AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene040782

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene040782.t1 MTR_8g070075 88.844 735 75 2 1 734 30 758 0.0 1349
MS.gene040782.t1 MTR_8g070070 75.741 742 155 8 5 736 41 767 0.0 1109
MS.gene040782.t1 MTR_8g071030 65.981 729 197 7 13 736 65 747 0.0 957
MS.gene040782.t1 MTR_1g035420 68.644 472 144 3 266 736 189 657 0.0 689
MS.gene040782.t1 MTR_1g035400 53.391 575 207 6 157 729 53 568 0.0 602
MS.gene040782.t1 MTR_6g044690 56.809 470 180 8 266 726 109 564 0.0 540
MS.gene040782.t1 MTR_0376s0030 51.367 512 222 8 238 736 79 576 2.50e-177 520
MS.gene040782.t1 MTR_6g043960 47.885 520 221 10 219 726 1 482 1.21e-158 468
MS.gene040782.t1 MTR_2g054460 43.640 566 201 12 170 726 8 464 1.09e-139 419
MS.gene040782.t1 MTR_5g013420 40.652 460 250 8 269 724 618 1058 5.01e-107 351
MS.gene040782.t1 MTR_5g013420 40.652 460 250 8 269 724 618 1058 6.30e-107 351
MS.gene040782.t1 MTR_7g088370 40.966 476 245 13 261 726 231 680 2.09e-106 340
MS.gene040782.t1 MTR_3g011440 39.787 470 263 10 266 725 174 633 9.66e-105 335
MS.gene040782.t1 MTR_4g010830 40.830 458 251 8 269 724 510 949 1.70e-103 340
MS.gene040782.t1 MTR_8g042750 39.421 449 254 10 286 726 220 658 1.79e-99 322
MS.gene040782.t1 MTR_4g010550 37.908 459 233 11 269 724 24 433 1.67e-89 288
MS.gene040782.t1 MTR_7g084090 37.372 487 273 15 260 725 252 727 8.42e-88 292
MS.gene040782.t1 MTR_6g061270 37.553 474 264 16 272 725 203 664 6.68e-86 286
MS.gene040782.t1 MTR_6g061200 36.266 466 252 16 272 725 203 635 3.45e-78 264
MS.gene040782.t1 MTR_7g084090 39.566 369 201 12 260 615 252 611 1.15e-70 244
MS.gene040782.t1 MTR_7g445710 32.353 476 229 17 269 724 110 512 1.42e-56 202
MS.gene040782.t1 MTR_7g445530 32.143 476 230 17 269 724 110 512 2.22e-56 201
MS.gene040782.t1 MTR_1g048950 33.333 474 267 13 266 724 68 507 1.56e-55 200
MS.gene040782.t1 MTR_7g450730 30.952 462 219 14 269 724 107 474 3.81e-53 192
MS.gene040782.t1 MTR_7g052480 33.442 308 191 8 428 725 223 526 1.11e-43 166
MS.gene040782.t1 MTR_8g078505 26.426 333 192 10 423 724 205 515 4.57e-22 101
MS.gene040782.t1 MTR_7g445600 34.667 150 61 2 575 724 243 355 6.27e-22 98.6
MS.gene040782.t1 MTR_7g445600 41.085 129 62 5 269 397 106 220 1.70e-14 76.3
MS.gene040782.t1 MTR_6g044000 69.811 53 16 0 674 726 117 169 2.48e-20 89.4
MS.gene040782.t1 MTR_6g044000 47.674 86 43 1 255 338 35 120 6.67e-17 79.3
MS.gene040782.t1 MTR_8g078490 31.746 189 109 4 541 724 1056 1229 4.30e-20 96.3
MS.gene040782.t1 MTR_1g069570 26.059 307 155 12 476 726 430 720 1.01e-19 94.7
MS.gene040782.t1 MTR_5g018850 31.915 188 110 5 541 724 1310 1483 4.06e-19 93.2
MS.gene040782.t1 MTR_4g132610 30.811 185 114 4 542 724 851 1023 4.54e-19 92.8
MS.gene040782.t1 MTR_1g080340 24.756 307 160 10 476 726 269 560 1.45e-17 87.4
MS.gene040782.t1 MTR_1g069570 26.236 263 123 11 476 683 430 676 1.97e-16 84.0
MS.gene040782.t1 MTR_5g098680 35.443 158 88 4 294 446 267 415 1.09e-15 81.6
MS.gene040782.t1 MTR_8g102580 34.810 158 89 4 294 446 261 409 4.04e-15 79.7
MS.gene040782.t1 MTR_7g445810 37.037 162 79 8 269 425 123 266 1.13e-13 72.4
MS.gene040782.t1 MTR_3g114910 32.026 153 90 4 294 446 187 325 2.06e-11 67.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene040782.t1 AT4G13460 62.319 483 174 6 256 736 172 648 0.0 625
MS.gene040782.t1 AT4G13460 62.319 483 174 6 256 736 172 648 0.0 625
MS.gene040782.t1 AT2G33290 60.000 480 182 5 258 736 179 649 0.0 603
MS.gene040782.t1 AT2G33290 60.000 480 182 5 258 736 179 649 0.0 603
MS.gene040782.t1 AT2G33290 60.000 480 182 5 258 736 179 649 0.0 603
MS.gene040782.t1 AT2G33290 60.000 480 182 5 258 736 179 649 0.0 603
MS.gene040782.t1 AT1G73100 37.908 459 244 11 286 726 204 639 3.05e-94 307
MS.gene040782.t1 AT5G04940 38.998 459 237 12 286 726 207 640 1.81e-93 305
MS.gene040782.t1 AT5G04940 38.998 459 237 12 286 726 207 640 1.81e-93 305
MS.gene040782.t1 AT2G35160 38.085 470 247 10 259 724 298 727 1.96e-93 307
MS.gene040782.t1 AT2G35160 38.085 470 247 10 259 724 334 763 5.13e-93 307
MS.gene040782.t1 AT2G35160 38.085 470 247 10 259 724 334 763 5.13e-93 307
MS.gene040782.t1 AT2G35160 38.085 470 247 10 259 724 334 763 5.13e-93 307
MS.gene040782.t1 AT2G35160 38.085 470 247 10 259 724 334 763 5.13e-93 307
MS.gene040782.t1 AT2G22740 37.684 475 273 8 259 724 299 759 3.02e-92 305
MS.gene040782.t1 AT2G22740 37.684 475 273 8 259 724 299 759 3.02e-92 305
MS.gene040782.t1 AT5G13960 36.304 460 263 14 286 725 11 460 3.20e-83 273
MS.gene040782.t1 AT5G13960 36.522 460 262 15 286 725 145 594 4.84e-83 276
MS.gene040782.t1 AT2G24740 37.168 452 238 16 287 726 307 724 1.09e-71 249
MS.gene040782.t1 AT1G17770 34.056 461 262 17 286 726 223 661 2.00e-71 246
MS.gene040782.t1 AT5G47150 42.424 165 86 4 282 446 169 324 1.46e-27 114
MS.gene040782.t1 AT5G47160 40.588 170 91 5 274 442 247 407 5.62e-24 105
MS.gene040782.t1 AT5G47160 40.588 170 91 5 274 442 247 407 5.62e-24 105
MS.gene040782.t1 AT5G47160 40.588 170 91 5 274 442 247 407 5.62e-24 105
MS.gene040782.t1 AT2G23740 32.821 195 108 6 543 729 1177 1356 5.67e-23 105
MS.gene040782.t1 AT2G23740 32.821 195 108 6 543 729 1184 1363 5.99e-23 105
MS.gene040782.t1 AT2G23740 32.821 195 108 6 543 729 1184 1363 5.99e-23 105
