AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene040801

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene040801.t1 MTR_1g047060 51.515 99 39 2 112 210 3 92 2.19e-24 92.8
MS.gene040801.t1 MTR_6g477900 32.911 158 82 7 4 146 6 154 3.55e-18 80.1
MS.gene040801.t1 MTR_2g086880 28.311 219 126 9 6 206 20 225 6.41e-18 82.0
MS.gene040801.t1 MTR_2g086880 28.311 219 126 9 6 206 20 225 8.07e-18 81.6
MS.gene040801.t1 MTR_1g008740 34.395 157 85 6 2 146 25 175 9.82e-18 80.9
MS.gene040801.t1 MTR_1g008740 34.395 157 85 6 2 146 11 161 1.32e-17 80.1
MS.gene040801.t1 MTR_4g101680 34.395 157 80 6 4 146 7 154 2.77e-17 79.3
MS.gene040801.t1 MTR_5g012080 33.333 159 81 8 4 146 7 156 3.72e-17 79.0
MS.gene040801.t1 MTR_4g094302 30.481 187 105 8 4 176 11 186 1.39e-16 75.1
MS.gene040801.t1 MTR_3g064580 34.375 160 78 8 4 146 6 155 2.96e-16 77.0
MS.gene040801.t1 MTR_3g109340 33.121 157 86 6 2 146 20 169 3.76e-16 76.3
MS.gene040801.t1 MTR_5g021710 32.468 154 87 5 4 146 8 155 3.84e-16 76.3
MS.gene040801.t1 MTR_5g041940 30.625 160 85 6 4 146 3 153 4.62e-16 75.1
MS.gene040801.t1 MTR_7g100990 28.230 209 129 7 4 204 11 206 4.78e-16 75.9
MS.gene040801.t1 MTR_4g036030 33.758 157 81 7 4 146 7 154 5.99e-16 75.5
MS.gene040801.t1 MTR_1g096430 31.288 163 92 6 1 149 1 157 6.89e-16 75.5
MS.gene040801.t1 MTR_3g093040 29.891 184 91 10 4 168 108 272 1.72e-15 73.9
MS.gene040801.t1 MTR_4g094302 34.109 129 76 5 4 132 11 130 1.78e-15 71.2
MS.gene040801.t1 MTR_4g081870 30.625 160 85 7 4 146 9 159 4.30e-15 72.4
MS.gene040801.t1 MTR_2g064090 30.573 157 88 7 4 146 6 155 4.51e-15 73.2
MS.gene040801.t1 MTR_2g093810 30.818 159 86 5 4 145 14 165 6.61e-15 72.4
MS.gene040801.t1 MTR_2g080010 30.488 164 93 5 4 161 15 163 9.13e-15 72.4
MS.gene040801.t1 MTR_8g059170 32.075 159 82 7 4 146 14 162 1.51e-14 71.6
MS.gene040801.t1 MTR_3g109340 31.410 156 89 6 2 146 20 168 2.22e-14 71.2
MS.gene040801.t1 MTR_2g079990 31.847 157 83 7 4 146 16 162 2.58e-14 70.9
MS.gene040801.t1 MTR_7g105170 28.485 165 96 7 1 146 1 162 3.05e-14 69.7
MS.gene040801.t1 MTR_4g089135 33.088 136 78 4 4 133 15 143 3.19e-14 70.9
MS.gene040801.t1 MTR_5g069030 30.909 165 82 9 1 146 22 173 4.14e-14 70.9
MS.gene040801.t1 MTR_6g011860 26.638 229 132 9 1 206 12 227 5.38e-14 70.1
MS.gene040801.t1 MTR_8g023930 28.571 175 110 5 2 167 22 190 5.44e-14 70.5
MS.gene040801.t1 MTR_6g084430 31.818 154 85 6 4 146 5 149 8.81e-14 69.3
MS.gene040801.t1 MTR_3g096140 30.818 159 86 6 3 146 6 155 1.17e-13 68.6
