AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene040708

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene040708.t1 MTR_1g051025 97.963 491 7 3 10 500 5 492 0.0 980
MS.gene040708.t1 MTR_7g090020 77.246 501 81 7 10 500 5 482 0.0 707
MS.gene040708.t1 MTR_5g090770 33.763 388 216 9 29 409 66 419 1.61e-52 184
MS.gene040708.t1 MTR_5g090770 33.784 370 211 8 29 391 66 408 1.99e-51 184
MS.gene040708.t1 MTR_2g028950 33.333 384 229 9 11 391 44 403 2.44e-47 171
MS.gene040708.t1 MTR_2g028950 33.333 384 229 9 11 391 44 403 1.58e-46 171
MS.gene040708.t1 MTR_2g039880 30.295 373 215 8 29 393 65 400 9.08e-34 135
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene040708.t1 AT2G41370 77.912 498 77 8 10 494 6 483 0.0 714
MS.gene040708.t1 AT3G57130 73.482 494 82 7 10 499 7 455 0.0 690
MS.gene040708.t1 AT3G57130 75.610 164 39 1 10 172 7 170 2.73e-83 256
MS.gene040708.t1 AT4G19660 30.790 367 212 7 30 391 56 385 1.72e-42 160
MS.gene040708.t1 AT4G19660 30.790 367 212 7 30 391 56 385 1.87e-42 159
MS.gene040708.t1 AT5G45110 30.491 387 236 8 9 391 38 395 2.74e-40 152
MS.gene040708.t1 AT5G45110 30.491 387 236 8 9 391 38 395 3.77e-40 153
MS.gene040708.t1 AT1G64280 29.412 357 220 7 37 391 73 399 4.70e-33 132
MS.gene040708.t1 AT4G26120 30.395 329 194 7 38 363 77 373 1.80e-32 131
MS.gene040708.t1 AT4G26120 30.395 329 194 7 38 363 76 372 1.81e-32 131

Find 153 sgRNAs with CRISPR-Local

Find 290 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAACATTGGTAACCTGAATT+TGG 0.137011 1.2:-34440945 MS.gene040708:CDS
AGGTGCTTGGCTAGGATTTC+AGG 0.141453 1.2:+34441664 None:intergenic
TAGACGAAGGTCTTCGATTT+TGG 0.166923 1.2:+34441624 None:intergenic
CTCTTCAAAGGTGCTGTTCC+TGG 0.194491 1.2:-34441175 MS.gene040708:CDS
TCACTCATTGGAGGGTAAAT+TGG 0.270490 1.2:+34441016 None:intergenic
GCCTCATTCGGCGGATCTTC+TGG 0.287511 1.2:+34441515 None:intergenic
AAACACAACCTTAACTTGTT+TGG 0.298334 1.2:+34441136 None:intergenic
TCCCACCTTGTTGCCAAGTC+TGG 0.333166 1.2:-34441694 MS.gene040708:CDS
TGAAGAGAAAATCAGAGGTT+AGG 0.333207 1.2:+34441191 None:intergenic
CTAATCTTGAATCCAAATTC+AGG 0.335934 1.2:+34440933 None:intergenic
TTGTGGGCCGGACCCACCTT+CGG 0.340434 1.2:-34443876 MS.gene040708:CDS
ACCACCTTGACGACGATTCA+TGG 0.340475 1.2:+34440838 None:intergenic
GAGGATCCTCCTCCTCCTAT+TGG 0.345044 1.2:+34443845 None:intergenic
TGTGGGCCGGACCCACCTTC+GGG 0.345919 1.2:-34443875 MS.gene040708:CDS
AAACAAGTTAAGGTTGTGTT+TGG 0.350359 1.2:-34441134 MS.gene040708:CDS
GGCCGTTGATGAGAAGATTC+AGG 0.356345 1.2:+34443996 None:intergenic
AGTCAAGGGCCCGCCTCATT+CGG 0.384222 1.2:+34441503 None:intergenic
GCCTGTCTGCTACAGAGAAT+TGG 0.400340 1.2:-34444562 MS.gene040708:intron
AGGATCCTCCTCCTCCTATT+GGG 0.401164 1.2:+34443846 None:intergenic
CAACCTTGGTGCTACTCAAA+TGG 0.408123 1.2:-34440903 MS.gene040708:CDS
GGAACATGTTGTCCAAAGTT+GGG 0.412725 1.2:+34441714 None:intergenic
GGGAACATGTTGTCCAAAGT+TGG 0.416120 1.2:+34441713 None:intergenic
AGCAAGAAATGCCCCAACTT+TGG 0.416180 1.2:-34441726 MS.gene040708:CDS
GGAGGGCTTTCACCACTTCT+CGG 0.427881 1.2:+34441386 None:intergenic
AGCAAAACTGCCACCATCTC+CGG 0.432240 1.2:+34441280 None:intergenic
TTTCCAAGTTGAAGGTCGTT+TGG 0.433438 1.2:-34443954 MS.gene040708:CDS
CATCCGCAGCACCGAGTTCA+AGG 0.433898 1.2:+34441365 None:intergenic
AACTACCCGGCTGGACCCGC+CGG 0.434820 1.2:-34441340 MS.gene040708:CDS
GATGATGGTGATGGTGGTGG+TGG 0.440460 1.2:+34441566 None:intergenic
GATGATGATGGTGATGGTGG+TGG 0.443920 1.2:+34441563 None:intergenic
ACATTGAACCAAACAAGTTA+AGG 0.445023 1.2:-34441144 MS.gene040708:CDS
CCTTCATGTGGCTGCCGAGA+TGG 0.445464 1.2:-34441308 MS.gene040708:CDS
CACCCTCTCTCACCACAATT+AGG 0.446076 1.2:+34443695 None:intergenic
GAAGAGAAAATCAGAGGTTA+GGG 0.447796 1.2:+34441192 None:intergenic
CTGCTATGATCTTCACTCAT+TGG 0.449669 1.2:+34441004 None:intergenic
CGTTGATGGTGTGACACCTT+TGG 0.451435 1.2:-34441227 MS.gene040708:CDS
GACGTCACTTTCCAAGTTGA+AGG 0.452431 1.2:-34443962 MS.gene040708:CDS
CCCACAGTTAGAACCGTTGA+TGG 0.458083 1.2:-34441241 MS.gene040708:CDS
GAGGCGGGCCCTTGACTCCT+CGG 0.472933 1.2:-34441497 MS.gene040708:CDS
CACTGTACAGAAACTGCAAC+AGG 0.473588 1.2:+34443756 None:intergenic
TCTAGTCCCGAAGGTGGGTC+CGG 0.476408 1.2:+34443869 None:intergenic
GGTTCAATGTGGTTTAATCC+AGG 0.482214 1.2:+34441157 None:intergenic
TTCAGGTGGGAGACCAGACT+TGG 0.483118 1.2:+34441681 None:intergenic
GAACCAAACGACCTTCAACT+TGG 0.483511 1.2:+34443951 None:intergenic
CAAAGTATCTAGCGGCAGCT+AGG 0.487700 1.2:+34443627 None:intergenic
CGAGATGGTGTCGCCGGAGA+TGG 0.490041 1.2:-34441293 MS.gene040708:CDS
GTGGTGGTGGAGTGGCATTA+AGG 0.499723 1.2:+34441579 None:intergenic
CTAGCTGCCGCTAGATACTT+TGG 0.502823 1.2:-34443626 MS.gene040708:CDS
AGTACGACCTGGTGTCATTC+CGG 0.503385 1.2:-34443810 MS.gene040708:CDS
CCTTCGGGACTAGACCCAAT+AGG 0.503671 1.2:-34443860 MS.gene040708:CDS
CTCTCACCACAATTAGGTCT+AGG 0.504177 1.2:+34443701 None:intergenic
TTTGAGTAGCACCAAGGTTG+AGG 0.505083 1.2:+34440906 None:intergenic
