AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene040626

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene040626.t1 MTR_4g086660 97.368 38 1 0 7 44 233 270 1.36e-17 81.3
MS.gene040626.t1 MTR_8g079790 89.474 38 4 0 7 44 224 261 8.22e-16 75.9
MS.gene040626.t1 MTR_3g092230 78.947 38 8 0 7 44 234 271 2.15e-14 72.0
MS.gene040626.t1 MTR_5g017830 78.947 38 8 0 7 44 230 267 4.25e-14 70.9
MS.gene040626.t1 MTR_7g118020 76.316 38 9 0 7 44 240 277 1.33e-13 69.7
MS.gene040626.t1 MTR_7g089480 76.316 38 9 0 7 44 237 274 2.17e-13 68.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene040626.t1 AT3G19100 92.105 38 3 0 7 44 240 277 7.93e-17 79.0
MS.gene040626.t1 AT3G50530 86.842 38 5 0 7 44 244 281 7.34e-16 76.3
MS.gene040626.t1 AT3G50530 86.842 38 5 0 7 44 244 281 7.45e-16 76.3
MS.gene040626.t1 AT2G41140 89.474 38 4 0 7 44 219 256 1.42e-15 75.5
MS.gene040626.t1 AT1G49580 86.486 37 5 0 7 43 246 282 7.73e-15 73.2
MS.gene040626.t1 AT2G46700 84.211 38 6 0 7 44 58 95 9.37e-15 72.8
MS.gene040626.t1 AT2G46700 84.211 38 6 0 7 44 58 95 9.37e-15 72.8
MS.gene040626.t1 AT2G46700 86.486 37 5 0 7 43 239 275 1.42e-14 72.4
MS.gene040626.t1 AT3G56760 84.211 38 6 0 7 44 220 257 3.37e-14 71.2

Find 71 sgRNAs with CRISPR-Local

Find 157 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAATAAAATCGAGGCTTATT+TGG 0.251933 1.2:+33057817 MS.gene040626:CDS
CAGTCCTTCACGGATCAAAT+AGG 0.282424 1.2:+33057577 MS.gene040626:CDS
AGGCTTATTTGGTCACTTCC+TGG 0.306985 1.2:+33057828 MS.gene040626:CDS
GGGGAAAGTTAGACGGGTTC+TGG 0.324516 1.2:+33057548 MS.gene040626:CDS
TTCATCATCCAGAGGTCCTT+AGG 0.326981 1.2:+33057375 MS.gene040626:CDS
CCTTGTTCACTTTCGCTTCA+CGG 0.329355 1.2:+33057920 MS.gene040626:CDS
GGGCCATTTCTCCTCTCTAC+TGG 0.339583 1.2:+33057345 MS.gene040626:CDS
AGGCATCTTGTATTCCTTAT+CGG 0.346363 1.2:-33057853 None:intergenic
GGCTTATTTGGTCACTTCCT+GGG 0.357589 1.2:+33057829 MS.gene040626:CDS
GGAGGTCCCTTATGAACCTT+AGG 0.369234 1.2:+33057712 MS.gene040626:intron
CCTTAGGGTTCATCCTGATT+CGG 0.386670 1.2:+33057728 MS.gene040626:CDS
CGTCTAACTTTCCCCACATA+TGG 0.392691 1.2:-33057540 None:intergenic
ATATATCTGACTGCACAAAT+AGG 0.395800 1.2:-33056528 None:intergenic
GGCATCTTGTATTCCTTATC+GGG 0.401681 1.2:-33057852 None:intergenic
TATCGATGCGCTTGTGAATC+TGG 0.403447 1.2:+33057774 MS.gene040626:CDS
TCAACAACAGACTGAAACTT+TGG 0.406207 1.2:-33056466 None:intergenic
CGAGGGAGGAAAGCCGAATC+AGG 0.407465 1.2:-33057741 None:intergenic
TTCGCTTCACGGAGGATTCA+AGG 0.419453 1.2:+33057931 MS.gene040626:CDS
TCATCATCCAGAGGTCCTTA+GGG 0.440555 1.2:+33057376 MS.gene040626:CDS
AGTCCTTCACGGATCAAATA+GGG 0.441651 1.2:+33057578 MS.gene040626:CDS
GTCACTTCCTGGGCCCGATA+AGG 0.447271 1.2:+33057839 MS.gene040626:CDS