MS.gene040801.t1 MTR_3g096140 30.818 159 86 6 3 146 6 155 2.37e-13 68.2
MS.gene040801.t1 MTR_8g023900 29.487 156 91 6 2 145 10 158 3.32e-13 68.2
MS.gene040801.t1 MTR_8g023900 27.604 192 112 9 7 184 196 374 8.35e-11 61.2
MS.gene040801.t1 MTR_8g023840 28.421 190 115 8 4 182 11 190 4.68e-13 67.4
MS.gene040801.t1 MTR_8g467490 27.976 168 90 7 2 146 12 171 5.05e-13 67.4
MS.gene040801.t1 MTR_1g097300 32.653 147 79 6 6 144 21 155 5.33e-13 67.8
MS.gene040801.t1 MTR_3g088110 30.000 160 86 6 4 147 7 156 7.10e-13 66.2
MS.gene040801.t1 MTR_4g098630 32.911 158 85 10 4 146 6 157 2.38e-12 65.1
MS.gene040801.t1 MTR_2g079990 32.394 142 79 6 4 138 16 147 2.50e-12 65.5
MS.gene040801.t1 MTR_3g116070 29.054 148 91 5 4 144 23 163 2.63e-12 65.1
MS.gene040801.t1 MTR_1g090723 28.205 156 90 7 6 147 10 157 8.82e-12 63.9
MS.gene040801.t1 MTR_1g090723 28.205 156 90 7 6 147 10 157 1.04e-11 63.9
MS.gene040801.t1 MTR_1g090720 32.099 162 84 6 4 146 42 196 1.10e-11 63.5
MS.gene040801.t1 MTR_4g075980 31.126 151 86 7 6 146 17 159 1.19e-11 63.2
MS.gene040801.t1 MTR_8g024480 26.147 218 113 9 4 190 15 215 2.15e-11 62.8
MS.gene040801.t1 MTR_2157s0010 26.471 204 108 10 4 175 8 201 2.27e-11 62.0
MS.gene040801.t1 MTR_0036s0150 27.273 154 94 6 6 147 7 154 3.70e-11 62.0
MS.gene040801.t1 MTR_1g090723 27.389 157 91 7 6 147 10 158 4.30e-11 62.0
MS.gene040801.t1 MTR_8g093580 29.560 159 86 7 4 146 6 154 6.05e-11 61.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene040801.t1 AT3G17730 33.544 158 81 8 4 146 6 154 8.27e-19 82.0
MS.gene040801.t1 AT2G24430 36.306 157 81 6 2 146 14 163 1.73e-18 82.4
MS.gene040801.t1 AT2G24430 36.306 157 81 6 2 146 14 163 1.73e-18 82.4
MS.gene040801.t1 AT2G27300 30.822 146 91 4 4 145 14 153 5.49e-18 81.3
MS.gene040801.t1 AT1G12260 36.306 157 77 8 4 146 7 154 6.77e-18 80.9
MS.gene040801.t1 AT1G12260 36.306 157 77 8 4 146 7 154 1.29e-17 80.9
MS.gene040801.t1 AT5G62380 32.143 196 91 9 4 168 7 191 3.37e-17 79.3
MS.gene040801.t1 AT5G62380 32.143 196 91 9 4 168 7 191 3.37e-17 79.3
MS.gene040801.t1 AT3G44290 29.167 144 92 4 6 145 16 153 6.53e-17 76.6
MS.gene040801.t1 AT3G10490 33.758 157 83 6 4 146 27 176 7.59e-17 76.6
MS.gene040801.t1 AT4G36160 32.468 154 87 5 4 146 10 157 9.21e-17 78.2
MS.gene040801.t1 AT4G36160 32.468 154 87 5 4 146 10 157 9.21e-17 78.2
MS.gene040801.t1 AT4G36160 32.468 154 87 5 4 146 14 161 9.31e-17 78.2
MS.gene040801.t1 AT1G62700 34.395 157 80 7 4 146 7 154 9.60e-17 78.2
MS.gene040801.t1 AT1G62700 34.395 157 80 7 4 146 7 154 9.60e-17 78.2
