Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene040690.t1 | KEH40804.1 | 54.2 | 419 | 33 | 3 | 1 | 278 | 1 | 401 | 1.50E-87 | 332.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene040690.t1 | Q8L3W1 | 36.1 | 108 | 63 | 2 | 7 | 108 | 4 | 111 | 1.2e-11 | 72.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene040690.t1 | A0A072VFJ7 | 54.2 | 419 | 33 | 3 | 1 | 278 | 1 | 401 | 1.1e-87 | 332.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene040690.t1 | TF | B3 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene040690.t1 | MTR_1g035570 | 54.019 | 311 | 90 | 6 | 1 | 276 | 1 | 293 | 1.33e-90 | 275 |
| MS.gene040690.t1 | MTR_1g035570 | 74.138 | 116 | 23 | 2 | 170 | 278 | 286 | 401 | 1.49e-50 | 171 |
| MS.gene040690.t1 | MTR_1g035640 | 47.586 | 290 | 134 | 8 | 1 | 275 | 1 | 287 | 6.46e-76 | 239 |
| MS.gene040690.t1 | MTR_1g035640 | 39.796 | 98 | 31 | 2 | 178 | 272 | 393 | 465 | 6.41e-11 | 62.8 |
| MS.gene040690.t1 | MTR_1g035620 | 35.836 | 293 | 151 | 6 | 1 | 271 | 1 | 278 | 1.16e-49 | 169 |
| MS.gene040690.t1 | MTR_1g035620 | 44.330 | 97 | 47 | 2 | 179 | 270 | 314 | 408 | 7.02e-16 | 77.4 |
| MS.gene040690.t1 | MTR_1g050845 | 35.461 | 282 | 155 | 7 | 1 | 271 | 1 | 266 | 2.02e-44 | 160 |
| MS.gene040690.t1 | MTR_1g035490 | 57.971 | 138 | 51 | 2 | 143 | 273 | 193 | 330 | 3.60e-44 | 152 |
| MS.gene040690.t1 | MTR_1g035520 | 31.949 | 313 | 162 | 7 | 5 | 271 | 76 | 383 | 5.46e-40 | 143 |
| MS.gene040690.t1 | MTR_1g035510 | 35.714 | 224 | 121 | 5 | 21 | 224 | 2 | 222 | 8.70e-39 | 135 |
| MS.gene040690.t1 | MTR_1g035650 | 55.046 | 109 | 45 | 1 | 1 | 105 | 1 | 109 | 7.45e-36 | 127 |
| MS.gene040690.t1 | MTR_3g061310 | 27.437 | 277 | 182 | 7 | 9 | 270 | 12 | 284 | 1.34e-30 | 116 |
| MS.gene040690.t1 | MTR_3g061370 | 26.408 | 284 | 175 | 8 | 9 | 270 | 9 | 280 | 4.66e-30 | 114 |
| MS.gene040690.t1 | MTR_3g061350 | 26.408 | 284 | 175 | 8 | 9 | 270 | 12 | 283 | 4.71e-30 | 114 |
| MS.gene040690.t1 | MTR_3g061340 | 28.070 | 285 | 161 | 11 | 9 | 271 | 12 | 274 | 5.74e-30 | 114 |
| MS.gene040690.t1 | MTR_1g035480 | 48.246 | 114 | 56 | 2 | 14 | 127 | 26 | 136 | 3.31e-29 | 109 |
| MS.gene040690.t1 | MTR_6g061070 | 28.713 | 303 | 163 | 9 | 14 | 271 | 27 | 321 | 2.24e-28 | 113 |
| MS.gene040690.t1 | MTR_6g061070 | 46.739 | 92 | 43 | 2 | 186 | 271 | 379 | 470 | 1.65e-16 | 79.3 |
| MS.gene040690.t1 | MTR_5g044670 | 30.104 | 289 | 166 | 10 | 14 | 274 | 25 | 305 | 1.53e-27 | 108 |
| MS.gene040690.t1 | MTR_1g033740 | 42.735 | 117 | 64 | 2 | 14 | 130 | 31 | 144 | 2.69e-27 | 105 |
| MS.gene040690.t1 | MTR_3g061320 | 26.812 | 276 | 179 | 8 | 9 | 270 | 12 | 278 | 6.98e-27 | 106 |
| MS.gene040690.t1 | MTR_7g050560 | 30.935 | 278 | 160 | 8 | 14 | 270 | 22 | 288 | 1.62e-26 | 105 |
| MS.gene040690.t1 | MTR_1g035500 | 44.262 | 122 | 64 | 3 | 5 | 126 | 26 | 143 | 1.91e-24 | 97.4 |