GATGAACCCTAAGGTTCATA+AGG 0.452955 1.2:-33057719 None:intergenic
CCTCCAGTAGAGAGGAGAAA+TGG 0.458757 1.2:-33057348 None:intergenic
CGACAAAATAGACAGATGTT+AGG 0.477186 1.2:-33057873 None:intergenic
ACTTTCCCCACATATGGATC+TGG 0.478561 1.2:-33057534 None:intergenic
GAACAGACAGCTCCGTGGTA+AGG 0.484822 1.2:-33057399 None:intergenic
GGTAAGGCCCTAAGGACCTC+TGG 0.485975 1.2:-33057383 None:intergenic
CTGGATGCAGCAGTCCTTCA+CGG 0.488893 1.2:+33057567 MS.gene040626:CDS
CAAGGAACCAGGTGATTTCA+AGG 0.489785 1.2:-33057902 None:intergenic
TTGTATTCCTTATCGGGCCC+AGG 0.508150 1.2:-33057846 None:intergenic
AGCTCCGTGGTAAGGCCCTA+AGG 0.521174 1.2:-33057391 None:intergenic
GCCTTGACCTTGAAATCACC+TGG 0.524395 1.2:+33057895 MS.gene040626:CDS
TCAATAGCCAGATCCATATG+TGG 0.536472 1.2:+33057527 MS.gene040626:intron
TGTGCACCACACCCTGAAGA+TGG 0.540977 1.2:-33056310 None:intergenic
ATTCGGCTTTCCTCCCTCGA+AGG 0.544504 1.2:+33057745 MS.gene040626:CDS
ATTTATTGCTTCTTCAGAGG+AGG 0.547525 1.2:+33056224 MS.gene040626:CDS
TATTTGTACCATGACAGCCT+TGG 0.549299 1.2:-33056267 None:intergenic
CATATGTGGGGAAAGTTAGA+CGG 0.550206 1.2:+33057541 MS.gene040626:CDS
ATGATTTATTGCTTCTTCAG+AGG 0.551860 1.2:+33056221 MS.gene040626:CDS
ACCAGGTGATTTCAAGGTCA+AGG 0.552585 1.2:-33057896 None:intergenic
CAATAGCCAGATCCATATGT+GGG 0.554837 1.2:+33057528 MS.gene040626:intron
AGATGATGCCAAGGCTGTCA+TGG 0.554908 1.2:+33056259 MS.gene040626:CDS
TAGGATCCATGCACTTCTAT+CGG 0.555019 1.2:-33056509 None:intergenic
CATCGATACACTAACCTTCG+AGG 0.556527 1.2:-33057759 None:intergenic
TTTATTGCTTCTTCAGAGGA+GGG 0.559234 1.2:+33056225 MS.gene040626:CDS
ATGAACCCTAAGGTTCATAA+GGG 0.562825 1.2:-33057718 None:intergenic
CCATTTCTCCTCTCTACTGG+AGG 0.564387 1.2:+33057348 MS.gene040626:CDS
GAGGTCCCTTATGAACCTTA+GGG 0.567860 1.2:+33057713 MS.gene040626:CDS
CCGTGAAGCGAAAGTGAACA+AGG 0.569884 1.2:-33057920 None:intergenic
AAAGTTTCAGTCTGTTGTTG+AGG 0.571170 1.2:+33056468 MS.gene040626:CDS
TGGCCCTATTTGATCCGTGA+AGG 0.586180 1.2:-33057581 None:intergenic
GCGAAAGTGAACAAGGAACC+AGG 0.587193 1.2:-33057913 None:intergenic
TGAAACTTTGGTGTAAGCAT+AGG 0.589679 1.2:-33056454 None:intergenic
ATATGTGGGGAAAGTTAGAC+GGG 0.595434 1.2:+33057542 MS.gene040626:CDS
CCGAATCAGGATGAACCCTA+AGG 0.601275 1.2:-33057728 None:intergenic
ATCGATACACTAACCTTCGA+GGG 0.607364 1.2:-33057758 None:intergenic
ATACTCAGAAGATGATGCCA+AGG 0.618920 1.2:+33056250 MS.gene040626:CDS
TGAAGAAGCCTCCAGTAGAG+AGG 0.618944 1.2:-33057356 None:intergenic
GAATCTGGTGGAACCTGTGA+AGG 0.627353 1.2:+33057789 MS.gene040626:CDS
GTTGAGGATAGCAGCAGATG+CGG 0.641502 1.2:+33056484 MS.gene040626:CDS
GCGGTACCGATAGAAGTGCA+TGG 0.643356 1.2:+33056503 MS.gene040626:CDS
