AlfalfaGEDB | MS.gene040800

M. sativa cultivar XinJiangDaYe / MS.gene040800

KEGG: -
GO: GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0097159 GO:0110165 GO:1901363
PFAM: PF03110.17

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene040800.t1	XP_003589683.1	97.5	992	22	1	1	992	15	1003	0.00E+00	1882.1

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene040800.t1	Q700C2	46.6	1023	451	18	27	992	4	988	3.8e-230	799.7

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene040800.t1	G7IA23	97.5	992	22	1	1	992	15	1003	0.0e+00	1882.1

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
MS.gene040800.t1	TF	SBP

Showing 1 to 1 of 1 entries

Previous1Next

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network:

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

PPI:

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene040800.t1	MTR_1g035010	97.379	992	23	1	1	992	15	1003	0.0	2002
MS.gene040800.t1	MTR_7g110320	33.833	600	352	13	423	991	415	1000	2.33e-93	319
MS.gene040800.t1	MTR_7g110320	62.698	126	44	1	63	185	112	237	6.87e-40	160
MS.gene040800.t1	MTR_1g086250	33.274	565	343	11	453	991	254	810	8.64e-90	305
MS.gene040800.t1	MTR_1g086250	33.274	565	343	11	453	991	446	1002	6.63e-88	304
MS.gene040800.t1	MTR_1g086250	62.069	116	43	1	63	178	117	231	2.50e-36	149
MS.gene040800.t1	MTR_2g046550	31.904	583	332	18	455	992	228	790	1.86e-84	290
MS.gene040800.t1	MTR_2g046550	31.904	583	332	18	455	992	463	1025	1.47e-82	289
MS.gene040800.t1	MTR_2g046550	54.930	142	58	1	63	198	103	244	2.96e-41	165
MS.gene040800.t1	MTR_7g110320	34.753	446	263	9	423	848	415	852	5.65e-68	244

Showing 1 to 10 of 33 entries

Previous1 2 3 4Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene040800.t1	AT1G20980	49.105	1061	437	25	2	992	8	1035	0.0	881
MS.gene040800.t1	AT1G76580	47.847	1045	435	24	14	992	20	1020	0.0	849
MS.gene040800.t1	AT1G76580	46.373	703	283	19	14	651	20	693	3.66e-173	521
MS.gene040800.t1	AT1G76580	46.362	701	282	19	14	649	20	691	2.48e-172	520
MS.gene040800.t1	AT2G47070	33.574	554	320	13	455	991	229	751	1.32e-86	295
MS.gene040800.t1	AT2G47070	58.025	81	32	1	118	198	2	80	2.12e-20	97.8
MS.gene040800.t1	AT3G60030	35.536	560	308	17	454	991	398	926	1.84e-86	298
MS.gene040800.t1	AT3G60030	56.934	137	55	3	64	198	97	231	1.01e-37	153
MS.gene040800.t1	AT2G47070	33.514	555	321	13	454	991	357	880	1.36e-85	295
MS.gene040800.t1	AT2G47070	41.951	205	81	4	22	198	15	209	2.97e-37	151

Showing 1 to 10 of 44 entries

Previous1 2 3 4 5Next

Find 244 sgRNAs with CRISPR-Local

Find 393 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACAGCGACCTAGAACACT+AGG	0.611826	1.2:-19313367	None:intergenic
AAACCCTTGTGGATGAAAAC+GGG	0.509681	1.2:+19314826	MS.gene040800:CDS
AAACTTAAATCTTGGAAGCA+CGG	0.566490	1.2:+19310031	MS.gene040800:CDS
AAAGCCTCATCCCTTGACTT+GGG	0.557399	1.2:-19313692	None:intergenic
AAAGCTGGTTATGCATCTTC+GGG	0.352663	1.2:+19312081	MS.gene040800:CDS
AAAGCTTCTAAGGCTTTGTT+AGG	0.256564	1.2:+19310197	MS.gene040800:CDS
AAATCCTTAGTTAACGGGGC+AGG	0.442282	1.2:-19311580	None:intergenic
AAATGATGATTCAGATTGCC+AGG	0.494257	1.2:+19311714	MS.gene040800:CDS
AAATTCATCTCCACAACAGG+AGG	0.631154	1.2:-19311877	None:intergenic
AACAACAGTAGAACCACAAC+AGG	0.458871	1.2:+19309995	MS.gene040800:CDS