| MS.gene040690.t1 | MTR_7g050710 | 28.763 | 299 | 172 | 13 | 8 | 270 | 12 | 305 | 8.74e-24 | 98.6 |
| MS.gene040690.t1 | MTR_1g035470 | 40.909 | 110 | 62 | 2 | 21 | 130 | 2 | 108 | 7.03e-23 | 92.0 |
| MS.gene040690.t1 | MTR_3g098790 | 27.817 | 284 | 170 | 6 | 14 | 270 | 22 | 297 | 1.22e-22 | 95.5 |
| MS.gene040690.t1 | MTR_3g061330 | 28.629 | 248 | 151 | 9 | 9 | 238 | 12 | 251 | 1.34e-22 | 94.0 |
| MS.gene040690.t1 | MTR_7g050590 | 28.269 | 283 | 164 | 9 | 21 | 270 | 2 | 278 | 1.11e-21 | 92.4 |
| MS.gene040690.t1 | MTR_1g108780 | 27.113 | 284 | 167 | 9 | 20 | 270 | 12 | 288 | 1.98e-21 | 93.6 |
| MS.gene040690.t1 | MTR_6g043890 | 26.667 | 300 | 168 | 11 | 13 | 261 | 23 | 321 | 6.30e-21 | 91.3 |
| MS.gene040690.t1 | MTR_8g103940 | 27.083 | 288 | 173 | 11 | 14 | 270 | 48 | 329 | 9.64e-21 | 92.0 |
| MS.gene040690.t1 | MTR_7g050580 | 29.391 | 279 | 163 | 8 | 14 | 270 | 22 | 288 | 2.98e-20 | 89.0 |
| MS.gene040690.t1 | MTR_7g050720 | 36.301 | 146 | 85 | 4 | 1 | 138 | 1 | 146 | 3.20e-19 | 86.3 |
| MS.gene040690.t1 | MTR_3g061290 | 36.975 | 119 | 69 | 3 | 9 | 123 | 12 | 128 | 3.98e-19 | 83.6 |
| MS.gene040690.t1 | MTR_1g035460 | 25.256 | 293 | 167 | 8 | 21 | 270 | 2 | 285 | 1.14e-18 | 85.5 |
| MS.gene040690.t1 | MTR_4g119990 | 26.510 | 298 | 156 | 10 | 9 | 258 | 15 | 297 | 8.24e-16 | 77.0 |
| MS.gene040690.t1 | MTR_4g068320 | 36.634 | 101 | 58 | 2 | 7 | 101 | 4 | 104 | 1.06e-13 | 70.9 |
| MS.gene040690.t1 | MTR_1g034210 | 23.810 | 357 | 176 | 14 | 6 | 270 | 4 | 356 | 1.49e-13 | 70.5 |
| MS.gene040690.t1 | MTR_1g034240 | 34.234 | 111 | 66 | 3 | 7 | 110 | 5 | 115 | 4.65e-13 | 68.9 |
| MS.gene040690.t1 | MTR_7g050640 | 41.837 | 98 | 49 | 3 | 3 | 92 | 5 | 102 | 5.26e-13 | 64.7 |
| MS.gene040690.t1 | MTR_3g005480 | 24.809 | 262 | 159 | 7 | 14 | 270 | 30 | 258 | 6.27e-13 | 67.8 |
| MS.gene040690.t1 | MTR_1g021360 | 24.104 | 307 | 185 | 10 | 3 | 274 | 179 | 472 | 3.58e-11 | 63.5 |
| MS.gene040690.t1 | MTR_1g035440 | 35.165 | 91 | 56 | 2 | 14 | 101 | 24 | 114 | 4.90e-11 | 62.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene040690.t1 | AT3G18990 | 25.439 | 342 | 178 | 12 | 7 | 276 | 4 | 340 | 7.63e-19 | 85.9 |
| MS.gene040690.t1 | AT3G18990 | 25.294 | 340 | 177 | 12 | 7 | 274 | 4 | 338 | 9.23e-19 | 85.1 |
Find 45 sgRNAs with CRISPR-Local
Find 137 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCATTAGCTGTGCTTCTTTA+AGG | 0.068553 | 1.2:+34140057 | MS.gene040690:CDS |
| TTTGCAAAGCCTTTCAAATA+TGG | 0.180110 | 1.2:+34137838 | MS.gene040690:CDS |
| AAATATCTTGGAGTTGAAAA+TGG | 0.201158 | 1.2:+34139858 | MS.gene040690:CDS |
| TATTTCTCCACATATTTCTT+TGG | 0.248757 | 1.2:-34137703 | None:intergenic |
| TTCATCAACTGATTTGATAT+TGG | 0.261684 | 1.2:-34137944 | None:intergenic |
| AGAAATATGTGGAGAAATAT+TGG | 0.281812 | 1.2:+34137707 | MS.gene040690:CDS |
