Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene040731.t1 | XP_024629356.1 | 59.9 | 736 | 28 | 2 | 1 | 469 | 1 | 736 | 1.60E-222 | 781.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene040731.t1 | Q9SZL8 | 33.5 | 167 | 101 | 4 | 7 | 166 | 70 | 233 | 1.7e-15 | 85.5 |
| MS.gene040731.t1 | Q9SZL8 | 25.9 | 174 | 90 | 3 | 173 | 307 | 467 | 640 | 2.2e-10 | 68.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene040731.t1 | A0A396JHA3 | 51.8 | 593 | 19 | 2 | 1 | 326 | 1 | 593 | 4.1e-143 | 517.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene040731.t1 | TF | FAR1 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene040731.t1 | MTR_7g074790 | 64.458 | 166 | 41 | 1 | 1 | 166 | 1 | 148 | 7.66e-70 | 222 |
| MS.gene040731.t1 | MTR_7g074790 | 37.600 | 125 | 58 | 5 | 350 | 457 | 97 | 218 | 5.38e-11 | 62.8 |
| MS.gene040731.t1 | MTR_7g061980 | 84.034 | 119 | 19 | 0 | 1 | 119 | 1 | 119 | 5.87e-66 | 208 |
| MS.gene040731.t1 | MTR_5g039760 | 53.398 | 206 | 66 | 4 | 1 | 200 | 1 | 182 | 1.12e-63 | 204 |
| MS.gene040731.t1 | MTR_0402s0040 | 32.028 | 434 | 247 | 17 | 10 | 410 | 26 | 444 | 8.86e-37 | 141 |
| MS.gene040731.t1 | MTR_3g058090 | 47.619 | 126 | 42 | 2 | 276 | 401 | 5 | 106 | 1.64e-28 | 108 |
| MS.gene040731.t1 | MTR_4g102720 | 34.320 | 169 | 77 | 2 | 5 | 173 | 2 | 136 | 7.62e-26 | 105 |
| MS.gene040731.t1 | MTR_4g069880 | 69.118 | 68 | 21 | 0 | 1 | 68 | 1 | 68 | 7.08e-24 | 95.1 |
| MS.gene040731.t1 | MTR_5g015480 | 43.902 | 123 | 65 | 3 | 10 | 129 | 56 | 177 | 4.46e-18 | 84.3 |
| MS.gene040731.t1 | MTR_2g070590 | 43.396 | 106 | 56 | 3 | 10 | 112 | 17 | 121 | 5.41e-17 | 77.4 |
| MS.gene040731.t1 | MTR_2g099430 | 47.727 | 88 | 44 | 2 | 33 | 119 | 26 | 112 | 4.35e-16 | 74.7 |
| MS.gene040731.t1 | MTR_6g017200 | 44.792 | 96 | 49 | 3 | 10 | 102 | 58 | 152 | 3.40e-15 | 73.2 |
| MS.gene040731.t1 | MTR_7g113010 | 40.157 | 127 | 60 | 3 | 10 | 134 | 457 | 569 | 7.62e-15 | 77.4 |
| MS.gene040731.t1 | MTR_1g019850 | 32.624 | 141 | 86 | 3 | 3 | 141 | 63 | 196 | 4.64e-14 | 72.0 |
| MS.gene040731.t1 | MTR_4g117620 | 84.848 | 33 | 5 | 0 | 425 | 457 | 35 | 67 | 1.30e-13 | 66.2 |
| MS.gene040731.t1 | MTR_5g045210 | 31.356 | 118 | 74 | 2 | 278 | 389 | 20 | 136 | 6.44e-13 | 67.8 |
| MS.gene040731.t1 | MTR_1g057920 | 43.333 | 90 | 47 | 3 | 10 | 96 | 34 | 122 | 3.07e-12 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene040731.t1 | AT4G38180 | 33.533 | 167 | 101 | 4 | 7 | 166 | 70 | 233 | 1.38e-15 | 80.1 |
| MS.gene040731.t1 | AT4G15090 | 22.872 | 188 | 107 | 2 | 156 | 305 | 426 | 613 | 1.81e-13 | 73.6 |
| MS.gene040731.t1 | AT4G15090 | 22.872 | 188 | 107 | 2 | 156 | 305 | 426 | 613 | 1.81e-13 | 73.6 |
| MS.gene040731.t1 | AT4G15090 | 22.872 | 188 | 107 | 2 | 156 | 305 | 426 | 613 | 1.81e-13 | 73.6 |
| MS.gene040731.t1 | AT4G15090 | 22.872 | 188 | 107 | 2 | 156 | 305 | 426 | 613 | 1.81e-13 | 73.6 |
| MS.gene040731.t1 | AT4G15090 | 22.872 | 188 | 107 | 2 | 156 | 305 | 426 | 613 | 1.81e-13 | 73.6 |
| MS.gene040731.t1 | AT3G06250 | 31.092 | 119 | 81 | 1 | 225 | 342 | 627 | 745 | 1.09e-12 | 70.9 |
| MS.gene040731.t1 | AT3G06250 | 36.111 | 108 | 53 | 3 | 5 | 110 | 23 | 116 | 9.80e-12 | 67.8 |
| MS.gene040731.t1 | AT3G06250 | 31.092 | 119 | 81 | 1 | 225 | 342 | 627 | 745 | 1.09e-12 | 70.9 |
| MS.gene040731.t1 | AT3G06250 | 36.111 | 108 | 53 | 3 | 5 | 110 | 23 | 116 | 9.80e-12 | 67.8 |
| MS.gene040731.t1 | AT3G06250 | 31.092 | 119 | 81 | 1 | 225 | 342 | 627 | 745 | 1.09e-12 | 70.9 |
| MS.gene040731.t1 | AT3G06250 | 36.111 | 108 | 53 | 3 | 5 | 110 | 23 | 116 | 9.80e-12 | 67.8 |