CGATGCGCTTGTGAATCTGG+TGG 0.658134 1.2:+33057777 MS.gene040626:CDS
GCACAGAGATCTTAAGCCTG+AGG 0.658568 1.2:+33056328 MS.gene040626:CDS
GAGGCTTCTTCATCATCCAG+AGG 0.661853 1.2:+33057367 MS.gene040626:CDS
CGCAAGGTTTAGGATCAAAG+AGG 0.664838 1.2:-33057424 None:intergenic
GATACACTAACCTTCGAGGG+AGG 0.685791 1.2:-33057755 None:intergenic
AAGGCAGCAAAATAAAATCG+AGG 0.694396 1.2:+33057808 MS.gene040626:CDS
TGTTCACTTTCGCTTCACGG+AGG 0.696476 1.2:+33057923 MS.gene040626:CDS
AATAGCCAGATCCATATGTG+GGG 0.705188 1.2:+33057529 MS.gene040626:intron
AGGTCCTTAGGGCCTTACCA+CGG 0.721778 1.2:+33057387 MS.gene040626:CDS
AGGTAGAACAGACAGCTCCG+TGG 0.756451 1.2:-33057404 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATAATATAATTATTTAAAT+TGG + chr1.2:33056773-33056792 MS.gene040626:intron 0.0%
!! AAATAAAATAAAATTGAATG+GGG - chr1.2:33056811-33056830 None:intergenic 10.0%
!! AATCATATTTAAATATCTTA+GGG + chr1.2:33056409-33056428 MS.gene040626:intron 10.0%
!! TAATCATATTTAAATATCTT+AGG + chr1.2:33056408-33056427 MS.gene040626:intron 10.0%
!!! ATATTACTTAATCTAATTTT+TGG + chr1.2:33056598-33056617 MS.gene040626:intron 10.0%
!!! TAAAAATCTTTTCAGATTTA+GGG + chr1.2:33057325-33057344 MS.gene040626:intron 15.0%
!!! TTAAAAATCTTTTCAGATTT+AGG + chr1.2:33057324-33057343 MS.gene040626:intron 15.0%
!! GTAATATTCCTAAATATTGT+TGG - chr1.2:33056585-33056604 None:intergenic 20.0%
! AAATAAAATCGAGGCTTATT+TGG + chr1.2:33057817-33057836 MS.gene040626:CDS 25.0%
! CAGATATATCTATTGTAATG+AGG + chr1.2:33056542-33056561 MS.gene040626:intron 25.0%
!! TTTGATGATACTTGATGTAT+TGG + chr1.2:33057611-33057630 MS.gene040626:intron 25.0%
!!! AAGTATCATCAAAAAGTACT+TGG - chr1.2:33057604-33057623 None:intergenic 25.0%
!!! GCATTTTACGACTTTTAAAA+TGG - chr1.2:33057063-33057082 None:intergenic 25.0%
!!! TTCAATATTCTGTATCGATT+TGG + chr1.2:33057491-33057510 MS.gene040626:intron 25.0%
ATATATCTGACTGCACAAAT+AGG - chr1.2:33056531-33056550 None:intergenic 30.0%
ATGATTTATTGCTTCTTCAG+AGG + chr1.2:33056221-33056240 MS.gene040626:CDS 30.0%
ATGCAATCAAACAAGTGTTA+TGG + chr1.2:33057079-33057098 MS.gene040626:intron 30.0%
TATTCCTAAATATTGTTGGC+CGG - chr1.2:33056581-33056600 None:intergenic 30.0%
TCAAACAAAGTTCACAAATG+AGG - chr1.2:33057235-33057254 None:intergenic 30.0%
TCTTTCATTTGTCTTTCAGA+TGG + chr1.2:33056360-33056379 MS.gene040626:intron 30.0%
TGAAAAACCAATACACTAGT+GGG - chr1.2:33056645-33056664 None:intergenic 30.0%
TTGAAAAACCAATACACTAG+TGG - chr1.2:33056646-33056665 None:intergenic 30.0%
!!! AGTTTTCACTTGGTTTTGAA+GGG - chr1.2:33056880-33056899 None:intergenic 30.0%
AAAGTTTCAGTCTGTTGTTG+AGG + chr1.2:33056468-33056487 MS.gene040626:CDS 35.0%
AACATTTGCGAATGTTGTGA+AGG + chr1.2:33056845-33056864 MS.gene040626:intron 35.0%
