2.1:28981587-28981606 MS.gene040588:intron 30.0%
GAAACAAATATCCATGGTAA+AGG + chr2.1:28978939-28978958 MS.gene040588:CDS 30.0%
GATGAAGTAAGATTAAAGCT+GGG - chr2.1:28980386-28980405 None:intergenic 30.0%
GTTCAACATCATTACAAACA+GGG - chr2.1:28978248-28978267 None:intergenic 30.0%
GTTTATATCTTATCTTGACC+AGG + chr2.1:28981170-28981189 MS.gene040588:intron 30.0%
TAGTCTAAGTAATTGACACA+AGG - chr2.1:28978403-28978422 None:intergenic 30.0%
TCTATTGAACTTAACCATGA+AGG + chr2.1:28981993-28982012 MS.gene040588:CDS 30.0%
TCTGGATGTGATTATTTACA+GGG + chr2.1:28980949-28980968 MS.gene040588:CDS 30.0%
TCTTTGCCTATTATTTAAGC+TGG + chr2.1:28981099-28981118 MS.gene040588:intron 30.0%
TGAGTTCCAGCTTAAATAAT+AGG - chr2.1:28981108-28981127 None:intergenic 30.0%
TGCAAACTGTATTCCATAAA+AGG + chr2.1:28979709-28979728 MS.gene040588:CDS 30.0%
TTGGAATATGTATATTTGGG+AGG + chr2.1:28980242-28980261 MS.gene040588:CDS 30.0%
TTGTGGATGCAATTCAAAAA+TGG + chr2.1:28979304-28979323 MS.gene040588:CDS 30.0%
! ACATTTCATAAAGATGGACT+TGG - chr2.1:28981353-28981372 None:intergenic 30.0%
! ATAGTTGTTCTCAATCCTTT+TGG - chr2.1:28978761-28978780 None:intergenic 30.0%
! ATGGATATTTGTTTCTCCAA+TGG - chr2.1:28978934-28978953 None:intergenic 30.0%
! GATGCTGATGATAATTTTCA+AGG + chr2.1:28979345-28979364 MS.gene040588:CDS 30.0%
! GATTGAATATTTTGTGGAGA+TGG + chr2.1:28978176-28978195 MS.gene040588:CDS 30.0%
! GATTTTCAACCAAATTCGTT+TGG + chr2.1:28981427-28981446 MS.gene040588:intron 30.0%
! TCCCAAATGAATTTTCCAAA+AGG + chr2.1:28979985-28980004 MS.gene040588:CDS 30.0%
! TGTTTTCAGAGATGTCATAA+TGG + chr2.1:28980837-28980856 MS.gene040588:intron 30.0%
! TTGATTTTTGATGAGAAGCA+AGG + chr2.1:28981405-28981424 MS.gene040588:intron 30.0%
! TTGTTGATGCCATAATTTGT+GGG + chr2.1:28978713-28978732 MS.gene040588:CDS 30.0%
!! CAGCATCATTTTGATATATC+CGG - chr2.1:28979332-28979351 None:intergenic 30.0%
!! GTCATTTTGGGTAAAGTTAA+CGG + chr2.1:28980727-28980746 MS.gene040588:intron 30.0%
!! TGAAGCATTGATGTTATTGT+TGG + chr2.1:28980223-28980242 MS.gene040588:CDS 30.0%
!! TTAAAAGTGATGGATTTGTG+TGG + chr2.1:28978682-28978701 MS.gene040588:CDS 30.0%
!!! ACAGCTGTTTTTCTATAAAC+TGG - chr2.1:28980683-28980702 None:intergenic 30.0%
!!! TGTCTTATTTTATGGTACGT+GGG + chr2.1:28979776-28979795 MS.gene040588:CDS 30.0%
!!! TTGTCTTATTTTATGGTACG+TGG + chr2.1:28979775-28979794 MS.gene040588:CDS 30.0%
AAATTCAAAGCAGTAGCACA+AGG - chr2.1:28978045-28978064 None:intergenic 35.0%
AAGCTACTCAAGTATATGGA+AGG - chr2.1:28980540-28980559 None:intergenic 35.0%
AAGGAAGCTACTCAAGTATA+TGG - chr2.1:28980544-28980563 None:intergenic 35.0%
