Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene040726.t1 | ABN05718.1 | 48.9 | 745 | 115 | 2 | 1 | 479 | 56 | 800 | 7.50E-183 | 650.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene040726.t1 | Q9SWG3 | 30.2 | 235 | 130 | 4 | 137 | 339 | 378 | 610 | 7.2e-25 | 116.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene040726.t1 | A2Q1A1 | 48.9 | 745 | 115 | 2 | 1 | 479 | 56 | 800 | 5.4e-183 | 650.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene040726.t1 | TF | FAR1 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene040726.t1 | MTR_8g465780 | 60.150 | 133 | 53 | 0 | 182 | 314 | 1 | 133 | 3.60e-52 | 174 |
| MS.gene040726.t1 | MTR_6g445180 | 48.673 | 113 | 57 | 1 | 362 | 474 | 30 | 141 | 2.25e-32 | 121 |
| MS.gene040726.t1 | MTR_6g060410 | 56.436 | 101 | 40 | 2 | 26 | 125 | 76 | 173 | 8.20e-27 | 107 |
| MS.gene040726.t1 | MTR_1g013060 | 50.000 | 108 | 46 | 3 | 20 | 126 | 10 | 110 | 9.02e-24 | 99.8 |
| MS.gene040726.t1 | MTR_4g080290 | 54.839 | 93 | 38 | 2 | 26 | 117 | 16 | 105 | 1.96e-22 | 92.4 |
| MS.gene040726.t1 | MTR_6g022070 | 33.835 | 133 | 86 | 2 | 142 | 273 | 33 | 164 | 1.42e-13 | 72.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene040726.t1 | AT4G38180 | 30.827 | 266 | 144 | 6 | 131 | 361 | 396 | 656 | 1.10e-26 | 114 |
| MS.gene040726.t1 | AT4G15090 | 29.876 | 241 | 135 | 4 | 131 | 339 | 372 | 610 | 1.23e-26 | 114 |
| MS.gene040726.t1 | AT4G15090 | 29.876 | 241 | 135 | 4 | 131 | 339 | 372 | 610 | 1.23e-26 | 114 |
| MS.gene040726.t1 | AT4G15090 | 29.876 | 241 | 135 | 4 | 131 | 339 | 372 | 610 | 1.23e-26 | 114 |
| MS.gene040726.t1 | AT4G15090 | 29.876 | 241 | 135 | 4 | 131 | 339 | 372 | 610 | 1.23e-26 | 114 |
| MS.gene040726.t1 | AT4G15090 | 29.876 | 241 | 135 | 4 | 131 | 339 | 372 | 610 | 1.23e-26 | 114 |
| MS.gene040726.t1 | AT3G22170 | 28.926 | 242 | 138 | 5 | 131 | 340 | 381 | 620 | 3.63e-24 | 106 |
| MS.gene040726.t1 | AT3G22170 | 28.926 | 242 | 138 | 5 | 131 | 340 | 381 | 620 | 3.63e-24 | 106 |
| MS.gene040726.t1 | AT4G38170 | 28.272 | 191 | 132 | 3 | 97 | 284 | 125 | 313 | 4.63e-20 | 93.6 |
| MS.gene040726.t1 | AT2G32250 | 28.270 | 237 | 136 | 5 | 131 | 335 | 316 | 550 | 3.31e-19 | 91.3 |
| MS.gene040726.t1 | AT2G32250 | 28.571 | 231 | 131 | 5 | 137 | 335 | 322 | 550 | 3.66e-19 | 91.3 |
| MS.gene040726.t1 | AT2G32250 | 28.571 | 231 | 131 | 5 | 137 | 335 | 322 | 550 | 3.66e-19 | 91.3 |
| MS.gene040726.t1 | AT2G32250 | 28.571 | 231 | 131 | 5 | 137 | 335 | 281 | 509 | 3.97e-19 | 91.3 |
| MS.gene040726.t1 | AT2G32250 | 28.571 | 231 | 131 | 5 | 137 | 335 | 322 | 550 | 3.97e-19 | 91.3 |
| MS.gene040726.t1 | AT2G32250 | 28.571 | 231 | 131 | 5 | 137 | 335 | 322 | 550 | 3.97e-19 | 91.3 |
| MS.gene040726.t1 | AT2G32250 | 28.571 | 231 | 131 | 5 | 137 | 335 | 322 | 550 | 3.97e-19 | 91.3 |
| MS.gene040726.t1 | AT2G32250 | 28.571 | 231 | 131 | 5 | 137 | 335 | 281 | 509 | 4.29e-19 | 90.9 |
| MS.gene040726.t1 | AT1G76320 | 28.511 | 235 | 128 | 5 | 140 | 340 | 318 | 546 | 1.18e-18 | 89.4 |
| MS.gene040726.t1 | AT1G76320 | 28.511 | 235 | 128 | 5 | 140 | 340 | 318 | 546 | 1.32e-18 | 89.4 |
| MS.gene040726.t1 | AT1G76320 | 28.511 | 235 | 128 | 5 | 140 | 340 | 318 | 546 | 1.32e-18 | 89.4 |