MS.gene040801.t1 AT1G76420 32.075 159 83 6 4 147 22 170 1.29e-16 77.4
MS.gene040801.t1 AT1G71930 31.210 157 91 5 4 149 9 159 2.15e-16 76.6
MS.gene040801.t1 AT1G71930 31.210 157 91 5 4 149 9 159 2.15e-16 76.6
MS.gene040801.t1 AT4G27410 32.099 162 86 7 4 151 14 165 2.77e-16 76.3
MS.gene040801.t1 AT3G44290 29.167 144 92 4 6 145 16 153 2.89e-16 76.3
MS.gene040801.t1 AT3G10490 33.758 157 83 6 4 146 27 176 4.83e-16 76.3
MS.gene040801.t1 AT2G18060 31.818 154 88 5 4 146 9 156 5.65e-16 75.9
MS.gene040801.t1 AT2G18060 31.818 154 88 5 4 146 9 156 5.65e-16 75.9
MS.gene040801.t1 AT1G65910 32.704 159 81 7 4 146 6 154 6.10e-16 76.3
MS.gene040801.t1 AT5G22290 31.034 145 89 5 6 145 23 161 9.30e-16 75.1
MS.gene040801.t1 AT3G10480 33.758 157 83 6 4 146 27 176 1.02e-15 75.5
MS.gene040801.t1 AT4G17980 31.056 161 83 6 4 145 6 157 1.42e-15 73.6
MS.gene040801.t1 AT4G17980 31.056 161 83 6 4 145 6 157 1.81e-15 73.9
MS.gene040801.t1 AT5G66300 31.646 158 84 7 4 146 12 160 3.61e-15 72.8
MS.gene040801.t1 AT4G27410 30.114 176 88 7 4 151 14 182 4.73e-15 72.8
MS.gene040801.t1 AT1G69490 30.000 160 86 6 4 146 9 159 4.81e-15 72.4
MS.gene040801.t1 AT3G10480 33.333 156 84 6 4 146 27 175 5.08e-15 73.6
MS.gene040801.t1 AT5G17260 30.380 158 87 7 4 146 6 155 5.26e-15 73.6
MS.gene040801.t1 AT1G26870 29.508 183 96 6 2 162 14 185 7.54e-15 72.8
MS.gene040801.t1 AT1G54330 30.719 153 89 6 4 146 6 151 1.26e-14 71.6
MS.gene040801.t1 AT5G39610 31.646 158 84 7 4 146 20 168 1.42e-14 71.2
MS.gene040801.t1 AT2G02450 30.814 172 98 6 3 162 50 212 2.96e-14 70.9
MS.gene040801.t1 AT1G33280 32.051 156 84 7 4 146 8 154 3.33e-14 70.5
MS.gene040801.t1 AT2G02450 30.814 172 98 6 3 162 50 212 3.95e-14 70.9
MS.gene040801.t1 AT5G08790 31.361 169 86 8 4 153 7 164 4.19e-14 69.7
MS.gene040801.t1 AT3G10500 32.692 156 85 6 4 146 9 157 4.31e-14 70.9
MS.gene040801.t1 AT5G24590 30.435 161 83 8 4 146 13 162 4.33e-14 70.9
MS.gene040801.t1 AT3G29035 30.864 162 87 7 4 150 24 175 1.31e-13 68.9
MS.gene040801.t1 AT3G15500 31.250 160 80 7 4 146 14 160 1.58e-13 68.6
MS.gene040801.t1 AT3G18400 32.692 156 84 9 4 147 5 151 1.61e-13 68.6
MS.gene040801.t1 AT5G04410 30.380 158 86 6 4 146 9 157 1.77e-13 68.9
MS.gene040801.t1 AT1G32510 30.061 163 88 7 3 145 5 161 2.04e-13 67.8
MS.gene040801.t1 AT1G52890 31.250 160 80 7 4 146 14 160 3.07e-13 67.8
MS.gene040801.t1 AT5G46590 32.374 139 80 6 4 135 6 137 3.23e-13 67.4
MS.gene040801.t1 AT4G35580 29.762 168 86 9 1 149 6 160 3.27e-13 68.2
MS.gene040801.t1 AT4G35580 29.762 168 86 9 1 149 6 160 3.46e-13 68.2