AAGGATATCCCAAACGAATT+TGG - chr2.1:28981439-28981458 None:intergenic 35.0%
AATAACACCATGAACACTCA+CGG - chr2.1:28980075-28980094 None:intergenic 35.0%
AATCTAACCCTCATGATGTT+CGG + chr2.1:28978525-28978544 MS.gene040588:CDS 35.0%
ACAAATATCCATGGTAAAGG+AGG + chr2.1:28978942-28978961 MS.gene040588:CDS 35.0%
ACCTCTCTACTAAATTGCAA+AGG - chr2.1:28979846-28979865 None:intergenic 35.0%
ACTTTGTGAACATGCATATG+TGG - chr2.1:28980919-28980938 None:intergenic 35.0%
AGATGTATCATAGAAAGCAG+AGG + chr2.1:28979606-28979625 MS.gene040588:CDS 35.0%
ATAAGAGTTGCGTTTCTGAA+AGG + chr2.1:28980602-28980621 MS.gene040588:intron 35.0%
ATCTTCATCACTCGTTTATC+AGG - chr2.1:28981055-28981074 None:intergenic 35.0%
ATGAAGGTGAAAAACGCTTT+AGG + chr2.1:28982009-28982028 MS.gene040588:CDS 35.0%
ATGCAATTCAAAAATGGTGC+CGG + chr2.1:28979310-28979329 MS.gene040588:CDS 35.0%
ATTAAAACAGCCCTTGATAC+TGG - chr2.1:28979375-28979394 None:intergenic 35.0%
ATTCAATTTGCAGCCATATG+TGG + chr2.1:28981722-28981741 MS.gene040588:CDS 35.0%
CAAATATCCATGGTAAAGGA+GGG + chr2.1:28978943-28978962 MS.gene040588:CDS 35.0%
CACAAAGTTATATTGCAGTC+TGG + chr2.1:28980931-28980950 MS.gene040588:CDS 35.0%
CTAAAGCTGTACACATCTTT+AGG + chr2.1:28978327-28978346 MS.gene040588:CDS 35.0%
CTCCAATGGCAAAACAATTT+CGG - chr2.1:28978920-28978939 None:intergenic 35.0%
CTTCAAGTGTGTGTATACAT+TGG + chr2.1:28979149-28979168 MS.gene040588:intron 35.0%
CTTGTTGATGCCATAATTTG+TGG + chr2.1:28978712-28978731 MS.gene040588:CDS 35.0%
GATATGAAGTTCACTCTCAT+GGG - chr2.1:28979070-28979089 None:intergenic 35.0%
GATGTATCATAGAAAGCAGA+GGG + chr2.1:28979607-28979626 MS.gene040588:CDS 35.0%
GATTGGGAACTCTCTTAATA+AGG + chr2.1:28980007-28980026 MS.gene040588:CDS 35.0%
GCAAAACAATTTCGGAAGAT+TGG - chr2.1:28978912-28978931 None:intergenic 35.0%
GCAAAGGAATGTCTAGTAAA+AGG - chr2.1:28979830-28979849 None:intergenic 35.0%
GTAAGATTAAAGCTGGGAAA+AGG - chr2.1:28980380-28980399 None:intergenic 35.0%
GTCTGGATGTGATTATTTAC+AGG + chr2.1:28980948-28980967 MS.gene040588:CDS 35.0%
GTTCGAAATATAAAAGACCG+CGG + chr2.1:28978144-28978163 MS.gene040588:CDS 35.0%
TAATACAGATCTAGCATGTG+AGG - chr2.1:28979427-28979446 None:intergenic 35.0%
TAGACAAGATCCAACAAACA+CGG - chr2.1:28977976-28977995 None:intergenic 35.0%
TCAATTATCATGTTGCTCTG+AGG + chr2.1:28978974-28978993 MS.gene040588:CDS 35.0%
TCCTTTGCAATTTAGTAGAG+AGG + chr2.1:28979842-28979861 MS.gene040588:CDS 35.0%
TCTGAAAGGACTGTTAAACT+TGG + chr2.1:28980616-28980635 MS.gene040588:intron 35.0%
TCTGATATACTGAAGGTCAT+AGG + chr2.1:28979447-28979466 MS.gene040588:CDS 35.0%
TCTTGATTCTTCTAAGCAGT+TGG + chr2.1:28981818-28981837 MS.gene040588:CDS 35.0%