Showing 1 to 10 of 244 entries

Previous1 2 3 4 5…25Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AAAATACAGACAAGAAGTCA+AGG	-	chr1.2:19314771-19314790	None:intergenic	30.0%
AAACTTAAATCTTGGAAGCA+CGG	+	chr1.2:19310031-19310050	MS.gene040800:CDS	30.0%
AACTTCACTTCTTTGTCTAT+CGG	-	chr1.2:19314922-19314941	None:intergenic	30.0%
AAGAAAATCCTTAGTTAACG+GGG	-	chr1.2:19311587-19311606	None:intergenic	30.0%
AATCAACAATCCAATTACAG+GGG	-	chr1.2:19312912-19312931	None:intergenic	30.0%
AATCCTAAGTTGTAGAGAAA+AGG	-	chr1.2:19314699-19314718	None:intergenic	30.0%
AATTCAGTAAATCCGAATGA+GGG	-	chr1.2:19314196-19314215	None:intergenic	30.0%
AGCCAATTGTAAATCTGAAA+AGG	-	chr1.2:19312480-19312499	None:intergenic	30.0%
AGCTTGTACAAATTCTGAAT+AGG	+	chr1.2:19311425-19311444	MS.gene040800:CDS	30.0%
ATAACTCAGATTCTGATTTC+TGG	+	chr1.2:19312721-19312740	MS.gene040800:CDS	30.0%

Showing 1 to 10 of 393 entries

Previous1 2 3 4 5…40Next

Chromosome	Type	Strat	End	Strand	Name
chr1.2	gene	19309840	19315235	19309840	ID=MS.gene040800
chr1.2	mRNA	19309840	19315235	19309840	ID=MS.gene040800.t1;Parent=MS.gene040800
chr1.2	exon	19309840	19310443	19309840	ID=MS.gene040800.t1.exon1;Parent=MS.gene040800.t1
chr1.2	CDS	19309840	19310443	19309840	ID=cds.MS.gene040800.t1;Parent=MS.gene040800.t1
chr1.2	exon	19311383	19312143	19311383	ID=MS.gene040800.t1.exon2;Parent=MS.gene040800.t1
chr1.2	CDS	19311383	19312143	19311383	ID=cds.MS.gene040800.t1;Parent=MS.gene040800.t1
chr1.2	exon	19312281	19312355	19312281	ID=MS.gene040800.t1.exon3;Parent=MS.gene040800.t1
chr1.2	CDS	19312281	19312355	19312281	ID=cds.MS.gene040800.t1;Parent=MS.gene040800.t1
chr1.2	exon	19312486	19312593	19312486	ID=MS.gene040800.t1.exon4;Parent=MS.gene040800.t1
chr1.2	CDS	19312486	19312593	19312486	ID=cds.MS.gene040800.t1;Parent=MS.gene040800.t1
chr1.2	exon	19312681	19312798	19312681	ID=MS.gene040800.t1.exon5;Parent=MS.gene040800.t1
chr1.2	CDS	19312681	19312798	19312681	ID=cds.MS.gene040800.t1;Parent=MS.gene040800.t1
chr1.2	exon	19313031	19313166	19313031	ID=MS.gene040800.t1.exon6;Parent=MS.gene040800.t1
chr1.2	CDS	19313031	19313166	19313031	ID=cds.MS.gene040800.t1;Parent=MS.gene040800.t1
chr1.2	exon	19313252	19313396	19313252	ID=MS.gene040800.t1.exon7;Parent=MS.gene040800.t1
chr1.2	CDS	19313252	19313396	19313252	ID=cds.MS.gene040800.t1;Parent=MS.gene040800.t1
chr1.2	exon	19313542	19314144	19313542	ID=MS.gene040800.t1.exon8;Parent=MS.gene040800.t1
chr1.2	CDS	19313542	19314144	19313542	ID=cds.MS.gene040800.t1;Parent=MS.gene040800.t1
chr1.2	exon	19314807	19315235	19314807	ID=MS.gene040800.t1.exon9;Parent=MS.gene040800.t1
chr1.2	CDS	19314807	19315235	19314807	ID=cds.MS.gene040800.t1;Parent=MS.gene040800.t1