| MS.gene040726.t1 | AT1G76320 | 28.511 | 235 | 128 | 5 | 140 | 340 | 318 | 546 | 1.39e-18 | 89.4 |
| MS.gene040726.t1 | AT4G19990 | 26.800 | 250 | 147 | 6 | 131 | 346 | 263 | 510 | 7.87e-18 | 87.0 |
| MS.gene040726.t1 | AT4G19990 | 26.800 | 250 | 147 | 6 | 131 | 346 | 320 | 567 | 7.92e-18 | 87.0 |
| MS.gene040726.t1 | AT4G19990 | 26.800 | 250 | 147 | 6 | 131 | 346 | 320 | 567 | 7.92e-18 | 87.0 |
| MS.gene040726.t1 | AT4G19990 | 26.800 | 250 | 147 | 6 | 131 | 346 | 320 | 567 | 8.80e-18 | 87.0 |
| MS.gene040726.t1 | AT4G19990 | 26.800 | 250 | 147 | 6 | 131 | 346 | 320 | 567 | 9.23e-18 | 87.0 |
| MS.gene040726.t1 | AT4G19990 | 26.800 | 250 | 147 | 6 | 131 | 346 | 320 | 567 | 9.23e-18 | 87.0 |
| MS.gene040726.t1 | AT4G19990 | 26.800 | 250 | 147 | 6 | 131 | 346 | 334 | 581 | 1.12e-17 | 86.7 |
| MS.gene040726.t1 | AT3G06250 | 24.126 | 286 | 181 | 3 | 96 | 349 | 434 | 715 | 1.84e-17 | 85.9 |
| MS.gene040726.t1 | AT3G06250 | 24.126 | 286 | 181 | 3 | 96 | 349 | 434 | 715 | 1.84e-17 | 85.9 |
| MS.gene040726.t1 | AT3G06250 | 24.126 | 286 | 181 | 3 | 96 | 349 | 434 | 715 | 1.84e-17 | 85.9 |
| MS.gene040726.t1 | AT2G27110 | 29.114 | 158 | 109 | 1 | 127 | 284 | 339 | 493 | 2.78e-17 | 85.5 |
| MS.gene040726.t1 | AT2G27110 | 29.114 | 158 | 109 | 1 | 127 | 284 | 339 | 493 | 2.78e-17 | 85.5 |
| MS.gene040726.t1 | AT2G27110 | 29.114 | 158 | 109 | 1 | 127 | 284 | 194 | 348 | 3.83e-17 | 84.7 |
| MS.gene040726.t1 | AT5G18960 | 24.476 | 286 | 180 | 4 | 96 | 349 | 458 | 739 | 6.47e-16 | 81.3 |
| MS.gene040726.t1 | AT5G18960 | 24.476 | 286 | 180 | 4 | 96 | 349 | 458 | 739 | 6.47e-16 | 81.3 |
| MS.gene040726.t1 | AT1G52520 | 30.769 | 156 | 103 | 4 | 131 | 284 | 393 | 545 | 2.27e-14 | 76.3 |
| MS.gene040726.t1 | AT1G80010 | 25.738 | 237 | 137 | 5 | 137 | 335 | 423 | 658 | 7.01e-14 | 74.7 |
Find 84 sgRNAs with CRISPR-Local
Find 143 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAAATCATCATTCTCATTTA+AGG | 0.082094 | 1.2:+34699346 | None:intergenic |
| AGCTTAATTTGGTTGAATTT+TGG | 0.141638 | 1.2:-34699085 | MS.gene040726:CDS |
| CTTGAATACGAAGCTTAATT+TGG | 0.179939 | 1.2:-34699096 | MS.gene040726:CDS |
| ATTGAAGGCATGTTCTAAAT+TGG | 0.197063 | 1.2:-34698592 | MS.gene040726:CDS |
| GAGAGTGAAAATTCTTTCTT+TGG | 0.202144 | 1.2:-34699125 | MS.gene040726:CDS |
| TGTCAATAGGTGGACAAAAT+TGG | 0.295796 | 1.2:-34698652 | MS.gene040726:CDS |
| CCGAAGAATTTGAATTTGAA+TGG | 0.311875 | 1.2:-34699283 | MS.gene040726:CDS |
| ATCGTTTCAAGTCATGTGTT+TGG | 0.355775 | 1.2:-34699319 | MS.gene040726:CDS |
| ACTGAAACAAGAGATAAAAT+TGG | 0.372858 | 1.2:-34700253 | MS.gene040726:CDS |
| CCATTCAAATTCAAATTCTT+CGG | 0.377527 | 1.2:+34699283 | None:intergenic |
| CAAGCAATTACATTGTCAAT+AGG | 0.377587 | 1.2:-34698665 | MS.gene040726:CDS |
| CCACAACCTTTGGTATTTGA+CGG | 0.390822 | 1.2:+34698345 | None:intergenic |
| CCTTTGGTATTTGACGGTTC+AGG | 0.412845 | 1.2:+34698351 | None:intergenic |
| GAGATAAAATTGGTGTCAAA+TGG | 0.413160 | 1.2:-34700243 | MS.gene040726:CDS |
| CAAGTCATGTGTTTGGAACT+CGG | 0.419429 | 1.2:-34699312 | MS.gene040726:CDS |
| GTTGTGGAAAACGGATGAAA+GGG | 0.442696 | 1.2:-34698329 | MS.gene040726:CDS |
| TTTATAGATATATTTATGGC+TGG | 0.453272 | 1.2:-34699173 | MS.gene040726:CDS |