| TGGAGAGTAATGGTGATATT+TGG | 0.287546 | 1.2:+34137794 | MS.gene040690:CDS |
| GTGTTTGATGTTTCAATTGT+AGG | 0.300485 | 1.2:+34140027 | MS.gene040690:CDS |
| CTCTTAACTTTCAAATTCAT+TGG | 0.314459 | 1.2:+34137865 | MS.gene040690:CDS |
| TTAGGAAACTTAAGGAATAT+AGG | 0.318222 | 1.2:-34137745 | None:intergenic |
| CTGGTCCTTTGAGTTTGTTT+TGG | 0.330785 | 1.2:-34138129 | None:intergenic |
| AAAGAATGCAAAGTGGATAT+TGG | 0.338751 | 1.2:+34139964 | MS.gene040690:CDS |
| TAGGAAACTTAAGGAATATA+GGG | 0.346499 | 1.2:-34137744 | None:intergenic |
| AATATCTTGGAGTTGAAAAT+GGG | 0.359463 | 1.2:+34139859 | MS.gene040690:CDS |
| ACTTTCTTCACCTTCTTCAA+TGG | 0.380996 | 1.2:-34138067 | None:intergenic |
| TCATGATTCATAAACTCCTT+TGG | 0.383485 | 1.2:-34139835 | None:intergenic |
| TATGAATCATGAAAATATCT+TGG | 0.394934 | 1.2:+34139846 | MS.gene040690:CDS |
| CAACACCGTTAGGAAACTTA+AGG | 0.403140 | 1.2:-34137753 | None:intergenic |
| CCTTAAAGAAGCACAGCTAA+TGG | 0.407485 | 1.2:-34140057 | None:intergenic |
| AAGATGATCCTATGAAAATC+TGG | 0.424352 | 1.2:-34137539 | None:intergenic |
| AAATATTATGAGAGTCTTTG+TGG | 0.437608 | 1.2:+34139907 | MS.gene040690:CDS |
| AGTCTTTGTGGCTGTAAGTT+CGG | 0.438865 | 1.2:+34139919 | MS.gene040690:CDS |
| CAAACTCAAAGGACCAGAAA+TGG | 0.442400 | 1.2:+34138135 | MS.gene040690:CDS |
| TTAACTTTCAAATTCATTGG+TGG | 0.475675 | 1.2:+34137868 | MS.gene040690:CDS |
| ATAGTTTATTTCTAAAGTAT+CGG | 0.480792 | 1.2:-34137920 | None:intergenic |
| TGAAAATGGGGAGAAAATCA+TGG | 0.492046 | 1.2:+34139872 | MS.gene040690:CDS |
| TGTGGCTGTAAGTTCGGTAA+AGG | 0.504977 | 1.2:+34139925 | MS.gene040690:CDS |
| GCTGTAAGTTCGGTAAAGGT+TGG | 0.518813 | 1.2:+34139929 | MS.gene040690:CDS |
| AAGAGATATCCATATTTGAA+AGG | 0.520085 | 1.2:-34137847 | None:intergenic |
| AATGGCAAGAGAAAATTCTC+AGG | 0.523324 | 1.2:+34138153 | MS.gene040690:CDS |
| GAAGGAGCACAAGACATTCA+AGG | 0.537945 | 1.2:+34139584 | MS.gene040690:CDS |
| AATATCAAATCAGTTGATGA+AGG | 0.540855 | 1.2:+34137946 | MS.gene040690:CDS |
| GATGAGGAAGCCATTGAAGA+AGG | 0.544836 | 1.2:+34138057 | MS.gene040690:CDS |
| TACAGAAGGTCGTGATGTGA+AGG | 0.563378 | 1.2:+34139566 | MS.gene040690:intron |
| AAGTGATGAATCAAGTGATG+AGG | 0.567308 | 1.2:+34138041 | MS.gene040690:CDS |
| GGTGCTGAAGACACAGAAGA+AGG | 0.588176 | 1.2:+34137967 | MS.gene040690:CDS |
| ATATTCCTTAAGTTTCCTAA+CGG | 0.590322 | 1.2:+34137748 | MS.gene040690:CDS |
| GAGTAATGAGAGTTCAGATG+AGG | 0.591415 | 1.2:+34138098 | MS.gene040690:CDS |
| GAGGGTTCCAAAGAAATATG+TGG | 0.594786 | 1.2:+34137696 | MS.gene040690:intron |
| GTATCTGCAGTGTGTACCAA+AGG | 0.598126 | 1.2:+34139819 | MS.gene040690:intron |
| AAATACCAAAACAAACTCAA+AGG | 0.610366 | 1.2:+34138124 | MS.gene040690:CDS |
| ATTCATGAAAGAATGCAAAG+TGG | 0.613826 | 1.2:+34139957 | MS.gene040690:CDS |