MS.gene040801.t1 AT4G35580 29.762 168 86 9 1 149 6 160 3.48e-13 68.2
MS.gene040801.t1 AT5G04395 32.886 149 79 6 4 135 28 172 5.74e-13 65.1
MS.gene040801.t1 AT5G61430 29.448 163 91 6 4 151 16 169 6.13e-13 67.0
MS.gene040801.t1 AT5G64530 28.866 194 104 6 4 176 3 183 7.64e-13 65.1
MS.gene040801.t1 AT5G50820 33.824 136 75 6 4 135 17 141 1.13e-12 64.7
MS.gene040801.t1 AT3G15510 27.950 161 85 5 10 146 23 176 1.17e-12 66.2
MS.gene040801.t1 AT5G64530 34.848 132 67 6 4 132 3 118 1.87e-12 63.2
MS.gene040801.t1 AT5G39820 34.058 138 76 5 2 132 18 147 1.87e-12 65.5
MS.gene040801.t1 AT3G12977 28.571 175 101 7 4 163 18 183 1.94e-12 65.1
MS.gene040801.t1 AT5G09330 30.189 159 85 6 4 146 6 154 1.98e-12 65.9
MS.gene040801.t1 AT5G09330 30.189 159 85 6 4 146 6 154 1.98e-12 65.9
MS.gene040801.t1 AT5G09330 30.189 159 85 6 4 146 6 154 1.98e-12 65.9
MS.gene040801.t1 AT5G09330 30.189 159 85 6 4 146 6 154 1.98e-12 65.9
MS.gene040801.t1 AT5G09330 30.189 159 85 6 4 146 6 154 1.98e-12 65.9
MS.gene040801.t1 AT5G64060 27.556 225 121 9 4 207 6 209 2.23e-12 65.5
MS.gene040801.t1 AT5G07680 29.878 164 89 7 4 151 17 170 3.68e-12 64.7
MS.gene040801.t1 AT5G07680 29.878 164 89 7 4 151 3 156 4.17e-12 64.3
MS.gene040801.t1 AT3G04060 30.818 159 85 7 4 146 20 169 6.25e-12 64.3
MS.gene040801.t1 AT2G46770 27.273 209 113 8 4 182 16 215 9.34e-12 63.5
MS.gene040801.t1 AT5G18270 32.075 159 83 8 4 146 21 170 1.79e-11 62.8
MS.gene040801.t1 AT5G18270 32.075 159 83 8 4 146 21 170 1.97e-11 62.8

Find 56 sgRNAs with CRISPR-Local

Find 73 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGGATTTGGACTCTGAATTT+AGG 0.147046 1.2:+19281874 MS.gene040801:CDS
CCATGGTTCTGACCTGATTA+AGG 0.246294 1.2:+19281412 MS.gene040801:CDS
CCTCCTCTGCTCATCAGTTT+TGG 0.253784 1.2:-19281525 None:intergenic
GAAGGAACTCAGCAACTTAA+AGG 0.268437 1.2:+19281957 MS.gene040801:CDS
GGATTTGGACTCTGAATTTA+GGG 0.295087 1.2:+19281875 MS.gene040801:CDS
CCTTGTGTGAGGGAAGAAAA+AGG 0.358153 1.2:-19281483 None:intergenic
GGCTACTCAAGCCACTATTT+AGG 0.370350 1.2:+19282046 MS.gene040801:CDS
CCACCCTAGAGGGATGGATT+TGG 0.381002 1.2:+19281860 MS.gene040801:CDS
GGCATTGTAAGACTGGATTC+TGG 0.399311 1.2:+19281546 MS.gene040801:CDS
GATTTGCTTCCACCTGGTGC+TGG 0.403266 1.2:+19281317 MS.gene040801:CDS
CTCAGCAACTTAAAGGGGCT+GGG 0.408676 1.2:+19281964 MS.gene040801:CDS
ACAGGTTCAGCTCCTTAATC+AGG 0.411998 1.2:-19281424 None:intergenic
AAGGAACTCAGCAACTTAAA+GGG 0.416136 1.2:+19281958 MS.gene040801:CDS
AGGTGATGCATCGCGGTTCA+TGG 0.440949 1.2:+19282025 MS.gene040801:CDS