TGATATGAAGTTCACTCTCA+TGG - chr2.1:28979071-28979090 None:intergenic 35.0%
TGGAATACAGTTTGCAAATG+AGG - chr2.1:28979705-28979724 None:intergenic 35.0%
TGTAGCACAAAAGCTTATAG+AGG + chr2.1:28978460-28978479 MS.gene040588:CDS 35.0%
TTTATGCAGCTTCACATTTG+TGG + chr2.1:28979287-28979306 MS.gene040588:intron 35.0%
! AGTTGGCTCAAATTACTCAT+TGG + chr2.1:28978806-28978825 MS.gene040588:CDS 35.0%
! ATTAGTGGAAGCATGTAAGT+TGG + chr2.1:28978789-28978808 MS.gene040588:CDS 35.0%
! CAACTATGGTTCTGTATTAG+TGG + chr2.1:28978774-28978793 MS.gene040588:CDS 35.0%
! GCAATCATCATATCAGGTTT+TGG + chr2.1:28978833-28978852 MS.gene040588:CDS 35.0%
! GTTGGCTCAAATTACTCATT+GGG + chr2.1:28978807-28978826 MS.gene040588:CDS 35.0%
! TTGTGCTACTGCTTTGAATT+TGG + chr2.1:28978044-28978063 MS.gene040588:CDS 35.0%
! TTTTGAGCACAATTCTGTTG+AGG + chr2.1:28978205-28978224 MS.gene040588:CDS 35.0%
!! TAAAGCGTTTTTCACCTTCA+TGG - chr2.1:28982010-28982029 None:intergenic 35.0%
!! TTCCGAAATTGTTTTGCCAT+TGG + chr2.1:28978915-28978934 MS.gene040588:CDS 35.0%
!!! CATATCAGGTTTTGGAAACA+AGG + chr2.1:28978841-28978860 MS.gene040588:CDS 35.0%
!!! CTGGATTTTGGAAAGTATTC+AGG + chr2.1:28981767-28981786 MS.gene040588:CDS 35.0%
!!! GCTGGAAGTTATTTTTCGTA+TGG + chr2.1:28980416-28980435 MS.gene040588:intron 35.0%
!!! GTCTTATTTTATGGTACGTG+GGG + chr2.1:28979777-28979796 MS.gene040588:CDS 35.0%
!!! TTCTCAATCCTTTTGGAACA+CGG - chr2.1:28978754-28978773 None:intergenic 35.0%
!!! TTTTTGTTTTGTTGAGGGGA+AGG - chr2.1:28978374-28978393 None:intergenic 35.0%
AACAAACACGGTTGCAATAG+TGG - chr2.1:28977964-28977983 None:intergenic 40.0%
ACCTGTTCTGTGGTTGATTA+AGG + chr2.1:28981202-28981221 MS.gene040588:intron 40.0%
ACTATTGCAACCGTGTTTGT+TGG + chr2.1:28977963-28977982 MS.gene040588:CDS 40.0%
ACTCTCATGGGTATAACTAC+AGG - chr2.1:28979058-28979077 None:intergenic 40.0%
ACTTCATCTCTTGATTCAGC+TGG + chr2.1:28980398-28980417 MS.gene040588:CDS 40.0%
AGTTAACAGAGCACAAGAGA+TGG - chr2.1:28981505-28981524 None:intergenic 40.0%
CTACTAGATAGCACTTCTGA+AGG - chr2.1:28980125-28980144 None:intergenic 40.0%
CTCTCATGGGTATAACTACA+GGG - chr2.1:28979057-28979076 None:intergenic 40.0%
CTCTCTCATCCCACAAATTA+TGG - chr2.1:28978725-28978744 None:intergenic 40.0%
CTTCCACAAAGAGAGCTTAT+AGG - chr2.1:28981865-28981884 None:intergenic 40.0%
GAAACATACCATTTCACTCC+AGG - chr2.1:28979933-28979952 None:intergenic 40.0%
GCACAAAAGCTTATAGAGGA+TGG + chr2.1:28978464-28978483 MS.gene040588:CDS 40.0%
GCACAACATCAATGGAATGA+AGG - chr2.1:28979255-28979274 None:intergenic 40.0%
TAACCCACAAACAACCAGAA+GGG - chr2.1:28981680-28981699 None:intergenic 40.0%
TAAGCTCTCTTTGTGGAAGT+TGG + chr2.1:28981866-28981885 MS.gene040588:CDS 40.0%