GAAGATCCGCCGAATGAGGC+GGG 0.506861 1.2:-34441512 MS.gene040708:CDS
TTTCATCACATCGTCTATTG+AGG 0.507838 1.2:+34441768 None:intergenic
TAGCGGCAGCTAGGGTATCA+AGG 0.512363 1.2:+34443636 None:intergenic
TGGTGATGGTGGTGGTGGAG+TGG 0.521989 1.2:+34441571 None:intergenic
CTATGATCTTCACTCATTGG+AGG 0.522815 1.2:+34441007 None:intergenic
AATCGTCGTCAAGGTGGTCA+TGG 0.523469 1.2:-34440833 MS.gene040708:CDS
CATCATCATCACCACGACTT+TGG 0.524100 1.2:-34441550 MS.gene040708:CDS
AACGTCAATGGAGAGGTGCT+TGG 0.526797 1.2:+34441651 None:intergenic
GAGAGTGATGATACATTGTT+GGG 0.530555 1.2:+34440804 None:intergenic
AAACTCATGGTCATGGGAGA+AGG 0.530916 1.2:-34441460 MS.gene040708:CDS
AAGTGACGTCGCTGAAGGCT+TGG 0.531189 1.2:+34443975 None:intergenic
CATTAAGGAGCGGCGTGCTA+AGG 0.535278 1.2:+34441594 None:intergenic
GCGGATGTTAACTACCCGGC+TGG 0.535668 1.2:-34441349 MS.gene040708:CDS
AAAGTATCTAGCGGCAGCTA+GGG 0.539768 1.2:+34443628 None:intergenic
ACTAGTCAAACTCATGGTCA+TGG 0.542747 1.2:-34441467 MS.gene040708:CDS
GTTCGACATCCGAGGAGTCA+AGG 0.544297 1.2:+34441488 None:intergenic
AATAATAACAACAACAACAT+TGG 0.546735 1.2:-34440959 MS.gene040708:CDS
TGCTTGGCTAGGATTTCAGG+TGG 0.547432 1.2:+34441667 None:intergenic
TGAGAAGATTCAGGTAGTCA+AGG 0.548454 1.2:+34444005 None:intergenic
CAATGGAGAGGTGCTTGGCT+AGG 0.548508 1.2:+34441656 None:intergenic
TTCGACATCCGAGGAGTCAA+GGG 0.549310 1.2:+34441489 None:intergenic
TTGGAAAGTGACGTCGCTGA+AGG 0.550213 1.2:+34443970 None:intergenic
TGAGAGTGATGATACATTGT+TGG 0.550269 1.2:+34440803 None:intergenic
GATGGTGTCGCCGGAGATGG+TGG 0.551312 1.2:-34441290 MS.gene040708:CDS
TCTAAACCTTGATGAAGCAT+TGG 0.553658 1.2:-34441437 MS.gene040708:CDS
CTAGACCCAATAGGAGGAGG+AGG 0.555801 1.2:-34443851 MS.gene040708:CDS
GAGAAGATTCAGGTAGTCAA+GGG 0.555965 1.2:+34444006 None:intergenic
ACTACCCGGCTGGACCCGCC+GGG 0.556122 1.2:-34441339 MS.gene040708:CDS
GTCATTCCGGTGAACTCAGT+CGG 0.558544 1.2:-34443797 MS.gene040708:CDS
CCATCTCGGCAGCCACATGA+AGG 0.559458 1.2:+34441308 None:intergenic
ACCAGAAGATCCGCCGAATG+AGG 0.562667 1.2:-34441516 MS.gene040708:CDS
CCTCCTTGAACTCGGTGCTG+CGG 0.564936 1.2:-34441368 MS.gene040708:CDS
GTGAAAGCCCTCCTTGAACT+CGG 0.565470 1.2:-34441376 MS.gene040708:CDS
GATCATAGCAGCAGTAGCAG+TGG 0.565707 1.2:-34440992 MS.gene040708:CDS
CAAGGGCCCGCCTCATTCGG+CGG 0.566384 1.2:+34441506 None:intergenic
ACAGAAACTGCAACAGGAGG+AGG 0.567674 1.2:+34443762 None:intergenic
ACAGCTTGCATTGCTCACTC+AGG 0.569799 1.2:-34443597 MS.gene040708:intron
TAAGGAGCGGCGTGCTAAGG+AGG 0.570125 1.2:+34441597 None:intergenic
CGCAGCACCGAGTTCAAGGA+GGG 0.571055 1.2:+34441369 None:intergenic
CTGTTGCAGTTTCTGTACAG+TGG 0.573942 1.2:-34443755 MS.gene040708:CDS
ACCAATTCTCTGTAGCAGAC+AGG 0.575337 1.2:+34444561 None:intergenic
AGAAGATCCGCCGAATGAGG+CGG 0.577712 1.2:-34441513 MS.gene040708:CDS
CTAGTCAAACTCATGGTCAT+GGG 0.581311 1.2:-34441466 MS.gene040708:CDS
CATCTCCGGCGACACCATCT+CGG 0.582255 1.2:+34441294 None:intergenic
CGGGAAAACTTCCCTTCATG+TGG 0.583747 1.2:-34441320 MS.gene040708:CDS
GGTCTAGGCTCATGTTTCTG+AGG 0.584293 1.2:+34443716 None:intergenic
ATTGGGTCTAGTCCCGAAGG+TGG 0.584493 1.2:+34443863 None:intergenic
GACCTAATTGTGGTGAGAGA+GGG 0.584783 1.2:-34443697 MS.gene040708:CDS
AGATTAGTGTACCTCAACCT+TGG 0.585256 1.2:-34440917 MS.gene040708:CDS
GGTGATGATGATGGTGATGG+TGG 0.585530 1.2:+34441560 None:intergenic
ACCATCAACGGTTCTAACTG+TGG 0.586558 1.2:+34441240 None:intergenic
GTAATGCCAATGCTTCATCA+AGG 0.588210 1.2:+34441431 None:intergenic
AAGGGCAAGATCAACGGCTG+AGG 0.588511 1.2:+34443655 None:intergenic
AGACCTAATTGTGGTGAGAG+AGG 0.589965 1.2:-34443698 MS.gene040708:CDS
CAAAGGTGTCACACCATCAA+CGG 0.591793 1.2:+34441228 None:intergenic
TGAGAATTGTAGCCGAGAAG+TGG 0.593437 1.2:-34441398 MS.gene040708:CDS
CCTATTGGGTCTAGTCCCGA+AGG 0.597805 1.2:+34443860 None:intergenic
GCAGAAGCAACTAGTGAGCA+TGG 0.601200 1.2:-34441800 MS.gene040708:intron
TACCTGAATCTTCTCATCAA+CGG 0.601316 1.2:-34443998 MS.gene040708:CDS
CCATCAACGGTTCTAACTGT+GGG 0.604614 1.2:+34441241 None:intergenic
CGTGGTGATGATGATGGTGA+TGG 0.605066 1.2:+34441557 None:intergenic
GGCTGCCGAGATGGTGTCGC+CGG 0.605215 1.2:-34441299 MS.gene040708:CDS
TATGATCTTCACTCATTGGA+GGG 0.606499 1.2:+34441008 None:intergenic
ACCAGACTTGGCAACAAGGT+GGG 0.607953 1.2:+34441693 None:intergenic
CAAAGTCGTGGTGATGATGA+TGG 0.608219 1.2:+34441551 None:intergenic
GGACTAGACCCAATAGGAGG+AGG 0.611118 1.2:-34443854 MS.gene040708:CDS
GAGTTCACCGGAATGACACC+AGG 0.611897 1.2:+34443803 None:intergenic
GGTATCAAGGGCAAGATCAA+CGG 0.613359 1.2:+34443649 None:intergenic
ATCGCTGCATCTTAGCAGCA+AGG 0.614656 1.2:-34443922 MS.gene040708:CDS
TTTGACTAGTTCGACATCCG+AGG 0.618914 1.2:+34441480 None:intergenic
ACCTTTGAAGAGAAAATCAG+AGG 0.620921 1.2:+34441186 None:intergenic
CTTGGTGCTACTCAAATGGA+TGG 0.623070 1.2:-34440899 MS.gene040708:CDS
AGCGGCAGCTAGGGTATCAA+GGG 0.623566 1.2:+34443637 None:intergenic
GAAGCCATGAATCGTCGTCA+AGG 0.625063 1.2:-34440842 MS.gene040708:CDS
TTCTAACTGTGGGATCTGCA+TGG 0.627211 1.2:+34441251 None:intergenic