TCTAGTGATGGTGCTTGTGC+TGG 0.455178 1.2:+19281993 MS.gene040801:CDS
ACTCAGCAACTTAAAGGGGC+TGG 0.463888 1.2:+19281963 MS.gene040801:CDS
GCAATTCAAATGGATCATAC+TGG 0.470518 1.2:-19281448 None:intergenic
TGAGCAAGATGCAATTCAAA+TGG 0.471704 1.2:-19281458 None:intergenic
CAGAGGAGGCATTGTAAGAC+TGG 0.471934 1.2:+19281539 MS.gene040801:CDS
GCTTGTGCTGGTGCTGAGCA+AGG 0.479778 1.2:+19282005 MS.gene040801:CDS
AAAACACGGCAAACAACAAA+AGG 0.482067 1.2:-19281834 None:intergenic
AATATATGTTACCTAAATAG+TGG 0.484280 1.2:-19282057 None:intergenic
CAAATGGATCATACTGGTAC+AGG 0.492656 1.2:-19281442 None:intergenic
GAGTCCAAATCCATCCCTCT+AGG 0.501503 1.2:-19281864 None:intergenic
GAAGATGTTCAGAATTTCCA+TGG 0.508550 1.2:+19281395 MS.gene040801:CDS
TGGAGCTGATGACGTGTTGG+TGG 0.510033 1.2:+19281601 MS.gene040801:CDS
GCTGTCAGAGACATTACTGC+TGG 0.527123 1.2:+19281581 MS.gene040801:CDS
TCTGATGACAAGGCGAATGA+AGG 0.528665 1.2:+19281939 MS.gene040801:CDS
GCAATGGATTTGCTTCCACC+TGG 0.532019 1.2:+19281311 None:intergenic
AGAACGCGATCAAAACTAGC+TGG 0.546737 1.2:+19281666 MS.gene040801:CDS
CACTCTTGTTAACAACCCTC+AGG 0.546751 1.2:+19281703 MS.gene040801:CDS
ACCTTCACCTACATCAGATA+AGG 0.551670 1.2:-19281898 None:intergenic
TCAGCAACTTAAAGGGGCTG+GGG 0.554378 1.2:+19281965 MS.gene040801:CDS
TTTAGGGCCTTATCTGATGT+AGG 0.555385 1.2:+19281891 MS.gene040801:CDS
TGCTGGAGCTGATGACGTGT+TGG 0.559512 1.2:+19281598 MS.gene040801:CDS
GAAGGGACGAAGCCAGCACC+AGG 0.569334 1.2:-19281329 None:intergenic
CAGTAAAACTCCCTTGTGTG+AGG 0.577220 1.2:-19281494 None:intergenic
GACTGGATTCTGGATGCAGA+AGG 0.580380 1.2:+19281556 MS.gene040801:CDS
CCAAAACTGATGAGCAGAGG+AGG 0.581988 1.2:+19281525 MS.gene040801:CDS
AGTCCAAATCCATCCCTCTA+GGG 0.582948 1.2:-19281863 None:intergenic
TGGCAAGGTAATAGCTAACA+AGG 0.592858 1.2:-19281361 None:intergenic
GCTGGGGCTAGTTCTAGTGA+TGG 0.596249 1.2:+19281981 MS.gene040801:CDS
GCCTTATCTGATGTAGGTGA+AGG 0.597039 1.2:+19281897 MS.gene040801:CDS
AGTAAAACTCCCTTGTGTGA+GGG 0.603789 1.2:-19281493 None:intergenic
GTAGGTGAAGGTGATGCTGC+TGG 0.606109 1.2:+19281909 MS.gene040801:CDS
ACTGGATTCTGGATGCAGAA+GGG 0.607334 1.2:+19281557 MS.gene040801:CDS
CCTTAATCAGGTCAGAACCA+TGG 0.626777 1.2:-19281412 None:intergenic
AGGAACTCAGCAACTTAAAG+GGG 0.629259 1.2:+19281959 MS.gene040801:CDS
TAACAAGGAGTTCATCAGAA+GGG 0.633655 1.2:-19281346 None:intergenic
GGGACGAAGCCAGCACCAGG+TGG 0.645386 1.2:-19281326 None:intergenic
GGAGCTGATGACGTGTTGGT+GGG 0.653652 1.2:+19281602 MS.gene040801:CDS
TGGTGACGACTCTGATGACA+AGG 0.654982 1.2:+19281929 MS.gene040801:CDS