| ACATATTTCAGAGTGAGTTA+TGG | 0.453502 | 1.2:-34698920 | MS.gene040726:CDS |
| AGAGTGAAAATTCTTTCTTT+GGG | 0.454732 | 1.2:-34699124 | MS.gene040726:CDS |
| TAGGAATATTTGTATGGAGA+TGG | 0.458385 | 1.2:-34700467 | None:intergenic |
| TATTTGATACTTTGAAAGAA+GGG | 0.468084 | 1.2:-34700330 | MS.gene040726:CDS |
| TGGAATTGAAGGAACAAAAC+AGG | 0.473791 | 1.2:-34698880 | MS.gene040726:CDS |
| GTATTTGATACTTTGAAAGA+AGG | 0.476271 | 1.2:-34700331 | MS.gene040726:CDS |
| CTATTGACAATGTAATTGCT+TGG | 0.476754 | 1.2:+34698666 | None:intergenic |
| ATACCAAAGGTTGTGGAAAA+CGG | 0.477804 | 1.2:-34698338 | MS.gene040726:CDS |
| CTCAAAAGAAGGATTTAAAG+TGG | 0.479356 | 1.2:-34700206 | MS.gene040726:CDS |
| CTTGATAATGTTGTGGTCAA+TGG | 0.486394 | 1.2:-34698831 | MS.gene040726:CDS |
| ATTGTTTAAATGCATGCATA+TGG | 0.486947 | 1.2:-34698532 | MS.gene040726:CDS |
| TTCAGCTCAGCATCACACTT+TGG | 0.492382 | 1.2:+34700370 | None:intergenic |
| AGATATTGATTTCAAAAGCA+TGG | 0.494922 | 1.2:-34698560 | MS.gene040726:CDS |
| TTCTATACTTGATAATGTTG+TGG | 0.499836 | 1.2:-34698838 | MS.gene040726:CDS |
| ATTTATGAAGAGGAATTTGT+GGG | 0.508797 | 1.2:+34698216 | None:intergenic |
| TTGAGTTGGAAGAAAATGGT+TGG | 0.512514 | 1.2:-34699241 | MS.gene040726:CDS |
| AATTTATGAAGAGGAATTTG+TGG | 0.514420 | 1.2:+34698215 | None:intergenic |
| TCGACGTGCATCCTCAAAGC+TGG | 0.514623 | 1.2:+34698987 | None:intergenic |
| GATATTGATTTCAAAAGCAT+GGG | 0.516861 | 1.2:-34698559 | MS.gene040726:CDS |
| CCGTCAAATACCAAAGGTTG+TGG | 0.517647 | 1.2:-34698345 | MS.gene040726:CDS |
| CTTTCTGTATTAAAGGGGAG+AGG | 0.520186 | 1.2:-34698702 | MS.gene040726:intron |
| TTTCCATCACAATCAAATAC+AGG | 0.520696 | 1.2:+34698618 | None:intergenic |
| AATATATCTATAAAATAAGC+TGG | 0.526487 | 1.2:+34699182 | None:intergenic |
| AAAGATAGATAAGCCTGGAT+TGG | 0.527667 | 1.2:-34700179 | MS.gene040726:CDS |
| GGTTGTGGAAAACGGATGAA+AGG | 0.530143 | 1.2:-34698330 | MS.gene040726:CDS |
| TGTGTAAATTGTGGAATTGA+AGG | 0.530191 | 1.2:-34698891 | MS.gene040726:CDS |
| TCGATTTAGAGAAGCATGGT+AGG | 0.530992 | 1.2:-34698968 | MS.gene040726:CDS |
| TTCAAATTCAAATTCTTCGG+AGG | 0.533453 | 1.2:+34699286 | None:intergenic |
| TACAACCCTCACTGTAAATG+AGG | 0.533912 | 1.2:+34698484 | None:intergenic |
| TAGAAAACAAGTCGGAGGAA+TGG | 0.535352 | 1.2:-34700396 | MS.gene040726:CDS |
| AAAAGAAATTTGACACGGGA+GGG | 0.541490 | 1.2:-34700124 | MS.gene040726:CDS |
| TCTTACCACAATTTATGAAG+AGG | 0.544607 | 1.2:+34698206 | None:intergenic |
| TGTGGAAAACGGATGAAAGG+GGG | 0.547137 | 1.2:-34698327 | MS.gene040726:CDS |
| TTGTGATGGAAATGTATTGA+AGG | 0.547783 | 1.2:-34698607 | MS.gene040726:CDS |
| TCATCACTAATAACCAATCC+AGG | 0.557233 | 1.2:+34700166 | None:intergenic |
| GCTGAGCTGAAACCTGTGAT+TGG | 0.560694 | 1.2:-34700358 | MS.gene040726:CDS |
| TGGAATGCATGTGTAAATTG+TGG | 0.561229 | 1.2:-34698900 | MS.gene040726:CDS |
| TCAAATACCTTACCAATCAC+AGG | 0.564058 | 1.2:+34700346 | None:intergenic |
| TTGTGGAAAACGGATGAAAG+GGG | 0.564062 | 1.2:-34698328 | MS.gene040726:CDS |
| AGACCTGTATTTGATTGTGA+TGG | 0.565362 | 1.2:-34698621 | MS.gene040726:CDS |
| TTTAAATGCATGCATATGGC+TGG | 0.568389 | 1.2:-34698528 | MS.gene040726:CDS |
| GTGGAAAACGGATGAAAGGG+GGG | 0.569156 | 1.2:-34698326 | MS.gene040726:CDS |