TCGTAGCCGACTGAGTTCAC+CGG 0.627960 1.2:+34443791 None:intergenic
GAACATGTTGTCCAAAGTTG+GGG 0.630070 1.2:+34441715 None:intergenic
TGGCGACAACGTCAATGGAG+AGG 0.634502 1.2:+34441644 None:intergenic
TGTCGAACTAGTCAAACTCA+TGG 0.636426 1.2:-34441473 MS.gene040708:CDS
TTGGGTCTAGTCCCGAAGGT+GGG 0.636525 1.2:+34443864 None:intergenic
GGTGGAGTGGCATTAAGGAG+CGG 0.636797 1.2:+34441584 None:intergenic
GGAGACCAGACTTGGCAACA+AGG 0.637078 1.2:+34441689 None:intergenic
TCGTACTGTCGGCTGACGAG+AGG 0.637585 1.2:+34443826 None:intergenic
ATTGTGGTGAGAGAGGGTGC+TGG 0.639310 1.2:-34443691 MS.gene040708:CDS
TTAACTTGTTTGGTTCAATG+TGG 0.642616 1.2:+34441146 None:intergenic
CATCTCGGCAGCCACATGAA+GGG 0.642619 1.2:+34441309 None:intergenic
ATGACACCAGGTCGTACTGT+CGG 0.652727 1.2:+34443815 None:intergenic
CATGAGCCTAGACCTAATTG+TGG 0.655015 1.2:-34443707 MS.gene040708:CDS
CGTCAGCCGACAGTACGACC+TGG 0.655540 1.2:-34443821 MS.gene040708:CDS
CCGCAGCACCGAGTTCAAGG+AGG 0.656382 1.2:+34441368 None:intergenic
CTTCGAAGTCACCAAAGTCG+TGG 0.659191 1.2:+34441539 None:intergenic
GACCAGACTTGGCAACAAGG+TGG 0.659215 1.2:+34441692 None:intergenic
TCGGGACTAGACCCAATAGG+AGG 0.661393 1.2:-34443857 MS.gene040708:CDS
TGCTGCGGATGTTAACTACC+CGG 0.669914 1.2:-34441353 MS.gene040708:CDS
AGGGTTCTAAGTATATCCAA+AGG 0.671624 1.2:+34441211 None:intergenic
TTCAACGCCAAAGTATCTAG+CGG 0.678772 1.2:+34443619 None:intergenic
TGTACAGAAACTGCAACAGG+AGG 0.681852 1.2:+34443759 None:intergenic
GCTTGGCTAGGATTTCAGGT+GGG 0.683050 1.2:+34441668 None:intergenic
CATCCATTTGAGTAGCACCA+AGG 0.686782 1.2:+34440900 None:intergenic
GCCATGAATCGTCGTCAAGG+TGG 0.689108 1.2:-34440839 MS.gene040708:CDS
GGTGAACTCAGTCGGCTACG+AGG 0.709456 1.2:-34443789 MS.gene040708:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAACTAAAATATGTAAA+AGG + chr1.2:34442407-34442426 None:intergenic 10.0%
!! AGAAAAATTGTATTGAAAAA+TGG + chr1.2:34443087-34443106 None:intergenic 15.0%
!! AGTTATTATCATATAGTATT+AGG - chr1.2:34441201-34441220 MS.gene040708:CDS 15.0%
!! GTTATTATCATATAGTATTA+GGG - chr1.2:34441202-34441221 MS.gene040708:CDS 15.0%
!!! AAAAACTAAAAAAGTGTTTT+TGG - chr1.2:34442517-34442536 MS.gene040708:intron 15.0%
!!! AAAACTAAAAAAGTGTTTTT+GGG - chr1.2:34442518-34442537 MS.gene040708:intron 15.0%
!!! AAAATAAACTGTGAAATTTT+TGG + chr1.2:34440844-34440863 None:intergenic 15.0%
!!! AAATAAACTGTGAAATTTTT+GGG + chr1.2:34440843-34440862 None:intergenic 15.0%
!!! ATAAAGATTTTATGTTGTAA+GGG + chr1.2:34443419-34443438 None:intergenic 15.0%
!!! TATAAAGATTTTATGTTGTA+AGG + chr1.2:34443420-34443439 None:intergenic 15.0%
!!! TTTGAATTTTTTTAGTTTTG+AGG + chr1.2:34442433-34442452 None:intergenic 15.0%
!!! TTTTAGTCAACTTTTTTTTT+GGG - chr1.2:34442015-34442034 MS.gene040708:intron 15.0%
!!! TTTTTAGTCAACTTTTTTTT+TGG - chr1.2:34442014-34442033 MS.gene040708:intron 15.0%
!! AAATGCAAAAATGAAATAGA+AGG + chr1.2:34442871-34442890 None:intergenic 20.0%
!! AATAATAACAACAACAACAT+TGG - chr1.2:34444402-34444421 MS.gene040708:intron 20.0%
!! AATGCAAAAATGAAATAGAA+GGG + chr1.2:34442870-34442889 None:intergenic 20.0%
!! CATGAATTAAACTTAACATT+TGG - chr1.2:34443239-34443258 MS.gene040708:intron 20.0%
!! CTATAAAAGATTACTTCAAT+TGG - chr1.2:34443451-34443470 MS.gene040708:intron 20.0%
!! TAAAATATGGCAAATGTTAA+GGG + chr1.2:34443327-34443346 None:intergenic 20.0%
!! TACGTATTAGACTTATAATT+TGG - chr1.2:34442560-34442579 MS.gene040708:intron 20.0%
!! TATAGAACTACCTAAAATAA+GGG + chr1.2:34442049-34442068 None:intergenic 20.0%
!! TTAAAATATGGCAAATGTTA+AGG + chr1.2:34443328-34443347 None:intergenic 20.0%
!! TTATAGAACTACCTAAAATA+AGG + chr1.2:34442050-34442069 None:intergenic 20.0%
!!! ATAAAGTGATTTGATGATTT+GGG - chr1.2:34443184-34443203 MS.gene040708:intron 20.0%
!!! CTCTGTACAAATTTAAAATA+TGG + chr1.2:34443340-34443359 None:intergenic 20.0%
!!! TTATTTTTGAGTCTGATATA+GGG - chr1.2:34442102-34442121 MS.gene040708:intron 20.0%
!!! TTTAGTCAACTTTTTTTTTG+GGG - chr1.2:34442016-34442035 MS.gene040708:intron 20.0%
!!! TTTATTTTTGAGTCTGATAT+AGG - chr1.2:34442101-34442120 MS.gene040708:intron 20.0%
! AAACATTCAAAACAGATCAT+AGG - chr1.2:34442314-34442333 MS.gene040708:intron 25.0%
! AACATTCAAAACAGATCATA+GGG - chr1.2:34442315-34442334 MS.gene040708:intron 25.0%
! ATAGAACTACCTAAAATAAG+GGG + chr1.2:34442048-34442067 None:intergenic 25.0%
! ATAGTAAGAGTAATGATATG+AGG + chr1.2:34442168-34442187 None:intergenic 25.0%
! CAAAAGAGAACAAACTAAAT+CGG - chr1.2:34442767-34442786 MS.gene040708:intron 25.0%
! GTTAAGTTTAATTCATGACT+TGG + chr1.2:34443236-34443255 None:intergenic 25.0%
! GTTGAGGTTATAAAACAAAT+TGG - chr1.2:34442253-34442272 MS.gene040708:intron 25.0%
! TACAATCTATTGAACAGTTT+AGG + chr1.2:34441233-34441252 None:intergenic 25.0%
! TAGTAAGAGTAATGATATGA+GGG + chr1.2:34442167-34442186 None:intergenic 25.0%
! TATGATAATAACTCCTCAAA+AGG + chr1.2:34441194-34441213 None:intergenic 25.0%
!! AAGAAAAGTGTATTTAAGGA+AGG - chr1.2:34443376-34443395 MS.gene040708:intron 25.0%