MS.gene040782.t1 AT2G23740 32.821 195 108 6 543 729 1184 1363 5.99e-23 105
MS.gene040782.t1 AT2G05900 39.080 174 98 6 331 504 26 191 3.04e-21 95.9
MS.gene040782.t1 AT3G03750 28.169 284 146 11 474 725 66 323 1.02e-17 85.9
MS.gene040782.t1 AT2G23740 33.562 146 77 5 543 683 1184 1314 5.72e-17 86.3
MS.gene040782.t1 AT2G23740 33.562 146 77 5 543 683 1184 1314 5.72e-17 86.3
MS.gene040782.t1 AT1G57820 35.220 159 88 5 294 446 277 426 3.51e-15 80.1
MS.gene040782.t1 AT1G57820 35.220 159 88 5 294 446 277 426 3.51e-15 80.1
MS.gene040782.t1 AT1G04050 23.948 309 157 10 476 726 305 593 3.68e-14 76.6
MS.gene040782.t1 AT1G57820 34.615 156 90 5 294 446 277 423 3.68e-14 76.6
MS.gene040782.t1 AT1G04050 23.948 309 157 10 476 726 409 697 4.18e-14 76.6
MS.gene040782.t1 AT1G04050 23.948 309 157 10 476 726 409 697 4.18e-14 76.6
MS.gene040782.t1 AT1G66040 32.704 159 92 4 294 446 262 411 3.89e-13 73.2
MS.gene040782.t1 AT1G66050 32.704 159 92 4 294 446 262 411 4.47e-13 73.2
MS.gene040782.t1 AT5G39550 33.962 159 90 5 294 446 262 411 6.55e-13 72.8

Find 201 sgRNAs with CRISPR-Local

Find 240 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCTAGGGAGATTAAGAAAAT+TGG 0.151275 1.2:+36345459 MS.gene040782:CDS
GCTACTAGTGTGATTGTTTC+AGG 0.189529 1.2:+36345093 MS.gene040782:CDS
TCCTCAAAAGGTTTAGGTTT+TGG 0.199470 1.2:-36344157 None:intergenic
AAGCGGTGCTCCGGTGTAAA+TGG 0.221260 1.2:-36344119 None:intergenic
TAGGTCCTTGGATCTTATTC+AGG 0.256771 1.2:+36345878 MS.gene040782:CDS
TGTTTCTGAAGTTGCGATTA+TGG 0.271621 1.2:+36344768 MS.gene040782:CDS
AGATTCTTGTTTCTTTGAAA+TGG 0.278142 1.2:-36344494 None:intergenic
AAGCAAACCCTGAAGATTAT+AGG 0.291078 1.2:-36345721 None:intergenic
AAGAAATCCTCAAAAGGTTT+AGG 0.291529 1.2:-36344163 None:intergenic
AATTATTGAGGAGAAGAAAT+TGG 0.298748 1.2:+36344675 MS.gene040782:CDS
AGAGTTTCCCTATAATCTTC+AGG 0.299770 1.2:+36345713 MS.gene040782:CDS
GGTAGCTATGGTTAAGAAAA+AGG 0.309499 1.2:+36344525 MS.gene040782:CDS
TATGGTTGCATCGCGATAAA+AGG 0.310327 1.2:+36344929 MS.gene040782:CDS
CATCTATCTATAAACCGTTT+TGG 0.314837 1.2:-36345990 None:intergenic
AGCTTGCCCGCCCACTCGTC+AGG 0.315436 1.2:-36346269 None:intergenic
TGCAACACGATTCCGACAAT+TGG 0.331483 1.2:-36345796 None:intergenic
AGGTGGTTATGAGGATGATA+TGG 0.333296 1.2:+36345113 MS.gene040782:CDS
CAGGTCTGCGCAAACTGGTT+GGG 0.335408 1.2:+36345851 MS.gene040782:CDS
ATACATTTGGACTCGAACTA+TGG 0.339033 1.2:-36346136 None:intergenic
TTGGGAGGACAAGAGCAAAA+AGG 0.339571 1.2:-36345777 None:intergenic
GGTGTAAATGGGAGTGATTT+GGG 0.344967 1.2:-36344107 None:intergenic
CGCAAACTGGTTGGGGAGTT+AGG 0.346834 1.2:+36345859 MS.gene040782:CDS
CGGTGTAAATGGGAGTGATT+TGG 0.348980 1.2:-36344108 None:intergenic
AGAGGTAGCAACAGGGGTGG+AGG 0.363969 1.2:+36344825 MS.gene040782:CDS
TATATAGGATTACTGATTGC+TGG 0.364491 1.2:+36345343 MS.gene040782:CDS
ACCTGATATAGATTATTCTA+TGG 0.365689 1.2:+36346076 MS.gene040782:CDS
AGCAAACCCTGAAGATTATA+GGG 0.370075 1.2:-36345720 None:intergenic
CAAAACGGTTTATAGATAGA+TGG 0.370356 1.2:+36345991 MS.gene040782:CDS
ACAAATTGAACAAATACATT+TGG 0.370419 1.2:-36346149 None:intergenic
CCCGGTATACTCGCAGATAA+AGG 0.370510 1.2:-36345907 None:intergenic
ATGTTTATGATGGATTATAT+AGG 0.373190 1.2:+36345328 MS.gene040782:CDS
TCCATAGAATAATCTATATC+AGG 0.373576 1.2:-36346077 None:intergenic
ATGGTGGAATTATGTGTAAT+TGG 0.382160 1.2:+36345000 MS.gene040782:CDS
TATAGATAGATGGGCAGAAT+GGG 0.382516 1.2:+36346001 MS.gene040782:CDS
ATGTCATTAAATAGCCTAAC+AGG 0.384989 1.2:-36345543 None:intergenic
CTAGGGAGATTAAGAAAATT+GGG 0.390286 1.2:+36345460 MS.gene040782:CDS
GATTCTTGTTTCTTTGAAAT+GGG 0.395729 1.2:-36344493 None:intergenic
TGGGAGTGATTTGGGGATTG+AGG 0.396090 1.2:-36344099 None:intergenic
AGCATAGGTTGGAAGTGTTC+AGG 0.397659 1.2:+36345832 MS.gene040782:CDS
ATCATAGTCGTGGTTTCATA+AGG 0.402492 1.2:+36344878 MS.gene040782:CDS
TCGGAATCGTGTTGCACAAA+AGG 0.405257 1.2:+36345803 MS.gene040782:CDS
GCTCTTGTCCTCCCAATTGT+CGG 0.405346 1.2:+36345784 MS.gene040782:CDS
GGGAGTGATTTGGGGATTGA+GGG 0.409415 1.2:-36344098 None:intergenic
GGTAAGGTTTATGTTTATGA+TGG 0.410667 1.2:+36345318 MS.gene040782:CDS
CTGATCACAAATTTGAATTG+AGG 0.414878 1.2:-36345193 None:intergenic
CGCGATGCAACCATAACTTT+CGG 0.415089 1.2:-36344921 None:intergenic
TCAACATTGCGAAATGTTGC+TGG 0.416135 1.2:+36346104 MS.gene040782:CDS
AACATGGAAGAGGTAGCAAC+AGG 0.418367 1.2:+36344817 MS.gene040782:CDS
GCTTGTGAAAGGGAAGCCTT+TGG 0.419411 1.2:+36345740 MS.gene040782:CDS
AAAATGATAAAGGGATTTAT+CGG 0.421885 1.2:-36344335 None:intergenic
GGCAGTGAAGAGATTGGTTG+AGG 0.423218 1.2:+36344717 MS.gene040782:CDS
TTATGAGGATGATATGGAAT+TGG 0.423427 1.2:+36345119 MS.gene040782:CDS
AGAGGGTGGAAACCTTGCTT+TGG 0.427528 1.2:+36345221 MS.gene040782:CDS
GGTAGCAACAGGGGTGGAGG+GGG 0.427970 1.2:+36344828 MS.gene040782:CDS
TGAAGCGGCAAAAGCATTGT+TGG 0.430143 1.2:-36344374 None:intergenic
GCATTACGGGATCGAGATTA+CGG 0.431456 1.2:+36345254 MS.gene040782:CDS
AATTGAGGGGCAAGCTAAGA+TGG 0.435322 1.2:+36345416 MS.gene040782:CDS
TATAAGTTATTGAGAATTGA+GGG 0.436671 1.2:+36345402 MS.gene040782:CDS
CGGAATCGTGTTGCACAAAA+GGG 0.437967 1.2:+36345804 MS.gene040782:CDS
GCCTTTATCTGCGAGTATAC+CGG 0.438710 1.2:+36345906 MS.gene040782:CDS
TCCTTGGATCTTATTCAGGC+TGG 0.446886 1.2:+36345882 MS.gene040782:CDS