| ATTTGATACTTTGAAAGAAG+GGG | 0.571831 | 1.2:-34700329 | MS.gene040726:CDS |
| GCAATTACATTGTCAATAGG+TGG | 0.576216 | 1.2:-34698662 | MS.gene040726:CDS |
| CTGCTCCTCATTTACAGTGA+GGG | 0.579878 | 1.2:-34698489 | MS.gene040726:CDS |
| TCCTCAAAGCTGGAAAAGAG+TGG | 0.595349 | 1.2:+34698997 | None:intergenic |
| GCTGAAACCTGTGATTGGTA+AGG | 0.600549 | 1.2:-34700353 | MS.gene040726:CDS |
| TTGTCTAATATGAAGAGCGA+TGG | 0.601654 | 1.2:-34698447 | MS.gene040726:CDS |
| CGATTTAGAGAAGCATGGTA+GGG | 0.608691 | 1.2:-34698967 | MS.gene040726:CDS |
| AACACCCTCTGATGATGTGG+AGG | 0.611936 | 1.2:-34698418 | MS.gene040726:CDS |
| AACTCATCGAATTCTTCTGT+AGG | 0.615846 | 1.2:+34700418 | None:intergenic |
| ATCAACACCCTCTGATGATG+TGG | 0.617562 | 1.2:-34698421 | MS.gene040726:CDS |
| AAAAGCCTCCACATCATCAG+AGG | 0.617969 | 1.2:+34698413 | None:intergenic |
| GTGTTCAAGAGAATTGATGA+TGG | 0.619383 | 1.2:-34700085 | MS.gene040726:intron |
| CACGGGAGGGATGTAATGCA+AGG | 0.621834 | 1.2:-34700111 | MS.gene040726:CDS |
| TGTTGTGGTCAATGGCACAA+AGG | 0.642556 | 1.2:-34698823 | MS.gene040726:intron |
| TTGGTATTTGACGGTTCAGG+CGG | 0.646585 | 1.2:+34698354 | None:intergenic |
| CGATGAGTTAGAAAACAAGT+CGG | 0.649037 | 1.2:-34700404 | MS.gene040726:CDS |
| CCTGAACCGTCAAATACCAA+AGG | 0.658134 | 1.2:-34698351 | MS.gene040726:CDS |
| TGAGTTAGAAAACAAGTCGG+AGG | 0.661664 | 1.2:-34700401 | MS.gene040726:CDS |
| AAAGCCTCCACATCATCAGA+GGG | 0.674054 | 1.2:+34698414 | None:intergenic |
| CACGTCGATTTAGAGAAGCA+TGG | 0.677798 | 1.2:-34698972 | MS.gene040726:CDS |
| AAACTTTCAGAAAAGGTGGG+TGG | 0.688648 | 1.2:-34699371 | MS.gene040726:intron |
| TGTATGATCTTAGAAGCATG+TGG | 0.692695 | 1.2:-34699208 | MS.gene040726:CDS |
| ACTGCTCCTCATTTACAGTG+AGG | 0.695763 | 1.2:-34698490 | MS.gene040726:CDS |
| AGCAACAACAAAAGAGAACG+AGG | 0.703541 | 1.2:-34698287 | MS.gene040726:CDS |
| ATTCTGCTTTAGAAGCACAG+AGG | 0.737981 | 1.2:-34699052 | MS.gene040726:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAATTTCTTTTTCTATTTTT+AGG | + | chr1.2:34698539-34698558 | None:intergenic | 10.0% |
| !! | AATATATCTATAAAATAAGC+TGG | + | chr1.2:34699493-34699512 | None:intergenic | 15.0% |
| !! | AAAATCATCATTCTCATTTA+AGG | + | chr1.2:34699329-34699348 | None:intergenic | 20.0% |
| !! | AAAGAAACAATTGTTAAGAT+CGG | - | chr1.2:34698667-34698686 | MS.gene040726:CDS | 20.0% |
| !! | ACATATTCTTTCTGTATTAA+AGG | - | chr1.2:34699963-34699982 | MS.gene040726:intron | 20.0% |
| !! | ATAGAAAAAGAAATTTGACA+CGG | - | chr1.2:34698543-34698562 | MS.gene040726:CDS | 20.0% |
| !! | ATATTCTTTCTGTATTAAAG+GGG | - | chr1.2:34699965-34699984 | MS.gene040726:intron | 20.0% |
| !! | CATATTCTTTCTGTATTAAA+GGG | - | chr1.2:34699964-34699983 | MS.gene040726:intron | 20.0% |
| !! | TCTTAAAAAACTTTCAGAAA+AGG | - | chr1.2:34699294-34699313 | MS.gene040726:CDS | 20.0% |
| !! | TTTATAGATATATTTATGGC+TGG | - | chr1.2:34699499-34699518 | MS.gene040726:intron | 20.0% |
| !!! | CAATTGAAAGTGTTTTTAAT+GGG | - | chr1.2:34699242-34699261 | MS.gene040726:CDS | 20.0% |
| !!! | GAGATTTTCAAAAAATTTCA+AGG | - | chr1.2:34698819-34698838 | MS.gene040726:intron | 20.0% |
| !!! | TATTTGATACTTTGAAAGAA+GGG | - | chr1.2:34698342-34698361 | MS.gene040726:CDS | 20.0% |