| TATGTGGAGAAATATTGGAA+AGG | 0.617787 | 1.2:+34137712 | MS.gene040690:CDS |
| TTTCGTGAAGAACAAAACCC+CGG | 0.628138 | 1.2:+34139608 | MS.gene040690:CDS |
| ATATCTTGGAGTTGAAAATG+GGG | 0.639227 | 1.2:+34139860 | MS.gene040690:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CAAATATATCTAAATTTTTT+GGG | + | chr1.2:34139495-34139514 | MS.gene040690:intron | 10.0% |
| !!! | TCAAATATATCTAAATTTTT+TGG | + | chr1.2:34139494-34139513 | MS.gene040690:intron | 10.0% |
| !! | AAACTTATGAATGATTTATA+AGG | + | chr1.2:34139287-34139306 | MS.gene040690:intron | 15.0% |
| !! | AAGTTAAAAGTTAATAGAAT+GGG | - | chr1.2:34139742-34139761 | None:intergenic | 15.0% |
| !! | AATTGAATGAAAGTTAATTA+TGG | - | chr1.2:34139684-34139703 | None:intergenic | 15.0% |
| !! | ATTGAATGAAAGTTAATTAT+GGG | - | chr1.2:34139683-34139702 | None:intergenic | 15.0% |
| !! | ATTTGAATAGATTTATAGTT+AGG | - | chr1.2:34139480-34139499 | None:intergenic | 15.0% |
| !! | TAAAAAATATTTCAATTCAC+AGG | - | chr1.2:34139363-34139382 | None:intergenic | 15.0% |
| !! | TTTATGTAATTATATCTTAC+CGG | - | chr1.2:34139630-34139649 | None:intergenic | 15.0% |
| !!! | ATAGTTTATTTCTAAAGTAT+CGG | - | chr1.2:34137923-34137942 | None:intergenic | 15.0% |
| !!! | ATATTTGGTTTCAAAAAAAT+TGG | + | chr1.2:34137809-34137828 | MS.gene040690:CDS | 15.0% |
| !!! | TATTTGGTTTCAAAAAAATT+GGG | + | chr1.2:34137810-34137829 | MS.gene040690:CDS | 15.0% |
| !!! | TATTTTAAGGTTAAGATATT+TGG | + | chr1.2:34137895-34137914 | MS.gene040690:CDS | 15.0% |
| !!! | TGTTGAACAAAAAATATTTT+GGG | + | chr1.2:34137771-34137790 | MS.gene040690:CDS | 15.0% |
| !!! | TTAGATTTTATTATTGTAGA+GGG | + | chr1.2:34139197-34139216 | MS.gene040690:intron | 15.0% |
| !!! | TTATTTTAAGAGTTATTGAA+TGG | + | chr1.2:34138260-34138279 | MS.gene040690:intron | 15.0% |
| !!! | TTCTTTCTTTCTTTTTTATT+TGG | + | chr1.2:34138982-34139001 | MS.gene040690:intron | 15.0% |
| !!! | TTTAGATTTTATTATTGTAG+AGG | + | chr1.2:34139196-34139215 | MS.gene040690:intron | 15.0% |
| !! | ATAGTAACATTGAATGAAAT+TGG | - | chr1.2:34138918-34138937 | None:intergenic | 20.0% |
| !! | GAAGTTAAAAGTTAATAGAA+TGG | - | chr1.2:34139743-34139762 | None:intergenic | 20.0% |
| !! | TACAAACAAAAATATTAGTG+AGG | - | chr1.2:34139802-34139821 | None:intergenic | 20.0% |
| !! | TATGAATCATGAAAATATCT+TGG | + | chr1.2:34139846-34139865 | MS.gene040690:CDS | 20.0% |
| !! | TTATGTAATTATATCTTACC+GGG | - | chr1.2:34139629-34139648 | None:intergenic | 20.0% |
| !!! | AAACTGTGATTTTTTTTTGT+AGG | + | chr1.2:34138365-34138384 | MS.gene040690:intron | 20.0% |
| !!! | AATATATTCCAGATTTTCAT+AGG | + | chr1.2:34137531-34137550 | MS.gene040690:CDS | 20.0% |
| !!! | CTTTTAACTTCTAATGTATA+AGG | + | chr1.2:34139752-34139771 | MS.gene040690:intron | 20.0% |
| !!! | GTGTTGAACAAAAAATATTT+TGG | + | chr1.2:34137770-34137789 | MS.gene040690:CDS | 20.0% |