TATTCATGTAGAAAGGCCAG+AGG + chr2.1:28979674-28979693 MS.gene040588:CDS 40.0%
TCAAGGTGAACCAGTATCAA+GGG + chr2.1:28979362-28979381 MS.gene040588:CDS 40.0%
TCAGTGGTAGGAAGAAACTA+TGG - chr2.1:28979194-28979213 None:intergenic 40.0%
TCTCATGGGTATAACTACAG+GGG - chr2.1:28979056-28979075 None:intergenic 40.0%
TCTGAGTGCTACAAGTGAAA+AGG + chr2.1:28978077-28978096 MS.gene040588:CDS 40.0%
TGAACATGCATATGTGGTAC+TGG - chr2.1:28980913-28980932 None:intergenic 40.0%
TGCAACTTCTACTTGATGTG+AGG - chr2.1:28978019-28978038 None:intergenic 40.0%
TGCGACTCATTGTAGCAAAT+GGG + chr2.1:28980045-28980064 MS.gene040588:CDS 40.0%
TTAACCCACAAACAACCAGA+AGG - chr2.1:28981681-28981700 None:intergenic 40.0%
TTCAAGGTGAACCAGTATCA+AGG + chr2.1:28979361-28979380 MS.gene040588:CDS 40.0%
TTGCAGACAATCTCCAAAGT+GGG + chr2.1:28980349-28980368 MS.gene040588:CDS 40.0%
TTGCGACTCATTGTAGCAAA+TGG + chr2.1:28980044-28980063 MS.gene040588:CDS 40.0%
TTTGCAGACAATCTCCAAAG+TGG + chr2.1:28980348-28980367 MS.gene040588:CDS 40.0%
! AAAGTATTCAGGAAGCTTGC+TGG + chr2.1:28981778-28981797 MS.gene040588:CDS 40.0%
! AAGAGAGTTCCCAATCCTTT+TGG - chr2.1:28980003-28980022 None:intergenic 40.0%
! ACTTACTGATTACGTGTGCA+TGG + chr2.1:28979091-28979110 MS.gene040588:CDS 40.0%
! GCTAAATTGAATGGGCTTGT+TGG + chr2.1:28980862-28980881 MS.gene040588:CDS 40.0%
! TCCAGCAACAAGACCTTTTA+TGG - chr2.1:28979725-28979744 None:intergenic 40.0%
! TGGTTGTTTGTGGGTTAACA+TGG + chr2.1:28981683-28981702 MS.gene040588:CDS 40.0%
! TTACAGGGTTTGTTCAGATC+AGG + chr2.1:28980964-28980983 MS.gene040588:CDS 40.0%
!! AAAAGGTCTTGTTGCTGGAT+TGG + chr2.1:28979726-28979745 MS.gene040588:CDS 40.0%
!! AATTGAATGGGCTTGTTGGA+TGG + chr2.1:28980866-28980885 MS.gene040588:CDS 40.0%
!! ATTGAATGGGCTTGTTGGAT+GGG + chr2.1:28980867-28980886 MS.gene040588:CDS 40.0%
!! TCCATAAAAGGTCTTGTTGC+TGG + chr2.1:28979721-28979740 MS.gene040588:CDS 40.0%
!! TCTTGTTGCTGGATTGGTAA+AGG + chr2.1:28979732-28979751 MS.gene040588:CDS 40.0%
AAACAACCAGAAGGGGGATT+TGG - chr2.1:28981672-28981691 None:intergenic 45.0%
AACCCACAAACAACCAGAAG+GGG - chr2.1:28981679-28981698 None:intergenic 45.0%
ACAAATGATTGTGCAGGCGA+TGG + chr2.1:28978499-28978518 MS.gene040588:CDS 45.0%
AGAACAGGTTACATAGACCC+TGG - chr2.1:28981191-28981210 None:intergenic 45.0%
AGAATTGGCTGAAAGCTAGC+TGG + chr2.1:28981325-28981344 MS.gene040588:intron 45.0%
AGCCAACAAAGCTCCACATA+TGG - chr2.1:28981738-28981757 None:intergenic 45.0%
AGTTATGTGTGGGACGTTCT+TGG + chr2.1:28978997-28979016 MS.gene040588:CDS 45.0%
ATGTTCGGATAGAGGGGTTT+CGG + chr2.1:28978540-28978559 MS.gene040588:CDS 45.0%