Gene Sequence

>MS.gene040800

ATGTTATCATCACATCAATTTTACGATTCATCAACCACCAAAAAACGTGATCTATTATCATCATACGACGTCGTTCACATCCAAAACGATAATTGGAACCCTAAAGAATGGAATTGGGACAGTATCCGTTTCATGACAGCAAAATCAACGACGACAACAACAGTAGAACCACAACAGGCCGAAGAATCTCTAAACTTAAATCTTGGAAGCACGGGACAAGTACGAGCAAACAAACGAATCCGTTCAGGATCTCCAACATCGGCTTCATATCCGATGTGTCAAGTTGATAACTGCAAAGAAGATCTATCAAAAGCGAAGGATTATCATCGACGTCATAAGGTGTGTGAAGCTCATAGTAAAGCTTCTAAGGCTTTGTTAGGGAATCAAATGCAACGGTTTTGTCAACAGTGTAGTAGGTTTCATCCGTTGGTGGAGTTTGATGAAGGGAAACGGAGTTGTAGACGGAGACTTGCTGGTCATAATCGGCGTCGGAGGAAAACGCAGCCGGATGAAGTGGCGGTTGGAGGTTCGCCGCCGTTGAATCAGGTTGCTGCTAATTTGGAGATTTTTAACTTGTTGACTGCTATTGCTGATGGTTCTCAAGGTTTGGTTTCTTTGTTTTTTTTTTTTTTTTTTTGAAAGGTCAAGGTTTGGTTTCTATTTTTGGTTCAAAAATTAGTTTTTGATTTAATTTTGTTTGAATAGTAGTTTATATTACTATTTTGGTAGTTATTATGTAAATTTTAGAAATTTGAAACAAATATTTTGTTGGTATTTATTTGAAATAAATAAAAGTAATTTAAAAAAAAAAAGTAAAAATTATGGTGAAATTGCTATATTTATCTGAAGAAGCTAATTAAGTAGTTCTTTTATAGCTAAATTTTGGATCAATAATGTTTTTTTTTTTTTTTTTTTTTTGTGGTGTTAGGATCAATAATTTGTTTCTATAGATCAAATACGTTTTTAGTTTTTTATAATAATTGGAACATGCCCTTAATTTTTTTTTGAAGGAGGAACATGCCCTTAATTGTTATTTACTTTGAATTTTTTTGATCATGAATTGCAATAATTTTGATTTCAATAATTTAGAGATTAATTTGTTGAGTTTTTTAAAGAAAGTTGAAGTTGTGTTGTATTTGTTTATTTGAATGAAAATAATTCTATCTTAAAAATCAGTTATGAATGTGAAAAATGTTTTTTTTTTTGTTGAGAAGCTACAGAAAGCAGCTTCTAATTTGAAACAGTTTTTAGACTTTTTTTTTTCTTTCCTTTATCAGATTCTCAATTTTGAAAATTTGCAAGAAACGAATGAAACTTCTAAAAGTGATAATTTTGTTAAAAAAACTCGATTTTTTCAAAATAAAATTTGTAACAAACAGACTCTAATTTATTTTTTAGAAGTAATTATTTTTCTTAATTTTCGAAAATCGTTTCTAGGAAAAATAAACATAAACTAACAAGCAAGTAAGCAAGTGCTACTTGAGATTGTTTTTTCTTTTCTTTTGTGTGGGCTAATATTGTTTGGTTTGATTATATTGTATAGGAAAATTTGAGGAAAGAAGGTCACAAGTTCCAGATAAAGAACAGCTTGTACAAATTCTGAATAGGATCCCTTTACCCGCTGATCTTACTGCAAAATTGCTGGATGTTGGTAATAATTTGAATGCGAAAAATGATAATGTCCAAATGCAAACTTCACCCTCCTATCATCATCGCGATGATCAACCAAACAACACCCCCCCTGCCCCGTTAACTAAGGATTTTCTTGCTGTTCTTTCCACAACTCCATCAACACCTGCTCAAAATGGCGGCAACGGGTCCACAAGTAGTGCAGATCATATGAGAGAAAGAAGCAGTGGCAGTTCTCAGTCTCCAAATGATGATTCAGATTGCCAGGAGGATGTTCGAGTTAAATTGCCGCTGCAACTTTTTGGCTCCTCTCCAGAAAATGACAGCCCATCGAAATTGCCATCTTCGCGAAAGTATTTTTCATCGGAAAGTAGTAATCCTGTGGATGAAAGGTCGCCGTCTTCATCTCCTCCTGTTGTGGAGATGAATTTTGGTCTGCAAGGTGGTATTAGAGGTCTCAATTCTAATGGTATTTTGACTGGATTTGGAGGCCATGCAAATAAGGAAACTAGCCAAAGTCATAGTTGTACTACTATCCCTCTTGATCTCTTTAAAGGGTCAAAATCAAATAACATGATTCAACAATCTAGTTCAGTTCAAAGTGTACCATTTAAAGCTGGTTATGCATCTTCGGGTTCTGATTATTCACCTCCCAGTTTGAATTCAGATACTCAGGTTGGGATTTTGCAAACCCTGGTTCATGCTTGCTTTGAATTTGTACTTTGCTTTATATATGTTCTTATTCTTTTAATTAAGAGGCTTAGCCATTTTGTCTTTTGGGTTTTAATCTATTTGTGATGGTATTCCTACAGGATCGTACTGGGAGAATAATGTTTAAATTGTTTGACAAGCATCCTAGCCATTTCCCAGGAACGCTGCGAACACAGGTGAAATTATTGTTGCACTTTCCCATTAATATTTTGCGAATCGGATGATGTCATTTTAATGAATATGGCAAAATGTCCTTCACCAGATGCAAAGACGTGTTAGTATTCATAATCATTTTGTCCTTTTCAGATTTACAATTGGCTTTCTACACGACCATCAGACTTGGAGAGTTACATAAGGCCCGGCTGTGTTGTCCTATCAATTTATGCTTCAATGTCTTCTGCTGCTTGGGTGCAAGTAAGCGAACTTCTATGAATAGTGATGCACGTTTTGAGCTTGTAGAATTCTCCTTGCTGATTACTTGCATATTGTATTTTTTTGCAGTTAGAAGAAAACTTCGTCCAACGTGTTGATTCTTTAATTCATAACTCAGATTCTGATTTCTGGAGAAATGGAAGATTTCTTGTTTATTCTGGCAGTCAGTTAGCATCACACAAAGATGGTGAGCACTGTGACTAGTTTTGATTTCTGACTGGTTTCGATCACTTTTTTTTTATCTTAGGCCTCATATTTTTATATTCGTGTAACTTTTGGAGGTTGTACTAATTTTCCCCCCTGTAATTGGATTGTTGATTACTGATTTTAAAACAAACTTTAGACGGTTAAATATGCCATCATAGCTAGATTTTTATTATCAAGGAGTTGAATCTGATAGATTTAAACTGAAATTCCAGGAAGGATACGCATGTGCAAACCATGGGGAACGTGGAGGTCTCCAGAGTTGATATCAGTGTCTCCTTTGGCAATTGTCGGTGGACAGGAGACTTCTATTTCATTGAAGGGAAGAAACCTCTCTGCTCCTGGCACAAAGTTAGTACTGATTTTCCCCTTTTCTGGACGTTGTGTTATGCTTCTTTCTGGTCTGTTCGCTTACTGTTTGTCCTAAATTTTGCAGGATTCATTGCACTGATGCTGACTGTTATACATCATCAGAAGTTATAGGATCAGGAGATCCTGGTATGGTCTATGATGAGATAAAATTGAGTGGTTTTGAAGTTCAGAATACATCTCCTAGTGTTCTAGGTCGCTGTTTCATTGAGGTATATCTCTACATTCTATTGACTGCACATGATTACTGTGATGGTTGCATATGCTTGCATGTCTTGAAAATTTTCATGTACATGAAGTATATATTTGTGAACTTCTATTAAAAATAATAATTGCAAATTACATGTTTGTGAACAGGTTGAAAATGGTTTCAAGGGAAACAGTTTTCCAGTGATAATAGCCAATGCATCCATTTGCAAGGAGTTGAGACCGCTTGAGTCTGAATTTGACGAGGATGAAAAGATGTGTGATGCCATTTCAGAGGAGCATGAACATAATTTTGGGAGGCCCAAGTCAAGGGATGAGGCTTTGCACTTTTTGAATGAGCTTGGTTGGCTGTTTCAAAGGGAAAGGTTCTCGAATGTGAACGAGGTTCCAGATTATTCGCTCGACAGGTTCAAATTTGTACTGACGTTTTCTGTGGAAAGAAACTGTTGCATGTTGGTCAAAACCCTTCTGGATATACTGGTTGATAAACACTTCGAAGGAGAAGGGTTGTCAACAGGGTCAGTGGAGATGCTGAAAGCAATCCAACTTCTAAATAGAGCAGTGAAAAGAAAGTGCACAAGCATGGTTGATTTGCTCATTAACTATTCTATAACTAGCAAAAATGACACATCCAAGAAATATGTATTTCCACCGAATCTTGAGGGCCCTGGCGGTATTACTCCCTTGCATTTGGCAGCATCTACAACGGATTCTGAGGGTGTAATTGACTCTTTAACAAATGATCCACAGGAGGTAAATATTTCCCCCCTACTTTGACAAAAAAGTTACTAGAGGAAATGTCCCTCATTCGGATTTACTGAATTGTTTTTGCTGAGTATCAAAAATAGTCTAATTGGATTGCCTATGGTTTTTATGGGGTTTAAATAGGTCATGCATGTCAGTCAACAGGGGGGACCTACTGCCTAGTATATGTTAGGCCAGACTGTGTCAGAGTTTTTTTTATAGACAAGTGGCTTTTTGAAAAGTCTATTTAGCTGAAAATGACAAGTTATTATACATATCTTATAAATCCTCTTGTGCCTAACAGGCTTGGCTATTTAAATAAATTTGAAGGATTTTTTTTATAATGTTGTCAAAAAGAAGAACAAAGGATTTTGATGTGTTAACAATCTAATACTTTATACCATTCTAAAGATTTAAGCATATCGACCTACATAAAAGAATTAAATCTATGAATTTTTTAGTGATAAATTTTGAAGACCTTATCAACCTTAAAGTATGTCCTTGTCAGCCTACTTAGAATATAAATCAGTAGTTATCATGTTGTTTGGACTTCAACTCATCCTTTTCTCTACAACTTAGGATTATATTTCAATTTACATTAATGATGTTTGCATGCTTCTATTTTATTGAGTCCTTGACTTCTTGTCTGTATTTTTTATGCTGGTGTGTAGATTGGGTTGAAGTGCTGGGAAACCCTTGTGGATGAAAACGGGCAGACTCCACATGCCTATGCCATGATGAGAAATAATCACTCTTATAATATGTTGGTTGCCCGTAAACGTTCCGATAGACAAAGAAGTGAAGTTTCAGTTAGAATTGATAATGAGATAGAGCACCCATCACCGGGAATTGAGCTAATGCAAAAGCGAATTAACCAAGTCAAACGAGTTGGGGACTCCTGTTCCAAGTGTGCAATTGCAGAAGTTCGCGCCAAAAGAAGATTTTCCGGTTCACGGAGCTGGCTTCACGGTCCCTTTATTCATTCGATGCTAGCTGTTGCTGCTGTTTGTGTATGTGTTTGTGTGTTATTCCGTGGAACCCCTTATGTAGGCTCAGTTTCTCCCTTCAGGTGGGAAAACTTGAATTATGGCACAATGTAA