!! CATAAAGTGATTTGATGATT+TGG - chr1.2:34443183-34443202 MS.gene040708:intron 25.0%
!! CCATAAGAAAAGTGTATTTA+AGG - chr1.2:34443372-34443391 MS.gene040708:intron 25.0%
!! CCTTAAATACACTTTTCTTA+TGG + chr1.2:34443375-34443394 None:intergenic 25.0%
!! GAAATTGTGAATTTTCTTTG+AGG + chr1.2:34442953-34442972 None:intergenic 25.0%
!! TAAAGTGATTTGATGATTTG+GGG - chr1.2:34443185-34443204 MS.gene040708:intron 25.0%
!!! ACTGTGATTGTTGTTTTTAT+GGG + chr1.2:34441049-34441068 None:intergenic 25.0%
!!! TACTGTGATTGTTGTTTTTA+TGG + chr1.2:34441050-34441069 None:intergenic 25.0%
AAACAAGTTAAGGTTGTGTT+TGG - chr1.2:34444227-34444246 MS.gene040708:intron 30.0%
AATGATATGAGGGAATTTCT+TGG + chr1.2:34442157-34442176 None:intergenic 30.0%
ACATTCAAAACAGATCATAG+GGG - chr1.2:34442316-34442335 MS.gene040708:intron 30.0%
ACATTGAACCAAACAAGTTA+AGG - chr1.2:34444217-34444236 MS.gene040708:intron 30.0%
ATCTATTGAACAGTTTAGGT+TGG + chr1.2:34441229-34441248 None:intergenic 30.0%
ATGTATAGAGTTTCTCGAAT+TGG - chr1.2:34442617-34442636 MS.gene040708:intron 30.0%
CTAATCTTGAATCCAAATTC+AGG + chr1.2:34444431-34444450 None:intergenic 30.0%
TGGAAAAAAGTGAGATTTGT+TGG + chr1.2:34442898-34442917 None:intergenic 30.0%
TGGTACATGAAATCAATGAA+GGG + chr1.2:34442596-34442615 None:intergenic 30.0%
TTTATGGGAGAATCTATTAG+AGG + chr1.2:34441034-34441053 None:intergenic 30.0%
! AAATGTTAAAGAGTACGCTT+AGG + chr1.2:34443134-34443153 None:intergenic 30.0%
! AATGTTAAAGAGTACGCTTA+GGG + chr1.2:34443133-34443152 None:intergenic 30.0%
! TCTTCAGGAAATTCTTTTGT+GGG - chr1.2:34441469-34441488 MS.gene040708:CDS 30.0%
! TTCTTCAGGAAATTCTTTTG+TGG - chr1.2:34441468-34441487 MS.gene040708:CDS 30.0%
!! AAACACAACCTTAACTTGTT+TGG + chr1.2:34444228-34444247 None:intergenic 30.0%
!! AATTGGTTTGTAGACAATAC+AGG - chr1.2:34440816-34440835 MS.gene040708:CDS 30.0%
!! GAATTTTCTTTGAGGACTTT+TGG + chr1.2:34442945-34442964 None:intergenic 30.0%
!! TGGCAAATTTTGATAACACT+GGG + chr1.2:34442925-34442944 None:intergenic 30.0%
!! TTAACTTGTTTGGTTCAATG+TGG + chr1.2:34444218-34444237 None:intergenic 30.0%
!! TTGGCAAATTTTGATAACAC+TGG + chr1.2:34442926-34442945 None:intergenic 30.0%
!! TTTTGATAACACTGGGTTTA+TGG + chr1.2:34442918-34442937 None:intergenic 30.0%
!!! AAAAAAGTGTTTTTGGGAAG+TGG - chr1.2:34442524-34442543 MS.gene040708:intron 30.0%
!!! CGATTTAGTTTGTTCTCTTT+TGG + chr1.2:34442769-34442788 None:intergenic 30.0%
!!! TTTAGTTTGTTCTCTTTTGG+AGG + chr1.2:34442766-34442785 None:intergenic 30.0%
AACAAGTTCTCACTCTTACT+TGG - chr1.2:34442217-34442236 MS.gene040708:intron 35.0%
AAGGGAGAGAAAAAATGTTG+AGG + chr1.2:34442852-34442871 None:intergenic 35.0%
ACAAGTTCTCACTCTTACTT+GGG - chr1.2:34442218-34442237 MS.gene040708:intron 35.0%
AGATCTTAGAGTCTCTTCAA+GGG + chr1.2:34441331-34441350 None:intergenic 35.0%
AGATGATCACTTTCCTCATT+TGG - chr1.2:34442734-34442753 MS.gene040708:intron 35.0%
AGGATAACTATTGTGAGAAG+AGG + chr1.2:34442387-34442406 None:intergenic 35.0%
AGGGAGAGAAAAAATGTTGA+GGG + chr1.2:34442851-34442870 None:intergenic 35.0%
ATAAGAGATGAGTGAGTGAT+TGG + chr1.2:34441145-34441164 None:intergenic 35.0%
ATGAAATAGTGAAGAGAGGT+TGG + chr1.2:34441121-34441140 None:intergenic 35.0%
GAAGAGAAAATCAGAGGTTA+GGG + chr1.2:34444172-34444191 None:intergenic 35.0%
GAGAGTGATGATACATTGTT+GGG + chr1.2:34444560-34444579 None:intergenic 35.0%
GTGGTACATGAAATCAATGA+AGG + chr1.2:34442597-34442616 None:intergenic 35.0%
TACCTGAATCTTCTCATCAA+CGG - chr1.2:34441363-34441382 MS.gene040708:CDS 35.0%
TATGATCTTCACTCATTGGA+GGG + chr1.2:34444356-34444375 None:intergenic 35.0%
TCAAACACAGTAACAGAAAC+AGG - chr1.2:34441282-34441301 MS.gene040708:CDS 35.0%
TCTAAACCTTGATGAAGCAT+TGG - chr1.2:34443924-34443943 MS.gene040708:CDS 35.0%
TCTAGAGAGAGAAAGATTGT+GGG + chr1.2:34440920-34440939 None:intergenic 35.0%
TGAAATAGTGAAGAGAGGTT+GGG + chr1.2:34441120-34441139 None:intergenic 35.0%
TGAAGAGAAAATCAGAGGTT+AGG + chr1.2:34444173-34444192 None:intergenic 35.0%
TGAGAGTGATGATACATTGT+TGG + chr1.2:34444561-34444580 None:intergenic 35.0%
TGAGGAAAGTGATCATCTTT+AGG + chr1.2:34442732-34442751 None:intergenic 35.0%
TGGAATGAAATAGTGAAGAG+AGG + chr1.2:34441125-34441144 None:intergenic 35.0%
TTCGAGAAACTCTATACATG+TGG + chr1.2:34442616-34442635 None:intergenic 35.0%
TTGAGTCTGATATAGGGATT+TGG - chr1.2:34442108-34442127 MS.gene040708:intron 35.0%
TTTCATCACATCGTCTATTG+AGG + chr1.2:34443596-34443615 None:intergenic 35.0%
! ACCTCTGATTTTCTCTTCAA+AGG - chr1.2:34444174-34444193 MS.gene040708:intron 35.0%
! ACCTTTGAAGAGAAAATCAG+AGG + chr1.2:34444178-34444197 None:intergenic 35.0%
! CAACATTGGTAACCTGAATT+TGG - chr1.2:34444416-34444435 MS.gene040708:intron 35.0%
! GATTTTGTGTGCTTCATTTG+CGG + chr1.2:34442706-34442725 None:intergenic 35.0%
! TCTCTTTTTCTCACCTTTTG+AGG - chr1.2:34441178-34441197 MS.gene040708:CDS 35.0%
! TTCTAGAGAGAGAAAGATTG+TGG + chr1.2:34440921-34440940 None:intergenic 35.0%
!! AGGGTTCTAAGTATATCCAA+AGG + chr1.2:34444153-34444172 None:intergenic 35.0%
!! GGGTCTGTTTGAAATAGTTT+TGG - chr1.2:34442336-34442355 MS.gene040708:intron 35.0%