ATTCAATCTTCTGTGCACCG+CGG - chr2.1:28978164-28978183 None:intergenic 45.0%
ATTGGTAAAGGAGACTGGGA+AGG + chr2.1:28979744-28979763 MS.gene040588:CDS 45.0%
ATTTGTGGGATGAGAGAGAC+AGG + chr2.1:28978727-28978746 MS.gene040588:CDS 45.0%
CAAACAGGGAACCTAGATGA+AGG - chr2.1:28978234-28978253 None:intergenic 45.0%
CAAATGATTGTGCAGGCGAT+GGG + chr2.1:28978500-28978519 MS.gene040588:CDS 45.0%
CCTCATGATGTTCGGATAGA+GGG + chr2.1:28978533-28978552 MS.gene040588:CDS 45.0%
CCTCTATCCGAACATCATGA+GGG - chr2.1:28978535-28978554 None:intergenic 45.0%
CTCATGATGTTCGGATAGAG+GGG + chr2.1:28978534-28978553 MS.gene040588:CDS 45.0%
CTTTCAGTCCTGGAGTGAAA+TGG + chr2.1:28979922-28979941 MS.gene040588:CDS 45.0%
GCCTTAATCAACCACAGAAC+AGG - chr2.1:28981206-28981225 None:intergenic 45.0%
GCGACTCATTGTAGCAAATG+GGG + chr2.1:28980046-28980065 MS.gene040588:CDS 45.0%
GCTCAAATTACTCATTGGGC+TGG + chr2.1:28978811-28978830 MS.gene040588:CDS 45.0%
GGGTGGCTTACAATTCATTG+TGG + chr2.1:28979018-28979037 MS.gene040588:CDS 45.0%
GGTCTATGTAACCTGTTCTG+TGG + chr2.1:28981192-28981211 MS.gene040588:intron 45.0%
GTTATGTGTGGGACGTTCTT+GGG + chr2.1:28978998-28979017 MS.gene040588:CDS 45.0%
GTTGAGGGGAAGGTAAAAGA+TGG - chr2.1:28978364-28978383 None:intergenic 45.0%
TACTTGATGTGAGGACAGCA+AGG - chr2.1:28978010-28978029 None:intergenic 45.0%
TCAGATCAGGAATGCAAGAG+AGG + chr2.1:28980977-28980996 MS.gene040588:CDS 45.0%
TGAGCACAATTCTGTTGAGG+TGG + chr2.1:28978208-28978227 MS.gene040588:CDS 45.0%
TGCAGACAATCTCCAAAGTG+GGG + chr2.1:28980350-28980369 MS.gene040588:CDS 45.0%
TGGCCTATAAGCTCTCTTTG+TGG + chr2.1:28981859-28981878 MS.gene040588:CDS 45.0%
TTTCACTCCAGGACTGAAAG+AGG - chr2.1:28979922-28979941 None:intergenic 45.0%
TTTCAGTCCCTCCTTTACCA+TGG - chr2.1:28978953-28978972 None:intergenic 45.0%
TTTGTGGGATGAGAGAGACA+GGG + chr2.1:28978728-28978747 MS.gene040588:CDS 45.0%
! ACTTCTGAAGGTAGAAGTGC+TGG - chr2.1:28980113-28980132 None:intergenic 45.0%
! AGCCATATGTGGAGCTTTGT+TGG + chr2.1:28981733-28981752 MS.gene040588:CDS 45.0%
! CTGCAAAGCATTTGCAAGAG+AGG - chr2.1:28980335-28980354 None:intergenic 45.0%
! TCGGCTTGCTCAATGTCTAT+TGG + chr2.1:28978559-28978578 MS.gene040588:CDS 45.0%
!! CTGGATTGGTAAAGGAGACT+GGG + chr2.1:28979740-28979759 MS.gene040588:CDS 45.0%
!! TATGTGGAGCTTTGTTGGCT+TGG + chr2.1:28981738-28981757 MS.gene040588:CDS 45.0%
!! TGCTCTGAGGAGTTATGTGT+GGG + chr2.1:28978987-28979006 MS.gene040588:CDS 45.0%
!! TTGCTCTGAGGAGTTATGTG+TGG + chr2.1:28978986-28979005 MS.gene040588:CDS 45.0%
!! TTTGTTGGCTTGGTGAGTTC+TGG + chr2.1:28981748-28981767 MS.gene040588:CDS 45.0%
!!! GCTTGGTGAGTTCTGGATTT+TGG + chr2.1:28981755-28981774 MS.gene040588:CDS 45.0%