AGGTAGCAACAGGGGTGGAG+GGG 0.448282 1.2:+36344827 MS.gene040782:CDS
CCTTTATCTGCGAGTATACC+GGG 0.450373 1.2:+36345907 MS.gene040782:CDS
CATCAGAGCGGGAAAGCTAC+TGG 0.454438 1.2:+36345633 MS.gene040782:CDS
AGAGAACTCAGCATAGACTA+TGG 0.455539 1.2:+36346242 MS.gene040782:CDS
TTGGAGCGTAGTATGCATTA+CGG 0.455982 1.2:+36345240 MS.gene040782:CDS
TGGTTTGAAGAAGGGATGTC+TGG 0.461289 1.2:+36345363 MS.gene040782:CDS
TCAGGTATTAATTGATATGA+TGG 0.462483 1.2:-36346059 None:intergenic
GAGTTTCCCTATAATCTTCA+GGG 0.462595 1.2:+36345714 MS.gene040782:CDS
GATTGTTTCAGGTGGTTATG+AGG 0.465005 1.2:+36345104 MS.gene040782:CDS
TGAAGTTGCGATTATGGAGA+TGG 0.466700 1.2:+36344774 MS.gene040782:CDS
AATCAACCTCATTTCCCTCC+TGG 0.471602 1.2:+36344241 MS.gene040782:CDS
ACAATCACACTAGTAGCAAT+TGG 0.471909 1.2:-36345087 None:intergenic
ACTGATTGCTGGTTTGAAGA+AGG 0.473748 1.2:+36345354 MS.gene040782:CDS
CATCGCGATAAAAGGATAGT+TGG 0.475915 1.2:+36344937 MS.gene040782:CDS
AGAGGGAGAATGTTCCTGTT+AGG 0.476652 1.2:+36345529 MS.gene040782:CDS
TCAGGTCTGCGCAAACTGGT+TGG 0.479909 1.2:+36345850 MS.gene040782:CDS
AGTAGCAATTGGCTCGCCAT+TGG 0.481657 1.2:-36345076 None:intergenic
TAATGAAGGACCGAAAGTTA+TGG 0.481674 1.2:+36344911 MS.gene040782:CDS
CTTCAGGGTTTGCTTGTGAA+AGG 0.482699 1.2:+36345729 MS.gene040782:CDS
TCAGTCAATATTTCCGACCT+TGG 0.482765 1.2:+36344406 MS.gene040782:CDS
AGGTCTGCGCAAACTGGTTG+GGG 0.482929 1.2:+36345852 MS.gene040782:CDS
AATTCTTCTTTCTTCCTCCA+TGG 0.483343 1.2:-36345170 None:intergenic
TGGAGCGTAGTATGCATTAC+GGG 0.484208 1.2:+36345241 MS.gene040782:CDS
GCAACACGATTCCGACAATT+GGG 0.485278 1.2:-36345795 None:intergenic
TGCGATTATGGAGATGGAGA+TGG 0.487265 1.2:+36344780 MS.gene040782:CDS
GTATAAGTTATTGAGAATTG+AGG 0.488542 1.2:+36345401 MS.gene040782:CDS
GTGTTCAGGTCTGCGCAAAC+TGG 0.491340 1.2:+36345846 MS.gene040782:CDS
GGATGAGAAAAGAATTATTG+AGG 0.492648 1.2:+36344663 MS.gene040782:CDS
GGAGATTAAGAAAATTGGGT+TGG 0.494139 1.2:+36345464 MS.gene040782:CDS
TGTGGAGGCAGTGAAGAGAT+TGG 0.494725 1.2:+36344711 MS.gene040782:CDS
AGCGGTGCTCCGGTGTAAAT+GGG 0.497581 1.2:-36344118 None:intergenic
AAACAACCTCATTTCCCTCA+TGG 0.500206 1.2:+36344205 MS.gene040782:CDS
ATTGGTTGAGGAGAATATGT+TGG 0.501697 1.2:+36344729 MS.gene040782:CDS
TTCAGGGTTTGCTTGTGAAA+GGG 0.502624 1.2:+36345730 MS.gene040782:CDS
TATGGTTTGAAGCGGTGCTC+CGG 0.502918 1.2:-36344128 None:intergenic
CTTCTTTCTTCCTCCATGGC+CGG 0.504486 1.2:-36345166 None:intergenic
CTGATTGCTGGTTTGAAGAA+GGG 0.504895 1.2:+36345355 MS.gene040782:CDS
GGAAGATACTCATAATAAAG+AGG 0.506268 1.2:-36345582 None:intergenic
GGATTTATCGGAAGTAGCGT+TGG 0.507405 1.2:-36344323 None:intergenic
TGTGTGGAGGCTTGTACTGA+TGG 0.507598 1.2:+36345663 MS.gene040782:CDS
AGAATATGTTGGATGAGGAT+AGG 0.509832 1.2:+36344740 MS.gene040782:CDS
GAGGTAGCAACAGGGGTGGA+GGG 0.511415 1.2:+36344826 MS.gene040782:CDS
TAGATAGATGGGCAGAATGG+GGG 0.511424 1.2:+36346003 MS.gene040782:CDS
AGGATAGTTGGATCGATACC+TGG 0.518534 1.2:+36344949 MS.gene040782:CDS
ACTAAATCAGAACCCTATCA+TGG 0.518796 1.2:+36344429 MS.gene040782:CDS
GGCATCCCTGACGAGTGGGC+GGG 0.520972 1.2:+36346263 MS.gene040782:CDS
ATCGAGATTACGGTCATTCG+TGG 0.521504 1.2:+36345264 MS.gene040782:CDS
ATCTTGTTCGACGGTAGCTA+TGG 0.523651 1.2:+36344513 MS.gene040782:CDS
ACTCGTTAATATATCCAAAA+CGG 0.524396 1.2:+36345976 MS.gene040782:CDS
GAGGATTTCTTCACCACCCA+AGG 0.525934 1.2:+36344175 MS.gene040782:CDS
GCGATTATGGAGATGGAGAT+GGG 0.528244 1.2:+36344781 MS.gene040782:CDS
TCATAGTCGTGGTTTCATAA+GGG 0.531523 1.2:+36344879 MS.gene040782:CDS
ATGGAGATGGAGATGGGAGC+TGG 0.532864 1.2:+36344787 MS.gene040782:CDS
TTATAGATAGATGGGCAGAA+TGG 0.533260 1.2:+36346000 MS.gene040782:CDS
GTAATAATCAATACCGGCCA+TGG 0.534042 1.2:+36345153 MS.gene040782:CDS
AGATAGATGGGCAGAATGGG+GGG 0.535500 1.2:+36346004 MS.gene040782:CDS
AAAACGGTTTATAGATAGAT+GGG 0.536629 1.2:+36345992 MS.gene040782:CDS
TCGATACCTGGAGTTTATGT+TGG 0.538082 1.2:+36344961 MS.gene040782:CDS
TTATGATTCGCTACGTGTGT+TGG 0.545706 1.2:+36344630 MS.gene040782:CDS
GTGGTGAAGAAATCCTCAAA+AGG 0.546407 1.2:-36344169 None:intergenic
AATTTGTGATCAGAAATTAG+AGG 0.546612 1.2:+36345203 MS.gene040782:CDS
GACTGAGTTCTCCATTGAAG+CGG 0.547564 1.2:-36344389 None:intergenic
AAAGGGGATCAAGCATAGGT+TGG 0.547811 1.2:+36345821 MS.gene040782:CDS
GGTTTGTGTTTCATCAGAGC+GGG 0.550167 1.2:+36345622 MS.gene040782:CDS
TAGGGTTCTGATTTAGTCCA+AGG 0.558060 1.2:-36344423 None:intergenic
CCGTCTCATGCTATATGCAA+TGG 0.560658 1.2:+36346202 MS.gene040782:CDS
GAAGTAGCGTTGGAAGGTTG+TGG 0.561593 1.2:-36344313 None:intergenic
TGTTGATATTTCACACAAGA+GGG 0.562610 1.2:+36345512 MS.gene040782:CDS
AGGCAAGTCAGATGCTTGTG+AGG 0.562686 1.2:+36344545 MS.gene040782:CDS
GGTGATGTAATAATCAATAC+CGG 0.563689 1.2:+36345147 MS.gene040782:CDS
CTAAATCAGAACCCTATCAT+GGG 0.565746 1.2:+36344430 MS.gene040782:CDS
GGGTGCGTCTAGCTCTGGTA+AGG 0.568302 1.2:+36345302 MS.gene040782:CDS
TGGCATCCCTGACGAGTGGG+CGG 0.569853 1.2:+36346262 MS.gene040782:CDS
CTGTTGATATTTCACACAAG+AGG 0.573952 1.2:+36345511 MS.gene040782:CDS
CATTGCATATAGCATGAGAC+GGG 0.574005 1.2:-36346201 None:intergenic
TTCGTGGGATGAAGTATGAA+GGG 0.576304 1.2:+36345280 MS.gene040782:CDS
ATAGATAGATGGGCAGAATG+GGG 0.576328 1.2:+36346002 MS.gene040782:CDS
AAGGGCTGCGAGGTTAATGA+AGG 0.576510 1.2:+36344897 MS.gene040782:CDS
TGGTGATGAGAACATGGAAG+AGG 0.579103 1.2:+36344807 MS.gene040782:CDS