!! TCACTTTCCTCATTTGGTTT+TGG - chr1.2:34442740-34442759 MS.gene040708:intron 35.0%
!!! ATGGTTTTTGGAATGTGGAA+AGG - chr1.2:34441954-34441973 MS.gene040708:intron 35.0%
!!! TGGTTTTTGGAATGTGGAAA+GGG - chr1.2:34441955-34441974 MS.gene040708:intron 35.0%
AAGGTGAGAAAAAGAGAGAG+AGG + chr1.2:34441175-34441194 None:intergenic 40.0%
ACTAGTCAAACTCATGGTCA+TGG - chr1.2:34443894-34443913 MS.gene040708:CDS 40.0%
AGATTAGTGTACCTCAACCT+TGG - chr1.2:34444444-34444463 MS.gene040708:intron 40.0%
CTAGTCAAACTCATGGTCAT+GGG - chr1.2:34443895-34443914 MS.gene040708:CDS 40.0%
CTATGATCTTCACTCATTGG+AGG + chr1.2:34444357-34444376 None:intergenic 40.0%
CTGCTATGATCTTCACTCAT+TGG + chr1.2:34444360-34444379 None:intergenic 40.0%
CTTGCCAGAAAACATATGAC+TGG + chr1.2:34441916-34441935 None:intergenic 40.0%
GAACATGTTGTCCAAAGTTG+GGG + chr1.2:34443649-34443668 None:intergenic 40.0%
GAGAAGATTCAGGTAGTCAA+GGG + chr1.2:34441358-34441377 None:intergenic 40.0%
GAGATCTTAGAGTCTCTTCA+AGG + chr1.2:34441332-34441351 None:intergenic 40.0%
GGAACATGTTGTCCAAAGTT+GGG + chr1.2:34443650-34443669 None:intergenic 40.0%
GGGAGAGAAAAAATGTTGAG+GGG + chr1.2:34442850-34442869 None:intergenic 40.0%
GGTTCAATGTGGTTTAATCC+AGG + chr1.2:34444207-34444226 None:intergenic 40.0%
GTAATGCCAATGCTTCATCA+AGG + chr1.2:34443933-34443952 None:intergenic 40.0%
TCACTCATTGGAGGGTAAAT+TGG + chr1.2:34444348-34444367 None:intergenic 40.0%
TCATTTGCGGAAGACAAGAT+TGG + chr1.2:34442693-34442712 None:intergenic 40.0%
TGAGAAGATTCAGGTAGTCA+AGG + chr1.2:34441359-34441378 None:intergenic 40.0%
TGGCTGTGGTTATTGTATGT+AGG + chr1.2:34440981-34441000 None:intergenic 40.0%
TGTCGAACTAGTCAAACTCA+TGG - chr1.2:34443888-34443907 MS.gene040708:CDS 40.0%
! AGTGATTTGATGATTTGGGG+AGG - chr1.2:34443188-34443207 MS.gene040708:intron 40.0%
! ATGATTTGGGGAGGAACATA+GGG - chr1.2:34443197-34443216 MS.gene040708:intron 40.0%
! CTAAGGAGGATTTTAGACGA+AGG + chr1.2:34443753-34443772 None:intergenic 40.0%
! GTGACCAGTCATATGTTTTC+TGG - chr1.2:34441909-34441928 MS.gene040708:intron 40.0%
! TAGACGAAGGTCTTCGATTT+TGG + chr1.2:34443740-34443759 None:intergenic 40.0%
! TTCAACGCCAAAGTATCTAG+CGG + chr1.2:34441745-34441764 None:intergenic 40.0%
! TTCATTTGGCTGGCTATTCT+GGG + chr1.2:34440888-34440907 None:intergenic 40.0%
! TTTCCAAGTTGAAGGTCGTT+TGG - chr1.2:34441407-34441426 MS.gene040708:CDS 40.0%
!! AAGGGAAAGGGTATGGTTTT+TGG - chr1.2:34441942-34441961 MS.gene040708:intron 40.0%
!! GTCATATGTTTTCTGGCAAG+CGG - chr1.2:34441916-34441935 MS.gene040708:intron 40.0%
!!! AGGGTATGGTTTTTGGAATG+TGG - chr1.2:34441949-34441968 MS.gene040708:intron 40.0%
!!! GGGTTTGTTCCCCTTATTTT+AGG - chr1.2:34442036-34442055 MS.gene040708:intron 40.0%
!!! GGTTTTTGGAATGTGGAAAG+GGG - chr1.2:34441956-34441975 MS.gene040708:intron 40.0%
AAACTCATGGTCATGGGAGA+AGG - chr1.2:34443901-34443920 MS.gene040708:CDS 45.0%
ACCAATTCTCTGTAGCAGAC+AGG + chr1.2:34440803-34440822 None:intergenic 45.0%
ACTATGTGTGAATGGAGGAG+AGG + chr1.2:34441007-34441026 None:intergenic 45.0%
AGACCTAATTGTGGTGAGAG+AGG - chr1.2:34441663-34441682 MS.gene040708:CDS 45.0%
AGCAAGAAATGCCCCAACTT+TGG - chr1.2:34443635-34443654 MS.gene040708:CDS 45.0%
CACTGTACAGAAACTGCAAC+AGG + chr1.2:34441608-34441627 None:intergenic 45.0%
CATCATCATCACCACGACTT+TGG - chr1.2:34443811-34443830 MS.gene040708:CDS 45.0%
CATCCATTTGAGTAGCACCA+AGG + chr1.2:34444464-34444483 None:intergenic 45.0%
CATGAGCCTAGACCTAATTG+TGG - chr1.2:34441654-34441673 MS.gene040708:CDS 45.0%
CTATGTGTGAATGGAGGAGA+GGG + chr1.2:34441006-34441025 None:intergenic 45.0%
CTCTCACCACAATTAGGTCT+AGG + chr1.2:34441663-34441682 None:intergenic 45.0%
CTGTTGCAGTTTCTGTACAG+TGG - chr1.2:34441606-34441625 MS.gene040708:CDS 45.0%
GAACCAAACGACCTTCAACT+TGG + chr1.2:34441413-34441432 None:intergenic 45.0%
GACCTAATTGTGGTGAGAGA+GGG - chr1.2:34441664-34441683 MS.gene040708:CDS 45.0%
GAGGGAATTTCTTGGAAGAG+AGG + chr1.2:34442149-34442168 None:intergenic 45.0%
GAGGTGTGACTATGTGTGAA+TGG + chr1.2:34441015-34441034 None:intergenic 45.0%
GAGTGAATGCTTCATTTGGC+TGG + chr1.2:34440898-34440917 None:intergenic 45.0%
GGGAACATGTTGTCCAAAGT+TGG + chr1.2:34443651-34443670 None:intergenic 45.0%
GGTATCAAGGGCAAGATCAA+CGG + chr1.2:34441715-34441734 None:intergenic 45.0%
GTGGGAGTGAATGCTTCATT+TGG + chr1.2:34440902-34440921 None:intergenic 45.0%
GTGTGACTATGTGTGAATGG+AGG + chr1.2:34441012-34441031 None:intergenic 45.0%
TGAGAATTGTAGCCGAGAAG+TGG - chr1.2:34443963-34443982 MS.gene040708:CDS 45.0%
TGTACAGAAACTGCAACAGG+AGG + chr1.2:34441605-34441624 None:intergenic 45.0%
TTCTAACTGTGGGATCTGCA+TGG + chr1.2:34444113-34444132 None:intergenic 45.0%
TTGGAGGCCAAAACCAAATG+AGG + chr1.2:34442750-34442769 None:intergenic 45.0%
TTTGAGTAGCACCAAGGTTG+AGG + chr1.2:34444458-34444477 None:intergenic 45.0%
! AAAGTATCTAGCGGCAGCTA+GGG + chr1.2:34441736-34441755 None:intergenic 45.0%
! ACCATCAACGGTTCTAACTG+TGG + chr1.2:34444124-34444143 None:intergenic 45.0%