CTGCCAAAACTGATGAGCAG+AGG 0.655541 1.2:+19281522 MS.gene040801:CDS
CTAACAAGGAGTTCATCAGA+AGG 0.667376 1.2:-19281347 None:intergenic
CCAAATCCATCCCTCTAGGG+TGG 0.667792 1.2:-19281860 None:intergenic
CTGAGCAAGGTGATGCATCG+CGG 0.677590 1.2:+19282018 MS.gene040801:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTATATAAATAATTGTGC+AGG + chr1.2:19281809-19281828 MS.gene040801:intron 15.0%
!! TCGATGATTAATTAATGTAT+TGG + chr1.2:19281770-19281789 MS.gene040801:intron 20.0%
!! TCTCTCTTCTTTTTCTATAT+AGG + chr1.2:19281632-19281651 MS.gene040801:CDS 25.0%
!!! AACATCTTCATTGTTTTTGT+TGG - chr1.2:19281384-19281403 None:intergenic 25.0%
! ATCGATTGAATAAAGAGTGT+AGG - chr1.2:19281755-19281774 None:intergenic 30.0%
! TCGATTGAATAAAGAGTGTA+GGG - chr1.2:19281754-19281773 None:intergenic 30.0%
AAAACACGGCAAACAACAAA+AGG - chr1.2:19281837-19281856 None:intergenic 35.0%
AAGGAACTCAGCAACTTAAA+GGG + chr1.2:19281958-19281977 MS.gene040801:CDS 35.0%
GAAGATGTTCAGAATTTCCA+TGG + chr1.2:19281395-19281414 MS.gene040801:CDS 35.0%
GCAATTCAAATGGATCATAC+TGG - chr1.2:19281451-19281470 None:intergenic 35.0%
GGATTTGGACTCTGAATTTA+GGG + chr1.2:19281875-19281894 MS.gene040801:CDS 35.0%
TAACAAGGAGTTCATCAGAA+GGG - chr1.2:19281349-19281368 None:intergenic 35.0%
TGAGCAAGATGCAATTCAAA+TGG - chr1.2:19281461-19281480 None:intergenic 35.0%
TGGATTTGGACTCTGAATTT+AGG + chr1.2:19281874-19281893 MS.gene040801:CDS 35.0%
!!! CTTCATTGTTTTTGTTGGCA+AGG - chr1.2:19281379-19281398 None:intergenic 35.0%
ACCTTCACCTACATCAGATA+AGG - chr1.2:19281901-19281920 None:intergenic 40.0%
AGGAACTCAGCAACTTAAAG+GGG + chr1.2:19281959-19281978 MS.gene040801:CDS 40.0%
AGTAAAACTCCCTTGTGTGA+GGG - chr1.2:19281496-19281515 None:intergenic 40.0%
CAAATGGATCATACTGGTAC+AGG - chr1.2:19281445-19281464 None:intergenic 40.0%
CTAACAAGGAGTTCATCAGA+AGG - chr1.2:19281350-19281369 None:intergenic 40.0%
GAAGGAACTCAGCAACTTAA+AGG + chr1.2:19281957-19281976 MS.gene040801:CDS 40.0%
TGGCAAGGTAATAGCTAACA+AGG - chr1.2:19281364-19281383 None:intergenic 40.0%
TTCCCAAATGACATACCTGA+GGG - chr1.2:19281721-19281740 None:intergenic 40.0%
TTTCCCAAATGACATACCTG+AGG - chr1.2:19281722-19281741 None:intergenic 40.0%
! AACCCTCAGGTATGTCATTT+GGG + chr1.2:19281716-19281735 MS.gene040801:intron 40.0%
! CTTTTTCTTCCCTCACACAA+GGG + chr1.2:19281484-19281503 MS.gene040801:CDS 40.0%
! TTTAGGGCCTTATCTGATGT+AGG + chr1.2:19281891-19281910 MS.gene040801:CDS 40.0%
!!! TAGTTTTGATCGCGTTCTGA+GGG - chr1.2:19281664-19281683 None:intergenic 40.0%
ACAGGTTCAGCTCCTTAATC+AGG - chr1.2:19281427-19281446 None:intergenic 45.0%