GGTTTCAGATCTGAGTATGA+AGG 0.579176 1.2:+36344567 MS.gene040782:CDS
ATTTGTGATCAGAAATTAGA+GGG 0.579266 1.2:+36345204 MS.gene040782:CDS
ATTCGTGGGATGAAGTATGA+AGG 0.581363 1.2:+36345279 MS.gene040782:CDS
GCTTGCCCGCCCACTCGTCA+GGG 0.582498 1.2:-36346268 None:intergenic
GCATACTACGCTCCAAAGCA+AGG 0.582921 1.2:-36345233 None:intergenic
TGAGGAGAATATGTTGGATG+AGG 0.583666 1.2:+36344735 MS.gene040782:CDS
TTGCATATGCAGATACAAGC+TGG 0.583868 1.2:+36345024 MS.gene040782:CDS
TGCTGAGTTCTCTCAATGGA+GGG 0.584149 1.2:-36346232 None:intergenic
TTATCGGAAGTAGCGTTGGA+AGG 0.585552 1.2:-36344319 None:intergenic
GTGTAAATGGGAGTGATTTG+GGG 0.585866 1.2:-36344106 None:intergenic
TTCCCTTGTTAAAATTACCC+CGG 0.586982 1.2:-36345925 None:intergenic
ATTGAGGGGCAAGCTAAGAT+GGG 0.587188 1.2:+36345417 MS.gene040782:CDS
ACATCGCCAACATAAACTCC+AGG 0.587833 1.2:-36344967 None:intergenic
CCATTGCATATAGCATGAGA+CGG 0.588288 1.2:-36346202 None:intergenic
TCATATCCAGGAGGGAAATG+AGG 0.588395 1.2:-36344247 None:intergenic
GGGACGAGTATGGTTTGAAG+CGG 0.590830 1.2:-36344136 None:intergenic
TGGTTGGGGAGTTAGGTCCT+TGG 0.593647 1.2:+36345866 MS.gene040782:CDS
CTCTGATGAAACACAAACCA+CGG 0.594028 1.2:-36345618 None:intergenic
TCATATCCATGAGGGAAATG+AGG 0.597266 1.2:-36344211 None:intergenic
AGCTACTGGTTGTGAATGTG+TGG 0.598292 1.2:+36345647 MS.gene040782:CDS
GGCAAGTCAGATGCTTGTGA+GGG 0.598305 1.2:+36344546 MS.gene040782:CDS
ACTAGTGTGATTGTTTCAGG+TGG 0.600870 1.2:+36345096 MS.gene040782:CDS
TCAACAGAAAGACAATACAT+AGG 0.601273 1.2:-36345495 None:intergenic
TGTTGTAGTACTCAGTGTAG+AGG 0.601469 1.2:-36344288 None:intergenic
ATGCTGAGTTCTCTCAATGG+AGG 0.603033 1.2:-36346233 None:intergenic
GGGAGCTGGTGATGAGAACA+TGG 0.604987 1.2:+36344801 MS.gene040782:CDS
TCTATGCTGAGTTCTCTCAA+TGG 0.607917 1.2:-36346236 None:intergenic
TCGAGATTACGGTCATTCGT+GGG 0.609445 1.2:+36345265 MS.gene040782:CDS
AGATGCATCGCAACATGATG+AGG 0.612112 1.2:+36344593 MS.gene040782:CDS
GGAAGAGGTAGCAACAGGGG+TGG 0.616106 1.2:+36344822 MS.gene040782:CDS
GTTCTGATTTAGTCCAAGGT+CGG 0.618069 1.2:-36344419 None:intergenic
TCCAGCCTGAATAAGATCCA+AGG 0.619090 1.2:-36345883 None:intergenic
GAAACAAGAATCTTGTTCGA+CGG 0.620737 1.2:+36344504 MS.gene040782:CDS
CTATGGCATCCCTGACGAGT+GGG 0.626017 1.2:+36346259 MS.gene040782:CDS
GCAACATGATGAGGAGAACA+AGG 0.627298 1.2:+36344602 MS.gene040782:CDS
ACATGGAAGAGGTAGCAACA+GGG 0.627473 1.2:+36344818 MS.gene040782:CDS
ACGTGTGTTGGAAAGTATTG+AGG 0.633669 1.2:+36344642 MS.gene040782:CDS
TGGTTTGTGTTTCATCAGAG+CGG 0.634243 1.2:+36345621 MS.gene040782:CDS
TGTGATCAGAAATTAGAGGG+TGG 0.640509 1.2:+36345207 MS.gene040782:CDS
AGACATCATAATCATAGTCG+TGG 0.641416 1.2:+36344868 MS.gene040782:CDS
CACAAAAGGGGATCAAGCAT+AGG 0.642092 1.2:+36345817 MS.gene040782:CDS
TACTGGTTGTGAATGTGTGG+AGG 0.644458 1.2:+36345650 MS.gene040782:CDS
ATAAGTTATTGAGAATTGAG+GGG 0.645000 1.2:+36345403 MS.gene040782:CDS
CATGGAAGAGGTAGCAACAG+GGG 0.645322 1.2:+36344819 MS.gene040782:CDS
CAAATCACTCCCATTTACAC+CGG 0.645622 1.2:+36344109 MS.gene040782:CDS
TAAATCAGAACCCTATCATG+GGG 0.649974 1.2:+36344431 MS.gene040782:CDS
ACTATGGCATCCCTGACGAG+TGG 0.651275 1.2:+36346258 MS.gene040782:CDS
ACACGATTCCGACAATTGGG+AGG 0.651351 1.2:-36345792 None:intergenic
TCGTGGGATGAAGTATGAAG+GGG 0.657054 1.2:+36345281 MS.gene040782:CDS
CCTAAAAGTAGGTCTTCCAA+TGG 0.661785 1.2:+36345060 MS.gene040782:CDS
GGAATCGTGTTGCACAAAAG+GGG 0.665750 1.2:+36345805 MS.gene040782:CDS
TGTTGTGTTCATATCCATGA+GGG 0.680837 1.2:-36344219 None:intergenic
CGTGGGATGAAGTATGAAGG+GGG 0.704890 1.2:+36345282 MS.gene040782:CDS
CTTTATCTGCGAGTATACCG+GGG 0.705407 1.2:+36345908 MS.gene040782:CDS
GATGATATGGAATTGGACGA+TGG 0.705518 1.2:+36345126 MS.gene040782:CDS
ATAATCAATACCGGCCATGG+AGG 0.709610 1.2:+36345156 MS.gene040782:CDS
GTGGTTTCATAAGGGCTGCG+AGG 0.711383 1.2:+36344887 MS.gene040782:CDS
ATTGCATATAGCATGAGACG+GGG 0.721884 1.2:-36346200 None:intergenic
TTGCATATAGCATGAGACGG+GGG 0.722787 1.2:-36346199 None:intergenic
TTGTTGTGTTCATATCCATG+AGG 0.736385 1.2:-36344220 None:intergenic
AAATCAGAACCCTATCATGG+GGG 0.761643 1.2:+36344432 MS.gene040782:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATTTTGAGAAAATGATAAA+GGG - chr1.2:36344347-36344366 None:intergenic 15.0%
!! AAAATGATAAAGGGATTTAT+CGG - chr1.2:36344338-36344357 None:intergenic 20.0%
!! ACAAATTGAACAAATACATT+TGG - chr1.2:36346152-36346171 None:intergenic 20.0%
!! TATAAGTTATTGAGAATTGA+GGG + chr1.2:36345402-36345421 MS.gene040782:CDS 20.0%
!!! ATGTTTATGATGGATTATAT+AGG + chr1.2:36345328-36345347 MS.gene040782:CDS 20.0%
!!! CAATTTTGAGAAAATGATAA+AGG - chr1.2:36344348-36344367 None:intergenic 20.0%
! AAAACGGTTTATAGATAGAT+GGG + chr1.2:36345992-36346011 MS.gene040782:CDS 25.0%
! AATTATTGAGGAGAAGAAAT+TGG + chr1.2:36344675-36344694 MS.gene040782:CDS 25.0%
! AATTTGTGATCAGAAATTAG+AGG + chr1.2:36345203-36345222 MS.gene040782:CDS 25.0%
! ACCTGATATAGATTATTCTA+TGG + chr1.2:36346076-36346095 MS.gene040782:CDS 25.0%
! ACTCGTTAATATATCCAAAA+CGG + chr1.2:36345976-36345995 MS.gene040782:CDS 25.0%
! ATAAGTTATTGAGAATTGAG+GGG + chr1.2:36345403-36345422 MS.gene040782:CDS 25.0%
! ATTTGTGATCAGAAATTAGA+GGG + chr1.2:36345204-36345223 MS.gene040782:CDS 25.0%
! GTATAAGTTATTGAGAATTG+AGG + chr1.2:36345401-36345420 MS.gene040782:CDS 25.0%