| MS.gene040731.t1 | AT5G18960 | 36.842 | 114 | 52 | 4 | 9 | 116 | 42 | 141 | 3.03e-12 | 69.3 |
| MS.gene040731.t1 | AT5G18960 | 31.092 | 119 | 81 | 1 | 225 | 342 | 651 | 769 | 3.39e-12 | 69.3 |
| MS.gene040731.t1 | AT5G18960 | 36.842 | 114 | 52 | 4 | 9 | 116 | 42 | 141 | 3.03e-12 | 69.3 |
| MS.gene040731.t1 | AT5G18960 | 31.092 | 119 | 81 | 1 | 225 | 342 | 651 | 769 | 3.39e-12 | 69.3 |
| MS.gene040731.t1 | AT1G76320 | 25.143 | 175 | 95 | 2 | 163 | 301 | 370 | 544 | 1.15e-11 | 67.4 |
| MS.gene040731.t1 | AT1G76320 | 25.143 | 175 | 95 | 2 | 163 | 301 | 370 | 544 | 1.15e-11 | 67.4 |
| MS.gene040731.t1 | AT1G76320 | 25.143 | 175 | 95 | 2 | 163 | 301 | 370 | 544 | 1.16e-11 | 67.4 |
| MS.gene040731.t1 | AT1G76320 | 25.143 | 175 | 95 | 2 | 163 | 301 | 370 | 544 | 1.46e-11 | 67.0 |
| MS.gene040731.t1 | AT3G07500 | 42.308 | 104 | 57 | 3 | 9 | 110 | 32 | 134 | 3.07e-11 | 63.5 |
Find 91 sgRNAs with CRISPR-Local
Find 171 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGGAAGAGGCTAGTAAATTT+TGG | 0.221773 | 1.2:-34996528 | MS.gene040731:CDS |
| CAAAATGGTTGAAGAATTCT+AGG | 0.231129 | 1.2:+34995315 | None:intergenic |
| ACATCCGAACTCACAATTTC+TGG | 0.251631 | 1.2:+34994654 | None:intergenic |
| TCAAATCCCATTCCAATCTT+TGG | 0.252212 | 1.2:+34996556 | None:intergenic |
| CCTCAACAACTATTTCAAAA+TGG | 0.253372 | 1.2:+34995300 | None:intergenic |
| TGTAGGAAGTTTGATACTTT+TGG | 0.276531 | 1.2:-34995002 | MS.gene040731:CDS |
| TGGCTAATGACTCTGGATTA+AGG | 0.307325 | 1.2:-34996180 | MS.gene040731:CDS |
| TTATGCAAGCAAAGGGGTTC+AGG | 0.309393 | 1.2:-34994632 | MS.gene040731:CDS |
| TTGTTATTAATGTAGGCAAT+AGG | 0.319287 | 1.2:-34994215 | MS.gene040731:intron |
| TGGAATGGGATTTGATTCTA+TGG | 0.332757 | 1.2:-34996548 | MS.gene040731:CDS |
| TGCATTCATTCCATTCAAAT+AGG | 0.333189 | 1.2:+34994184 | None:intergenic |
| TCGCTTAATTCTCTTTGAAC+CGG | 0.337380 | 1.2:+34994602 | None:intergenic |
| TGTTATTAATGTAGGCAATA+GGG | 0.344986 | 1.2:-34994214 | MS.gene040731:intron |
| TGGCTCAAGTTTCTTGATAA+TGG | 0.349009 | 1.2:-34994753 | MS.gene040731:CDS |
| ATTCGATTTCTAGACAAGTT+AGG | 0.350154 | 1.2:+34994837 | None:intergenic |
| AACTTGAGCCATTCTTCCTT+GGG | 0.383639 | 1.2:+34994765 | None:intergenic |
| AAACTTGAGCCATTCTTCCT+TGG | 0.386061 | 1.2:+34994764 | None:intergenic |
| TCTCTGAAATTTGTAGATCA+TGG | 0.390016 | 1.2:+34996263 | None:intergenic |
| TGACATGTTCAAGAAAATAA+TGG | 0.392454 | 1.2:-34994724 | MS.gene040731:CDS |
| ATCTTGCACAACGCCATAAC+GGG | 0.394237 | 1.2:+34994887 | None:intergenic |
| ATGTCGATTGGTTTGTTGTA+AGG | 0.397901 | 1.2:-34996428 | MS.gene040731:CDS |
| GCAAGCATATGAGATTGATT+TGG | 0.403796 | 1.2:-34996200 | MS.gene040731:CDS |
| TATAGTTTCCGTATGGGCTT+CGG | 0.405685 | 1.2:-34996499 | MS.gene040731:CDS |
| ATGGACAATAACGGTGATAA+TGG | 0.410451 | 1.2:-34994684 | MS.gene040731:CDS |
| TTTAGGGGAAAGGAGGTTGA+AGG | 0.413102 | 1.2:-34994864 | MS.gene040731:CDS |
| AGTCCATCACTTGTAGTTGT+AGG | 0.414269 | 1.2:-34995019 | MS.gene040731:CDS |
| ATTACACTTTCTCGTAAGAA+TGG | 0.418220 | 1.2:-34996322 | MS.gene040731:CDS |
| ACATAATCATAATAGGTTGA+TGG | 0.426376 | 1.2:-34994388 | MS.gene040731:intron |
| ATTGATTTGGCTAATGACTC+TGG | 0.429637 | 1.2:-34996187 | MS.gene040731:CDS |
| CTTGATCCTCATGTACTTGT+GGG | 0.429692 | 1.2:+34994332 | None:intergenic |
| TGGCATCTTCAGATGATGAT+TGG | 0.443033 | 1.2:-34996582 | MS.gene040731:CDS |
| GATGATTGGAAACCAAAGAT+TGG | 0.443445 | 1.2:-34996568 | MS.gene040731:CDS |
| TGGAAACCAAAGATTGGAAT+GGG | 0.444346 | 1.2:-34996562 | MS.gene040731:CDS |
| CTCTAACTCCGAAGCCCATA+CGG | 0.445217 | 1.2:+34996491 | None:intergenic |