! CAAAGTCGTGGTGATGATGA+TGG + chr1.2:34443813-34443832 None:intergenic 45.0%
! CACATGAAGGGAAGTTTTCC+CGG + chr1.2:34444043-34444062 None:intergenic 45.0%
! CAGCAAGGAGTCTTTTCTTC+AGG - chr1.2:34441454-34441473 MS.gene040708:CDS 45.0%
! CAGGAAATTCTTTTGTGGGC+CGG - chr1.2:34441473-34441492 MS.gene040708:CDS 45.0%
! CCATCAACGGTTCTAACTGT+GGG + chr1.2:34444123-34444142 None:intergenic 45.0%
! CTTCATTTGGCTGGCTATTC+TGG + chr1.2:34440889-34440908 None:intergenic 45.0%
! GACGTCACTTTCCAAGTTGA+AGG - chr1.2:34441399-34441418 MS.gene040708:CDS 45.0%
! GATGATTTGGGGAGGAACAT+AGG - chr1.2:34443196-34443215 MS.gene040708:intron 45.0%
! TGGGATTGAGACTTGAGTTG+AGG - chr1.2:34442237-34442256 MS.gene040708:intron 45.0%
! TTTGACTAGTTCGACATCCG+AGG + chr1.2:34443884-34443903 None:intergenic 45.0%
!! ATATGTTTTCTGGCAAGCGG+AGG - chr1.2:34441919-34441938 MS.gene040708:intron 45.0%
!! CAAAGGTGTCACACCATCAA+CGG + chr1.2:34444136-34444155 None:intergenic 45.0%
!! CAACCTTGGTGCTACTCAAA+TGG - chr1.2:34444458-34444477 MS.gene040708:intron 45.0%
!! CTTGGTGCTACTCAAATGGA+TGG - chr1.2:34444462-34444481 MS.gene040708:intron 45.0%
!! GATTTTGGCGACAACGTCAA+TGG + chr1.2:34443725-34443744 None:intergenic 45.0%
!! ATTAACAAATAATTTAATAT+TGG + chr1.2:34443509-34443528 None:intergenic 5.0%
!! TTAAATAAAATGAAAATATT+AGG - chr1.2:34443157-34443176 MS.gene040708:intron 5.0%
!!! TAATATTTTCATTTTATTTA+AGG + chr1.2:34443158-34443177 None:intergenic 5.0%
AATCGTCGTCAAGGTGGTCA+TGG - chr1.2:34444528-34444547 MS.gene040708:intron 50.0%
ACAGAAACTGCAACAGGAGG+AGG + chr1.2:34441602-34441621 None:intergenic 50.0%
ACAGCTTGCATTGCTCACTC+AGG - chr1.2:34441764-34441783 MS.gene040708:CDS 50.0%
ACCACCTTGACGACGATTCA+TGG + chr1.2:34444526-34444545 None:intergenic 50.0%
ACCAGACTTGGCAACAAGGT+GGG + chr1.2:34443671-34443690 None:intergenic 50.0%
AGCAAAACTGCCACCATCTC+CGG + chr1.2:34444084-34444103 None:intergenic 50.0%
AGGATCCTCCTCCTCCTATT+GGG + chr1.2:34441518-34441537 None:intergenic 50.0%
AGGTGCTTGGCTAGGATTTC+AGG + chr1.2:34443700-34443719 None:intergenic 50.0%
ATCGCTGCATCTTAGCAGCA+AGG - chr1.2:34441439-34441458 MS.gene040708:CDS 50.0%
ATGACACCAGGTCGTACTGT+CGG + chr1.2:34441549-34441568 None:intergenic 50.0%
CACCCTCTCTCACCACAATT+AGG + chr1.2:34441669-34441688 None:intergenic 50.0%
CCCACAGTTAGAACCGTTGA+TGG - chr1.2:34444120-34444139 MS.gene040708:intron 50.0%
CGGGAAAACTTCCCTTCATG+TGG - chr1.2:34444041-34444060 MS.gene040708:intron 50.0%
CTAGCTGCCGCTAGATACTT+TGG - chr1.2:34441735-34441754 MS.gene040708:CDS 50.0%
CTTCGAAGTCACCAAAGTCG+TGG + chr1.2:34443825-34443844 None:intergenic 50.0%
GAAGCCATGAATCGTCGTCA+AGG - chr1.2:34444519-34444538 MS.gene040708:intron 50.0%
GATCATAGCAGCAGTAGCAG+TGG - chr1.2:34444369-34444388 MS.gene040708:intron 50.0%
GCAGAAGCAACTAGTGAGCA+TGG - chr1.2:34443561-34443580 MS.gene040708:intron 50.0%
GCCTGTCTGCTACAGAGAAT+TGG - chr1.2:34440799-34440818 MS.gene040708:CDS 50.0%
GTCATTCCGGTGAACTCAGT+CGG - chr1.2:34441564-34441583 MS.gene040708:CDS 50.0%
GTGAAAGCCCTCCTTGAACT+CGG - chr1.2:34443985-34444004 MS.gene040708:CDS 50.0%
TGCTGCGGATGTTAACTACC+CGG - chr1.2:34444008-34444027 MS.gene040708:CDS 50.0%
TGCTTGGCTAGGATTTCAGG+TGG + chr1.2:34443697-34443716 None:intergenic 50.0%
TTCGACATCCGAGGAGTCAA+GGG + chr1.2:34443875-34443894 None:intergenic 50.0%
TTGGAAAGTGACGTCGCTGA+AGG + chr1.2:34441394-34441413 None:intergenic 50.0%
! ATGAAGGGAAGTTTTCCCGG+CGG + chr1.2:34444040-34444059 None:intergenic 50.0%
! ATTTGGCTGGCTATTCTGGG+CGG + chr1.2:34440885-34440904 None:intergenic 50.0%
! CAAAGTATCTAGCGGCAGCT+AGG + chr1.2:34441737-34441756 None:intergenic 50.0%
! GCTTGGCTAGGATTTCAGGT+GGG + chr1.2:34443696-34443715 None:intergenic 50.0%
! GGCCGTTGATGAGAAGATTC+AGG + chr1.2:34441368-34441387 None:intergenic 50.0%
! GGTCTAGGCTCATGTTTCTG+AGG + chr1.2:34441648-34441667 None:intergenic 50.0%
!! AACGTCAATGGAGAGGTGCT+TGG + chr1.2:34443713-34443732 None:intergenic 50.0%
!! AGTACGACCTGGTGTCATTC+CGG - chr1.2:34441551-34441570 MS.gene040708:CDS 50.0%
!! CGTGGTGATGATGATGGTGA+TGG + chr1.2:34443807-34443826 None:intergenic 50.0%
!! CGTTGATGGTGTGACACCTT+TGG - chr1.2:34444134-34444153 MS.gene040708:intron 50.0%
!! CTCTTCAAAGGTGCTGTTCC+TGG - chr1.2:34444186-34444205 MS.gene040708:intron 50.0%
!! GATGATGATGGTGATGGTGG+TGG + chr1.2:34443801-34443820 None:intergenic 50.0%
!! GGTGATGATGATGGTGATGG+TGG + chr1.2:34443804-34443823 None:intergenic 50.0%
!! TTTTCTGGCAAGCGGAGGAA+GGG - chr1.2:34441924-34441943 MS.gene040708:intron 50.0%
AAGGGCAAGATCAACGGCTG+AGG + chr1.2:34441709-34441728 None:intergenic 55.0%
AAGTGACGTCGCTGAAGGCT+TGG + chr1.2:34441389-34441408 None:intergenic 55.0%
ACCAGAAGATCCGCCGAATG+AGG - chr1.2:34443845-34443864 MS.gene040708:CDS 55.0%
AGAAGATCCGCCGAATGAGG+CGG - chr1.2:34443848-34443867 MS.gene040708:CDS 55.0%
ATTGGGTCTAGTCCCGAAGG+TGG + chr1.2:34441501-34441520 None:intergenic 55.0%
CATCTCGGCAGCCACATGAA+GGG + chr1.2:34444055-34444074 None:intergenic 55.0%