Protein sequence

>MS.gene040800.t1

MLSSHQFYDSSTTKKRDLLSSYDVVHIQNDNWNPKEWNWDSIRFMTAKSTTTTTVEPQQAEESLNLNLGSTGQVRANKRIRSGSPTSASYPMCQVDNCKEDLSKAKDYHRRHKVCEAHSKASKALLGNQMQRFCQQCSRFHPLVEFDEGKRSCRRRLAGHNRRRRKTQPDEVAVGGSPPLNQVAANLEIFNLLTAIADGSQGKFEERRSQVPDKEQLVQILNRIPLPADLTAKLLDVGNNLNAKNDNVQMQTSPSYHHRDDQPNNTPPAPLTKDFLAVLSTTPSTPAQNGGNGSTSSADHMRERSSGSSQSPNDDSDCQEDVRVKLPLQLFGSSPENDSPSKLPSSRKYFSSESSNPVDERSPSSSPPVVEMNFGLQGGIRGLNSNGILTGFGGHANKETSQSHSCTTIPLDLFKGSKSNNMIQQSSSVQSVPFKAGYASSGSDYSPPSLNSDTQDRTGRIMFKLFDKHPSHFPGTLRTQIYNWLSTRPSDLESYIRPGCVVLSIYASMSSAAWVQLEENFVQRVDSLIHNSDSDFWRNGRFLVYSGSQLASHKDGRIRMCKPWGTWRSPELISVSPLAIVGGQETSISLKGRNLSAPGTKIHCTDADCYTSSEVIGSGDPGMVYDEIKLSGFEVQNTSPSVLGRCFIEVENGFKGNSFPVIIANASICKELRPLESEFDEDEKMCDAISEEHEHNFGRPKSRDEALHFLNELGWLFQRERFSNVNEVPDYSLDRFKFVLTFSVERNCCMLVKTLLDILVDKHFEGEGLSTGSVEMLKAIQLLNRAVKRKCTSMVDLLINYSITSKNDTSKKYVFPPNLEGPGGITPLHLAASTTDSEGVIDSLTNDPQEIGLKCWETLVDENGQTPHAYAMMRNNHSYNMLVARKRSDRQRSEVSVRIDNEIEHPSPGIELMQKRINQVKRVGDSCSKCAIAEVRAKRRFSGSRSWLHGPFIHSMLAVAAVCVCVCVLFRGTPYVGSVSPFRWENLNYGTM