| GCTTGCTTATAGTTTCCGTA+TGG | 0.448607 | 1.2:-34996506 | MS.gene040731:CDS |
| CGCTTAATTCTCTTTGAACC+GGG | 0.451079 | 1.2:+34994603 | None:intergenic |
| AGGCAAAACATGAAGGATCT+TGG | 0.451476 | 1.2:-34995067 | MS.gene040731:CDS |
| TAAGCGACACAAAAGTTGTC+TGG | 0.459328 | 1.2:-34994586 | MS.gene040731:CDS |
| TTCATTCCATTCAAATAGGC+TGG | 0.465343 | 1.2:+34994188 | None:intergenic |
| TCGCCCAGAAATTGTGAGTT+CGG | 0.475452 | 1.2:-34994658 | MS.gene040731:CDS |
| CATCCGAACTCACAATTTCT+GGG | 0.475953 | 1.2:+34994655 | None:intergenic |
| TTCTCGTAAGAATGGAAAGT+TGG | 0.483302 | 1.2:-34996314 | MS.gene040731:CDS |
| CAGAGACAACACACATGCTT+CGG | 0.486204 | 1.2:-34996246 | MS.gene040731:CDS |
| TTGAATGGAATGAATGCATA+GGG | 0.487076 | 1.2:-34994179 | None:intergenic |
| CAATTACACAGCCATGCTAA+TGG | 0.488206 | 1.2:-34994308 | MS.gene040731:intron |
| ACTTGATCCTCATGTACTTG+TGG | 0.494055 | 1.2:+34994331 | None:intergenic |
| GGGATTTGATTCTATGGAAG+AGG | 0.495105 | 1.2:-34996542 | MS.gene040731:CDS |
| TGGACAAGAGAAGCCCGTTA+TGG | 0.496786 | 1.2:-34994900 | MS.gene040731:CDS |
| TCGGATGTTATGCAAGCAAA+GGG | 0.497034 | 1.2:-34994639 | MS.gene040731:CDS |
| AATCTTGCACAACGCCATAA+CGG | 0.497648 | 1.2:+34994886 | None:intergenic |
| GGAACTTCGCACACAAGCTA+TGG | 0.502466 | 1.2:-34994703 | MS.gene040731:CDS |
| CGATTGGTTTGTTGTAAGGA+AGG | 0.503555 | 1.2:-34996424 | MS.gene040731:CDS |
| GTTATTAATGTAGGCAATAG+GGG | 0.504103 | 1.2:-34994213 | MS.gene040731:intron |
| AAGCATCACCCAAGGAAGAA+TGG | 0.505676 | 1.2:-34994773 | MS.gene040731:CDS |
| GAGAAAAGATATGCATATGA+AGG | 0.510112 | 1.2:-34996388 | MS.gene040731:CDS |
| TATGTTTGTCTTCAAAGTCA+TGG | 0.512296 | 1.2:+34996287 | None:intergenic |
| CTTGCTTATAGTTTCCGTAT+GGG | 0.515014 | 1.2:-34996505 | MS.gene040731:CDS |
| AATTCTAGGATATTCACATT+CGG | 0.515042 | 1.2:+34995329 | None:intergenic |
| GTTGTAAGGAAGGGCTAAAG+AGG | 0.520871 | 1.2:-34996414 | MS.gene040731:CDS |
| CAACTTATGAGCACACAAGC+AGG | 0.527478 | 1.2:-34996142 | MS.gene040731:CDS |
| TATGCAAGCAAAGGGGTTCA+GGG | 0.531086 | 1.2:-34994631 | MS.gene040731:CDS |
| TTGGAAACCAAAGATTGGAA+TGG | 0.532585 | 1.2:-34996563 | MS.gene040731:CDS |
| CTTCCTACAACTACAAGTGA+TGG | 0.535882 | 1.2:+34995016 | None:intergenic |
| AATCCTCACATAAGCTTGCA+AGG | 0.553450 | 1.2:-34995244 | MS.gene040731:intron |
| TAGTGTATCGTCATGTCGAT+TGG | 0.553968 | 1.2:-34996440 | MS.gene040731:CDS |
| GAGAAAGTGTAATTCTTGCA+AGG | 0.558104 | 1.2:+34996332 | None:intergenic |
| TTTGAATGGAATGAATGCAT+AGG | 0.559346 | 1.2:-34994180 | None:intergenic |
| TTCGGATGTTATGCAAGCAA+AGG | 0.563515 | 1.2:-34994640 | MS.gene040731:CDS |
| TGTCTCTAAGTTCATTAAAG+CGG | 0.564647 | 1.2:-34994802 | MS.gene040731:CDS |
| ATGAAGGGAGTGTTAACACT+TGG | 0.569898 | 1.2:-34995410 | MS.gene040731:intron |
| TTATTAATGTAGGCAATAGG+GGG | 0.573008 | 1.2:-34994212 | MS.gene040731:intron |
| ATCACTGAGGCAAAACATGA+AGG | 0.573756 | 1.2:-34995074 | MS.gene040731:CDS |
| GATTGGTTTGTTGTAAGGAA+GGG | 0.585108 | 1.2:-34996423 | MS.gene040731:CDS |
| GCAGGGCATAGAGCTAATGT+TGG | 0.587433 | 1.2:-34996124 | MS.gene040731:CDS |
| TTGATCCTCATGTACTTGTG+GGG | 0.588928 | 1.2:+34994333 | None:intergenic |
| AAGGCAATTTGTTCTAACAT+CGG | 0.596957 | 1.2:+34996351 | None:intergenic |
| ACACAAGCTATGGACAATAA+CGG | 0.597819 | 1.2:-34994693 | MS.gene040731:CDS |
| AACTTATGAGCACACAAGCA+GGG | 0.601558 | 1.2:-34996141 | MS.gene040731:CDS |
| TGATCCTCATGTACTTGTGG+GGG | 0.607203 | 1.2:+34994334 | None:intergenic |
| GTTTGAATTGAATGATGTGA+AGG | 0.620015 | 1.2:-34994952 | MS.gene040731:CDS |
| TAAGGAAGGGCTAAAGAGGA+CGG | 0.628899 | 1.2:-34996410 | MS.gene040731:CDS |