! TCAGGTATTAATTGATATGA+TGG - chr1.2:36346062-36346081 None:intergenic 25.0%
! TCCATAGAATAATCTATATC+AGG - chr1.2:36346080-36346099 None:intergenic 25.0%
!! AGATTCTTGTTTCTTTGAAA+TGG - chr1.2:36344497-36344516 None:intergenic 25.0%
!! TTGATTTTCTTCCTAAAAGT+AGG + chr1.2:36345049-36345068 MS.gene040782:CDS 25.0%
!!! GATTCTTGTTTCTTTGAAAT+GGG - chr1.2:36344496-36344515 None:intergenic 25.0%
!!! GCTCAAATTTTAACAATGAA+TGG + chr1.2:36345951-36345970 MS.gene040782:CDS 25.0%
AAGAAATCCTCAAAAGGTTT+AGG - chr1.2:36344166-36344185 None:intergenic 30.0%
ATGTCATTAAATAGCCTAAC+AGG - chr1.2:36345546-36345565 None:intergenic 30.0%
CAAAACGGTTTATAGATAGA+TGG + chr1.2:36345991-36346010 MS.gene040782:CDS 30.0%
CTAGGGAGATTAAGAAAATT+GGG + chr1.2:36345460-36345479 MS.gene040782:CDS 30.0%
CTGATCACAAATTTGAATTG+AGG - chr1.2:36345196-36345215 None:intergenic 30.0%
GGAAGATACTCATAATAAAG+AGG - chr1.2:36345585-36345604 None:intergenic 30.0%
GGATGAGAAAAGAATTATTG+AGG + chr1.2:36344663-36344682 MS.gene040782:CDS 30.0%
GGTAAGGTTTATGTTTATGA+TGG + chr1.2:36345318-36345337 MS.gene040782:CDS 30.0%
GGTGATGTAATAATCAATAC+CGG + chr1.2:36345147-36345166 MS.gene040782:CDS 30.0%
TCAACAGAAAGACAATACAT+AGG - chr1.2:36345498-36345517 None:intergenic 30.0%
TGTTGATATTTCACACAAGA+GGG + chr1.2:36345512-36345531 MS.gene040782:CDS 30.0%
TTATGAGGATGATATGGAAT+TGG + chr1.2:36345119-36345138 MS.gene040782:CDS 30.0%
! ATGGTGGAATTATGTGTAAT+TGG + chr1.2:36345000-36345019 MS.gene040782:CDS 30.0%
! CATCTATCTATAAACCGTTT+TGG - chr1.2:36345993-36346012 None:intergenic 30.0%
! TATATAGGATTACTGATTGC+TGG + chr1.2:36345343-36345362 MS.gene040782:CDS 30.0%
! TGATTTTTGTGTTCATATCC+AGG - chr1.2:36344262-36344281 None:intergenic 30.0%
!! TGTTGTTCTAAAAAAGGCTA+GGG + chr1.2:36345443-36345462 MS.gene040782:CDS 30.0%
AAGCAAACCCTGAAGATTAT+AGG - chr1.2:36345724-36345743 None:intergenic 35.0%
AATTCTTCTTTCTTCCTCCA+TGG - chr1.2:36345173-36345192 None:intergenic 35.0%
ACAATCACACTAGTAGCAAT+TGG - chr1.2:36345090-36345109 None:intergenic 35.0%
ACTAAATCAGAACCCTATCA+TGG + chr1.2:36344429-36344448 MS.gene040782:CDS 35.0%
AGAATATGTTGGATGAGGAT+AGG + chr1.2:36344740-36344759 MS.gene040782:CDS 35.0%
AGACATCATAATCATAGTCG+TGG + chr1.2:36344868-36344887 MS.gene040782:CDS 35.0%
AGAGTTTCCCTATAATCTTC+AGG + chr1.2:36345713-36345732 MS.gene040782:CDS 35.0%
AGCAAACCCTGAAGATTATA+GGG - chr1.2:36345723-36345742 None:intergenic 35.0%
ATACATTTGGACTCGAACTA+TGG - chr1.2:36346139-36346158 None:intergenic 35.0%
ATCATAGTCGTGGTTTCATA+AGG + chr1.2:36344878-36344897 MS.gene040782:CDS 35.0%
ATTGGTTGAGGAGAATATGT+TGG + chr1.2:36344729-36344748 MS.gene040782:CDS 35.0%
CTAAATCAGAACCCTATCAT+GGG + chr1.2:36344430-36344449 MS.gene040782:CDS 35.0%
CTGTTGATATTTCACACAAG+AGG + chr1.2:36345511-36345530 MS.gene040782:CDS 35.0%
GAAACAAGAATCTTGTTCGA+CGG + chr1.2:36344504-36344523 MS.gene040782:CDS 35.0%
GAGTTTCCCTATAATCTTCA+GGG + chr1.2:36345714-36345733 MS.gene040782:CDS 35.0%
GCTAGGGAGATTAAGAAAAT+TGG + chr1.2:36345459-36345478 MS.gene040782:CDS 35.0%
GGAGATTAAGAAAATTGGGT+TGG + chr1.2:36345464-36345483 MS.gene040782:CDS 35.0%
GGTAGCTATGGTTAAGAAAA+AGG + chr1.2:36344525-36344544 MS.gene040782:CDS 35.0%
TAAATCAGAACCCTATCATG+GGG + chr1.2:36344431-36344450 MS.gene040782:CDS 35.0%
TAATGAAGGACCGAAAGTTA+TGG + chr1.2:36344911-36344930 MS.gene040782:CDS 35.0%
TATAGATAGATGGGCAGAAT+GGG + chr1.2:36346001-36346020 MS.gene040782:CDS 35.0%
TCATAGTCGTGGTTTCATAA+GGG + chr1.2:36344879-36344898 MS.gene040782:CDS 35.0%
TGTTGTGTTCATATCCATGA+GGG - chr1.2:36344222-36344241 None:intergenic 35.0%
TTATAGATAGATGGGCAGAA+TGG + chr1.2:36346000-36346019 MS.gene040782:CDS 35.0%
TTCCCTTGTTAAAATTACCC+CGG - chr1.2:36345928-36345947 None:intergenic 35.0%
TTGTTGTGTTCATATCCATG+AGG - chr1.2:36344223-36344242 None:intergenic 35.0%
! AACCACGGAAAAGTAGTTTT+CGG - chr1.2:36345606-36345625 None:intergenic 35.0%
! ATTGGCTGATGAAGTTTTTG+TGG + chr1.2:36344693-36344712 MS.gene040782:CDS 35.0%
! CGATGTTTTCTTGTATATGG+TGG + chr1.2:36344984-36345003 MS.gene040782:CDS 35.0%
! TGCTTTTGCTCTATGAAGAA+TGG + chr1.2:36345687-36345706 MS.gene040782:CDS 35.0%
! TGGCGATGTTTTCTTGTATA+TGG + chr1.2:36344981-36345000 MS.gene040782:CDS 35.0%
! TTTTGCTCTATGAAGAATGG+AGG + chr1.2:36345690-36345709 MS.gene040782:CDS 35.0%
! TTTTGTGTTCATATCCAGGA+GGG - chr1.2:36344258-36344277 None:intergenic 35.0%
! TTTTTGTGTTCATATCCAGG+AGG - chr1.2:36344259-36344278 None:intergenic 35.0%
!! ATACCGGGGTAATTTTAACA+AGG + chr1.2:36345922-36345941 MS.gene040782:CDS 35.0%
!! CCTCAAAAGGTTTAGGTTTT+GGG - chr1.2:36344159-36344178 None:intergenic 35.0%
!! GGGTAGTGTTGTTCTAAAAA+AGG + chr1.2:36345437-36345456 MS.gene040782:CDS 35.0%
!! GTGTTGTTCTAAAAAAGGCT+AGG + chr1.2:36345442-36345461 MS.gene040782:CDS 35.0%
!! TACCGGGGTAATTTTAACAA+GGG + chr1.2:36345923-36345942 MS.gene040782:CDS 35.0%
!! TCCTCAAAAGGTTTAGGTTT+TGG - chr1.2:36344160-36344179 None:intergenic 35.0%
!! TGTTTCTGAAGTTGCGATTA+TGG + chr1.2:36344768-36344787 MS.gene040782:CDS 35.0%
!!! AAGCCTTTGGTTTTTGAATG+TGG + chr1.2:36345753-36345772 MS.gene040782:CDS 35.0%
!!! AGGGAAATGAGGTTGTTTTT+GGG - chr1.2:36344203-36344222 None:intergenic 35.0%
AAACAACCTCATTTCCCTCA+TGG + chr1.2:36344205-36344224 MS.gene040782:CDS 40.0%