| ! | AAAAAACTTTCAGAAAAGGT+GGG | - | chr1.2:34699298-34699317 | MS.gene040726:CDS | 25.0% |
| ! | ACTGAAACAAGAGATAAAAT+TGG | - | chr1.2:34698419-34698438 | MS.gene040726:CDS | 25.0% |
| ! | AGAGTGAAAATTCTTTCTTT+GGG | - | chr1.2:34699548-34699567 | MS.gene040726:intron | 25.0% |
| ! | AGTATGACCTTCATAAAATT+TGG | + | chr1.2:34698627-34698646 | None:intergenic | 25.0% |
| ! | ATTGTTTAAATGCATGCATA+TGG | - | chr1.2:34700140-34700159 | MS.gene040726:CDS | 25.0% |
| ! | CCATTCAAATTCAAATTCTT+CGG | + | chr1.2:34699392-34699411 | None:intergenic | 25.0% |
| ! | CGAAAAAATTACTCTTTGTT+TGG | - | chr1.2:34698992-34699011 | MS.gene040726:CDS | 25.0% |
| ! | GAAAGGTTATCAAATATTGA+AGG | - | chr1.2:34698757-34698776 | MS.gene040726:intron | 25.0% |
| ! | TAAAAAACTTTCAGAAAAGG+TGG | - | chr1.2:34699297-34699316 | MS.gene040726:CDS | 25.0% |
| ! | TAGAAAAAGAAATTTGACAC+GGG | - | chr1.2:34698544-34698563 | MS.gene040726:CDS | 25.0% |
| !! | ATTATGTGTCTGATAATGAA+GGG | - | chr1.2:34698933-34698952 | MS.gene040726:CDS | 25.0% |
| !! | ATTTGATACTTTGAAAGAAG+GGG | - | chr1.2:34698343-34698362 | MS.gene040726:CDS | 25.0% |
| !! | CTTAACAATTGTTTCTTTCT+AGG | + | chr1.2:34698665-34698684 | None:intergenic | 25.0% |
| !! | GAAGTTAAAACATGTGTTTT+GGG | - | chr1.2:34698955-34698974 | MS.gene040726:CDS | 25.0% |
| !! | GTATTTGATACTTTGAAAGA+AGG | - | chr1.2:34698341-34698360 | MS.gene040726:CDS | 25.0% |
| !! | TATTTTCTTTGCTCAAAAGA+AGG | - | chr1.2:34698455-34698474 | MS.gene040726:CDS | 25.0% |
| !!! | AGATATTGATTTCAAAAGCA+TGG | - | chr1.2:34700112-34700131 | MS.gene040726:CDS | 25.0% |
| !!! | AGCTTAATTTGGTTGAATTT+TGG | - | chr1.2:34699587-34699606 | MS.gene040726:intron | 25.0% |
| !!! | GATATTGATTTCAAAAGCAT+GGG | - | chr1.2:34700113-34700132 | MS.gene040726:CDS | 25.0% |
| !!! | GCAATTGAAAGTGTTTTTAA+TGG | - | chr1.2:34699241-34699260 | MS.gene040726:CDS | 25.0% |
| !!! | TATTATCAGTGATTTTGAGT+TGG | - | chr1.2:34699417-34699436 | MS.gene040726:intron | 25.0% |
| !!! | TTCTATACTTGATAATGTTG+TGG | - | chr1.2:34699834-34699853 | MS.gene040726:intron | 25.0% |
| !!! | TTGAATTTTTTCAGGTACAT+TGG | + | chr1.2:34700292-34700311 | None:intergenic | 25.0% |
| AAAAATTATGCTCATGTTGC+TGG | - | chr1.2:34698377-34698396 | MS.gene040726:CDS | 30.0% | |
| AAATATTGAAGGAGCAAGTT+GGG | - | chr1.2:34698768-34698787 | MS.gene040726:intron | 30.0% | |
| ACATATTTCAGAGTGAGTTA+TGG | - | chr1.2:34699752-34699771 | MS.gene040726:intron | 30.0% | |
| ATCGTCAAAGTATAACCTTT+GGG | - | chr1.2:34699095-34699114 | MS.gene040726:CDS | 30.0% | |
| CAAGCAATTACATTGTCAAT+AGG | - | chr1.2:34700007-34700026 | MS.gene040726:intron | 30.0% | |
| CCGAAGAATTTGAATTTGAA+TGG | - | chr1.2:34699389-34699408 | MS.gene040726:intron | 30.0% | |
| CTATTGACAATGTAATTGCT+TGG | + | chr1.2:34700009-34700028 | None:intergenic | 30.0% | |
| CTCAAAAGAAGGATTTAAAG+TGG | - | chr1.2:34698466-34698485 | MS.gene040726:CDS | 30.0% | |
| CTTGAATACGAAGCTTAATT+TGG | - | chr1.2:34699576-34699595 | MS.gene040726:intron | 30.0% | |
| GAAAAAAAGATAGATAAGCC+TGG | - | chr1.2:34698488-34698507 | MS.gene040726:CDS | 30.0% | |
| GAGAGTGAAAATTCTTTCTT+TGG | - | chr1.2:34699547-34699566 | MS.gene040726:intron | 30.0% | |
| GTTGGGAGTTATGAAAATAT+AGG | - | chr1.2:34698785-34698804 | MS.gene040726:intron | 30.0% | |
