AlfalfaGEDB | MS.gene040726

M. sativa cultivar XinJiangDaYe / MS.gene040726

KEGG: -
GO: -
PFAM: PF03101.18

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene040726.t1	ABN05718.1	48.9	745	115	2	1	479	56	800	7.50E-183	650.2

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene040726.t1	Q9SWG3	30.2	235	130	4	137	339	378	610	7.2e-25	116.7

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene040726.t1	A2Q1A1	48.9	745	115	2	1	479	56	800	5.4e-183	650.2

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene040726.t1	TF	FAR1

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene040726.t1	MTR_8g465780	60.150	133	53	0	182	314	1	133	3.60e-52	174
MS.gene040726.t1	MTR_6g445180	48.673	113	57	1	362	474	30	141	2.25e-32	121
MS.gene040726.t1	MTR_6g060410	56.436	101	40	2	26	125	76	173	8.20e-27	107
MS.gene040726.t1	MTR_1g013060	50.000	108	46	3	20	126	10	110	9.02e-24	99.8
MS.gene040726.t1	MTR_4g080290	54.839	93	38	2	26	117	16	105	1.96e-22	92.4
MS.gene040726.t1	MTR_6g022070	33.835	133	86	2	142	273	33	164	1.42e-13	72.0

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene040726.t1	AT4G38180	30.827	266	144	6	131	361	396	656	1.10e-26	114
MS.gene040726.t1	AT4G15090	29.876	241	135	4	131	339	372	610	1.23e-26	114
MS.gene040726.t1	AT4G15090	29.876	241	135	4	131	339	372	610	1.23e-26	114
MS.gene040726.t1	AT4G15090	29.876	241	135	4	131	339	372	610	1.23e-26	114
MS.gene040726.t1	AT4G15090	29.876	241	135	4	131	339	372	610	1.23e-26	114
MS.gene040726.t1	AT4G15090	29.876	241	135	4	131	339	372	610	1.23e-26	114
MS.gene040726.t1	AT3G22170	28.926	242	138	5	131	340	381	620	3.63e-24	106
MS.gene040726.t1	AT3G22170	28.926	242	138	5	131	340	381	620	3.63e-24	106
MS.gene040726.t1	AT4G38170	28.272	191	132	3	97	284	125	313	4.63e-20	93.6
MS.gene040726.t1	AT2G32250	28.270	237	136	5	131	335	316	550	3.31e-19	91.3

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Find 84 sgRNAs with CRISPR-Local