CATTAAGGAGCGGCGTGCTA+AGG + chr1.2:34443770-34443789 None:intergenic 55.0%
CCTATTGGGTCTAGTCCCGA+AGG + chr1.2:34441504-34441523 None:intergenic 55.0%
CCTTCGGGACTAGACCCAAT+AGG - chr1.2:34441501-34441520 MS.gene040708:CDS 55.0%
CTAGACCCAATAGGAGGAGG+AGG - chr1.2:34441510-34441529 MS.gene040708:CDS 55.0%
GACCAGACTTGGCAACAAGG+TGG + chr1.2:34443672-34443691 None:intergenic 55.0%
GAGGATCCTCCTCCTCCTAT+TGG + chr1.2:34441519-34441538 None:intergenic 55.0%
GAGTTCACCGGAATGACACC+AGG + chr1.2:34441561-34441580 None:intergenic 55.0%
GCCATGAATCGTCGTCAAGG+TGG - chr1.2:34444522-34444541 MS.gene040708:intron 55.0%
GGACTAGACCCAATAGGAGG+AGG - chr1.2:34441507-34441526 MS.gene040708:CDS 55.0%
GGAGACCAGACTTGGCAACA+AGG + chr1.2:34443675-34443694 None:intergenic 55.0%
GGAGGGCTTTCACCACTTCT+CGG + chr1.2:34443978-34443997 None:intergenic 55.0%
GGTGGAGTGGCATTAAGGAG+CGG + chr1.2:34443780-34443799 None:intergenic 55.0%
GTTCGACATCCGAGGAGTCA+AGG + chr1.2:34443876-34443895 None:intergenic 55.0%
TCCCACCTTGTTGCCAAGTC+TGG - chr1.2:34443667-34443686 MS.gene040708:CDS 55.0%
TCGGGACTAGACCCAATAGG+AGG - chr1.2:34441504-34441523 MS.gene040708:CDS 55.0%
TCGTAGCCGACTGAGTTCAC+CGG + chr1.2:34441573-34441592 None:intergenic 55.0%
TGGCGACAACGTCAATGGAG+AGG + chr1.2:34443720-34443739 None:intergenic 55.0%
TGTGAATGGAGGAGAGGGTG+TGG + chr1.2:34441001-34441020 None:intergenic 55.0%
TTCAGGTGGGAGACCAGACT+TGG + chr1.2:34443683-34443702 None:intergenic 55.0%
TTGGGTCTAGTCCCGAAGGT+GGG + chr1.2:34441500-34441519 None:intergenic 55.0%
! AGCGGCAGCTAGGGTATCAA+GGG + chr1.2:34441727-34441746 None:intergenic 55.0%
! ATTGTGGTGAGAGAGGGTGC+TGG - chr1.2:34441670-34441689 MS.gene040708:CDS 55.0%
! TAGCGGCAGCTAGGGTATCA+AGG + chr1.2:34441728-34441747 None:intergenic 55.0%
! TGAAGGGAAGTTTTCCCGGC+GGG + chr1.2:34444039-34444058 None:intergenic 55.0%
!! CAATGGAGAGGTGCTTGGCT+AGG + chr1.2:34443708-34443727 None:intergenic 55.0%
!! GATGATGGTGATGGTGGTGG+TGG + chr1.2:34443798-34443817 None:intergenic 55.0%
!! GTGGTGGTGGAGTGGCATTA+AGG + chr1.2:34443785-34443804 None:intergenic 55.0%
!! GTTTTCTGGCAAGCGGAGGA+AGG - chr1.2:34441923-34441942 MS.gene040708:intron 55.0%
AGTCAAGGGCCCGCCTCATT+CGG + chr1.2:34443861-34443880 None:intergenic 60.0%
CATCTCCGGCGACACCATCT+CGG + chr1.2:34444070-34444089 None:intergenic 60.0%
CCATCTCGGCAGCCACATGA+AGG + chr1.2:34444056-34444075 None:intergenic 60.0%
CCTTCATGTGGCTGCCGAGA+TGG - chr1.2:34444053-34444072 MS.gene040708:intron 60.0%
GAAGATCCGCCGAATGAGGC+GGG - chr1.2:34443849-34443868 MS.gene040708:CDS 60.0%
GCCTCATTCGGCGGATCTTC+TGG + chr1.2:34443849-34443868 None:intergenic 60.0%
GCGGAGGAAGGGAAAGGGTA+TGG - chr1.2:34441935-34441954 MS.gene040708:intron 60.0%
GCGGATGTTAACTACCCGGC+TGG - chr1.2:34444012-34444031 MS.gene040708:CDS 60.0%
GGCAAGCGGAGGAAGGGAAA+GGG - chr1.2:34441930-34441949 MS.gene040708:intron 60.0%
GGTGAACTCAGTCGGCTACG+AGG - chr1.2:34441572-34441591 MS.gene040708:CDS 60.0%
TAAGGAGCGGCGTGCTAAGG+AGG + chr1.2:34443767-34443786 None:intergenic 60.0%
TCTAGTCCCGAAGGTGGGTC+CGG + chr1.2:34441495-34441514 None:intergenic 60.0%
TGGCAAGCGGAGGAAGGGAA+AGG - chr1.2:34441929-34441948 MS.gene040708:intron 60.0%
! CATCCGCAGCACCGAGTTCA+AGG + chr1.2:34443999-34444018 None:intergenic 60.0%
! CGCAGCACCGAGTTCAAGGA+GGG + chr1.2:34443995-34444014 None:intergenic 60.0%
! TCGTACTGTCGGCTGACGAG+AGG + chr1.2:34441538-34441557 None:intergenic 60.0%
!! CCTCCTTGAACTCGGTGCTG+CGG - chr1.2:34443993-34444012 MS.gene040708:CDS 60.0%
!! TGGTGATGGTGGTGGTGGAG+TGG + chr1.2:34443793-34443812 None:intergenic 60.0%
CGTCAGCCGACAGTACGACC+TGG - chr1.2:34441540-34441559 MS.gene040708:CDS 65.0%
TTGTGGGCCGGACCCACCTT+CGG - chr1.2:34441485-34441504 MS.gene040708:CDS 65.0%
! CCGCAGCACCGAGTTCAAGG+AGG + chr1.2:34443996-34444015 None:intergenic 65.0%
! GGCTGGCTATTCTGGGCGGT+TGG + chr1.2:34440881-34440900 None:intergenic 65.0%
! TGGAGGAGAGGGTGTGGCTG+TGG + chr1.2:34440995-34441014 None:intergenic 65.0%
!! CGAGATGGTGTCGCCGGAGA+TGG - chr1.2:34444068-34444087 MS.gene040708:intron 65.0%
!! GATGGTGTCGCCGGAGATGG+TGG - chr1.2:34444071-34444090 MS.gene040708:intron 65.0%
AACTACCCGGCTGGACCCGC+CGG - chr1.2:34444021-34444040 MS.gene040708:CDS 70.0%
CAAGGGCCCGCCTCATTCGG+CGG + chr1.2:34443858-34443877 None:intergenic 70.0%
GAGGCGGGCCCTTGACTCCT+CGG - chr1.2:34443864-34443883 MS.gene040708:CDS 70.0%
TGTGGGCCGGACCCACCTTC+GGG - chr1.2:34441486-34441505 MS.gene040708:CDS 70.0%
! GTTTTCCCGGCGGGTCCAGC+CGG + chr1.2:34444030-34444049 None:intergenic 70.0%
! TTTTCCCGGCGGGTCCAGCC+GGG + chr1.2:34444029-34444048 None:intergenic 70.0%
!! GGCTGCCGAGATGGTGTCGC+CGG - chr1.2:34444062-34444081 MS.gene040708:intron 70.0%
ACTACCCGGCTGGACCCGCC+GGG - chr1.2:34444022-34444041 MS.gene040708:CDS 75.0%


Chromosome Type Strat End Strand Name
chr1.2 gene 34440793 34444590 34440793 ID=MS.gene040708
chr1.2 mRNA 34440793 34444590 34440793 ID=MS.gene040708.t1;Parent=MS.gene040708
chr1.2 exon 34444563 34444590 34444563 ID=MS.gene040708.t1.exon1;Parent=MS.gene040708.t1
