Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene040976.t1 | XP_024638802.1 | 91.2 | 261 | 20 | 1 | 1 | 258 | 131 | 391 | 1.00E-138 | 502.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene040976.t1 | Q9SVY1 | 92.5 | 187 | 11 | 1 | 75 | 258 | 197 | 383 | 8.9e-107 | 387.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene040976.t1 | A0A396JLH8 | 91.2 | 261 | 20 | 1 | 1 | 258 | 131 | 391 | 7.5e-139 | 502.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene040976.t1 | TF | C2H2 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene040976.t1 | MTR_1g093095 | 74.419 | 172 | 41 | 1 | 79 | 247 | 99 | 270 | 1.71e-98 | 290 |
| MS.gene040976.t1 | MTR_1g016010 | 35.915 | 142 | 80 | 5 | 87 | 226 | 62 | 194 | 6.77e-20 | 88.6 |
| MS.gene040976.t1 | MTR_1g112270 | 34.932 | 146 | 85 | 5 | 82 | 226 | 60 | 196 | 1.47e-19 | 88.2 |
| MS.gene040976.t1 | MTR_1g112270 | 34.932 | 146 | 85 | 5 | 82 | 226 | 71 | 207 | 1.61e-19 | 87.8 |
| MS.gene040976.t1 | MTR_4g059870 | 35.971 | 139 | 80 | 4 | 89 | 226 | 61 | 191 | 1.70e-19 | 87.8 |
| MS.gene040976.t1 | MTR_1g094115 | 37.226 | 137 | 74 | 6 | 92 | 226 | 56 | 182 | 1.75e-19 | 87.8 |
| MS.gene040976.t1 | MTR_1g094115 | 35.374 | 147 | 83 | 6 | 82 | 226 | 63 | 199 | 2.34e-19 | 87.4 |
| MS.gene040976.t1 | MTR_2g093960 | 35.971 | 139 | 80 | 4 | 89 | 226 | 55 | 185 | 6.96e-19 | 85.5 |
| MS.gene040976.t1 | MTR_2g090745 | 33.742 | 163 | 97 | 6 | 65 | 226 | 7 | 159 | 7.70e-19 | 85.5 |
| MS.gene040976.t1 | MTR_8g017210 | 34.286 | 140 | 80 | 5 | 89 | 226 | 85 | 214 | 7.93e-19 | 85.9 |
| MS.gene040976.t1 | MTR_2g099990 | 33.333 | 147 | 86 | 5 | 82 | 226 | 62 | 198 | 1.51e-18 | 84.7 |
| MS.gene040976.t1 | MTR_2g099990 | 33.813 | 139 | 80 | 5 | 90 | 226 | 1 | 129 | 1.17e-17 | 82.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene040976.t1 | AT3G57670 | 76.718 | 262 | 39 | 4 | 19 | 258 | 122 | 383 | 5.98e-140 | 398 |
| MS.gene040976.t1 | AT1G51220 | 67.932 | 237 | 71 | 2 | 19 | 250 | 101 | 337 | 1.30e-117 | 340 |
| MS.gene040976.t1 | AT3G20880 | 68.201 | 239 | 65 | 6 | 19 | 250 | 176 | 410 | 8.97e-113 | 330 |
| MS.gene040976.t1 | AT1G13290 | 66.516 | 221 | 43 | 4 | 17 | 235 | 52 | 243 | 5.23e-103 | 301 |
| MS.gene040976.t1 | AT1G08290 | 56.175 | 251 | 100 | 4 | 3 | 243 | 82 | 332 | 9.08e-100 | 295 |