AAATCAGAACCCTATCATGG+GGG + chr1.2:36344432-36344451 MS.gene040782:CDS 40.0%
ACTAGTGTGATTGTTTCAGG+TGG + chr1.2:36345096-36345115 MS.gene040782:CDS 40.0%
AGAGAACTCAGCATAGACTA+TGG + chr1.2:36346242-36346261 MS.gene040782:CDS 40.0%
AGGTGGTTATGAGGATGATA+TGG + chr1.2:36345113-36345132 MS.gene040782:CDS 40.0%
ATAGATAGATGGGCAGAATG+GGG + chr1.2:36346002-36346021 MS.gene040782:CDS 40.0%
ATTCGTGGGATGAAGTATGA+AGG + chr1.2:36345279-36345298 MS.gene040782:CDS 40.0%
ATTGCATATAGCATGAGACG+GGG - chr1.2:36346203-36346222 None:intergenic 40.0%
CAAATCACTCCCATTTACAC+CGG + chr1.2:36344109-36344128 MS.gene040782:CDS 40.0%
CATCGCGATAAAAGGATAGT+TGG + chr1.2:36344937-36344956 MS.gene040782:CDS 40.0%
CATTGCATATAGCATGAGAC+GGG - chr1.2:36346204-36346223 None:intergenic 40.0%
CCATTGCATATAGCATGAGA+CGG - chr1.2:36346205-36346224 None:intergenic 40.0%
CCTAAAAGTAGGTCTTCCAA+TGG + chr1.2:36345060-36345079 MS.gene040782:CDS 40.0%
CTCTGATGAAACACAAACCA+CGG - chr1.2:36345621-36345640 None:intergenic 40.0%
GATGATATGGAATTGGACGA+TGG + chr1.2:36345126-36345145 MS.gene040782:CDS 40.0%
GCTACTAGTGTGATTGTTTC+AGG + chr1.2:36345093-36345112 MS.gene040782:CDS 40.0%
GGTGTAAATGGGAGTGATTT+GGG - chr1.2:36344110-36344129 None:intergenic 40.0%
GGTTTCAGATCTGAGTATGA+AGG + chr1.2:36344567-36344586 MS.gene040782:CDS 40.0%
GTAATAATCAATACCGGCCA+TGG + chr1.2:36345153-36345172 MS.gene040782:CDS 40.0%
GTGGTGAAGAAATCCTCAAA+AGG - chr1.2:36344172-36344191 None:intergenic 40.0%
GTGTAAATGGGAGTGATTTG+GGG - chr1.2:36344109-36344128 None:intergenic 40.0%
GTTCTGATTTAGTCCAAGGT+CGG - chr1.2:36344422-36344441 None:intergenic 40.0%
TAGGTCCTTGGATCTTATTC+AGG + chr1.2:36345878-36345897 MS.gene040782:CDS 40.0%
TATGGTTGCATCGCGATAAA+AGG + chr1.2:36344929-36344948 MS.gene040782:CDS 40.0%
TCAACATTGCGAAATGTTGC+TGG + chr1.2:36346104-36346123 MS.gene040782:CDS 40.0%
TCAGTCAATATTTCCGACCT+TGG + chr1.2:36344406-36344425 MS.gene040782:CDS 40.0%
TCATATCCATGAGGGAAATG+AGG - chr1.2:36344214-36344233 None:intergenic 40.0%
TCGATACCTGGAGTTTATGT+TGG + chr1.2:36344961-36344980 MS.gene040782:CDS 40.0%
TCTATGCTGAGTTCTCTCAA+TGG - chr1.2:36346239-36346258 None:intergenic 40.0%
TGAAGTTGCGATTATGGAGA+TGG + chr1.2:36344774-36344793 MS.gene040782:CDS 40.0%
TGAGGAGAATATGTTGGATG+AGG + chr1.2:36344735-36344754 MS.gene040782:CDS 40.0%
TGTGATCAGAAATTAGAGGG+TGG + chr1.2:36345207-36345226 MS.gene040782:CDS 40.0%
TGTTGTAGTACTCAGTGTAG+AGG - chr1.2:36344291-36344310 None:intergenic 40.0%
TTATGATTCGCTACGTGTGT+TGG + chr1.2:36344630-36344649 MS.gene040782:CDS 40.0%
TTCGTGGGATGAAGTATGAA+GGG + chr1.2:36345280-36345299 MS.gene040782:CDS 40.0%
TTGCATATGCAGATACAAGC+TGG + chr1.2:36345024-36345043 MS.gene040782:CDS 40.0%
TTGGAGCGTAGTATGCATTA+CGG + chr1.2:36345240-36345259 MS.gene040782:CDS 40.0%
! CCCAAAACCTAAACCTTTTG+AGG + chr1.2:36344156-36344175 MS.gene040782:CDS 40.0%
! GATTGTTTCAGGTGGTTATG+AGG + chr1.2:36345104-36345123 MS.gene040782:CDS 40.0%
! TAGGGTTCTGATTTAGTCCA+AGG - chr1.2:36344426-36344445 None:intergenic 40.0%
! TGGTTTGTGTTTCATCAGAG+CGG + chr1.2:36345621-36345640 MS.gene040782:CDS 40.0%
! TTCAGGGTTTGCTTGTGAAA+GGG + chr1.2:36345730-36345749 MS.gene040782:CDS 40.0%
!! ACGTGTGTTGGAAAGTATTG+AGG + chr1.2:36344642-36344661 MS.gene040782:CDS 40.0%
!! ACTGATTGCTGGTTTGAAGA+AGG + chr1.2:36345354-36345373 MS.gene040782:CDS 40.0%
!! CCATTGGAAGACCTACTTTT+AGG - chr1.2:36345063-36345082 None:intergenic 40.0%
!! CTGATTGCTGGTTTGAAGAA+GGG + chr1.2:36345355-36345374 MS.gene040782:CDS 40.0%
!! GAGGGAAATGAGGTTGTTTT+TGG - chr1.2:36344204-36344223 None:intergenic 40.0%
!! TTCCGAAAACTACTTTTCCG+TGG + chr1.2:36345601-36345620 MS.gene040782:CDS 40.0%
!!! AGGTTGTTTTTGGGAACCTT+GGG - chr1.2:36344194-36344213 None:intergenic 40.0%
!!! TTTAGGTTTTGGGACGAGTA+TGG - chr1.2:36344149-36344168 None:intergenic 40.0%
AAAGGGGATCAAGCATAGGT+TGG + chr1.2:36345821-36345840 MS.gene040782:CDS 45.0%
AACATGGAAGAGGTAGCAAC+AGG + chr1.2:36344817-36344836 MS.gene040782:CDS 45.0%
AATCAACCTCATTTCCCTCC+TGG + chr1.2:36344241-36344260 MS.gene040782:CDS 45.0%
AATTGAGGGGCAAGCTAAGA+TGG + chr1.2:36345416-36345435 MS.gene040782:CDS 45.0%
ACAAAATCCACCCCCATGAT+AGG - chr1.2:36344445-36344464 None:intergenic 45.0%
ACATCGCCAACATAAACTCC+AGG - chr1.2:36344970-36344989 None:intergenic 45.0%
ACATGGAAGAGGTAGCAACA+GGG + chr1.2:36344818-36344837 MS.gene040782:CDS 45.0%
AGAGGGAGAATGTTCCTGTT+AGG + chr1.2:36345529-36345548 MS.gene040782:CDS 45.0%
AGATGCATCGCAACATGATG+AGG + chr1.2:36344593-36344612 MS.gene040782:CDS 45.0%
AGGATAGTTGGATCGATACC+TGG + chr1.2:36344949-36344968 MS.gene040782:CDS 45.0%
ATAATCAATACCGGCCATGG+AGG + chr1.2:36345156-36345175 MS.gene040782:CDS 45.0%
ATCGAGATTACGGTCATTCG+TGG + chr1.2:36345264-36345283 MS.gene040782:CDS 45.0%
ATCTTGTTCGACGGTAGCTA+TGG + chr1.2:36344513-36344532 MS.gene040782:CDS 45.0%
ATGCTGAGTTCTCTCAATGG+AGG - chr1.2:36346236-36346255 None:intergenic 45.0%
ATTGAGGGGCAAGCTAAGAT+GGG + chr1.2:36345417-36345436 MS.gene040782:CDS 45.0%
CAAAATCCACCCCCATGATA+GGG - chr1.2:36344444-36344463 None:intergenic 45.0%
CACAAAAGGGGATCAAGCAT+AGG + chr1.2:36345817-36345836 MS.gene040782:CDS 45.0%
CCGTCTCATGCTATATGCAA+TGG + chr1.2:36346202-36346221 MS.gene040782:CDS 45.0%
CCTTTATCTGCGAGTATACC+GGG + chr1.2:36345907-36345926 MS.gene040782:CDS 45.0%