AAGGCAGCAAAATAAAATCG+AGG + chr1.2:33057808-33057827 MS.gene040626:CDS 35.0%
ACATTTGCGAATGTTGTGAA+GGG + chr1.2:33056846-33056865 MS.gene040626:intron 35.0%
AGGCATCTTGTATTCCTTAT+CGG - chr1.2:33057856-33057875 None:intergenic 35.0%
ATAAGAAACAGAAGGTGATC+CGG - chr1.2:33057278-33057297 None:intergenic 35.0%
ATGAACCCTAAGGTTCATAA+GGG - chr1.2:33057721-33057740 None:intergenic 35.0%
ATGATTACCCACTAGTGTAT+TGG + chr1.2:33056635-33056654 MS.gene040626:intron 35.0%
ATTTATTGCTTCTTCAGAGG+AGG + chr1.2:33056224-33056243 MS.gene040626:CDS 35.0%
CGACAAAATAGACAGATGTT+AGG - chr1.2:33057876-33057895 None:intergenic 35.0%
TCAACAACAGACTGAAACTT+TGG - chr1.2:33056469-33056488 None:intergenic 35.0%
TTGTGGCAATAAGAAACAGA+AGG - chr1.2:33057286-33057305 None:intergenic 35.0%
TTTATTGCTTCTTCAGAGGA+GGG + chr1.2:33056225-33056244 MS.gene040626:CDS 35.0%
! GCAAATGAAGAGTTTTCACT+TGG - chr1.2:33056890-33056909 None:intergenic 35.0%
! TGAAACTTTGGTGTAAGCAT+AGG - chr1.2:33056457-33056476 None:intergenic 35.0%
! TTTTCCGGCCAACAATATTT+AGG + chr1.2:33056574-33056593 MS.gene040626:intron 35.0%
!!! GAGTTTTCACTTGGTTTTGA+AGG - chr1.2:33056881-33056900 None:intergenic 35.0%
!!! GTTTTCACTTGGTTTTGAAG+GGG - chr1.2:33056879-33056898 None:intergenic 35.0%
!!! TTTTATTTTGCTGCCTTCAC+AGG - chr1.2:33057805-33057824 None:intergenic 35.0%
!!! TTTTTTTCCACGCAAGGTTT+AGG - chr1.2:33057437-33057456 None:intergenic 35.0%
AACTCTTCATTTGCGACTGT+TGG + chr1.2:33056896-33056915 MS.gene040626:intron 40.0%
AATAGCCAGATCCATATGTG+GGG + chr1.2:33057529-33057548 MS.gene040626:intron 40.0%
ACTCTTCATTTGCGACTGTT+GGG + chr1.2:33056897-33056916 MS.gene040626:intron 40.0%
AGTCCTTCACGGATCAAATA+GGG + chr1.2:33057578-33057597 MS.gene040626:CDS 40.0%
ATACTCAGAAGATGATGCCA+AGG + chr1.2:33056250-33056269 MS.gene040626:CDS 40.0%
ATATGTGGGGAAAGTTAGAC+GGG + chr1.2:33057542-33057561 MS.gene040626:CDS 40.0%
ATCGATACACTAACCTTCGA+GGG - chr1.2:33057761-33057780 None:intergenic 40.0%
ATGCAACAACATTCAGACAG+TGG + chr1.2:33057465-33057484 MS.gene040626:intron 40.0%
CAATAGCCAGATCCATATGT+GGG + chr1.2:33057528-33057547 MS.gene040626:intron 40.0%
CATATGTGGGGAAAGTTAGA+CGG + chr1.2:33057541-33057560 MS.gene040626:CDS 40.0%
CCAACTACTTGTAGACAAAG+AGG - chr1.2:33057683-33057702 None:intergenic 40.0%
CCTCTTTGTCTACAAGTAGT+TGG + chr1.2:33057680-33057699 MS.gene040626:intron 40.0%
GATGAACCCTAAGGTTCATA+AGG - chr1.2:33057722-33057741 None:intergenic 40.0%
GGCATCTTGTATTCCTTATC+GGG - chr1.2:33057855-33057874 None:intergenic 40.0%
TAGGATCCATGCACTTCTAT+CGG - chr1.2:33056512-33056531 None:intergenic 40.0%
TATTTGTACCATGACAGCCT+TGG - chr1.2:33056270-33056289 None:intergenic 40.0%