Find 143 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGAAATTTGACACGGGA+GGG	0.541490	1.2:-34700124	MS.gene040726:CDS
AAAAGCCTCCACATCATCAG+AGG	0.617969	1.2:+34698413	None:intergenic
AAAATCATCATTCTCATTTA+AGG	0.082094	1.2:+34699346	None:intergenic
AAACTTTCAGAAAAGGTGGG+TGG	0.688648	1.2:-34699371	MS.gene040726:intron
AAAGATAGATAAGCCTGGAT+TGG	0.527667	1.2:-34700179	MS.gene040726:CDS
AAAGCCTCCACATCATCAGA+GGG	0.674054	1.2:+34698414	None:intergenic
AACACCCTCTGATGATGTGG+AGG	0.611936	1.2:-34698418	MS.gene040726:CDS
AACTCATCGAATTCTTCTGT+AGG	0.615846	1.2:+34700418	None:intergenic
AATATATCTATAAAATAAGC+TGG	0.526487	1.2:+34699182	None:intergenic
AATTTATGAAGAGGAATTTG+TGG	0.514420	1.2:+34698215	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAATTATGCTCATGTTGC+TGG	-	chr1.2:34698377-34698396	MS.gene040726:CDS	30.0%
AAATATTGAAGGAGCAAGTT+GGG	-	chr1.2:34698768-34698787	MS.gene040726:intron	30.0%
ACATATTTCAGAGTGAGTTA+TGG	-	chr1.2:34699752-34699771	MS.gene040726:intron	30.0%
ATCGTCAAAGTATAACCTTT+GGG	-	chr1.2:34699095-34699114	MS.gene040726:CDS	30.0%
CAAGCAATTACATTGTCAAT+AGG	-	chr1.2:34700007-34700026	MS.gene040726:intron	30.0%
CCGAAGAATTTGAATTTGAA+TGG	-	chr1.2:34699389-34699408	MS.gene040726:intron	30.0%
CTATTGACAATGTAATTGCT+TGG	+	chr1.2:34700009-34700028	None:intergenic	30.0%
CTCAAAAGAAGGATTTAAAG+TGG	-	chr1.2:34698466-34698485	MS.gene040726:CDS	30.0%
CTTGAATACGAAGCTTAATT+TGG	-	chr1.2:34699576-34699595	MS.gene040726:intron	30.0%
GAAAAAAAGATAGATAAGCC+TGG	-	chr1.2:34698488-34698507	MS.gene040726:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1.2	gene	34698218	34700476	34698218	ID=MS.gene040726
chr1.2	mRNA	34698218	34700476	34698218	ID=MS.gene040726.t1;Parent=MS.gene040726
chr1.2	exon	34700086	34700476	34700086	ID=MS.gene040726.t1.exon1;Parent=MS.gene040726.t1
chr1.2	CDS	34700086	34700476	34700086	ID=cds.MS.gene040726.t1;Parent=MS.gene040726.t1
chr1.2	exon	34698824	34699383	34698824	ID=MS.gene040726.t1.exon2;Parent=MS.gene040726.t1
chr1.2	CDS	34698824	34699383	34698824	ID=cds.MS.gene040726.t1;Parent=MS.gene040726.t1
chr1.2	exon	34698218	34698709	34698218	ID=MS.gene040726.t1.exon3;Parent=MS.gene040726.t1
chr1.2	CDS	34698218	34698709	34698218	ID=cds.MS.gene040726.t1;Parent=MS.gene040726.t1