CGCGATGCAACCATAACTTT+CGG - chr1.2:36344924-36344943 None:intergenic 45.0%
CGGAATCGTGTTGCACAAAA+GGG + chr1.2:36345804-36345823 MS.gene040782:CDS 45.0%
CGGTGTAAATGGGAGTGATT+TGG - chr1.2:36344111-36344130 None:intergenic 45.0%
CTTTATCTGCGAGTATACCG+GGG + chr1.2:36345908-36345927 MS.gene040782:CDS 45.0%
GACTGAGTTCTCCATTGAAG+CGG - chr1.2:36344392-36344411 None:intergenic 45.0%
GCAACACGATTCCGACAATT+GGG - chr1.2:36345798-36345817 None:intergenic 45.0%
GCAACATGATGAGGAGAACA+AGG + chr1.2:36344602-36344621 MS.gene040782:CDS 45.0%
GCATTACGGGATCGAGATTA+CGG + chr1.2:36345254-36345273 MS.gene040782:CDS 45.0%
GCCTTTATCTGCGAGTATAC+CGG + chr1.2:36345906-36345925 MS.gene040782:CDS 45.0%
GCGATTATGGAGATGGAGAT+GGG + chr1.2:36344781-36344800 MS.gene040782:CDS 45.0%
GGAATCGTGTTGCACAAAAG+GGG + chr1.2:36345805-36345824 MS.gene040782:CDS 45.0%
GGATTTATCGGAAGTAGCGT+TGG - chr1.2:36344326-36344345 None:intergenic 45.0%
GGGCCACATTCAAAAACCAA+AGG - chr1.2:36345759-36345778 None:intergenic 45.0%
GGTTTGTGTTTCATCAGAGC+GGG + chr1.2:36345622-36345641 MS.gene040782:CDS 45.0%
TAGATAGATGGGCAGAATGG+GGG + chr1.2:36346003-36346022 MS.gene040782:CDS 45.0%
TCATATCCAGGAGGGAAATG+AGG - chr1.2:36344250-36344269 None:intergenic 45.0%
TCCAGCCTGAATAAGATCCA+AGG - chr1.2:36345886-36345905 None:intergenic 45.0%
TCCTTGGATCTTATTCAGGC+TGG + chr1.2:36345882-36345901 MS.gene040782:CDS 45.0%
TCGAGATTACGGTCATTCGT+GGG + chr1.2:36345265-36345284 MS.gene040782:CDS 45.0%
TCGGAATCGTGTTGCACAAA+AGG + chr1.2:36345803-36345822 MS.gene040782:CDS 45.0%
TCGTGGGATGAAGTATGAAG+GGG + chr1.2:36345281-36345300 MS.gene040782:CDS 45.0%
TGCAACACGATTCCGACAAT+TGG - chr1.2:36345799-36345818 None:intergenic 45.0%
TGCGATTATGGAGATGGAGA+TGG + chr1.2:36344780-36344799 MS.gene040782:CDS 45.0%
TGCTGAGTTCTCTCAATGGA+GGG - chr1.2:36346235-36346254 None:intergenic 45.0%
TGGAGCGTAGTATGCATTAC+GGG + chr1.2:36345241-36345260 MS.gene040782:CDS 45.0%
TGGGAGGACAAGAGCAAAAA+GGG - chr1.2:36345779-36345798 None:intergenic 45.0%
TGGTTTGAAGAAGGGATGTC+TGG + chr1.2:36345363-36345382 MS.gene040782:CDS 45.0%
TTGCATATAGCATGAGACGG+GGG - chr1.2:36346202-36346221 None:intergenic 45.0%
TTGGGAGGACAAGAGCAAAA+AGG - chr1.2:36345780-36345799 None:intergenic 45.0%
! AGCTACTGGTTGTGAATGTG+TGG + chr1.2:36345647-36345666 MS.gene040782:CDS 45.0%
! CTTCAGGGTTTGCTTGTGAA+AGG + chr1.2:36345729-36345748 MS.gene040782:CDS 45.0%
! GGCTGATGAAGTTTTTGTGG+AGG + chr1.2:36344696-36344715 MS.gene040782:CDS 45.0%
! TACTGGTTGTGAATGTGTGG+AGG + chr1.2:36345650-36345669 MS.gene040782:CDS 45.0%
! TGGTGATGAGAACATGGAAG+AGG + chr1.2:36344807-36344826 MS.gene040782:CDS 45.0%
! TTATCGGAAGTAGCGTTGGA+AGG - chr1.2:36344322-36344341 None:intergenic 45.0%
!! AGCATAGGTTGGAAGTGTTC+AGG + chr1.2:36345832-36345851 MS.gene040782:CDS 45.0%
!! CAATGCTTTTGCCGCTTCAA+TGG + chr1.2:36344378-36344397 MS.gene040782:CDS 45.0%
!! TATCATGGGGGTGGATTTTG+TGG + chr1.2:36344444-36344463 MS.gene040782:CDS 45.0%
!! TGAAGCGGCAAAAGCATTGT+TGG - chr1.2:36344377-36344396 None:intergenic 45.0%
!!! GAGGTTGTTTTTGGGAACCT+TGG - chr1.2:36344195-36344214 None:intergenic 45.0%
!!! TTGTTTTTGGGAACCTTGGG+TGG - chr1.2:36344191-36344210 None:intergenic 45.0%
AAGGGCTGCGAGGTTAATGA+AGG + chr1.2:36344897-36344916 MS.gene040782:CDS 50.0%
ACACGATTCCGACAATTGGG+AGG - chr1.2:36345795-36345814 None:intergenic 50.0%
AGAGGGTGGAAACCTTGCTT+TGG + chr1.2:36345221-36345240 MS.gene040782:CDS 50.0%
AGATAGATGGGCAGAATGGG+GGG + chr1.2:36346004-36346023 MS.gene040782:CDS 50.0%
AGGCAAGTCAGATGCTTGTG+AGG + chr1.2:36344545-36344564 MS.gene040782:CDS 50.0%
CATGGAAGAGGTAGCAACAG+GGG + chr1.2:36344819-36344838 MS.gene040782:CDS 50.0%
CCCGGTATACTCGCAGATAA+AGG - chr1.2:36345910-36345929 None:intergenic 50.0%
CGTGGGATGAAGTATGAAGG+GGG + chr1.2:36345282-36345301 MS.gene040782:CDS 50.0%
CTTCTTTCTTCCTCCATGGC+CGG - chr1.2:36345169-36345188 None:intergenic 50.0%
GAGGATTTCTTCACCACCCA+AGG + chr1.2:36344175-36344194 MS.gene040782:CDS 50.0%
GCATACTACGCTCCAAAGCA+AGG - chr1.2:36345236-36345255 None:intergenic 50.0%
GCTCTTGTCCTCCCAATTGT+CGG + chr1.2:36345784-36345803 MS.gene040782:CDS 50.0%
GCTTGTGAAAGGGAAGCCTT+TGG + chr1.2:36345740-36345759 MS.gene040782:CDS 50.0%
GGCAAGTCAGATGCTTGTGA+GGG + chr1.2:36344546-36344565 MS.gene040782:CDS 50.0%
GGGACGAGTATGGTTTGAAG+CGG - chr1.2:36344139-36344158 None:intergenic 50.0%
GTGGAGGGGGAAATGTTGAA+TGG + chr1.2:36344841-36344860 MS.gene040782:CDS 50.0%
TGTGGAGGCAGTGAAGAGAT+TGG + chr1.2:36344711-36344730 MS.gene040782:CDS 50.0%
TGTGTGGAGGCTTGTACTGA+TGG + chr1.2:36345663-36345682 MS.gene040782:CDS 50.0%
! GAAGTAGCGTTGGAAGGTTG+TGG - chr1.2:36344316-36344335 None:intergenic 50.0%
! GGCAGTGAAGAGATTGGTTG+AGG + chr1.2:36344717-36344736 MS.gene040782:CDS 50.0%
! GGGAGTGATTTGGGGATTGA+GGG - chr1.2:36344101-36344120 None:intergenic 50.0%
! TATGGTTTGAAGCGGTGCTC+CGG - chr1.2:36344131-36344150 None:intergenic 50.0%
! TGGGAGTGATTTGGGGATTG+AGG - chr1.2:36344102-36344121 None:intergenic 50.0%
!! AGTAGCAATTGGCTCGCCAT+TGG - chr1.2:36345079-36345098 None:intergenic 50.0%
AAGCGGTGCTCCGGTGTAAA+TGG - chr1.2:36344122-36344141 None:intergenic 55.0%
ACTATGGCATCCCTGACGAG+TGG + chr1.2:36346258-36346277 MS.gene040782:CDS 55.0%
AGCGGTGCTCCGGTGTAAAT+GGG - chr1.2:36344121-36344140 None:intergenic 55.0%