| ! | AAATACCAAAACAAACTCAA+AGG | + | chr1.2:34138124-34138143 | MS.gene040690:CDS | 25.0% |
| ! | AAATAGTTAATGCCTAAACT+TGG | + | chr1.2:34138487-34138506 | MS.gene040690:intron | 25.0% |
| ! | AAATATCTTGGAGTTGAAAA+TGG | + | chr1.2:34139858-34139877 | MS.gene040690:CDS | 25.0% |
| ! | AAATATTATGAGAGTCTTTG+TGG | + | chr1.2:34139907-34139926 | MS.gene040690:CDS | 25.0% |
| ! | AAGAGATATCCATATTTGAA+AGG | - | chr1.2:34137850-34137869 | None:intergenic | 25.0% |
| ! | AATATCTTGGAGTTGAAAAT+GGG | + | chr1.2:34139859-34139878 | MS.gene040690:CDS | 25.0% |
| ! | AGAAATATGTGGAGAAATAT+TGG | + | chr1.2:34137707-34137726 | MS.gene040690:CDS | 25.0% |
| ! | ATATTCCTTAAGTTTCCTAA+CGG | + | chr1.2:34137748-34137767 | MS.gene040690:CDS | 25.0% |
| ! | ATGACAAGGTTATAAAAAAG+GGG | + | chr1.2:34139076-34139095 | MS.gene040690:intron | 25.0% |
| ! | CATGACAAGGTTATAAAAAA+GGG | + | chr1.2:34139075-34139094 | MS.gene040690:intron | 25.0% |
| ! | CTCTTAACTTTCAAATTCAT+TGG | + | chr1.2:34137865-34137884 | MS.gene040690:CDS | 25.0% |
| ! | GACATTATAACTTCAAAAGA+GGG | - | chr1.2:34138583-34138602 | None:intergenic | 25.0% |
| ! | TAAAAGAAGAAACTGAAAAC+TGG | - | chr1.2:34139449-34139468 | None:intergenic | 25.0% |
| ! | TAGGAAACTTAAGGAATATA+GGG | - | chr1.2:34137747-34137766 | None:intergenic | 25.0% |
| ! | TATGTAATTATATCTTACCG+GGG | - | chr1.2:34139628-34139647 | None:intergenic | 25.0% |
| ! | TATTTCTCCACATATTTCTT+TGG | - | chr1.2:34137706-34137725 | None:intergenic | 25.0% |
| ! | TGAATGATTTATAAGGTTCT+TGG | + | chr1.2:34139294-34139313 | MS.gene040690:intron | 25.0% |
| ! | TGACATTATAACTTCAAAAG+AGG | - | chr1.2:34138584-34138603 | None:intergenic | 25.0% |
| ! | TTAACTTCTAATGTATAAGG+TGG | + | chr1.2:34139755-34139774 | MS.gene040690:intron | 25.0% |
| ! | TTAACTTTCAAATTCATTGG+TGG | + | chr1.2:34137868-34137887 | MS.gene040690:CDS | 25.0% |
| ! | TTAGGAAACTTAAGGAATAT+AGG | - | chr1.2:34137748-34137767 | None:intergenic | 25.0% |
| !! | GAACACTTGAAAGATTTTAA+TGG | + | chr1.2:34138729-34138748 | MS.gene040690:intron | 25.0% |
| !!! | AATATCAAATCAGTTGATGA+AGG | + | chr1.2:34137946-34137965 | MS.gene040690:CDS | 25.0% |
| !!! | TGAACAAAAAATATTTTGGG+TGG | + | chr1.2:34137774-34137793 | MS.gene040690:CDS | 25.0% |
| !!! | TTCATCAACTGATTTGATAT+TGG | - | chr1.2:34137947-34137966 | None:intergenic | 25.0% |
| !!! | TTTTTTTGTTATCCATGACA+AGG | + | chr1.2:34139062-34139081 | MS.gene040690:intron | 25.0% |
| AAAGAATGCAAAGTGGATAT+TGG | + | chr1.2:34139964-34139983 | MS.gene040690:CDS | 30.0% | |
| AAGATGATCCTATGAAAATC+TGG | - | chr1.2:34137542-34137561 | None:intergenic | 30.0% | |
| ACCCAGGAAAAATATTGTAT+GGG | + | chr1.2:34138813-34138832 | MS.gene040690:intron | 30.0% | |
| ACTTACAAAGAAATAGCCAT+TGG | - | chr1.2:34138617-34138636 | None:intergenic | 30.0% | |
| AGAAAACCTAGTGATTTCTT+TGG | - | chr1.2:34138966-34138985 | None:intergenic | 30.0% | |