ACTGGATTCTGGATGCAGAA+GGG + chr1.2:19281557-19281576 MS.gene040801:CDS 45.0%
AGAACGCGATCAAAACTAGC+TGG + chr1.2:19281666-19281685 MS.gene040801:CDS 45.0%
AGTCCAAATCCATCCCTCTA+GGG - chr1.2:19281866-19281885 None:intergenic 45.0%
CAACCCTCAGGTATGTCATT+TGG + chr1.2:19281715-19281734 MS.gene040801:intron 45.0%
CACTCTTGTTAACAACCCTC+AGG + chr1.2:19281703-19281722 MS.gene040801:CDS 45.0%
CAGTAAAACTCCCTTGTGTG+AGG - chr1.2:19281497-19281516 None:intergenic 45.0%
CCTTAATCAGGTCAGAACCA+TGG - chr1.2:19281415-19281434 None:intergenic 45.0%
CCTTGTGTGAGGGAAGAAAA+AGG - chr1.2:19281486-19281505 None:intergenic 45.0%
GCCTTATCTGATGTAGGTGA+AGG + chr1.2:19281897-19281916 MS.gene040801:CDS 45.0%
GGCATTGTAAGACTGGATTC+TGG + chr1.2:19281546-19281565 MS.gene040801:CDS 45.0%
TCTGATGACAAGGCGAATGA+AGG + chr1.2:19281939-19281958 MS.gene040801:CDS 45.0%
! CCTTTTTCTTCCCTCACACA+AGG + chr1.2:19281483-19281502 MS.gene040801:CDS 45.0%
!! AGTTTTGATCGCGTTCTGAG+GGG - chr1.2:19281663-19281682 None:intergenic 45.0%
!! CCATGGTTCTGACCTGATTA+AGG + chr1.2:19281412-19281431 MS.gene040801:CDS 45.0%
!! CTCTAGGGTGGTCAAAAACA+CGG - chr1.2:19281851-19281870 None:intergenic 45.0%
!! GTGTTTTTGACCACCCTAGA+GGG + chr1.2:19281850-19281869 MS.gene040801:CDS 45.0%
!!! CTAGTTTTGATCGCGTTCTG+AGG - chr1.2:19281665-19281684 None:intergenic 45.0%
ACTCAGCAACTTAAAGGGGC+TGG + chr1.2:19281963-19281982 MS.gene040801:CDS 50.0%
CCAAAACTGATGAGCAGAGG+AGG + chr1.2:19281525-19281544 MS.gene040801:CDS 50.0%
CTCAGCAACTTAAAGGGGCT+GGG + chr1.2:19281964-19281983 MS.gene040801:CDS 50.0%
CTGCCAAAACTGATGAGCAG+AGG + chr1.2:19281522-19281541 MS.gene040801:CDS 50.0%
GACTGGATTCTGGATGCAGA+AGG + chr1.2:19281556-19281575 MS.gene040801:CDS 50.0%
GAGTCCAAATCCATCCCTCT+AGG - chr1.2:19281867-19281886 None:intergenic 50.0%
GCTGTCAGAGACATTACTGC+TGG + chr1.2:19281581-19281600 MS.gene040801:CDS 50.0%
TCAGCAACTTAAAGGGGCTG+GGG + chr1.2:19281965-19281984 MS.gene040801:CDS 50.0%
! CCTCCTCTGCTCATCAGTTT+TGG - chr1.2:19281528-19281547 None:intergenic 50.0%
! TCTAGTGATGGTGCTTGTGC+TGG + chr1.2:19281993-19282012 MS.gene040801:CDS 50.0%
! TGGTGACGACTCTGATGACA+AGG + chr1.2:19281929-19281948 MS.gene040801:CDS 50.0%
! TTTTGACCACCCTAGAGGGA+TGG + chr1.2:19281854-19281873 MS.gene040801:CDS 50.0%
!! CAGAGGAGGCATTGTAAGAC+TGG + chr1.2:19281539-19281558 MS.gene040801:CDS 50.0%
!! CGTGTTTTTGACCACCCTAG+AGG + chr1.2:19281849-19281868 MS.gene040801:CDS 50.0%
AGGTGATGCATCGCGGTTCA+TGG + chr1.2:19282025-19282044 MS.gene040801:CDS 55.0%