Gene Sequence

>MS.gene040726

ATGGAGATGGATGACAATGAAGTTGAATTCGATTCACCTACAGAAGAATTCGATGAGTTAGAAAACAAGTCGGAGGAATGGATTCCAAAGTGTGATGCTGAGCTGAAACCTGTGATTGGTAAGGTATTTGATACTTTGAAAGAAGGGGATGATTTCTATAAAAATTATGCTCATGTTGCTGGTTTTAGTGTGCGTAATTCGACTGAAACAAGAGATAAAATTGGTGTCAAATGGAAGTATTTTCTTTGCTCAAAAGAAGGATTTAAAGTGGAAAAAAAGATAGATAAGCCTGGATTGGTTATTAGTGATGATAGTTTGCCTAAAAATAGAAAAAGAAATTTGACACGGGAGGGATGTAATGCAAGGATTGTGTTCAAGAGAATTGATGATGGTAAATTTGAAGTGTCCAAATTTTATGAAGGTCATACTCACACACTTGTCTCACCTAGAAAGAAACAATTGTTAAGATCGGCAAGGAGAGTCAACAATGTTCATAAAAATTTATTGTTTGCTTGCAATAGAGCTAATGTGGGAACTTCGAAAGGTTATCAAATATTGAAGGAGCAAGTTGGGAGTTATGAAAATATAGGATGCACACAGAGAGATTTTCAAAAAATTTCAAGGAATATGAAAGAATTGATCAAAGATTTTGATGCAGATATGTTCATTGGTAATTTTAAAAGAAAACATGAAATGAATGAGTCATTTTTCTATGATTATGTGTCTGATAATGAAGGGAAGTTAAAACATGTGTTTTGGGCTGATGGCATTAGTCGAAAAAATTACTCTTTGTTTGGAGATGTGGTTTCATTTGACACTACATACAATACAAATAAATATTATAAGATTTTTGCACCATTCACCGGTGTAAATCATCATCGTCAAAGTATAACCTTTGGGGCTGCATTTTTACATGATGAAAAAGAAGAGTCGTTTGTGTGGTTGTTTGAGACTTTTTTGAAAGCAATGGGTGGGAATAAACATGTTATGATAATAACAGATCAAGACCAGGCTATGACAAATGCAATTGAAAGTGTTTTTAATGGGTCTTCTCATAGATTTTGCATGTGGCATATTCTTAAAAAACTTTCAGAAAAGGTGGGTGGCACCTTAAATGAGAATGATGATTTTAATAATCGTTTCAAGTCATGTGTTTGGAACTCGGAGTCCTCCGAAGAATTTGAATTTGAATGGAATAATATTATCAGTGATTTTGAGTTGGAAGAAAATGGTTGGCTTTCTACAATGTATGATCTTAGAAGCATGTGGATACCAGCTTATTTTATAGATATATTTATGGCTGGAATTTTGAGAACAACCTCAAGATCAGAGAGTGAAAATTCTTTCTTTGGGCACTTCTTGAATACGAAGCTTAATTTGGTTGAATTTTGGATGCGTTTTGATTCTGCTTTAGAAGCACAGAGGCACAAAGAACTTCTTGCAGATAATACTACACTCCACTCTTTTCCAGCTTTGAGGATGCACGTCGATTTAGAGAAGCATGGTAGGGAAGTTTATACTCATGAAAATTTTTACATATTTCAGAGTGAGTTATGGAATGCATGTGTAAATTGTGGAATTGAAGGAACAAAACAGGACGATGATGATTTAATATTTTCTATACTTGATAATGTTGTGGTCAATGGCACAAAGGTAAGCAAACATAGAGAAGTTGTTTTTAGTCTTTCTAATAACATTGCACATTGTTCATGTAAAATGTTTGACTCTGAAGGCATTCCATGTCGACATATTCTTTCTGTATTAAAGGGGAGAGGTTTTAGTGATATTCCAAGCAATTACATTGTCAATAGGTGGACAAAATTGGCAACAAGTAGACCTGTATTTGATTGTGATGGAAATGTATTGAAGGCATGTTCTAAATTGGAAAGTGAGAAGATATTGATTTCAAAAGCATGGGCACAATTGTTTAAATGCATGCATATGGCTGGTACAGATAAAGAGAAACTGCTCCTCATTTACAGTGAGGGTTGTAGTATTGAATCAAAATTGTCTAATATGAAGAGCGATGGTGTATCAACACCCTCTGATGATGTGGAGGCTTTTATCGGATCCAATGTACCTGAAAAAATTCAAGTTCTTCCGCCTGAACCGTCAAATACCAAAGGTTGTGGAAAACGGATGAAAGGGGGGAAAGAGAAGGCAATAGAGCAACAACAAAAGAGAACGAGGCTTTGCAAAACTTGTAAGCGATATGCATCACATGATAGTCGCAATTGTCCCACAAATTCCTCTTCATAA

Protein sequence

>MS.gene040726.t1

MEMDDNEVEFDSPTEEFDELENKSEEWIPKCDAELKPVIGKVFDTLKEGDDFYKNYAHVAGFSVRNSTETRDKIGVKWKYFLCSKEGFKVEKKIDKPGLVISDDSLPKNRKRNLTREGCNARIVFKRIDDEKVGGTLNENDDFNNRFKSCVWNSESSEEFEFEWNNIISDFELEENGWLSTMYDLRSMWIPAYFIDIFMAGILRTTSRSESENSFFGHFLNTKLNLVEFWMRFDSALEAQRHKELLADNTTLHSFPALRMHVDLEKHGREVYTHENFYIFQSELWNACVNCGIEGTKQDDDDLIFSILDNVVVNGTKGRGFSDIPSNYIVNRWTKLATSRPVFDCDGNVLKACSKLESEKILISKAWAQLFKCMHMAGTDKEKLLLIYSEGCSIESKLSNMKSDGVSTPSDDVEAFIGSNVPEKIQVLPPEPSNTKGCGKRMKGGKEKAIEQQQKRTRLCKTCKRYASHDSRNCPTNSSS