| MS.gene040976.t1 | AT1G34790 | 61.039 | 231 | 76 | 1 | 19 | 249 | 83 | 299 | 3.77e-98 | 289 |
| MS.gene040976.t1 | AT1G34370 | 35.028 | 177 | 100 | 5 | 89 | 256 | 28 | 198 | 4.73e-26 | 103 |
| MS.gene040976.t1 | AT1G34370 | 38.816 | 152 | 81 | 5 | 89 | 231 | 238 | 386 | 9.99e-26 | 105 |
| MS.gene040976.t1 | AT1G34370 | 38.816 | 152 | 81 | 5 | 89 | 231 | 238 | 386 | 9.99e-26 | 105 |
| MS.gene040976.t1 | AT5G22890 | 39.103 | 156 | 82 | 6 | 89 | 234 | 211 | 363 | 1.97e-23 | 97.8 |
| MS.gene040976.t1 | AT1G55110 | 36.620 | 142 | 79 | 5 | 87 | 226 | 84 | 216 | 3.22e-20 | 89.7 |
| MS.gene040976.t1 | AT1G55110 | 36.620 | 142 | 79 | 5 | 87 | 226 | 84 | 216 | 3.22e-20 | 89.7 |
| MS.gene040976.t1 | AT1G55110 | 36.620 | 142 | 79 | 5 | 87 | 226 | 84 | 216 | 3.22e-20 | 89.7 |
| MS.gene040976.t1 | AT2G02070 | 34.194 | 155 | 92 | 4 | 73 | 226 | 59 | 204 | 9.44e-20 | 88.6 |
| MS.gene040976.t1 | AT2G02070 | 34.194 | 155 | 92 | 4 | 73 | 226 | 59 | 204 | 9.44e-20 | 88.6 |
| MS.gene040976.t1 | AT5G03150 | 32.353 | 170 | 98 | 5 | 89 | 257 | 76 | 229 | 1.19e-19 | 88.2 |
| MS.gene040976.t1 | AT2G02080 | 35.461 | 141 | 81 | 4 | 87 | 226 | 75 | 206 | 1.57e-19 | 87.8 |
| MS.gene040976.t1 | AT2G02080 | 35.461 | 141 | 81 | 4 | 87 | 226 | 75 | 206 | 1.57e-19 | 87.8 |
| MS.gene040976.t1 | AT2G02080 | 35.461 | 141 | 81 | 4 | 87 | 226 | 75 | 206 | 1.57e-19 | 87.8 |
| MS.gene040976.t1 | AT2G02080 | 35.461 | 141 | 81 | 4 | 87 | 226 | 75 | 206 | 1.57e-19 | 87.8 |
| MS.gene040976.t1 | AT1G14580 | 35.616 | 146 | 84 | 4 | 82 | 226 | 69 | 205 | 5.68e-19 | 86.3 |
| MS.gene040976.t1 | AT1G14580 | 35.616 | 146 | 84 | 4 | 82 | 226 | 69 | 205 | 5.68e-19 | 86.3 |
| MS.gene040976.t1 | AT1G14580 | 35.616 | 146 | 84 | 4 | 82 | 226 | 83 | 219 | 6.19e-19 | 85.9 |
| MS.gene040976.t1 | AT2G02080 | 36.232 | 138 | 78 | 4 | 90 | 226 | 1 | 129 | 6.80e-19 | 85.9 |
| MS.gene040976.t1 | AT2G02080 | 36.232 | 138 | 78 | 4 | 90 | 226 | 1 | 129 | 6.80e-19 | 85.9 |
| MS.gene040976.t1 | AT5G66730 | 35.915 | 142 | 79 | 6 | 87 | 226 | 53 | 184 | 1.44e-18 | 85.1 |
| MS.gene040976.t1 | AT3G45260 | 35.971 | 139 | 80 | 4 | 89 | 226 | 62 | 192 | 1.04e-17 | 82.4 |
| MS.gene040976.t1 | AT3G45260 | 35.971 | 139 | 80 | 4 | 89 | 226 | 62 | 192 | 1.04e-17 | 82.4 |
| MS.gene040976.t1 | AT5G60470 | 33.813 | 139 | 83 | 4 | 89 | 226 | 58 | 188 | 1.41e-17 | 82.0 |