chr1.2 CDS 34444563 34444590 34444563 ID=cds.MS.gene040708.t1;Parent=MS.gene040708.t1
chr1.2 exon 34443598 34444046 34443598 ID=MS.gene040708.t1.exon2;Parent=MS.gene040708.t1
chr1.2 CDS 34443598 34444046 34443598 ID=cds.MS.gene040708.t1;Parent=MS.gene040708.t1
chr1.2 exon 34440793 34441818 34440793 ID=MS.gene040708.t1.exon3;Parent=MS.gene040708.t1
chr1.2 CDS 34440793 34441818 34440793 ID=cds.MS.gene040708.t1;Parent=MS.gene040708.t1
Gene Sequence

>MS.gene040708

ATGAGTGCCTGTCTGCTACAGAGAATTGGTTTGTAGACAATACAGGTCCCAAAAATTTCACAGTTTATTTTGTTTGTTAAAAACACCAACCGCCCAGAATAGCCAGCCAAATGAAGCATTCACTCCCACAATCTTTCTCTCTCTAGAATTTCTTTTTTCTTATCAAAACAATAAACAATAAACTTCCTACATACAATAACCACAGCCACACCCTCTCCTCCATTCACACATAGTCACACCTCTAATAGATTCTCCCATAAAAACAACAATCACAGTAGCATCATCAACATCAACGAAAACAACACAAAAATCAAACAATTAAAACCCAACCTCTCTTCACTATTTCATTCCAATCACTCACTCATCTCTTATTTTATATCCTCTCTCTCTTTTTCTCACCTTTTGAGGAGTTATTATCATATAGTATTAGGGACCAACCTAAACTGTTCAATAGATTGTACTCTTTTCTTCACTTTCTAGTTGAGTCATTCAAACACAGTAACAGAAACAGGAAGCAATAACAACAACAACATGTCCCTTGAAGAGACTCTAAGATCTCTCTCCCTTGACTACCTGAATCTTCTCATCAACGGCCAAGCCTTCAGCGACGTCACTTTCCAAGTTGAAGGTCGTTTGGTTCATGCTCATCGCTGCATCTTAGCAGCAAGGAGTCTTTTCTTCAGGAAATTCTTTTGTGGGCCGGACCCACCTTCGGGACTAGACCCAATAGGAGGAGGAGGATCCTCTCGTCAGCCGACAGTACGACCTGGTGTCATTCCGGTGAACTCAGTCGGCTACGAGGTGTTCCTCCTCCTGTTGCAGTTTCTGTACAGTGGACAAGTTTCTATTGTTCCTCAGAAACATGAGCCTAGACCTAATTGTGGTGAGAGAGGGTGCTGGCATACGCATTGTACCTCAGCCGTTGATCTTGCCCTTGATACCCTAGCTGCCGCTAGATACTTTGGCGTTGAACAGCTTGCATTGCTCACTCAGGTTTACTATTCTTAATTTAATTTTATTGTTTATTTATTTATTTTTTATTTTATTTTACTTAAAACAAAACACACAATATCTCTCTCTGTGTCTGTCTTCTGTTTCTGTGTGTCTCTGATTTGTGTGACCAGTCATATGTTTTCTGGCAAGCGGAGGAAGGGAAAGGGTATGGTTTTTGGAATGTGGAAAGGGGTATTTTCTCTTCTATTTTTTATTCTTTTCAATATTTTTTTAGTCAACTTTTTTTTTGGGGTTTGTTCCCCTTATTTTAGGTAGTTCTATAATTTTATGATGAGTGAAATTGTTTGATAAATTTTTATTTTTGAGTCTGATATAGGGATTTGGATTTTGATACGTTCTCCTCTCTTCCAAGAAATTCCCTCATATCATTACTCTTACTATTGTGTGTTTATCTTAACAATCTTTGTTTTAACAAGTTCTCACTCTTACTTGGGATTGAGACTTGAGTTGAGGTTATAAAACAAATTGGATTTTTTTTTTACAAAAAACATTTATCAAACAGTTGTCAAACATTCAAAACAGATCATAGGGGTCTGTTTGAAATAGTTTTGGTTTTCAGTTTTTGAAATATACAAGTCCTCTTCTCACAATAGTTATCCTTTTACATATTTTAGTTTTTTAGTCCTCAAAACTAAAAAAATTCAAAACAGTTTCTAAAACTGTAATTTTAAAAATTGTTTAGCAAACAAGTTTTTAATTTTCAAGTTTTTAAAAACTAAAAAAGTGTTTTTGGGAAGTGGTTCAAAGAGACTCTACGTATTAGACTTATAATTTGGTGTTTGACGTCCCTTCATTGATTTCATGTACCACATGTATAGAGTTTCTCGAATTGGTGTGTAACGATGCATAATTATTTTTCTTTCTAAATTAAGATGACATATTTCCAATCTTGTCTTCCGCAAATGAAGCACACAAAATCTTTCCTAAAGATGATCACTTTCCTCATTTGGTTTTGGCCTCCAAAAGAGAACAAACTAAATCGGAAAAAAAGCAGTGTCTGCTTCTCAAAACGCACTAAATAATTTTCAACAAACAAACTACCCCTCAACATTTTTTCTCTCCCTTCTATTTCATTTTTGCATTTTAAACCAACAAATCTCACTTTTTTCCATAAACCCAGTGTTATCAAAATTTGCCAAAAGTCCTCAAAGAAAATTCACAATTTCTCTAGTGTAAGTTAAGACTTTGTGAAAAAACTCTCTCAAATTAAAAGTAGTAAGTTGACACTGAAATGAACAATTCTTTTACTTTTTAAAAGTTGAATTCACAACTTTTCACCATTTTTCAATACAATTTTTCTATCTTTATTTTTTTTAATCAATGCCCTAAGCGTACTCTTTAACATTTTCCTTAAATAAAATGAAAATATTAGGAGTCATAAAGTGATTTGATGATTTGGGGAGGAACATAGGGATTGTAGTGATAACCAAGTCATGAATTAAACTTAACATTTGGTCATTTCAGAAACAATAATTTATTAAAGAAAATATAATTTCTCTTAAAAATCATTCATGTATCCCTTAACATTTGCCATATTTTAAATTTGTACAGAGAAAAAACATTTGCCATAAGAAAAGTGTATTTAAGGAAGGTTCACATCATACTTCAACCCTTACAACATAAAATCTTTATACTTCAAACATACTATAAAAGATTACTTCAATTGGAAAATACAAAGTTAGATTTACGACTTGATCTACCAATATTAAATTATTTGTTAATATTTCATCTAACTCTCATTGCTTGAATGATTTGCAGAAGCAACTAGTGAGCATGGTAGAGAAAGCCTCAATAGACGATGTGATGAAAGTACTAATAGCTTCAAGAAAGCAAGAAATGCCCCAACTTTGGACAACATGTTCCCACCTTGTTGCCAAGTCTGGTCTCCCACCTGAAATCCTAGCCAAGCACCTCTCCATTGACGTTGTCGCCAAAATCGAAGACCTTCGTCTAAAATCCTCCTTAGCACGCCGCTCCTTAATGCCACTCCACCACCACCATCACCATCATCATCACCACGACTTTGGTGACTTCGAAGACCAGAAGATCCGCCGAATGAGGCGGGCCCTTGACTCCTCGGATGTCGAACTAGTCAAACTCATGGTCATGGGAGAAGGTCTAAACCTTGATGAAGCATTGGCATTACACTATGCAGTTGAGAATTGTAGCCGAGAAGTGGTGAAAGCCCTCCTTGAACTCGGTGCTGCGGATGTTAACTACCCGGCTGGACCCGCCGGGAAAACTTCCCTTCATGTGGCTGCCGAGATGGTGTCGCCGGAGATGGTGGCAGTTTTGCTTGATCACCATGCAGATCCCACAGTTAGAACCGTTGATGGTGTGACACCTTTGGATATACTTAGAACCCTAACCTCTGATTTTCTCTTCAAAGGTGCTGTTCCTGGATTAAACCACATTGAACCAAACAAGTTAAGGTTGTGTTTGGAACTTGTTCAATCTGCAGCTCTTGTTCTGTCACGTGAAGAAAACAATGCTAGTAACAATAATAACAACAACAATAATGCTTCTTCATCAGCAGCACCAATTTACCCTCCAATGAGTGAAGATCATAGCAGCAGTAGCAGTGGCAACAACAACAATAATAACAACAACAACATTGGTAACCTGAATTTGGATTCAAGATTAGTGTACCTCAACCTTGGTGCTACTCAAATGGATGGTGAAGATGATAATCGACACAACAATAGTCATAGAGAAGCCATGAATCGTCGTCAAGGTGGTCATGGATGTGACCCAACAATGTATCATCACTCTCATGACTTCTAA
Protein sequence

>MS.gene040708.t1

MSACLLQRIETLRSLSLDYLNLLINGQAFSDVTFQVEGRLVHAHRCILAARSLFFRKFFCGPDPPSGLDPIGGGGSSRQPTVRPGVIPVNSVGYEVFLLLLQFLYSGQVSIVPQKHEPRPNCGERGCWHTHCTSAVDLALDTLAAARYFGVEQLALLTQKQLVSMVEKASIDDVMKVLIASRKQEMPQLWTTCSHLVAKSGLPPEILAKHLSIDVVAKIEDLRLKSSLARRSLMPLHHHHHHHHHHDFGDFEDQKIRRMRRALDSSDVELVKLMVMGEGLNLDEALALHYAVENCSREVVKALLELGAADVNYPAGPAGKTSLHVAAEMVSPEMVAVLLDHHADPTVRTVDGVTPLDILRTLTSDFLFKGAVPGLNHIEPNKLRLCLELVQSAALVLSREENNASNNNNNNNNASSSAAPIYPPMSEDHSSSSSGNNNNNNNNNIGNLNLDSRLVYLNLGATQMDGEDDNRHNNSHREAMNRRQGGHGCDPTMYHHSHDF