| TGTAAAATGTTTGACTCTGA+AGG | - | chr1.2:34699928-34699947 | MS.gene040726:intron | 30.0% | |
| TGTGTAAATTGTGGAATTGA+AGG | - | chr1.2:34699781-34699800 | MS.gene040726:intron | 30.0% | |
| TTCAAATTCAAATTCTTCGG+AGG | + | chr1.2:34699389-34699408 | None:intergenic | 30.0% | |
| TTTCCATCACAATCAAATAC+AGG | + | chr1.2:34700057-34700076 | None:intergenic | 30.0% | |
| TTTGATGCAGATATGTTCAT+TGG | - | chr1.2:34698866-34698885 | MS.gene040726:CDS | 30.0% | |
| ! | ATTGAAGGCATGTTCTAAAT+TGG | - | chr1.2:34700080-34700099 | MS.gene040726:intron | 30.0% |
| ! | GATTATGTGTCTGATAATGA+AGG | - | chr1.2:34698932-34698951 | MS.gene040726:CDS | 30.0% |
| ! | GGAAGTTAAAACATGTGTTT+TGG | - | chr1.2:34698954-34698973 | MS.gene040726:CDS | 30.0% |
| ! | TTGTGATGGAAATGTATTGA+AGG | - | chr1.2:34700065-34700084 | MS.gene040726:intron | 30.0% |
| !! | GAAGTGTCCAAATTTTATGA+AGG | - | chr1.2:34698617-34698636 | MS.gene040726:CDS | 30.0% |
| !! | GAGATAAAATTGGTGTCAAA+TGG | - | chr1.2:34698429-34698448 | MS.gene040726:CDS | 30.0% |
| !!! | GAGACTTTTTTGAAAGCAAT+GGG | - | chr1.2:34699166-34699185 | MS.gene040726:CDS | 30.0% |
| !!! | GATTTTGAGTTGGAAGAAAA+TGG | - | chr1.2:34699427-34699446 | MS.gene040726:intron | 30.0% |
| !!! | GGAAGAACTTGAATTTTTTC+AGG | + | chr1.2:34700300-34700319 | None:intergenic | 30.0% |
| !!! | TGAGACTTTTTTGAAAGCAA+TGG | - | chr1.2:34699165-34699184 | MS.gene040726:CDS | 30.0% |
| AAAAAGAAATTTGACACGGG+AGG | - | chr1.2:34698547-34698566 | MS.gene040726:CDS | 35.0% | |
| AAAAAGAAGAGTCGTTTGTG+TGG | - | chr1.2:34699137-34699156 | MS.gene040726:CDS | 35.0% | |
| AAAAGAAATTTGACACGGGA+GGG | - | chr1.2:34698548-34698567 | MS.gene040726:CDS | 35.0% | |
| AAAGATAGATAAGCCTGGAT+TGG | - | chr1.2:34698493-34698512 | MS.gene040726:CDS | 35.0% | |
| AACAATTGTTAAGATCGGCA+AGG | - | chr1.2:34698672-34698691 | MS.gene040726:CDS | 35.0% | |
| AACTCATCGAATTCTTCTGT+AGG | + | chr1.2:34698257-34698276 | None:intergenic | 35.0% | |
| ACAGAAAGAATATGTCGACA+TGG | + | chr1.2:34699958-34699977 | None:intergenic | 35.0% | |
| AGACCTGTATTTGATTGTGA+TGG | - | chr1.2:34700051-34700070 | MS.gene040726:intron | 35.0% | |
| ATACCAAAGGTTGTGGAAAA+CGG | - | chr1.2:34700334-34700353 | MS.gene040726:CDS | 35.0% | |
| CAAATATTGAAGGAGCAAGT+TGG | - | chr1.2:34698767-34698786 | MS.gene040726:intron | 35.0% | |
| CATCGTCAAAGTATAACCTT+TGG | - | chr1.2:34699094-34699113 | MS.gene040726:CDS | 35.0% | |
| CGATGAGTTAGAAAACAAGT+CGG | - | chr1.2:34698268-34698287 | MS.gene040726:CDS | 35.0% | |
| GATAATAACAGATCAAGACC+AGG | - | chr1.2:34699207-34699226 | MS.gene040726:CDS | 35.0% | |
| GCAATTACATTGTCAATAGG+TGG | - | chr1.2:34700010-34700029 | MS.gene040726:intron | 35.0% | |
| GTGTTCAAGAGAATTGATGA+TGG | - | chr1.2:34698587-34698606 | MS.gene040726:CDS | 35.0% | |
| TCAAATACCTTACCAATCAC+AGG | + | chr1.2:34698329-34698348 | None:intergenic | 35.0% | |
| TCATCACTAATAACCAATCC+AGG | + | chr1.2:34698509-34698528 | None:intergenic | 35.0% | |
| TCGTCAAAGTATAACCTTTG+GGG | - | chr1.2:34699096-34699115 | MS.gene040726:CDS | 35.0% | |
| TGGAATGCATGTGTAAATTG+TGG | - | chr1.2:34699772-34699791 | MS.gene040726:intron | 35.0% | |