TCAATAGCCAGATCCATATG+TGG + chr1.2:33057527-33057546 MS.gene040626:intron 40.0%
TCACAAATGAGGAGAAGAAG+TGG - chr1.2:33057224-33057243 None:intergenic 40.0%
TGAAAGAATATGCTCACCTC+AGG - chr1.2:33056347-33056366 None:intergenic 40.0%
TGCAACAACATTCAGACAGT+GGG + chr1.2:33057466-33057485 MS.gene040626:intron 40.0%
! AACTATCGCAACACCTTTTG+TGG + chr1.2:33056920-33056939 MS.gene040626:intron 40.0%
! ACTTTGTTTGACGCGCAATA+TGG + chr1.2:33057244-33057263 MS.gene040626:intron 40.0%
! ATACTTGATGTATTGGCCGA+AGG + chr1.2:33057618-33057637 MS.gene040626:intron 40.0%
! ATGAGGCTCTTCAACTTTTC+CGG + chr1.2:33056559-33056578 MS.gene040626:intron 40.0%
! GTTGCATTTTGCCATCTTCA+GGG + chr1.2:33056299-33056318 MS.gene040626:CDS 40.0%
! TGTTGCATTTTGCCATCTTC+AGG + chr1.2:33056298-33056317 MS.gene040626:CDS 40.0%
!! AATCCAAGTGGGCTATTTGA+AGG - chr1.2:33057165-33057184 None:intergenic 40.0%
!! ATCCAAGTGGGCTATTTGAA+GGG - chr1.2:33057164-33057183 None:intergenic 40.0%
!!! AAGCGATTTTTTTCCACGCA+AGG - chr1.2:33057443-33057462 None:intergenic 40.0%
AAGAAAGCCCCTCAAACCTT+TGG - chr1.2:33057195-33057214 None:intergenic 45.0%
ACCAGGTGATTTCAAGGTCA+AGG - chr1.2:33057899-33057918 None:intergenic 45.0%
ACTTGGATTACGTCGACCAA+AGG + chr1.2:33057176-33057195 MS.gene040626:intron 45.0%
ACTTTCCCCACATATGGATC+TGG - chr1.2:33057537-33057556 None:intergenic 45.0%
AGGCTTATTTGGTCACTTCC+TGG + chr1.2:33057828-33057847 MS.gene040626:CDS 45.0%
CAAGGAACCAGGTGATTTCA+AGG - chr1.2:33057905-33057924 None:intergenic 45.0%
CAGTCCTTCACGGATCAAAT+AGG + chr1.2:33057577-33057596 MS.gene040626:CDS 45.0%
CATCGATACACTAACCTTCG+AGG - chr1.2:33057762-33057781 None:intergenic 45.0%
CCTTAGGGTTCATCCTGATT+CGG + chr1.2:33057728-33057747 MS.gene040626:CDS 45.0%
CCTTGTTCACTTTCGCTTCA+CGG + chr1.2:33057920-33057939 MS.gene040626:CDS 45.0%
CGTCTAACTTTCCCCACATA+TGG - chr1.2:33057543-33057562 None:intergenic 45.0%
CTTTGATCCTAAACCTTGCG+TGG + chr1.2:33057427-33057446 MS.gene040626:intron 45.0%
GAGGTCCCTTATGAACCTTA+GGG + chr1.2:33057713-33057732 MS.gene040626:CDS 45.0%
GCCACAAAAATCGCTAACTC+TGG + chr1.2:33057299-33057318 MS.gene040626:intron 45.0%
GCTGATTGCGACTGTTAGAA+GGG - chr1.2:33057041-33057060 None:intergenic 45.0%
GGCTTATTTGGTCACTTCCT+GGG + chr1.2:33057829-33057848 MS.gene040626:CDS 45.0%
GGGTGCGAAAACAAGTGTAA+TGG - chr1.2:33057144-33057163 None:intergenic 45.0%
TACGTCGACCAAAGGTTTGA+GGG + chr1.2:33057184-33057203 MS.gene040626:intron 45.0%
TATCGATGCGCTTGTGAATC+TGG + chr1.2:33057774-33057793 MS.gene040626:CDS 45.0%
TCATCATCCAGAGGTCCTTA+GGG + chr1.2:33057376-33057395 MS.gene040626:CDS 45.0%
TGGTGCGACTGTTCTATGAA+GGG + chr1.2:33056947-33056966 MS.gene040626:intron 45.0%
TTACGTCGACCAAAGGTTTG+AGG + chr1.2:33057183-33057202 MS.gene040626:intron 45.0%