| GGCAACTGAAGCATCACCCA+AGG | 0.632035 | 1.2:-34994781 | MS.gene040731:CDS |
| AAGGGGTTCAGGGTACGACC+CGG | 0.640993 | 1.2:-34994621 | MS.gene040731:CDS |
| AGCTAATGTTGGATTTACAG+AGG | 0.647899 | 1.2:-34996113 | MS.gene040731:CDS |
| TAACCTTGCAAGCTTATGTG+AGG | 0.649097 | 1.2:+34995241 | None:intergenic |
| TAATGTTGGATTTACAGAGG+TGG | 0.664199 | 1.2:-34996110 | MS.gene040731:CDS |
| TGAATGGAATGAATGCATAG+GGG | 0.681201 | 1.2:-34994178 | None:intergenic |
| TATTAATGTAGGCAATAGGG+GGG | 0.692237 | 1.2:-34994211 | MS.gene040731:intron |
| CGGATGTTATGCAAGCAAAG+GGG | 0.705294 | 1.2:-34994638 | MS.gene040731:CDS |
| AAGTGATGGACTTTGAAACA+CGG | 0.722571 | 1.2:+34995030 | None:intergenic |
| TTGTGAATATGTCATCACTG+AGG | 0.762460 | 1.2:-34995087 | MS.gene040731:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTTCAAAAACAAATTCATA+AGG | - | chr1.2:34996481-34996500 | MS.gene040731:CDS | 15.0% |
| !! | TAATTTGACATAATCATAAT+AGG | - | chr1.2:34996369-34996388 | MS.gene040731:CDS | 15.0% |
| !! | TTATGAGCTTAAAAAAAAAT+GGG | - | chr1.2:34995320-34995339 | MS.gene040731:CDS | 15.0% |
| !!! | ATAACTATATTTTAAAAAGG+TGG | - | chr1.2:34995844-34995863 | MS.gene040731:intron | 15.0% |
| !!! | CTGATAACTATATTTTAAAA+AGG | - | chr1.2:34995841-34995860 | MS.gene040731:intron | 15.0% |
| !!! | CTTTTTAAAATATAGTTATC+AGG | + | chr1.2:34995843-34995862 | None:intergenic | 15.0% |
| !!! | TGTTTTAATTTTACTTGTTT+TGG | - | chr1.2:34996286-34996305 | MS.gene040731:CDS | 15.0% |
| !!! | TTTTAAGTTGTTATTAATGT+AGG | - | chr1.2:34996542-34996561 | MS.gene040731:CDS | 15.0% |
| !! | CTTATGAGCTTAAAAAAAAA+TGG | - | chr1.2:34995319-34995338 | MS.gene040731:CDS | 20.0% |
| !! | TGTCATGAATATTAAATTTG+TGG | + | chr1.2:34995281-34995300 | None:intergenic | 20.0% |
| !! | TTAATATTCATGACAAATCT+TGG | - | chr1.2:34995286-34995305 | MS.gene040731:CDS | 20.0% |
| !! | TTCGTAAACAAAAAAAAAGA+TGG | - | chr1.2:34994301-34994320 | MS.gene040731:intron | 20.0% |
| !!! | AACATATTACAAATGTGTTT+TGG | - | chr1.2:34994812-34994831 | MS.gene040731:CDS | 20.0% |
| ! | AAAATGGAGTTAAACATCTT+GGG | - | chr1.2:34995154-34995173 | MS.gene040731:intron | 25.0% |
| ! | CTAACATACATGTAAAATCA+TGG | + | chr1.2:34996344-34996363 | None:intergenic | 25.0% |
| ! | TGAAAGAAGAAAAAGAAGTA+TGG | - | chr1.2:34994696-34994715 | MS.gene040731:CDS | 25.0% |
| ! | TGACATGTTCAAGAAAATAA+TGG | - | chr1.2:34996040-34996059 | MS.gene040731:intron | 25.0% |
| ! | TGTTATTAATGTAGGCAATA+GGG | - | chr1.2:34996550-34996569 | MS.gene040731:CDS | 25.0% |
| ! | TTTCCCATTTGAATTAGTAT+TGG | + | chr1.2:34995564-34995583 | None:intergenic | 25.0% |
| !! | ACATAATCATAATAGGTTGA+TGG | - | chr1.2:34996376-34996395 | MS.gene040731:CDS | 25.0% |
| !! | TTGTTATTAATGTAGGCAAT+AGG | - | chr1.2:34996549-34996568 | MS.gene040731:CDS | 25.0% |
| !!! | AATTCTAGGATATTCACATT+CGG | + | chr1.2:34995438-34995457 | None:intergenic | 25.0% |
| !!! | TTTTGAAATTACCATTAGCA+TGG | + | chr1.2:34996470-34996489 | None:intergenic | 25.0% |
| AAACCAGAAAAAAAAGCAAG+TGG | + | chr1.2:34994925-34994944 | None:intergenic | 30.0% | |
| ACCTAAAGAAAAAAGTTCAC+AGG | - | chr1.2:34996238-34996257 | MS.gene040731:CDS | 30.0% | |
| ATAGAGGTTCAGTCATATTT+GGG | - | chr1.2:34994953-34994972 | MS.gene040731:CDS | 30.0% | |
| ATATGACTGAACCTCTATAA+TGG | + | chr1.2:34994951-34994970 | None:intergenic | 30.0% | |
| ATTACACTTTCTCGTAAGAA+TGG | - | chr1.2:34994442-34994461 | MS.gene040731:intron | 30.0% | |
| CAAAATGGAGTTAAACATCT+TGG | - | chr1.2:34995153-34995172 | MS.gene040731:intron | 30.0% | |