AGGTCTGCGCAAACTGGTTG+GGG + chr1.2:36345852-36345871 MS.gene040782:CDS 55.0%
ATGGAGATGGAGATGGGAGC+TGG + chr1.2:36344787-36344806 MS.gene040782:CDS 55.0%
CAGGTCTGCGCAAACTGGTT+GGG + chr1.2:36345851-36345870 MS.gene040782:CDS 55.0%
CATCAGAGCGGGAAAGCTAC+TGG + chr1.2:36345633-36345652 MS.gene040782:CDS 55.0%
CGCAAACTGGTTGGGGAGTT+AGG + chr1.2:36345859-36345878 MS.gene040782:CDS 55.0%
CTATGGCATCCCTGACGAGT+GGG + chr1.2:36346259-36346278 MS.gene040782:CDS 55.0%
GTGGTTTCATAAGGGCTGCG+AGG + chr1.2:36344887-36344906 MS.gene040782:CDS 55.0%
GTGTTCAGGTCTGCGCAAAC+TGG + chr1.2:36345846-36345865 MS.gene040782:CDS 55.0%
TCAGAACCCTATCATGGGGG+TGG + chr1.2:36344435-36344454 MS.gene040782:CDS 55.0%
TCAGGTCTGCGCAAACTGGT+TGG + chr1.2:36345850-36345869 MS.gene040782:CDS 55.0%
TGGTTGGGGAGTTAGGTCCT+TGG + chr1.2:36345866-36345885 MS.gene040782:CDS 55.0%
! GGGAGCTGGTGATGAGAACA+TGG + chr1.2:36344801-36344820 MS.gene040782:CDS 55.0%
AGAGGTAGCAACAGGGGTGG+AGG + chr1.2:36344825-36344844 MS.gene040782:CDS 60.0%
AGGTAGCAACAGGGGTGGAG+GGG + chr1.2:36344827-36344846 MS.gene040782:CDS 60.0%
GAGGTAGCAACAGGGGTGGA+GGG + chr1.2:36344826-36344845 MS.gene040782:CDS 60.0%
GGAAGAGGTAGCAACAGGGG+TGG + chr1.2:36344822-36344841 MS.gene040782:CDS 60.0%
!! GGGTGCGTCTAGCTCTGGTA+AGG + chr1.2:36345302-36345321 MS.gene040782:CDS 60.0%
GGTAGCAACAGGGGTGGAGG+GGG + chr1.2:36344828-36344847 MS.gene040782:CDS 65.0%
TGGCATCCCTGACGAGTGGG+CGG + chr1.2:36346262-36346281 MS.gene040782:CDS 65.0%
! GAAGGGGGTGCGTCTAGCTC+TGG + chr1.2:36345297-36345316 MS.gene040782:CDS 65.0%
AGCTTGCCCGCCCACTCGTC+AGG - chr1.2:36346272-36346291 None:intergenic 70.0%
GCTTGCCCGCCCACTCGTCA+GGG - chr1.2:36346271-36346290 None:intergenic 70.0%
GGCATCCCTGACGAGTGGGC+GGG + chr1.2:36346263-36346282 MS.gene040782:CDS 70.0%


Chromosome Type Strat End Strand Name
chr1.2 gene 36344091 36346299 36344091 ID=MS.gene040782
chr1.2 mRNA 36344091 36346299 36344091 ID=MS.gene040782.t1;Parent=MS.gene040782
chr1.2 exon 36344091 36346299 36344091 ID=MS.gene040782.t1.exon1;Parent=MS.gene040782.t1
chr1.2 CDS 36344091 36346299 36344091 ID=cds.MS.gene040782.t1;Parent=MS.gene040782.t1
Gene Sequence

>MS.gene040782

ATGTCAACCCTCAATCCCCAAATCACTCCCATTTACACCGGAGCACCGCTTCAAACCATACTCGTCCCAAAACCTAAACCTTTTGAGGATTTCTTCACCACCCAAGGTTCCCAAAAACAACCTCATTTCCCTCATGGATATGAACACAACAATCAACCTCATTTCCCTCCTGGATATGAACACAAAAATCAATCAAACCTCTACACTGAGTACTACAACATTCCACAACCTTCCAACGCTACTTCCGATAAATCCCTTTATCATTTTCTCAAAATTGATGATTCCAACAATGCTTTTGCCGCTTCAATGGAGAACTCAGTCAATATTTCCGACCTTGGACTAAATCAGAACCCTATCATGGGGGTGGATTTTGTGGATGATAGAATTGATCAATCTATTGTGCCCATTTCAAAGAAACAAGAATCTTGTTCGACGGTAGCTATGGTTAAGAAAAAGGCAAGTCAGATGCTTGTGAGGGTTTCAGATCTGAGTATGAAGGATCAGATGCATCGCAACATGATGAGGAGAACAAGGATGACTTATGATTCGCTACGTGTGTTGGAAAGTATTGAGGATGAGAAAAGAATTATTGAGGAGAAGAAATTGGCTGATGAAGTTTTTGTGGAGGCAGTGAAGAGATTGGTTGAGGAGAATATGTTGGATGAGGATAGGATATTTGTTTCTGAAGTTGCGATTATGGAGATGGAGATGGGAGCTGGTGATGAGAACATGGAAGAGGTAGCAACAGGGGTGGAGGGGGAAATGTTGAATGGAAGAAGACATCATAATCATAGTCGTGGTTTCATAAGGGCTGCGAGGTTAATGAAGGACCGAAAGTTATGGTTGCATCGCGATAAAAGGATAGTTGGATCGATACCTGGAGTTTATGTTGGCGATGTTTTCTTGTATATGGTGGAATTATGTGTAATTGGTTTGCATATGCAGATACAAGCTGGCATTGATTTTCTTCCTAAAAGTAGGTCTTCCAATGGCGAGCCAATTGCTACTAGTGTGATTGTTTCAGGTGGTTATGAGGATGATATGGAATTGGACGATGGTGATGTAATAATCAATACCGGCCATGGAGGAAGAAAGAAGAATTCCTCAATTCAAATTTGTGATCAGAAATTAGAGGGTGGAAACCTTGCTTTGGAGCGTAGTATGCATTACGGGATCGAGATTACGGTCATTCGTGGGATGAAGTATGAAGGGGGTGCGTCTAGCTCTGGTAAGGTTTATGTTTATGATGGATTATATAGGATTACTGATTGCTGGTTTGAAGAAGGGATGTCTGGTTTTAGAGTTTTTAAGTATAAGTTATTGAGAATTGAGGGGCAAGCTAAGATGGGTAGTGTTGTTCTAAAAAAGGCTAGGGAGATTAAGAAAATTGGGTTGGATGTTAAGCCTATGTATTGTCTTTCTGTTGATATTTCACACAAGAGGGAGAATGTTCCTGTTAGGCTATTTAATGACATAGATGACAATCAAGAACCTCTTTATTATGAGTATCTTCCGAAAACTACTTTTCCGTGGTTTGTGTTTCATCAGAGCGGGAAAGCTACTGGTTGTGAATGTGTGGAGGCTTGTACTGATGGCTGCTTTTGCTCTATGAAGAATGGAGGAGAGTTTCCCTATAATCTTCAGGGTTTGCTTGTGAAAGGGAAGCCTTTGGTTTTTGAATGTGGCCCTTTTTGCTCTTGTCCTCCCAATTGTCGGAATCGTGTTGCACAAAAGGGGATCAAGCATAGGTTGGAAGTGTTCAGGTCTGCGCAAACTGGTTGGGGAGTTAGGTCCTTGGATCTTATTCAGGCTGGAGCCTTTATCTGCGAGTATACCGGGGTAATTTTAACAAGGGAACAAGCTCAAATTTTAACAATGAATGGTGACTCGTTAATATATCCAAAACGGTTTATAGATAGATGGGCAGAATGGGGGGATTTGTCTCAGATATACAATAATTATGTTCGTCCATCATATCAATTAATACCTGATATAGATTATTCTATGGATATATCAACATTGCGAAATGTTGCTGGCTATATGAGCCATAGTTCGAGTCCAAATGTATTTGTTCAATTTGTTCTCTATGATCATAACAATCTGATGTTCCCCCGTCTCATGCTATATGCAATGGAGAACATCCCTCCATTGAGAGAACTCAGCATAGACTATGGCATCCCTGACGAGTGGGCGGGCAAGCTATCAATAT
Protein sequence

>MS.gene040782.t1

MSTLNPQITPIYTGAPLQTILVPKPKPFEDFFTTQGSQKQPHFPHGYEHNNQPHFPPGYEHKNQSNLYTEYYNIPQPSNATSDKSLYHFLKIDDSNNAFAASMENSVNISDLGLNQNPIMGVDFVDDRIDQSIVPISKKQESCSTVAMVKKKASQMLVRVSDLSMKDQMHRNMMRRTRMTYDSLRVLESIEDEKRIIEEKKLADEVFVEAVKRLVEENMLDEDRIFVSEVAIMEMEMGAGDENMEEVATGVEGEMLNGRRHHNHSRGFIRAARLMKDRKLWLHRDKRIVGSIPGVYVGDVFLYMVELCVIGLHMQIQAGIDFLPKSRSSNGEPIATSVIVSGGYEDDMELDDGDVIINTGHGGRKKNSSIQICDQKLEGGNLALERSMHYGIEITVIRGMKYEGGASSSGKVYVYDGLYRITDCWFEEGMSGFRVFKYKLLRIEGQAKMGSVVLKKAREIKKIGLDVKPMYCLSVDISHKRENVPVRLFNDIDDNQEPLYYEYLPKTTFPWFVFHQSGKATGCECVEACTDGCFCSMKNGGEFPYNLQGLLVKGKPLVFECGPFCSCPPNCRNRVAQKGIKHRLEVFRSAQTGWGVRSLDLIQAGAFICEYTGVILTREQAQILTMNGDSLIYPKRFIDRWAEWGDLSQIYNNYVRPSYQLIPDIDYSMDISTLRNVAGYMSHSSSPNVFVQFVLYDHNNLMFPRLMLYAMENIPPLRELSIDYGIPDEWAGKLSI