TTCATCATCCAGAGGTCCTT+AGG + chr1.2:33057375-33057394 MS.gene040626:CDS 45.0%
TTGGTCGACGTAATCCAAGT+GGG - chr1.2:33057176-33057195 None:intergenic 45.0%
TTGGTGCGACTGTTCTATGA+AGG + chr1.2:33056946-33056965 MS.gene040626:intron 45.0%
TTTGGTCGACGTAATCCAAG+TGG - chr1.2:33057177-33057196 None:intergenic 45.0%
! ATTTTGCCATCTTCAGGGTG+TGG + chr1.2:33056304-33056323 MS.gene040626:CDS 45.0%
! CGCAAGGTTTAGGATCAAAG+AGG - chr1.2:33057427-33057446 None:intergenic 45.0%
! GCCAGAGTTAGCGATTTTTG+TGG - chr1.2:33057303-33057322 None:intergenic 45.0%
! TTGATGTATTGGCCGAAGGT+GGG + chr1.2:33057622-33057641 MS.gene040626:intron 45.0%
!! AAAAATAAAATAAAATTGAA+TGG - chr1.2:33056813-33056832 None:intergenic 5.0%
!! AAAATAAAATAAAATTGAAT+GGG - chr1.2:33056812-33056831 None:intergenic 5.0%
ACGTCGACCAAAGGTTTGAG+GGG + chr1.2:33057185-33057204 MS.gene040626:intron 50.0%
AGATGATGCCAAGGCTGTCA+TGG + chr1.2:33056259-33056278 MS.gene040626:CDS 50.0%
CACCCTTCAAATAGCCCACT+TGG + chr1.2:33057159-33057178 MS.gene040626:intron 50.0%
CACTGAGAAGACCTTACCCA+CGG - chr1.2:33057652-33057671 None:intergenic 50.0%
CCATTTCTCCTCTCTACTGG+AGG + chr1.2:33057348-33057367 MS.gene040626:CDS 50.0%
CCGAATCAGGATGAACCCTA+AGG - chr1.2:33057731-33057750 None:intergenic 50.0%
CCGTGAAGCGAAAGTGAACA+AGG - chr1.2:33057923-33057942 None:intergenic 50.0%
CCTCCAGTAGAGAGGAGAAA+TGG - chr1.2:33057351-33057370 None:intergenic 50.0%
GAATCTGGTGGAACCTGTGA+AGG + chr1.2:33057789-33057808 MS.gene040626:CDS 50.0%
GAGGCTTCTTCATCATCCAG+AGG + chr1.2:33057367-33057386 MS.gene040626:CDS 50.0%
GATACACTAACCTTCGAGGG+AGG - chr1.2:33057758-33057777 None:intergenic 50.0%
GCACAGAGATCTTAAGCCTG+AGG + chr1.2:33056328-33056347 MS.gene040626:CDS 50.0%
GCCTTGACCTTGAAATCACC+TGG + chr1.2:33057895-33057914 MS.gene040626:CDS 50.0%
GCGAAAGTGAACAAGGAACC+AGG - chr1.2:33057916-33057935 None:intergenic 50.0%
GCGCAATATGGACGATTTGC+CGG + chr1.2:33057256-33057275 MS.gene040626:intron 50.0%
GGAGGTCCCTTATGAACCTT+AGG + chr1.2:33057712-33057731 MS.gene040626:intron 50.0%
GGCTGATTGCGACTGTTAGA+AGG - chr1.2:33057042-33057061 None:intergenic 50.0%
GTTGAGGATAGCAGCAGATG+CGG + chr1.2:33056484-33056503 MS.gene040626:CDS 50.0%
TGAAGAAGCCTCCAGTAGAG+AGG - chr1.2:33057359-33057378 None:intergenic 50.0%
TGGCCCTATTTGATCCGTGA+AGG - chr1.2:33057584-33057603 None:intergenic 50.0%
TGTTCACTTTCGCTTCACGG+AGG + chr1.2:33057923-33057942 MS.gene040626:CDS 50.0%
TTCGCTTCACGGAGGATTCA+AGG + chr1.2:33057931-33057950 MS.gene040626:CDS 50.0%
TTGTATTCCTTATCGGGCCC+AGG - chr1.2:33057849-33057868 None:intergenic 50.0%
! CTTGATGTATTGGCCGAAGG+TGG + chr1.2:33057621-33057640 MS.gene040626:intron 50.0%