| CAAAATGGTTGAAGAATTCT+AGG | + | chr1.2:34995452-34995471 | None:intergenic | 30.0% | |
| CCTCAACAACTATTTCAAAA+TGG | + | chr1.2:34995467-34995486 | None:intergenic | 30.0% | |
| GAGAAAAGATATGCATATGA+AGG | - | chr1.2:34994376-34994395 | MS.gene040731:CDS | 30.0% | |
| GCACCAATACTAATTCAAAT+GGG | - | chr1.2:34995558-34995577 | MS.gene040731:intron | 30.0% | |
| GTTATTAATGTAGGCAATAG+GGG | - | chr1.2:34996551-34996570 | MS.gene040731:CDS | 30.0% | |
| GTTGTTTGATACATTCTTAC+AGG | - | chr1.2:34995017-34995036 | MS.gene040731:CDS | 30.0% | |
| GTTTGAATTGAATGATGTGA+AGG | - | chr1.2:34995812-34995831 | MS.gene040731:intron | 30.0% | |
| TATAGAGGTTCAGTCATATT+TGG | - | chr1.2:34994952-34994971 | MS.gene040731:CDS | 30.0% | |
| TATGTTTGTCTTCAAAGTCA+TGG | + | chr1.2:34994480-34994499 | None:intergenic | 30.0% | |
| TGCACCAATACTAATTCAAA+TGG | - | chr1.2:34995557-34995576 | MS.gene040731:intron | 30.0% | |
| TGCATTCATTCCATTCAAAT+AGG | + | chr1.2:34996583-34996602 | None:intergenic | 30.0% | |
| TGTCTCTAAGTTCATTAAAG+CGG | - | chr1.2:34995962-34995981 | MS.gene040731:intron | 30.0% | |
| TTATTAATGTAGGCAATAGG+GGG | - | chr1.2:34996552-34996571 | MS.gene040731:CDS | 30.0% | |
| ! | AAGGCAATTTGTTCTAACAT+CGG | + | chr1.2:34994416-34994435 | None:intergenic | 30.0% |
| ! | ACATGGCATTTGTTACAAAA+TGG | - | chr1.2:34995138-34995157 | MS.gene040731:intron | 30.0% |
| ! | AGAAAAAGAAGTATGGTGTA+TGG | - | chr1.2:34994703-34994722 | MS.gene040731:CDS | 30.0% |
| ! | ATTCGATTTCTAGACAAGTT+AGG | + | chr1.2:34995930-34995949 | None:intergenic | 30.0% |
| ! | ATTTTGGATTACGGGTATTT+TGG | - | chr1.2:34994850-34994869 | MS.gene040731:CDS | 30.0% |
| ! | CATACATTTAACAAGTATCG+TGG | - | chr1.2:34996511-34996530 | MS.gene040731:CDS | 30.0% |
| ! | GTATTTTCAACGACAATTGT+TGG | - | chr1.2:34994747-34994766 | MS.gene040731:CDS | 30.0% |
| ! | TGTAGGAAGTTTGATACTTT+TGG | - | chr1.2:34995762-34995781 | MS.gene040731:intron | 30.0% |
| !! | TCTCTGAAATTTGTAGATCA+TGG | + | chr1.2:34994504-34994523 | None:intergenic | 30.0% |
| !!! | AAGCAGATTTTGAGATACTT+TGG | - | chr1.2:34995244-34995263 | MS.gene040731:intron | 30.0% |
| !!! | ACCTGTGAACTTTTTTCTTT+AGG | + | chr1.2:34996242-34996261 | None:intergenic | 30.0% |
| !!! | CCATTTTGAAATAGTTGTTG+AGG | - | chr1.2:34995464-34995483 | MS.gene040731:intron | 30.0% |
| !!! | TGTGAACTTTTTTCTTTAGG+TGG | + | chr1.2:34996239-34996258 | None:intergenic | 30.0% |
| AAAAAAAGCAAGTGGCCTAT+TGG | + | chr1.2:34994917-34994936 | None:intergenic | 35.0% | |
| AAGTTCACAGGTATATGAGT+TGG | - | chr1.2:34996250-34996269 | MS.gene040731:CDS | 35.0% | |
| ACACAAGCTATGGACAATAA+CGG | - | chr1.2:34996071-34996090 | MS.gene040731:intron | 35.0% | |
| AGACAAGTGAGTCATTTAGA+TGG | - | chr1.2:34994995-34995014 | MS.gene040731:CDS | 35.0% | |
| AGCTAATGTTGGATTTACAG+AGG | - | chr1.2:34994651-34994670 | MS.gene040731:CDS | 35.0% | |
| ATGGACAATAACGGTGATAA+TGG | - | chr1.2:34996080-34996099 | MS.gene040731:intron | 35.0% | |
| CATCTGATATGCATGAAAGA+AGG | + | chr1.2:34994782-34994801 | None:intergenic | 35.0% | |
| CTTCTTTCATGCATATCAGA+TGG | - | chr1.2:34994780-34994799 | MS.gene040731:CDS | 35.0% | |
| CTTGCTTATAGTTTCCGTAT+GGG | - | chr1.2:34994259-34994278 | MS.gene040731:intron | 35.0% | |
| GAGTCAGATTCATGTCTAAT+TGG | + | chr1.2:34995654-34995673 | None:intergenic | 35.0% | |
| GATGATTGGAAACCAAAGAT+TGG | - | chr1.2:34994196-34994215 | MS.gene040731:CDS | 35.0% | |
| GCAAGCATATGAGATTGATT+TGG | - | chr1.2:34994564-34994583 | MS.gene040731:CDS | 35.0% | |
| TAATGTTGGATTTACAGAGG+TGG | - | chr1.2:34994654-34994673 | MS.gene040731:CDS | 35.0% | |