CTGAGCAAGGTGATGCATCG+CGG + chr1.2:19282018-19282037 MS.gene040801:CDS 55.0%
GTAGGTGAAGGTGATGCTGC+TGG + chr1.2:19281909-19281928 MS.gene040801:CDS 55.0%
! CCAAATCCATCCCTCTAGGG+TGG - chr1.2:19281863-19281882 None:intergenic 55.0%
! CCACCCTAGAGGGATGGATT+TGG + chr1.2:19281860-19281879 MS.gene040801:CDS 55.0%
! GATTTGCTTCCACCTGGTGC+TGG + chr1.2:19281317-19281336 MS.gene040801:CDS 55.0%
! GGAGCTGATGACGTGTTGGT+GGG + chr1.2:19281602-19281621 MS.gene040801:CDS 55.0%
! TGCTGGAGCTGATGACGTGT+TGG + chr1.2:19281598-19281617 MS.gene040801:CDS 55.0%
! TGGAGCTGATGACGTGTTGG+TGG + chr1.2:19281601-19281620 MS.gene040801:CDS 55.0%
!! GCTGGGGCTAGTTCTAGTGA+TGG + chr1.2:19281981-19282000 MS.gene040801:CDS 55.0%
! GCTTGTGCTGGTGCTGAGCA+AGG + chr1.2:19282005-19282024 MS.gene040801:CDS 60.0%
GAAGGGACGAAGCCAGCACC+AGG - chr1.2:19281332-19281351 None:intergenic 65.0%
GGGACGAAGCCAGCACCAGG+TGG - chr1.2:19281329-19281348 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr1.2 gene 19281314 19282067 19281314 ID=MS.gene040801
chr1.2 mRNA 19281314 19282067 19281314 ID=MS.gene040801.t1;Parent=MS.gene040801
chr1.2 exon 19281314 19281724 19281314 ID=MS.gene040801.t1.exon1;Parent=MS.gene040801.t1
chr1.2 CDS 19281314 19281724 19281314 ID=cds.MS.gene040801.t1;Parent=MS.gene040801.t1
chr1.2 exon 19281831 19282067 19281831 ID=MS.gene040801.t1.exon2;Parent=MS.gene040801.t1
chr1.2 CDS 19281831 19282067 19281831 ID=cds.MS.gene040801.t1;Parent=MS.gene040801.t1
Gene Sequence

>MS.gene040801

ATGGATTTGCTTCCACCTGGTGCTGGCTTCGTCCCTTCTGATGAACTCCTTGTTAGCTATTACCTTGCCAACAAAAACAATGAAGATGTTCAGAATTTCCATGGTTCTGACCTGATTAAGGAGCTGAACCTGTACCAGTATGATCCATTTGAATTGCATCTTGCTCAATCCTTTTTCTTCCCTCACACAAGGGAGTTTTACTGCTTCACTGCCAAAACTGATGAGCAGAGGAGGCATTGTAAGACTGGATTCTGGATGCAGAAGGGAGCTGTCAGAGACATTACTGCTGGAGCTGATGACGTGTTGGTGGGAAAGAAGTCTCTCTTCTTTTTCTATATAGGAAATTCCCCTCAGAACGCGATCAAAACTAGCTGGACTATGTACGAGTACACTCTTGTTAACAACCCTCAGGTATGTCATTTGGGAAAACTAACTTTCCCTACACTCTTTATTCAATCGATGATTAATTAATGTATTGGTAATGACTAACTATTTTTTTATATAAATAATTGTGCAGGATCCTTTTGTTGTTTGCCGTGTTTTTGACCACCCTAGAGGGATGGATTTGGACTCTGAATTTAGGGCCTTATCTGATGTAGGTGAAGGTGATGCTGCTGGTGACGACTCTGATGACAAGGCGAATGAAGGAACTCAGCAACTTAAAGGGGCTGGGGCTAGTTCTAGTGATGGTGCTTGTGCTGGTGCTGAGCAAGGTGATGCATCGCGGTTCATGGCTACTCAAGCCACTATTTAG
Protein sequence

>MS.gene040801.t1

MDLLPPGAGFVPSDELLVSYYLANKNNEDVQNFHGSDLIKELNLYQYDPFELHLAQSFFFPHTREFYCFTAKTDEQRRHCKTGFWMQKGAVRDITAGADDVLVGKKSLFFFYIGNSPQNAIKTSWTMYEYTLVNNPQDPFVVCRVFDHPRGMDLDSEFRALSDVGEGDAAGDDSDDKANEGTQQLKGAGASSSDGACAGAEQGDASRFMATQATI