| MS.gene040976.t1 | AT1G03840 | 32.192 | 146 | 89 | 4 | 82 | 226 | 55 | 191 | 1.86e-17 | 81.6 |
| MS.gene040976.t1 | AT5G60470 | 33.813 | 139 | 83 | 4 | 89 | 226 | 67 | 197 | 1.92e-17 | 81.6 |
| MS.gene040976.t1 | AT1G03840 | 32.192 | 146 | 89 | 4 | 82 | 226 | 57 | 193 | 2.09e-17 | 81.6 |
| MS.gene040976.t1 | AT5G60470 | 33.813 | 139 | 83 | 4 | 89 | 226 | 63 | 193 | 2.13e-17 | 81.6 |
| MS.gene040976.t1 | AT5G44160 | 33.813 | 139 | 82 | 4 | 89 | 226 | 60 | 189 | 2.97e-17 | 81.3 |
| MS.gene040976.t1 | AT5G44160 | 33.813 | 139 | 82 | 4 | 89 | 226 | 21 | 150 | 3.08e-17 | 80.9 |
| MS.gene040976.t1 | AT3G50700 | 33.333 | 141 | 84 | 4 | 87 | 226 | 55 | 186 | 3.43e-17 | 80.9 |
| MS.gene040976.t1 | AT4G02670 | 32.192 | 146 | 90 | 3 | 82 | 226 | 71 | 208 | 8.00e-17 | 79.7 |
| MS.gene040976.t1 | AT4G02670 | 32.192 | 146 | 90 | 3 | 82 | 226 | 69 | 206 | 9.16e-17 | 79.3 |
| MS.gene040976.t1 | AT3G13810 | 32.877 | 146 | 89 | 4 | 82 | 226 | 87 | 224 | 1.02e-16 | 79.7 |
| MS.gene040976.t1 | AT3G13810 | 33.333 | 147 | 87 | 5 | 82 | 226 | 86 | 223 | 1.12e-16 | 79.7 |
| MS.gene040976.t1 | AT3G13810 | 33.333 | 147 | 87 | 5 | 82 | 226 | 86 | 223 | 1.12e-16 | 79.7 |
| MS.gene040976.t1 | AT3G13810 | 33.333 | 147 | 87 | 5 | 82 | 226 | 81 | 218 | 1.30e-16 | 79.3 |
| MS.gene040976.t1 | AT3G13810 | 32.877 | 146 | 89 | 4 | 82 | 226 | 73 | 210 | 1.35e-16 | 79.3 |
| MS.gene040976.t1 | AT3G13810 | 32.877 | 146 | 89 | 4 | 82 | 226 | 67 | 204 | 1.58e-16 | 79.0 |
| MS.gene040976.t1 | AT1G68130 | 30.216 | 139 | 86 | 5 | 87 | 222 | 62 | 192 | 2.66e-12 | 66.6 |
Find 50 sgRNAs with CRISPR-Local
Find 174 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACTCCTTCTCAGATTCTTAT+TGG | 0.201568 | 1.1:+38468499 | MS.gene040976:CDS |
| TGTGTACCTCTTAGAGATTC+TGG | 0.222352 | 1.1:-38471077 | None:intergenic |
| AAAGATCATATAAGAGCTTT+TGG | 0.231134 | 1.1:+38471362 | MS.gene040976:CDS |
| TCTTTCAATGGCTTTGCTCT+TGG | 0.301885 | 1.1:-38471167 | None:intergenic |
| GGGAGTGGTCATGCTGCTTA+TGG | 0.311784 | 1.1:+38471383 | MS.gene040976:CDS |
| CTTTCAATGGCTTTGCTCTT+GGG | 0.319894 | 1.1:-38471166 | None:intergenic |
| CACTTCAAACACATTATAAA+AGG | 0.323447 | 1.1:+38471198 | MS.gene040976:CDS |
| CATGTTGTTGTATCTGTTGA+AGG | 0.332315 | 1.1:-38468557 | None:intergenic |
| GTGACTGTTGCACTTCATAT+AGG | 0.339638 | 1.1:+38468304 | MS.gene040976:CDS |