ACCCACAAACAACCAGAAGG+GGG - chr2.1:28981678-28981697 None:intergenic 50.0%
AGGGGGATTTGGAAGCTCAT+CGG - chr2.1:28981661-28981680 None:intergenic 50.0%
AGTAGCACCTCTTTCAGTCC+TGG + chr2.1:28979912-28979931 MS.gene040588:CDS 50.0%
CCCTCATGATGTTCGGATAG+AGG + chr2.1:28978532-28978551 MS.gene040588:CDS 50.0%
CCCTCTATCCGAACATCATG+AGG - chr2.1:28978536-28978555 None:intergenic 50.0%
TGCAAATGAGGAGCAACCTC+TGG - chr2.1:28979693-28979712 None:intergenic 50.0%
TGTTGAGGTGGCCTTCATCT+AGG + chr2.1:28978220-28978239 MS.gene040588:CDS 50.0%
! ATCCCCCTTCTGGTTGTTTG+TGG + chr2.1:28981673-28981692 MS.gene040588:CDS 50.0%
! GGGCTGGCAATCATCATATC+AGG + chr2.1:28978827-28978846 MS.gene040588:CDS 50.0%
! TCCCCCTTCTGGTTGTTTGT+GGG + chr2.1:28981674-28981693 MS.gene040588:CDS 50.0%
!! CACGGTTGCAATAGTGGACT+CGG - chr2.1:28977958-28977977 None:intergenic 50.0%
!! GCTGGATTGGTAAAGGAGAC+TGG + chr2.1:28979739-28979758 MS.gene040588:CDS 50.0%
AGACAGGGCCGTGTTCCAAA+AGG + chr2.1:28978743-28978762 MS.gene040588:CDS 55.0%
ATGTGTGGGACGTTCTTGGG+TGG + chr2.1:28979001-28979020 MS.gene040588:CDS 55.0%
GAGCTTCCAAATCCCCCTTC+TGG + chr2.1:28981663-28981682 MS.gene040588:CDS 55.0%
GGGGATTCCGTGAGTGTTCA+TGG + chr2.1:28980065-28980084 MS.gene040588:CDS 55.0%
! GGAAAAGGTGTGCCCCACTT+TGG - chr2.1:28980365-28980384 None:intergenic 55.0%


Chromosome Type Strat End Strand Name
chr2.1 gene 28977916 28982034 28977916 ID=MS.gene040588
chr2.1 mRNA 28977916 28982034 28977916 ID=MS.gene040588.t1;Parent=MS.gene040588
chr2.1 exon 28977916 28978348 28977916 ID=MS.gene040588.t1.exon1;Parent=MS.gene040588.t1
chr2.1 CDS 28977916 28978348 28977916 ID=cds.MS.gene040588.t1;Parent=MS.gene040588.t1
chr2.1 exon 28978447 28978580 28978447 ID=MS.gene040588.t1.exon2;Parent=MS.gene040588.t1
chr2.1 CDS 28978447 28978580 28978447 ID=cds.MS.gene040588.t1;Parent=MS.gene040588.t1
chr2.1 exon 28978664 28979112 28978664 ID=MS.gene040588.t1.exon3;Parent=MS.gene040588.t1
chr2.1 CDS 28978664 28979112 28978664 ID=cds.MS.gene040588.t1;Parent=MS.gene040588.t1
chr2.1 exon 28979296 28980432 28979296 ID=MS.gene040588.t1.exon4;Parent=MS.gene040588.t1
chr2.1 CDS 28979296 28980432 28979296 ID=cds.MS.gene040588.t1;Parent=MS.gene040588.t1
chr2.1 exon 28980846 28980998 28980846 ID=MS.gene040588.t1.exon5;Parent=MS.gene040588.t1
chr2.1 CDS 28980846 28980998 28980846 ID=cds.MS.gene040588.t1;Parent=MS.gene040588.t1
chr2.1 exon 28981590 28982034 28981590 ID=MS.gene040588.t1.exon6;Parent=MS.gene040588.t1
chr2.1 CDS 28981590 28982034 28981590 ID=cds.MS.gene040588.t1;Parent=MS.gene040588.t1