| TGGAATTGAAGGAACAAAAC+AGG | - | chr1.2:34699792-34699811 | MS.gene040726:intron | 35.0% | |
| TGTCAATAGGTGGACAAAAT+TGG | - | chr1.2:34700020-34700039 | MS.gene040726:intron | 35.0% | |
| TTGACGATGATGATTTACAC+CGG | + | chr1.2:34699083-34699102 | None:intergenic | 35.0% | |
| TTGTCTAATATGAAGAGCGA+TGG | - | chr1.2:34700225-34700244 | MS.gene040726:CDS | 35.0% | |
| TTTAAATGCATGCATATGGC+TGG | - | chr1.2:34700144-34700163 | MS.gene040726:CDS | 35.0% | |
| ! | AAGATTTTTGCACCATTCAC+CGG | - | chr1.2:34699061-34699080 | MS.gene040726:CDS | 35.0% |
| ! | ATCGTTTCAAGTCATGTGTT+TGG | - | chr1.2:34699353-34699372 | MS.gene040726:CDS | 35.0% |
| ! | ATTTTCACTCTCTGATCTTG+AGG | + | chr1.2:34699539-34699558 | None:intergenic | 35.0% |
| ! | CTTCTCATAGATTTTGCATG+TGG | - | chr1.2:34699266-34699285 | MS.gene040726:CDS | 35.0% |
| ! | TGTATGATCTTAGAAGCATG+TGG | - | chr1.2:34699464-34699483 | MS.gene040726:intron | 35.0% |
| ! | TTACTCTTTGTTTGGAGATG+TGG | - | chr1.2:34699000-34699019 | MS.gene040726:CDS | 35.0% |
| !! | CTTGATAATGTTGTGGTCAA+TGG | - | chr1.2:34699841-34699860 | MS.gene040726:intron | 35.0% |
| !! | TTGAGTTGGAAGAAAATGGT+TGG | - | chr1.2:34699431-34699450 | MS.gene040726:intron | 35.0% |
| !!! | ACTTTTTTGAAAGCAATGGG+TGG | - | chr1.2:34699169-34699188 | MS.gene040726:CDS | 35.0% |
| !!! | CTTTTTTGAAAGCAATGGGT+GGG | - | chr1.2:34699170-34699189 | MS.gene040726:CDS | 35.0% |
| AAACTTTCAGAAAAGGTGGG+TGG | - | chr1.2:34699301-34699320 | MS.gene040726:CDS | 40.0% | |
| AGCAACAACAAAAGAGAACG+AGG | - | chr1.2:34700385-34700404 | MS.gene040726:CDS | 40.0% | |
| ATGTAAAAATGCAGCCCCAA+AGG | + | chr1.2:34699113-34699132 | None:intergenic | 40.0% | |
| CAATTGCATTTGTCATAGCC+TGG | + | chr1.2:34699228-34699247 | None:intergenic | 40.0% | |
| CCACAACCTTTGGTATTTGA+CGG | + | chr1.2:34700330-34700349 | None:intergenic | 40.0% | |
| CTTTCTGTATTAAAGGGGAG+AGG | - | chr1.2:34699970-34699989 | MS.gene040726:intron | 40.0% | |
| GCTTGCAATAGAGCTAATGT+GGG | - | chr1.2:34698728-34698747 | MS.gene040726:intron | 40.0% | |
| GTTGTGGAAAACGGATGAAA+GGG | - | chr1.2:34700343-34700362 | MS.gene040726:CDS | 40.0% | |
| TACAACCCTCACTGTAAATG+AGG | + | chr1.2:34700191-34700210 | None:intergenic | 40.0% | |
| TAGAAAACAAGTCGGAGGAA+TGG | - | chr1.2:34698276-34698295 | MS.gene040726:CDS | 40.0% | |
| TGAGTTAGAAAACAAGTCGG+AGG | - | chr1.2:34698271-34698290 | MS.gene040726:CDS | 40.0% | |
| TGATGATTTACACCGGTGAA+TGG | + | chr1.2:34699076-34699095 | None:intergenic | 40.0% | |
| TGCTTGCAATAGAGCTAATG+TGG | - | chr1.2:34698727-34698746 | MS.gene040726:intron | 40.0% | |
| TTGTGGAAAACGGATGAAAG+GGG | - | chr1.2:34700344-34700363 | MS.gene040726:CDS | 40.0% | |
| ! | CAAGTCATGTGTTTGGAACT+CGG | - | chr1.2:34699360-34699379 | MS.gene040726:CDS | 40.0% |
| ! | CGATTTAGAGAAGCATGGTA+GGG | - | chr1.2:34699705-34699724 | MS.gene040726:intron | 40.0% |
| ! | GATGATGTGGAGGCTTTTAT+CGG | - | chr1.2:34700264-34700283 | MS.gene040726:CDS | 40.0% |
| ! | TCGATTTAGAGAAGCATGGT+AGG | - | chr1.2:34699704-34699723 | MS.gene040726:intron | 40.0% |
| !! | AAACATGTGTTTTGGGCTGA+TGG | - | chr1.2:34698962-34698981 | MS.gene040726:CDS | 40.0% |
| !! | ATTCTGCTTTAGAAGCACAG+AGG | - | chr1.2:34699620-34699639 | MS.gene040726:intron | 40.0% |