| TGACTGTTGCACTTCATATA+GGG | 0.360463 | 1.1:+38468305 | MS.gene040976:CDS |
| ACCCTTGTTAAGTGATCTAT+TGG | 0.367615 | 1.1:-38468461 | None:intergenic |
| ATTGTTGTTCACCAGGTTGC+AGG | 0.377391 | 1.1:+38471129 | MS.gene040976:CDS |
| CCTTGCTATTGTTGTTCACC+AGG | 0.381067 | 1.1:+38471122 | MS.gene040976:CDS |
| CATGCTGCTTATGGAATTGA+TGG | 0.388035 | 1.1:+38471392 | MS.gene040976:CDS |
| TAGTCATAAAGTAGAAGAAA+AGG | 0.405108 | 1.1:+38468267 | MS.gene040976:CDS |
| AAGCTTTGGTATTGTCTTTG+TGG | 0.415419 | 1.1:+38471311 | MS.gene040976:CDS |
| CTTATCCTCAGATGCATATG+TGG | 0.432175 | 1.1:+38471027 | MS.gene040976:intron |
| AGAAGAACTGTGGAAAGCTT+TGG | 0.443136 | 1.1:+38471297 | MS.gene040976:CDS |
| AGTGTTCTGAAATCTTTCAA+TGG | 0.447098 | 1.1:-38471179 | None:intergenic |
| ATCTTGCACTTTAATGGATG+TGG | 0.454122 | 1.1:+38468237 | None:intergenic |
| TCTTGTTCAACTTCAGAAGC+AGG | 0.458660 | 1.1:-38471434 | None:intergenic |
| CACTTAACAAGGGTCAGTAT+TGG | 0.467580 | 1.1:+38468470 | MS.gene040976:CDS |
| TATTAGCGACGATTCCTCTT+CGG | 0.484816 | 1.1:+38468423 | MS.gene040976:CDS |
| CTAAGAGGTACACAACCAAC+AGG | 0.500045 | 1.1:+38471086 | MS.gene040976:CDS |
| ATCTCAGAAGAACTAGGGCT+TGG | 0.503709 | 1.1:-38468331 | None:intergenic |
| AGCGACGATTCCTCTTCGGC+TGG | 0.529279 | 1.1:+38468427 | MS.gene040976:CDS |
| CAGATGCATATGTGGGGACA+TGG | 0.531260 | 1.1:+38471035 | MS.gene040976:intron |
| CATGGATCACAATACAGAAA+AGG | 0.532079 | 1.1:+38471053 | MS.gene040976:CDS |
| TATGTGTAGAAAATGTGGTA+AGG | 0.535524 | 1.1:+38471241 | MS.gene040976:CDS |
| TTATCCTCAGATGCATATGT+GGG | 0.539918 | 1.1:+38471028 | MS.gene040976:intron |
| GTTGCAATCTCAGAAGAACT+AGG | 0.540111 | 1.1:-38468337 | None:intergenic |
| ATAAGAATCTGAGAAGGAGT+AGG | 0.541391 | 1.1:-38468496 | None:intergenic |
| GAAGAAAAGGAAGATCATGA+AGG | 0.566975 | 1.1:+38468280 | MS.gene040976:CDS |
| TCAATGTTGTTCCTGCAACC+TGG | 0.573538 | 1.1:-38471140 | None:intergenic |
| TAAGAATCTGAGAAGGAGTA+GGG | 0.573637 | 1.1:-38468495 | None:intergenic |
| AAAGGACCAGAATCTCTAAG+AGG | 0.574044 | 1.1:+38471071 | MS.gene040976:CDS |
| CACATTATAAAAGGAAACAT+GGG | 0.574183 | 1.1:+38471207 | MS.gene040976:CDS |
| ACACATTATAAAAGGAAACA+TGG | 0.579095 | 1.1:+38471206 | MS.gene040976:CDS |
| CACAACCAACAGGTATGCTA+AGG | 0.584031 | 1.1:+38471096 | MS.gene040976:CDS |