| TAGAGGTTCAGTCATATTTG+GGG | - | chr1.2:34994954-34994973 | MS.gene040731:CDS | 35.0% | |
| TATTAATGTAGGCAATAGGG+GGG | - | chr1.2:34996553-34996572 | MS.gene040731:CDS | 35.0% | |
| TCAAATCCCATTCCAATCTT+TGG | + | chr1.2:34994211-34994230 | None:intergenic | 35.0% | |
| TCGCTTAATTCTCTTTGAAC+CGG | + | chr1.2:34996165-34996184 | None:intergenic | 35.0% | |
| TGATATGCATGAAAGAAGGA+TGG | + | chr1.2:34994778-34994797 | None:intergenic | 35.0% | |
| TGGAAACCAAAGATTGGAAT+GGG | - | chr1.2:34994202-34994221 | MS.gene040731:CDS | 35.0% | |
| TGGAATGGGATTTGATTCTA+TGG | - | chr1.2:34994216-34994235 | MS.gene040731:intron | 35.0% | |
| TGGCTCAAGTTTCTTGATAA+TGG | - | chr1.2:34996011-34996030 | MS.gene040731:intron | 35.0% | |
| TTCATTCCATTCAAATAGGC+TGG | + | chr1.2:34996579-34996598 | None:intergenic | 35.0% | |
| TTCTCGTAAGAATGGAAAGT+TGG | - | chr1.2:34994450-34994469 | MS.gene040731:intron | 35.0% | |
| TTGGAAACCAAAGATTGGAA+TGG | - | chr1.2:34994201-34994220 | MS.gene040731:CDS | 35.0% | |
| TTGTGAATATGTCATCACTG+AGG | - | chr1.2:34995677-34995696 | MS.gene040731:intron | 35.0% | |
| ! | CACAGATGATTTTGGATTAC+GGG | - | chr1.2:34994842-34994861 | MS.gene040731:CDS | 35.0% |
| ! | GAGAAAGTGTAATTCTTGCA+AGG | + | chr1.2:34994435-34994454 | None:intergenic | 35.0% |
| ! | GCACAGATGATTTTGGATTA+CGG | - | chr1.2:34994841-34994860 | MS.gene040731:CDS | 35.0% |
| ! | TCTGGTTTCAACCATTATAG+AGG | - | chr1.2:34994937-34994956 | MS.gene040731:CDS | 35.0% |
| ! | TGGAAGAGGCTAGTAAATTT+TGG | - | chr1.2:34994236-34994255 | MS.gene040731:intron | 35.0% |
| !! | AAGTGATGGACTTTGAAACA+CGG | + | chr1.2:34995737-34995756 | None:intergenic | 35.0% |
| !! | ATGTCGATTGGTTTGTTGTA+AGG | - | chr1.2:34994336-34994355 | MS.gene040731:CDS | 35.0% |
| !! | ATTGATTTGGCTAATGACTC+TGG | - | chr1.2:34994577-34994596 | MS.gene040731:CDS | 35.0% |
| !! | GATTGGTTTGTTGTAAGGAA+GGG | - | chr1.2:34994341-34994360 | MS.gene040731:CDS | 35.0% |
| !!! | TTTTGGCGATGTTGTTTCTT+TGG | - | chr1.2:34994867-34994886 | MS.gene040731:CDS | 35.0% |
| AAACTTGAGCCATTCTTCCT+TGG | + | chr1.2:34996003-34996022 | None:intergenic | 40.0% | |
| AACTTATGAGCACACAAGCA+GGG | - | chr1.2:34994623-34994642 | MS.gene040731:CDS | 40.0% | |
| AACTTGAGCCATTCTTCCTT+GGG | + | chr1.2:34996002-34996021 | None:intergenic | 40.0% | |
| AATCCTCACATAAGCTTGCA+AGG | - | chr1.2:34995520-34995539 | MS.gene040731:intron | 40.0% | |
| AATCTTGCACAACGCCATAA+CGG | + | chr1.2:34995881-34995900 | None:intergenic | 40.0% | |
| ACATCCGAACTCACAATTTC+TGG | + | chr1.2:34996113-34996132 | None:intergenic | 40.0% | |
| ACATCTTGGGAACTTGATGA+CGG | - | chr1.2:34995167-34995186 | MS.gene040731:intron | 40.0% | |
| ACTTGATCCTCATGTACTTG+TGG | + | chr1.2:34996436-34996455 | None:intergenic | 40.0% | |
| AGGCAAAACATGAAGGATCT+TGG | - | chr1.2:34995697-34995716 | MS.gene040731:intron | 40.0% | |
| AGTATGGTGTATGGTGAGAT+TGG | - | chr1.2:34994712-34994731 | MS.gene040731:CDS | 40.0% | |
| AGTCCATCACTTGTAGTTGT+AGG | - | chr1.2:34995745-34995764 | MS.gene040731:intron | 40.0% | |
| ATCACTGAGGCAAAACATGA+AGG | - | chr1.2:34995690-34995709 | MS.gene040731:intron | 40.0% | |
| CAATTACACAGCCATGCTAA+TGG | - | chr1.2:34996456-34996475 | MS.gene040731:CDS | 40.0% | |
| CATAAACCATGATGAGTCTC+GGG | + | chr1.2:34995117-34995136 | None:intergenic | 40.0% | |
| CATCCGAACTCACAATTTCT+GGG | + | chr1.2:34996112-34996131 | None:intergenic | 40.0% | |
| CGCTTAATTCTCTTTGAACC+GGG | + | chr1.2:34996164-34996183 | None:intergenic | 40.0% | |
| CTCATCATGGTTTATGCACA+TGG | - | chr1.2:34995121-34995140 | MS.gene040731:intron | 40.0% | |