| AAAAGCCTCCACATCATCAG+AGG | + | chr1.2:34700262-34700281 | None:intergenic | 45.0% | |
| AAAGCCTCCACATCATCAGA+GGG | + | chr1.2:34700261-34700280 | None:intergenic | 45.0% | |
| ACTGCTCCTCATTTACAGTG+AGG | - | chr1.2:34700182-34700201 | MS.gene040726:CDS | 45.0% | |
| CCGTCAAATACCAAAGGTTG+TGG | - | chr1.2:34700327-34700346 | MS.gene040726:CDS | 45.0% | |
| CCTGAACCGTCAAATACCAA+AGG | - | chr1.2:34700321-34700340 | MS.gene040726:CDS | 45.0% | |
| CCTTTGGTATTTGACGGTTC+AGG | + | chr1.2:34700324-34700343 | None:intergenic | 45.0% | |
| CTGCTCCTCATTTACAGTGA+GGG | - | chr1.2:34700183-34700202 | MS.gene040726:CDS | 45.0% | |
| GCTAATGTGGGAACTTCGAA+AGG | - | chr1.2:34698740-34698759 | MS.gene040726:intron | 45.0% | |
| GCTGAAACCTGTGATTGGTA+AGG | - | chr1.2:34698319-34698338 | MS.gene040726:CDS | 45.0% | |
| GGTTGTGGAAAACGGATGAA+AGG | - | chr1.2:34700342-34700361 | MS.gene040726:CDS | 45.0% | |
| TCCTCAAAGCTGGAAAAGAG+TGG | + | chr1.2:34699678-34699697 | None:intergenic | 45.0% | |
| TGTGGAAAACGGATGAAAGG+GGG | - | chr1.2:34700345-34700364 | MS.gene040726:CDS | 45.0% | |
| TGTTGTGGTCAATGGCACAA+AGG | - | chr1.2:34699849-34699868 | MS.gene040726:intron | 45.0% | |
| TTCAGCTCAGCATCACACTT+TGG | + | chr1.2:34698305-34698324 | None:intergenic | 45.0% | |
| TTGGTATTTGACGGTTCAGG+CGG | + | chr1.2:34700321-34700340 | None:intergenic | 45.0% | |
| ! | ATCAACACCCTCTGATGATG+TGG | - | chr1.2:34700251-34700270 | MS.gene040726:CDS | 45.0% |
| ! | CATCCGTTTTCCACAACCTT+TGG | + | chr1.2:34700340-34700359 | None:intergenic | 45.0% |
| ! | TCCACTCTTTTCCAGCTTTG+AGG | - | chr1.2:34699674-34699693 | MS.gene040726:intron | 45.0% |
| !! | CACGTCGATTTAGAGAAGCA+TGG | - | chr1.2:34699700-34699719 | MS.gene040726:intron | 45.0% |
| !!! | TTATTTTATAGATATATTTA+TGG | - | chr1.2:34699495-34699514 | MS.gene040726:intron | 5.0% |
| GATGAAAGGGGGGAAAGAGA+AGG | - | chr1.2:34700356-34700375 | MS.gene040726:CDS | 50.0% | |
| GCTGAGCTGAAACCTGTGAT+TGG | - | chr1.2:34698314-34698333 | MS.gene040726:CDS | 50.0% | |
| GTGGAAAACGGATGAAAGGG+GGG | - | chr1.2:34700346-34700365 | MS.gene040726:CDS | 50.0% | |
| ! | AACACCCTCTGATGATGTGG+AGG | - | chr1.2:34700254-34700273 | MS.gene040726:CDS | 50.0% |
| CACGGGAGGGATGTAATGCA+AGG | - | chr1.2:34698561-34698580 | MS.gene040726:CDS | 55.0% | |
| TCGACGTGCATCCTCAAAGC+TGG | + | chr1.2:34699688-34699707 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.2 | gene | 34698218 | 34700476 | 34698218 | ID=MS.gene040726 |
| chr1.2 | mRNA | 34698218 | 34700476 | 34698218 | ID=MS.gene040726.t1;Parent=MS.gene040726 |
| chr1.2 | exon | 34700086 | 34700476 | 34700086 | ID=MS.gene040726.t1.exon1;Parent=MS.gene040726.t1 |
| chr1.2 | CDS | 34700086 | 34700476 | 34700086 | ID=cds.MS.gene040726.t1;Parent=MS.gene040726.t1 |
| chr1.2 | exon | 34698824 | 34699383 | 34698824 | ID=MS.gene040726.t1.exon2;Parent=MS.gene040726.t1 |
| chr1.2 | CDS | 34698824 | 34699383 | 34698824 | ID=cds.MS.gene040726.t1;Parent=MS.gene040726.t1 |
| chr1.2 | exon | 34698218 | 34698709 | 34698218 | ID=MS.gene040726.t1.exon3;Parent=MS.gene040726.t1 |
| chr1.2 | CDS | 34698218 | 34698709 | 34698218 | ID=cds.MS.gene040726.t1;Parent=MS.gene040726.t1 |
| Gene Sequence |
| Protein sequence |