| TTGCAATCTCAGAAGAACTA+GGG | 0.593596 | 1.1:-38468336 | None:intergenic |
| GGAAGCCTTAGCATACCTGT+TGG | 0.618027 | 1.1:-38471101 | None:intergenic |
| TACCAATAGATCACTTAACA+AGG | 0.618619 | 1.1:+38468459 | MS.gene040976:CDS |
| CAACAGATACAACAACATGC+AGG | 0.634469 | 1.1:+38468561 | MS.gene040976:CDS |
| TCTTCACTACTGAGTCTGAG+TGG | 0.642115 | 1.1:-38471465 | None:intergenic |
| GGACCAATAAGAATCTGAGA+AGG | 0.643048 | 1.1:-38468502 | None:intergenic |
| ACAGGACAAGAGAACTGTGT+AGG | 0.644430 | 1.1:-38468523 | None:intergenic |
| AGAACTCATGAGAAGAACTG+TGG | 0.653790 | 1.1:+38471287 | MS.gene040976:CDS |
| CCTGGTGAACAACAATAGCA+AGG | 0.660333 | 1.1:-38471122 | None:intergenic |
| ACCAATAGATCACTTAACAA+GGG | 0.699637 | 1.1:+38468460 | MS.gene040976:CDS |
| TATCCTCAGATGCATATGTG+GGG | 0.710095 | 1.1:+38471029 | MS.gene040976:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTATTTACAATTAAATAGA+AGG | - | chr1.1:38470596-38470615 | None:intergenic | 10.0% |
| !! | TATAAATTACATTAAATTTG+AGG | + | chr1.1:38469866-38469885 | MS.gene040976:intron | 10.0% |
| !! | TTAATATATTATCATTTACT+TGG | - | chr1.1:38469340-38469359 | None:intergenic | 10.0% |
| !! | TTCTATTTAATTGTAAATAA+TGG | + | chr1.1:38470595-38470614 | MS.gene040976:intron | 10.0% |
| !!! | AAATAATGGTTTATATATTT+TGG | + | chr1.1:38470609-38470628 | MS.gene040976:intron | 10.0% |
| !!! | ATAAGAAAAAATTATCTTTT+TGG | + | chr1.1:38469141-38469160 | MS.gene040976:intron | 10.0% |
| !!! | TTATAAATTTCATTAATTTG+AGG | + | chr1.1:38469918-38469937 | MS.gene040976:intron | 10.0% |
| !! | AAACAAAAACTATTAATTGT+TGG | - | chr1.1:38469366-38469385 | None:intergenic | 15.0% |
| !! | TTTAATTAATTACACCAATA+TGG | - | chr1.1:38469079-38469098 | None:intergenic | 15.0% |
| !!! | ATAATAACTTCTTCTTTTTA+AGG | + | chr1.1:38470975-38470994 | MS.gene040976:intron | 15.0% |
| !!! | ATTATAAATTAACTTGAGAA+AGG | + | chr1.1:38470313-38470332 | MS.gene040976:intron | 15.0% |
| !!! | GAAAACAAATTTAATTTCTT+GGG | + | chr1.1:38468914-38468933 | MS.gene040976:intron | 15.0% |
| !!! | TGAAAACAAATTTAATTTCT+TGG | + | chr1.1:38468913-38468932 | MS.gene040976:intron | 15.0% |
| !!! | TTATAAATTAACTTGAGAAA+GGG | + | chr1.1:38470314-38470333 | MS.gene040976:intron | 15.0% |
| !!! | TTTTATGTGGATTAATAATT+AGG | - | chr1.1:38470761-38470780 | None:intergenic | 15.0% |