| CTTCCTACAACTACAAGTGA+TGG | + | chr1.2:34995751-34995770 | None:intergenic | 40.0% | |
| CTTGATCCTCATGTACTTGT+GGG | + | chr1.2:34996435-34996454 | None:intergenic | 40.0% | |
| GCATAAACCATGATGAGTCT+CGG | + | chr1.2:34995118-34995137 | None:intergenic | 40.0% | |
| GCTTGCTTATAGTTTCCGTA+TGG | - | chr1.2:34994258-34994277 | MS.gene040731:intron | 40.0% | |
| GGGATTTGATTCTATGGAAG+AGG | - | chr1.2:34994222-34994241 | MS.gene040731:intron | 40.0% | |
| TAACCTTGCAAGCTTATGTG+AGG | + | chr1.2:34995526-34995545 | None:intergenic | 40.0% | |
| TAAGCGACACAAAAGTTGTC+TGG | - | chr1.2:34996178-34996197 | MS.gene040731:CDS | 40.0% | |
| TAGTGTATCGTCATGTCGAT+TGG | - | chr1.2:34994324-34994343 | MS.gene040731:CDS | 40.0% | |
| TATAGTTTCCGTATGGGCTT+CGG | - | chr1.2:34994265-34994284 | MS.gene040731:intron | 40.0% | |
| TCATGGCAGTAGCAGAAAAT+AGG | + | chr1.2:34996327-34996346 | None:intergenic | 40.0% | |
| TCGGATGTTATGCAAGCAAA+GGG | - | chr1.2:34996125-34996144 | MS.gene040731:CDS | 40.0% | |
| TGGCATCTTCAGATGATGAT+TGG | - | chr1.2:34994182-34994201 | MS.gene040731:CDS | 40.0% | |
| TGGCTAATGACTCTGGATTA+AGG | - | chr1.2:34994584-34994603 | MS.gene040731:CDS | 40.0% | |
| TGGGCTGCATGTTATATGAA+GGG | - | chr1.2:34995339-34995358 | MS.gene040731:CDS | 40.0% | |
| TTCGGATGTTATGCAAGCAA+AGG | - | chr1.2:34996124-34996143 | MS.gene040731:CDS | 40.0% | |
| TTGATCCTCATGTACTTGTG+GGG | + | chr1.2:34996434-34996453 | None:intergenic | 40.0% | |
| ! | ATGGCGTTGTGCAAGATTTT+AGG | - | chr1.2:34995883-34995902 | MS.gene040731:intron | 40.0% |
| ! | ATGGGCTGCATGTTATATGA+AGG | - | chr1.2:34995338-34995357 | MS.gene040731:CDS | 40.0% |
| ! | GTGTGATGCACAGATGATTT+TGG | - | chr1.2:34994834-34994853 | MS.gene040731:CDS | 40.0% |
| ! | TGGCGTTGTGCAAGATTTTA+GGG | - | chr1.2:34995884-34995903 | MS.gene040731:intron | 40.0% |
| !! | ATGAAGGGAGTGTTAACACT+TGG | - | chr1.2:34995354-34995373 | MS.gene040731:CDS | 40.0% |
| !! | CGATTGGTTTGTTGTAAGGA+AGG | - | chr1.2:34994340-34994359 | MS.gene040731:CDS | 40.0% |
| !! | TGTGCAAGATTTTAGGGGAA+AGG | - | chr1.2:34995890-34995909 | MS.gene040731:intron | 40.0% |
| !!! | AGGCCACTTGCTTTTTTTTC+TGG | - | chr1.2:34994919-34994938 | MS.gene040731:CDS | 40.0% |
| !!! | TTTTTTCTTTAGGTGGAGCG+CGG | + | chr1.2:34996232-34996251 | None:intergenic | 40.0% |
| AAGCATCACCCAAGGAAGAA+TGG | - | chr1.2:34995991-34996010 | MS.gene040731:intron | 45.0% | |
| ACCAAGATCAAGCAATGGCA+AGG | - | chr1.2:34995073-34995092 | MS.gene040731:CDS | 45.0% | |
| ACTGTACCAACCATGCCAAT+AGG | - | chr1.2:34994899-34994918 | MS.gene040731:CDS | 45.0% | |
| AGGTTCAGTCATATTTGGGG+CGG | - | chr1.2:34994957-34994976 | MS.gene040731:CDS | 45.0% | |
| ATCTTGCACAACGCCATAAC+GGG | + | chr1.2:34995880-34995899 | None:intergenic | 45.0% | |
| CAACTTATGAGCACACAAGC+AGG | - | chr1.2:34994622-34994641 | MS.gene040731:CDS | 45.0% | |
| CACTGACCAAGATCAAGCAA+TGG | - | chr1.2:34995068-34995087 | MS.gene040731:CDS | 45.0% | |
| CAGAGACAACACACATGCTT+CGG | - | chr1.2:34994518-34994537 | MS.gene040731:intron | 45.0% | |
| CCAAGATCAAGCAATGGCAA+GGG | - | chr1.2:34995074-34995093 | MS.gene040731:CDS | 45.0% | |
| CGGATGTTATGCAAGCAAAG+GGG | - | chr1.2:34996126-34996145 | MS.gene040731:CDS | 45.0% | |
| GTAGCAGAAAATAGGTGGAC+TGG | + | chr1.2:34996319-34996338 | None:intergenic | 45.0% | |
| GTTGTAAGGAAGGGCTAAAG+AGG | - | chr1.2:34994350-34994369 | MS.gene040731:CDS | 45.0% | |
| TAAGGAAGGGCTAAAGAGGA+CGG | - | chr1.2:34994354-34994373 | MS.gene040731:CDS | 45.0% | |
| TATGCAAGCAAAGGGGTTCA+GGG | - | chr1.2:34996133-34996152 | MS.gene040731:CDS | 45.0% | |