| ATATCTTGGAGTTGAAAATG+GGG | + | chr1.2:34139860-34139879 | MS.gene040690:CDS | 30.0% | |
| ATTCATGAAAGAATGCAAAG+TGG | + | chr1.2:34139957-34139976 | MS.gene040690:CDS | 30.0% | |
| CCATGACAAGGTTATAAAAA+AGG | + | chr1.2:34139074-34139093 | MS.gene040690:intron | 30.0% | |
| GTGTTTGATGTTTCAATTGT+AGG | + | chr1.2:34140027-34140046 | MS.gene040690:CDS | 30.0% | |
| TAAACCATTACTTGAAACAG+TGG | + | chr1.2:34138685-34138704 | MS.gene040690:intron | 30.0% | |
| TAATGGAACTGCAACAATAA+GGG | + | chr1.2:34138746-34138765 | MS.gene040690:intron | 30.0% | |
| TACCCAGGAAAAATATTGTA+TGG | + | chr1.2:34138812-34138831 | MS.gene040690:intron | 30.0% | |
| TATGTGGAGAAATATTGGAA+AGG | + | chr1.2:34137712-34137731 | MS.gene040690:CDS | 30.0% | |
| TCATGATTCATAAACTCCTT+TGG | - | chr1.2:34139838-34139857 | None:intergenic | 30.0% | |
| TCATTAACAGCTTCAATCTT+AGG | - | chr1.2:34138556-34138575 | None:intergenic | 30.0% | |
| TTAATGGAACTGCAACAATA+AGG | + | chr1.2:34138745-34138764 | MS.gene040690:intron | 30.0% | |
| TTGAATTTCTTTGTTGCAGA+GGG | + | chr1.2:34137678-34137697 | MS.gene040690:intron | 30.0% | |
| TTTGAATTTCTTTGTTGCAG+AGG | + | chr1.2:34137677-34137696 | MS.gene040690:intron | 30.0% | |
| TTTGCAAAGCCTTTCAAATA+TGG | + | chr1.2:34137838-34137857 | MS.gene040690:CDS | 30.0% | |
| ! | AATGGGATTAACTTGACTAA+CGG | - | chr1.2:34139725-34139744 | None:intergenic | 30.0% |
| ! | ACCCATACAATATTTTTCCT+GGG | - | chr1.2:34138817-34138836 | None:intergenic | 30.0% |
| ! | AGAGTTATTGAATGGTTTGT+TGG | + | chr1.2:34138268-34138287 | MS.gene040690:intron | 30.0% |
| ! | GTAAATTTGAGATGATTCGA+CGG | + | chr1.2:34138889-34138908 | MS.gene040690:intron | 30.0% |
| ! | GTTGGAATTTTATGTCTGAA+AGG | + | chr1.2:34138286-34138305 | MS.gene040690:intron | 30.0% |
| !! | CATTGGTGGATCATATTTTA+AGG | + | chr1.2:34137882-34137901 | MS.gene040690:CDS | 30.0% |
| !!! | AGGTGAGTTTGATCTTTTTT+GGG | + | chr1.2:34138173-34138192 | MS.gene040690:intron | 30.0% |
| !!! | ATTTTTTGTTCAACACCGTT+AGG | - | chr1.2:34137766-34137785 | None:intergenic | 30.0% |
| !!! | CCTTTTTTATAACCTTGTCA+TGG | - | chr1.2:34139077-34139096 | None:intergenic | 30.0% |
| !!! | GATCTTTTTTGGGTAGATTT+AGG | + | chr1.2:34138183-34138202 | MS.gene040690:intron | 30.0% |
| AAGTGATGAATCAAGTGATG+AGG | + | chr1.2:34138041-34138060 | MS.gene040690:CDS | 35.0% | |
| AATGGCAAGAGAAAATTCTC+AGG | + | chr1.2:34138153-34138172 | MS.gene040690:CDS | 35.0% | |
| ACTTTCTTCACCTTCTTCAA+TGG | - | chr1.2:34138070-34138089 | None:intergenic | 35.0% | |
| CAGGAAAAATATTGTATGGG+TGG | + | chr1.2:34138816-34138835 | MS.gene040690:intron | 35.0% | |
| GAAAAATATTGTATGGGTGG+TGG | + | chr1.2:34138819-34138838 | MS.gene040690:intron | 35.0% | |
| GTTGTAAAGAAGCAAGACAT+TGG | + | chr1.2:34139116-34139135 | MS.gene040690:intron | 35.0% | |