! GCAACACCTTTTGTGGCAGT+TGG + chr1.2:33056927-33056946 MS.gene040626:intron 50.0%
!! ACAAGTAGTTGGCTCGTTGC+AGG + chr1.2:33057691-33057710 MS.gene040626:intron 50.0%
ACCCACGGAAAACCCACCTT+CGG - chr1.2:33057637-33057656 None:intergenic 55.0%
AGGTAGAACAGACAGCTCCG+TGG - chr1.2:33057407-33057426 None:intergenic 55.0%
AGGTCCTTAGGGCCTTACCA+CGG + chr1.2:33057387-33057406 MS.gene040626:CDS 55.0%
ATTCGGCTTTCCTCCCTCGA+AGG + chr1.2:33057745-33057764 MS.gene040626:CDS 55.0%
CAACTGTTCCCCAACAAGCG+CGG - chr1.2:33057001-33057020 None:intergenic 55.0%
CGATGCGCTTGTGAATCTGG+TGG + chr1.2:33057777-33057796 MS.gene040626:CDS 55.0%
CTGGATGCAGCAGTCCTTCA+CGG + chr1.2:33057567-33057586 MS.gene040626:CDS 55.0%
GAACAGACAGCTCCGTGGTA+AGG - chr1.2:33057402-33057421 None:intergenic 55.0%
GGGCCATTTCTCCTCTCTAC+TGG + chr1.2:33057345-33057364 MS.gene040626:CDS 55.0%
GTCGCACCAACTGCCACAAA+AGG - chr1.2:33056936-33056955 None:intergenic 55.0%
TGTGCACCACACCCTGAAGA+TGG - chr1.2:33056313-33056332 None:intergenic 55.0%
! GGGGAAAGTTAGACGGGTTC+TGG + chr1.2:33057548-33057567 MS.gene040626:CDS 55.0%
!! AGGTGGGTTTTCCGTGGGTA+AGG + chr1.2:33057638-33057657 MS.gene040626:intron 55.0%
!! AGTAGTTGGCTCGTTGCAGG+AGG + chr1.2:33057694-33057713 MS.gene040626:intron 55.0%
!! GCGGTACCGATAGAAGTGCA+TGG + chr1.2:33056503-33056522 MS.gene040626:CDS 55.0%
ACCCCAACATCCGCGCTTGT+TGG + chr1.2:33056988-33057007 MS.gene040626:intron 60.0%
AGCTCCGTGGTAAGGCCCTA+AGG - chr1.2:33057394-33057413 None:intergenic 60.0%
CCCAACAAGCGCGGATGTTG+GGG - chr1.2:33056992-33057011 None:intergenic 60.0%
CCCCAACAAGCGCGGATGTT+GGG - chr1.2:33056993-33057012 None:intergenic 60.0%
CCCCAACATCCGCGCTTGTT+GGG + chr1.2:33056989-33057008 MS.gene040626:intron 60.0%
CGAGGGAGGAAAGCCGAATC+AGG - chr1.2:33057744-33057763 None:intergenic 60.0%
GGTAAGGCCCTAAGGACCTC+TGG - chr1.2:33057386-33057405 None:intergenic 60.0%
GTCACTTCCTGGGCCCGATA+AGG + chr1.2:33057839-33057858 MS.gene040626:CDS 60.0%
TCCCCAACAAGCGCGGATGT+TGG - chr1.2:33056994-33057013 None:intergenic 60.0%
! CCCAACATCCGCGCTTGTTG+GGG + chr1.2:33056990-33057009 MS.gene040626:intron 60.0%
!! GCCGAAGGTGGGTTTTCCGT+GGG + chr1.2:33057633-33057652 MS.gene040626:intron 60.0%
!! GGCCGAAGGTGGGTTTTCCG+TGG + chr1.2:33057632-33057651 MS.gene040626:intron 65.0%


Chromosome Type Strat End Strand Name
chr1.2 gene 33056221 33057962 33056221 ID=MS.gene040626
chr1.2 mRNA 33056221 33057962 33056221 ID=MS.gene040626.t1;Parent=MS.gene040626
chr1.2 exon 33056221 33056349 33056221 ID=MS.gene040626.t1.exon1;Parent=MS.gene040626.t1
chr1.2 CDS 33056221 33056349 33056221 ID=cds.MS.gene040626.t1;Parent=MS.gene040626.t1
chr1.2 exon 33056430 33056539 33056430 ID=MS.gene040626.t1.exon2;Parent=MS.gene040626.t1
chr1.2 CDS 33056430 33056539 33056430 ID=cds.MS.gene040626.t1;Parent=MS.gene040626.t1
chr1.2 exon 33057340 33057445 33057340 ID=MS.gene040626.t1.exon3;Parent=MS.gene040626.t1
chr1.2 CDS 33057340 33057445 33057340 ID=cds.MS.gene040626.t1;Parent=MS.gene040626.t1
chr1.2 exon 33057534 33057604 33057534 ID=MS.gene040626.t1.exon4;Parent=MS.gene040626.t1
chr1.2 CDS 33057534 33057604 33057534 ID=cds.MS.gene040626.t1;Parent=MS.gene040626.t1
chr1.2 exon 33057713 33057962 33057713 ID=MS.gene040626.t1.exon5;Parent=MS.gene040626.t1
chr1.2 CDS 33057713 33057962 33057713 ID=cds.MS.gene040626.t1;Parent=MS.gene040626.t1
Gene Sequence

>MS.gene040626

ATGATTTATTGCTTCTTCAGAGGAGGGAAATACTCAGAAGATGATGCCAAGGCTGTCATGGTACAAATACTAAATGTTGTTGCATTTTGCCATCTTCAGGGTGTGGTGCACAGAGATCTTAAGCCTGAGGTGAGCATATTCTTTCATTTGTCTTTCAGATGGTTAATGTCTTAGAGTCTGCTATATTTAATCATATTTAAATATCTTAGGGTCATATTTCTTTGTTCTTGATGCCTATGCTTACACCAAAGTTTCAGTCTGTTGTTGAGGATAGCAGCAGATGCGGTACCGATAGAAGTGCATGGATCCTATTTGTGCAGTCAGATATATCTATTGTAATGAGGCTCTTCAACTTTTCCGGCCAACAATATTTAGGAATATTACTTAATCTAATTTTTGGTAATATTATTTTGAATGATTACCCACTAGTGTATTGGTTTTTCAATGTTTAAACTATGTACTTTATCTATTGTTTTGATTGTTACTCTTGAAAGAATTATATGAATGAGATTTTGATATTTTTAGTTATATATTTCTTTATTTTAAGTATTTAATAATATAATTATTTAAATTGGCAACAAAAACTGCCCCATTCAATTTTATTTTATTTTTTTAAAAAAACTTAACATTTGCGAATGTTGTGAAGGGTCGCAAGCCCCTTCAAAACCAAGTGAAAACTCTTCATTTGCGACTGTTGGGAACTATCGCAACACCTTTTGTGGCAGTTGGTGCGACTGTTCTATGAAGGGTCGTAAAAGACAATTGCGACCCCAACATCCGCGCTTGTTGGGGAACAGTTGCAAATGTACATTTGCGACCCTTCTAACAGTCGCAATCAGCCATTTTAAAAGTCGTAAAATGCAATCAAACAAGTGTTATGGCAATTTTTATTGAGATTCTCATTCTCGAATCTCTATAAGCCATTACACTTGTTTTCGCACCCTTCAAATAGCCCACTTGGATTACGTCGACCAAAGGTTTGAGGGGCTTTCTTCTCTAACCACTTCTTCTCCTCATTTGTGAACTTTGTTTGACGCGCAATATGGACGATTTGCCGGATCACCTTCTGTTTCTTATTGCCACAAAAATCGCTAACTCTGGCGTTAAAAATCTTTTCAGATTTAGGGCCATTTCTCCTCTCTACTGGAGGCTTCTTCATCATCCAGAGGTCCTTAGGGCCTTACCACGGAGCTGTCTGTTCTACCTCTTTGATCCTAAACCTTGCGTGGAAAAAAATCGCTTTCATGCAACAACATTCAGACAGTGGGCATTCAATATTCTGTATCGATTTGGCTTCTCAACTTTTTCAATAGCCAGATCCATATGTGGGGAAAGTTAGACGGGTTCTGGATGCAGCAGTCCTTCACGGATCAAATAGGGCCAAGTACTTTTTGATGATACTTGATGTATTGGCCGAAGGTGGGTTTTCCGTGGGTAAGGTCTTCTCAGTGTTTATCGACCTCTTTGTCTACAAGTAGTTGGCTCGTTGCAGGAGGTCCCTTATGAACCTTAGGGTTCATCCTGATTCGGCTTTCCTCCCTCGAAGGTTAGTGTATCGATGCGCTTGTGAATCTGGTGGAACCTGTGAAGGCAGCAAAATAAAATCGAGGCTTATTTGGTCACTTCCTGGGCCCGATAAGGAATACAAGATGCCTAACATCTGTCTATTTTGTCGCCTTGACCTTGAAATCACCTGGTTCCTTGTTCACTTTCGCTTCACGGAGGATTCAAGGTTCCATTAG
Protein sequence

>MS.gene040626.t1

MIYCFFRGGKYSEDDAKAVMVQILNVVAFCHLQGVVHRDLKPEGHISLFLMPMLTPKFQSVVEDSSRCGTDRSAWILFVQFRAISPLYWRLLHHPEVLRALPRSCLFYLFDPKPCPDPYVGKVRRVLDAAVLHGSNRAKRSLMNLRVHPDSAFLPRRLVYRCACESGGTCEGSKIKSRLIWSLPGPDKEYKMPNICLFCRLDLEITWFLVHFRFTEDSRFH