| TCGCCCAGAAATTGTGAGTT+CGG | - | chr1.2:34996106-34996125 | MS.gene040731:intron | 45.0% | |
| TCTTGGTCAGTGATCGTCTT+TGG | + | chr1.2:34995060-34995079 | None:intergenic | 45.0% | |
| TGATCCTCATGTACTTGTGG+GGG | + | chr1.2:34996433-34996452 | None:intergenic | 45.0% | |
| TGGCAGTAGCAGAAAATAGG+TGG | + | chr1.2:34996324-34996343 | None:intergenic | 45.0% | |
| TTATGCAAGCAAAGGGGTTC+AGG | - | chr1.2:34996132-34996151 | MS.gene040731:CDS | 45.0% | |
| TTTAGGGGAAAGGAGGTTGA+AGG | - | chr1.2:34995900-34995919 | MS.gene040731:intron | 45.0% | |
| ! | CATCTTGGGAACTTGATGAC+GGG | - | chr1.2:34995168-34995187 | MS.gene040731:intron | 45.0% |
| ! | GGCGTTGTGCAAGATTTTAG+GGG | - | chr1.2:34995885-34995904 | MS.gene040731:intron | 45.0% |
| !! | GCAAGATTTTAGGGGAAAGG+AGG | - | chr1.2:34995893-34995912 | MS.gene040731:intron | 45.0% |
| AAGCAAGTGGCCTATTGGCA+TGG | + | chr1.2:34994912-34994931 | None:intergenic | 50.0% | |
| AAGTGGCCTATTGGCATGGT+TGG | + | chr1.2:34994908-34994927 | None:intergenic | 50.0% | |
| ACTTGTGGGGGCTCATAAGT+TGG | + | chr1.2:34996421-34996440 | None:intergenic | 50.0% | |
| CCCTTGCCATTGCTTGATCT+TGG | + | chr1.2:34995077-34995096 | None:intergenic | 50.0% | |
| CTCTAACTCCGAAGCCCATA+CGG | + | chr1.2:34994276-34994295 | None:intergenic | 50.0% | |
| GCAGGGCATAGAGCTAATGT+TGG | - | chr1.2:34994640-34994659 | MS.gene040731:CDS | 50.0% | |
| GGAACTTCGCACACAAGCTA+TGG | - | chr1.2:34996061-34996080 | MS.gene040731:intron | 50.0% | |
| TGGACAAGAGAAGCCCGTTA+TGG | - | chr1.2:34995864-34995883 | MS.gene040731:intron | 50.0% | |
| GTGATGCCCGAGACTCATCA+TGG | - | chr1.2:34995108-34995127 | MS.gene040731:CDS | 55.0% | |
| TGAGCCCCCACAAGTACATG+AGG | - | chr1.2:34996426-34996445 | MS.gene040731:CDS | 55.0% | |
| ! | GGCAACTGAAGCATCACCCA+AGG | - | chr1.2:34995983-34996002 | MS.gene040731:intron | 55.0% |
| ! | GGCATGGTTGGTACAGTACG+TGG | + | chr1.2:34994896-34994915 | None:intergenic | 55.0% |
| ! | TGTGGGGGCTCATAAGTTGG+AGG | + | chr1.2:34996418-34996437 | None:intergenic | 55.0% |
| !! | CTTGGGAACTTGATGACGGG+AGG | - | chr1.2:34995171-34995190 | MS.gene040731:intron | 55.0% |
| AAGGGGTTCAGGGTACGACC+CGG | - | chr1.2:34996143-34996162 | MS.gene040731:CDS | 60.0% | |
| GGGGGGCCAGCCTATTTGAA+TGG | - | chr1.2:34996570-34996589 | MS.gene040731:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.2 | gene | 34994181 | 34996605 | 34994181 | ID=MS.gene040731 |
| chr1.2 | mRNA | 34994181 | 34996605 | 34994181 | ID=MS.gene040731.t1;Parent=MS.gene040731 |
| chr1.2 | exon | 34996108 | 34996605 | 34996108 | ID=MS.gene040731.t1.exon1;Parent=MS.gene040731.t1 |
| chr1.2 | CDS | 34996108 | 34996605 | 34996108 | ID=cds.MS.gene040731.t1;Parent=MS.gene040731.t1 |
| chr1.2 | exon | 34995245 | 34995426 | 34995245 | ID=MS.gene040731.t1.exon2;Parent=MS.gene040731.t1 |
| chr1.2 | CDS | 34995245 | 34995426 | 34995245 | ID=cds.MS.gene040731.t1;Parent=MS.gene040731.t1 |
| chr1.2 | exon | 34994527 | 34995127 | 34994527 | ID=MS.gene040731.t1.exon3;Parent=MS.gene040731.t1 |
| chr1.2 | CDS | 34994527 | 34995127 | 34994527 | ID=cds.MS.gene040731.t1;Parent=MS.gene040731.t1 |
| chr1.2 | exon | 34994309 | 34994395 | 34994309 | ID=MS.gene040731.t1.exon4;Parent=MS.gene040731.t1 |
| chr1.2 | CDS | 34994309 | 34994395 | 34994309 | ID=cds.MS.gene040731.t1;Parent=MS.gene040731.t1 |
| chr1.2 | exon | 34994181 | 34994222 | 34994181 | ID=MS.gene040731.t1.exon5;Parent=MS.gene040731.t1 |
| chr1.2 | CDS | 34994181 | 34994222 | 34994181 | ID=cds.MS.gene040731.t1;Parent=MS.gene040731.t1 |
| Gene Sequence |
| Protein sequence |