| TATAAAAAAGGGGTCTCTTG+TGG | + | chr1.2:34139086-34139105 | MS.gene040690:intron | 35.0% | |
| TGAAAATGGGGAGAAAATCA+TGG | + | chr1.2:34139872-34139891 | MS.gene040690:CDS | 35.0% | |
| TGGAGAGTAATGGTGATATT+TGG | + | chr1.2:34137794-34137813 | MS.gene040690:CDS | 35.0% | |
| TGTGTTTATGCATGTACAGA+AGG | + | chr1.2:34139552-34139571 | MS.gene040690:intron | 35.0% | |
| TGTTCTCTTGAAAACTCACT+TGG | - | chr1.2:34138714-34138733 | None:intergenic | 35.0% | |
| ! | AGAGCAATACCCTTTACTTT+TGG | - | chr1.2:34139161-34139180 | None:intergenic | 35.0% |
| ! | CACCCATACAATATTTTTCC+TGG | - | chr1.2:34138818-34138837 | None:intergenic | 35.0% |
| ! | GTATCCACTGTTTCAAGTAA+TGG | - | chr1.2:34138692-34138711 | None:intergenic | 35.0% |
| ! | TTTTCATAGGATCATCTTGC+AGG | + | chr1.2:34137544-34137563 | MS.gene040690:CDS | 35.0% |
| !! | ATATTTTGGGTGGAGAGTAA+TGG | + | chr1.2:34137784-34137803 | MS.gene040690:CDS | 35.0% |
| !! | CAATAAGGGTTGGTAATGAA+AGG | + | chr1.2:34138760-34138779 | MS.gene040690:intron | 35.0% |
| !! | CAATACCCTTTACTTTTGGA+TGG | - | chr1.2:34139157-34139176 | None:intergenic | 35.0% |
| !! | GAATTTTCTCTTGCCATTTC+TGG | - | chr1.2:34138151-34138170 | None:intergenic | 35.0% |
| !! | TTTTCTAGCCTTCTTTACCA+TGG | - | chr1.2:34138531-34138550 | None:intergenic | 35.0% |
| !!! | CAGGTGAGTTTGATCTTTTT+TGG | + | chr1.2:34138172-34138191 | MS.gene040690:intron | 35.0% |
| AGGAGCCATCCAAAAGTAAA+GGG | + | chr1.2:34139149-34139168 | MS.gene040690:intron | 40.0% | |
| AGGTAGTAACAAAGTTGCCA+TGG | + | chr1.2:34138511-34138530 | MS.gene040690:intron | 40.0% | |
| AGTCTTTGTGGCTGTAAGTT+CGG | + | chr1.2:34139919-34139938 | MS.gene040690:CDS | 40.0% | |
| AGTTAATGCCTAAACTTGGC+AGG | + | chr1.2:34138491-34138510 | MS.gene040690:intron | 40.0% | |
| ATGTCACAATCTTACGCCAA+TGG | + | chr1.2:34138598-34138617 | MS.gene040690:intron | 40.0% | |
| CAAACTCAAAGGACCAGAAA+TGG | + | chr1.2:34138135-34138154 | MS.gene040690:CDS | 40.0% | |
| CAAAGTTGCCATGGTAAAGA+AGG | + | chr1.2:34138520-34138539 | MS.gene040690:intron | 40.0% | |
| CAACACCGTTAGGAAACTTA+AGG | - | chr1.2:34137756-34137775 | None:intergenic | 40.0% | |
| CCAAAGCCAAAGAAATCACT+AGG | + | chr1.2:34138957-34138976 | MS.gene040690:intron | 40.0% | |
| GAGGGTTCCAAAGAAATATG+TGG | + | chr1.2:34137696-34137715 | MS.gene040690:intron | 40.0% | |
| GAGTAATGAGAGTTCAGATG+AGG | + | chr1.2:34138098-34138117 | MS.gene040690:CDS | 40.0% | |
| GTAAAGAAGCAAGACATTGG+CGG | + | chr1.2:34139119-34139138 | MS.gene040690:intron | 40.0% | |
| TAGGAGCCATCCAAAAGTAA+AGG | + | chr1.2:34139148-34139167 | MS.gene040690:intron | 40.0% | |
| TGTTACTACCTGCCAAGTTT+AGG | - | chr1.2:34138502-34138521 | None:intergenic | 40.0% | |
| TTTCGTGAAGAACAAAACCC+CGG | + | chr1.2:34139608-34139627 | MS.gene040690:CDS | 40.0% | |