Gene Sequence

>MS.gene040588

ATGGCATCAAATGTGGCAGTGAAATTAGTTTGTATTTTACCGAGTCCACTATTGCAACCGTGTTTGTTGGATCTTGTCTATTATTTATCGTCCTTGCTGTCCTCACATCAAGTAGAAGTTGCAATACCTTGTGCTACTGCTTTGAATTTGGTAATCTCAAATCTGAGTGCTACAAGTGAAAAGGCAGTTATTGAAGCACTGAAAGAAACAGAGATTTCCATTTGCATTGTTCGAAATATAAAAGACCGCGGTGCACAGAAGATTGAATATTTTGTGGAGATGGCTTCACTTTTGAGCACAATTCTGTTGAGGTGGCCTTCATCTAGGTTCCCTGTTTGTAATGATGTTGAACTTATGAAAGTTTTAGCAAACATGCTTACAAGTACAGATAGTTCTATTAAACTTGTTCTTCTAAAGCTGTACACATCTTTAGGTATTAAAATATCCATCTTTTACCTTCCCCTCAACAAAACAAAAAACATTTCCTTGTGTCAATTACTTAGACTAACTAATTTATGATTTTTGTTACAGCTTTATGTGATTCTGTAGCACAAAAGCTTATAGAGGATGGAAAAGTATTTCTACAAATGATTGTGCAGGCGATGGGAAAATCTAACCCTCATGATGTTCGGATAGAGGGGTTTCGGCTTGCTCAATGTCTATTGGTAAGAGTTATTGTTTTATATGATAAACATTGGAATATATATATAGCACTGTACCTAACAAACATTTACTTTTGTCTACTTAGAGATCCCAAGAAAATTGTTTAAAAGTGATGGATTTGTGTGGTGAAGCTCTTGTTGATGCCATAATTTGTGGGATGAGAGAGACAGGGCCGTGTTCCAAAAGGATTGAGAACAACTATGGTTCTGTATTAGTGGAAGCATGTAAGTTGGCTCAAATTACTCATTGGGCTGGCAATCATCATATCAGGTTTTGGAAACAAGGAATTGATAAAGTCCTCCTTAATCTTCTAATTGAAAATATTCATGACCAATCTTCCGAAATTGTTTTGCCATTGGAGAAACAAATATCCATGGTAAAGGAGGGACTGAAACTCAATTATCATGTTGCTCTGAGGAGTTATGTGTGGGACGTTCTTGGGTGGCTTACAATTCATTGTGGAGAAAATTCAAACCCCTGTAGTTATACCCATGAGAGTGAACTTCATATCAACTTACTGATTACGTGTGCATGGTAAGTTGTATTTCTTCCATTATTATTTTTGTATGACTTCAAGTGTGTGTATACATTGGTATTACAGTGAATTCTATGCCATAGTTTCTTCCTACCACTGATTATATTTCTAAAATTTCATGGCTGAACATTTATTACACCTTCATTCCATTGATGTTGTGCAAATTTCTCCTTTTTATGCAGCTTCACATTTGTGGATGCAATTCAAAAATGGTGCCGGATATATCAAAATGATGCTGATGATAATTTTCAAGGTGAACCAGTATCAAGGGCTGTTTTAATGATGATATATTCTCCATGTAATTATATTTCCTCACATGCTAGATCTGTATTATCTGATATACTGAAGGTCATAGGCGATGTGTACTTGAAAAACTCACTACATACCCTAGATTATATATTATCCCTGAAAAGTTATTGTTCATATGATAAACTCCAACTTGTTATTAACTTAATTGGGTTAACTTGTCTTTCAAGTTTACCACAGTATCAAAGATGTATCATAGAAAGCAGAGGGTTAAAGACTGTTTTTCTTCTCGTGCAACGATGCTTAAGTAATGATATTCATGTAGAAAGGCCAGAGGTTGCTCCTCATTTGCAAACTGTATTCCATAAAAGGTCTTGTTGCTGGATTGGTAAAGGAGACTGGGAAGGTTCCAATGTTGTCTTATTTTATGGTACGTGGGGCTTAGCTGAATTTCTTCATCAGTGTAGCCTTTTACTAGACATTCCTTTGCAATTTAGTAGAGAGGTGACAAACATTAAAACTCAGTTAGTTAACAAACTTAATGAGATCTGTAGTAGCACCTCTTTCAGTCCTGGAGTGAAATGGTATGTTTCTTATATTCTAAGTTATTTTGGATTTTATGGTTTCCCAAATGAATTTTCCAAAAGGATTGGGAACTCTCTTAATAAGGAAGAATATGCAGATTTGCGACTCATTGTAGCAAATGGGGATTCCGTGAGTGTTCATGGTGTTATTCTTGCTGTTCGATGTCCAGCACTTCTACCTTCAGAAGTGCTATCTAGTAGTAAGAGTTCTAAAGAAATAACAGATTGTTTTGTTGGAGAGACTGTGAGAGAAGTTCGCTATTCTTCTCATGTTGATTATGAAGCATTGATGTTATTGTTGGAATATGTATATTTGGGAGGCTTGCATGCTGCAGAAGAAGAAGCTGTAAAGAAGCTCAAAGTTCTTGCTAAGCGTTGTAATGTAAAGCCTCTCTTGCAAATGCTTTGCAGACAATCTCCAAAGTGGGGCACACCTTTTCCCAGCTTTAATCTTACTTCATCTCTTGATTCAGCTGGAAGTTATTTTTCGTATGGTTTGCTTCTTGACCAGATTCTTCTAGATATCTATAGGTTTCATGTGATTTGTGACATTGTGTTCTGTTGTTCATCCATGTTTATTTCCATATTTATTTCCTTCCATATACTTGAGTAGCTTCCTTGAAATTGATATTTTACAGATTCATTCCGTATTTTTCAAATAAGAGTTGCGTTTCTGAAAGGACTGTTAAACTTGGAAATCGTTACTGAGATTTGCTACGTAATGCCATTCTATTATCCAGTTTATAGAAAAACAGCTGTTAGTTATATCCAGTTTATTGACTTGTCATTTTGGGTAAAGTTAACGGTTTCTGCACAATGAAAAAAGTTAACAGTGATGTTGCTAACATTTGTTTAAGTAGTTTAGGAGATAAATTCTAATTTTGTTTAATTTCTGTTTTCAGAGATGTCATAATGGAAGCTAAATTGAATGGGCTTGTTGGATGGGCATGCGATATTTGTTCTCATCCAGTACCACATATGCATGTTCACAAAGTTATATTGCAGTCTGGATGTGATTATTTACAGGGTTTGTTCAGATCAGGAATGCAAGAGAGGTGATTATTGATTTAAAATTTGATAGTTTATGTGTAGTTTACAGTTTAGTTTTCCTGATAAACGAGTGATGAAGATGACACCTAGATGTTCAAATTAAATTCTTTGCCTATTATTTAAGCTGGAACTCATGAAAATTTAAGAACATGGTACGAAGACAGATATGCATGTTTGTTTATATCTTATCTTGACCAGGGTCTATGTAACCTGTTCTGTGGTTGATTAAGGCTCGAGACTCAAATCTTCTCTTTACAAGCCTATTTGATAAAGTATTGTTTGGAAACTCATTGGTGCATGTACTTGAATCTTGAATTTCAAACTTAATCTAAGAATTGGCTGAAAGCTAGCTGGAACCAAGTCCATCTTTATGAAATGTTAATGTATTTCACTTTGAACAGCCCTTTGCTTTTGATTTTTGATGAGAAGCAAGGATTTTCAACCAAATTCGTTTGGGATATCCTTAAAAATTAGAAGCAAGGATTTTCCATTTTTTATGAGAAATTGTCCATCTCTTGTGCTCTGTTAACTTTAAATTTTGTGGTTCTTCGCATTTTGATTGCTTTATCTGTTGTCCTTGTTATTTATTATTGCAGTCATTCACAAGTTATAAAGGTTGATATTAGCTGGGAAGCATTGATTAAACTAGTACATTGGTTTTATTCCGATGAGCTTCCAAATCCCCCTTCTGGTTGTTTGTGGGTTAACATGGATGATCAAGAAAAGCTATTCAATTTGCAGCCATATGTGGAGCTTTGTTGGCTTGGTGAGTTCTGGATTTTGGAAAGTATTCAGGAAGCTTGCTGGAATGTGATTATATCTTGTCTTGATTCTTCTAAGCAGTTGGCAATTAAAATAATCAAAATGGCCTATAAGCTCTCTTTGTGGAAGTTGGTTGACGTTGCTGCAAGTCTCATAGCTCCTTCATATAGGCAATTAAGGGATTCTGATGAACTTGAAGAATTTGATGATGCACTAGTTCACCTTATTTATTCCGCTTCTATTGAACTTAACCATGAAGGTGAAAAACGCTTTAGGTGA
Protein sequence

>MS.gene040588.t1

MASNVAVKLVCILPSPLLQPCLLDLVYYLSSLLSSHQVEVAIPCATALNLVISNLSATSEKAVIEALKETEISICIVRNIKDRGAQKIEYFVEMASLLSTILLRWPSSRFPVCNDVELMKVLANMLTSTDSSIKLVLLKLYTSLALCDSVAQKLIEDGKVFLQMIVQAMGKSNPHDVRIEGFRLAQCLLRSQENCLKVMDLCGEALVDAIICGMRETGPCSKRIENNYGSVLVEACKLAQITHWAGNHHIRFWKQGIDKVLLNLLIENIHDQSSEIVLPLEKQISMVKEGLKLNYHVALRSYVWDVLGWLTIHCGENSNPCSYTHESELHINLLITCACFTFVDAIQKWCRIYQNDADDNFQGEPVSRAVLMMIYSPCNYISSHARSVLSDILKVIGDVYLKNSLHTLDYILSLKSYCSYDKLQLVINLIGLTCLSSLPQYQRCIIESRGLKTVFLLVQRCLSNDIHVERPEVAPHLQTVFHKRSCCWIGKGDWEGSNVVLFYGTWGLAEFLHQCSLLLDIPLQFSREVTNIKTQLVNKLNEICSSTSFSPGVKWYVSYILSYFGFYGFPNEFSKRIGNSLNKEEYADLRLIVANGDSVSVHGVILAVRCPALLPSEVLSSSKSSKEITDCFVGETVREVRYSSHVDYEALMLLLEYVYLGGLHAAEEEAVKKLKVLAKRCNVKPLLQMLCRQSPKWGTPFPSFNLTSSLDSAGSYFSDVIMEAKLNGLVGWACDICSHPVPHMHVHKVILQSGCDYLQGLFRSGMQESHSQVIKVDISWEALIKLVHWFYSDELPNPPSGCLWVNMDDQEKLFNLQPYVELCWLGEFWILESIQEACWNVIISCLDSSKQLAIKIIKMAYKLSLWKLVDVAASLIAPSYRQLRDSDELEEFDDALVHLIYSASIELNHEGEKRFR