| ! | CCTAGTGATTTCTTTGGCTT+TGG | - | chr1.2:34138960-34138979 | None:intergenic | 40.0% |
| ! | TGTGAGGTATTATGATACCC+AGG | + | chr1.2:34138797-34138816 | MS.gene040690:intron | 40.0% |
| !! | AATATTGTATGGGTGGTGGA+TGG | + | chr1.2:34138823-34138842 | MS.gene040690:intron | 40.0% |
| !! | CTGGTCCTTTGAGTTTGTTT+TGG | - | chr1.2:34138132-34138151 | None:intergenic | 40.0% |
| !! | GTGGTGGATGGAAAATATTC+AGG | + | chr1.2:34138835-34138854 | MS.gene040690:intron | 40.0% |
| !!! | CTTTGGCTTTGGTTCGTTTT+TGG | - | chr1.2:34138949-34138968 | None:intergenic | 40.0% |
| AAGACATTGGCGGAACATCT+AGG | + | chr1.2:34139129-34139148 | MS.gene040690:intron | 45.0% | |
| GATGAGGAAGCCATTGAAGA+AGG | + | chr1.2:34138057-34138076 | MS.gene040690:CDS | 45.0% | |
| GCTGTAAGTTCGGTAAAGGT+TGG | + | chr1.2:34139929-34139948 | MS.gene040690:CDS | 45.0% | |
| GGAACTGCAACAATAAGGGT+TGG | + | chr1.2:34138750-34138769 | MS.gene040690:intron | 45.0% | |
| GTATCTGCAGTGTGTACCAA+AGG | + | chr1.2:34139819-34139838 | MS.gene040690:intron | 45.0% | |
| TACAGAAGGTCGTGATGTGA+AGG | + | chr1.2:34139566-34139585 | MS.gene040690:intron | 45.0% | |
| TGTGGCTGTAAGTTCGGTAA+AGG | + | chr1.2:34139925-34139944 | MS.gene040690:CDS | 45.0% | |
| ! | GAAGGAGCACAAGACATTCA+AGG | + | chr1.2:34139584-34139603 | MS.gene040690:CDS | 45.0% |
| !! | GGTTGGTAATGAAAGGAGTG+TGG | + | chr1.2:34138767-34138786 | MS.gene040690:intron | 45.0% |
| !! | AAAAATAATAAATACTTAAT+TGG | + | chr1.2:34138418-34138437 | MS.gene040690:intron | 5.0% |
| !! | ATTATATATATTTCTTAATT+TGG | + | chr1.2:34139259-34139278 | MS.gene040690:intron | 5.0% |
| ! | GGTGCTGAAGACACAGAAGA+AGG | + | chr1.2:34137967-34137986 | MS.gene040690:CDS | 50.0% |
| GGAGTGTGGAAGTGAGTGTG+AGG | + | chr1.2:34138781-34138800 | MS.gene040690:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.2 | gene | 34137521 | 34140077 | 34137521 | ID=MS.gene040690 |
| chr1.2 | mRNA | 34137521 | 34140077 | 34137521 | ID=MS.gene040690.t1;Parent=MS.gene040690 |
| chr1.2 | exon | 34137521 | 34137577 | 34137521 | ID=MS.gene040690.t1.exon1;Parent=MS.gene040690.t1 |
| chr1.2 | CDS | 34137521 | 34137577 | 34137521 | ID=cds.MS.gene040690.t1;Parent=MS.gene040690.t1 |
| chr1.2 | exon | 34137697 | 34138174 | 34137697 | ID=MS.gene040690.t1.exon2;Parent=MS.gene040690.t1 |
| chr1.2 | CDS | 34137697 | 34138174 | 34137697 | ID=cds.MS.gene040690.t1;Parent=MS.gene040690.t1 |
| chr1.2 | exon | 34139571 | 34139629 | 34139571 | ID=MS.gene040690.t1.exon3;Parent=MS.gene040690.t1 |
| chr1.2 | CDS | 34139571 | 34139629 | 34139571 | ID=cds.MS.gene040690.t1;Parent=MS.gene040690.t1 |
| chr1.2 | exon | 34139829 | 34140077 | 34139829 | ID=MS.gene040690.t1.exon4;Parent=MS.gene040690.t1 |
| chr1.2 | CDS | 34139829 | 34140077 | 34139829 | ID=cds.MS.gene040690.t1;Parent=MS.gene040690.t1 |
| Gene Sequence |
| Protein sequence |