| !! | AAAACTAAAAAAATGTTTGC+TGG | - | chr1.1:38470880-38470899 | None:intergenic | 20.0% |
| !! | AAGAAAAATTTCAAAAGAAG+AGG | - | chr1.1:38469004-38469023 | None:intergenic | 20.0% |
| !! | ATATGAATTCAGTCTAAAAA+GGG | - | chr1.1:38469399-38469418 | None:intergenic | 20.0% |
| !! | TATATGAATTCAGTCTAAAA+AGG | - | chr1.1:38469400-38469419 | None:intergenic | 20.0% |
| !! | TGGACACTAAATTAATATTA+AGG | - | chr1.1:38468668-38468687 | None:intergenic | 20.0% |
| !! | TGTAATGATTATTTAACTCA+AGG | - | chr1.1:38469980-38469999 | None:intergenic | 20.0% |
| !!! | CATATCATTTTTGTTTTATG+TGG | - | chr1.1:38470774-38470793 | None:intergenic | 20.0% |
| !!! | GTATTTTTTGCATGATAAAA+TGG | + | chr1.1:38469108-38469127 | MS.gene040976:intron | 20.0% |
| !!! | TGATTTTCTTAAATTATCAG+CGG | + | chr1.1:38468803-38468822 | MS.gene040976:intron | 20.0% |
| !!! | TTTTAACAAAAAATGGTGAA+GGG | + | chr1.1:38470283-38470302 | MS.gene040976:intron | 20.0% |
| !!! | TTTTTAACAAAAAATGGTGA+AGG | + | chr1.1:38470282-38470301 | MS.gene040976:intron | 20.0% |
| ! | AAGTTCCACATATACATTAA+TGG | + | chr1.1:38469434-38469453 | MS.gene040976:intron | 25.0% |
| ! | ACACATTATAAAAGGAAACA+TGG | + | chr1.1:38471206-38471225 | MS.gene040976:CDS | 25.0% |
| ! | AGGGAAATCATTATTAATAG+CGG | + | chr1.1:38470333-38470352 | MS.gene040976:intron | 25.0% |
| ! | ATTCCTAATTAAAATCTTGG+CGG | + | chr1.1:38470795-38470814 | MS.gene040976:intron | 25.0% |
| ! | CACATTATAAAAGGAAACAT+GGG | + | chr1.1:38471207-38471226 | MS.gene040976:CDS | 25.0% |
| ! | CACTTCAAACACATTATAAA+AGG | + | chr1.1:38471198-38471217 | MS.gene040976:CDS | 25.0% |
| ! | CATATAAATGTCATGTCAAA+AGG | + | chr1.1:38470466-38470485 | MS.gene040976:intron | 25.0% |
| ! | GAAGAAAAATAGAAAGTGAA+CGG | - | chr1.1:38469027-38469046 | None:intergenic | 25.0% |
| ! | GATGTTTGACTAATTGTAAT+AGG | + | chr1.1:38468966-38468985 | MS.gene040976:intron | 25.0% |
| ! | TAGTCATAAAGTAGAAGAAA+AGG | + | chr1.1:38468267-38468286 | MS.gene040976:CDS | 25.0% |
| ! | TATGTCCATTAATGTATATG+TGG | - | chr1.1:38469442-38469461 | None:intergenic | 25.0% |
| ! | TCTTTGTTCTTTAACCATAT+TGG | + | chr1.1:38469062-38469081 | MS.gene040976:intron | 25.0% |
| ! | TGCATTCCTAATTAAAATCT+TGG | + | chr1.1:38470792-38470811 | MS.gene040976:intron | 25.0% |
| !! | AAAGATCATATAAGAGCTTT+TGG | + | chr1.1:38471362-38471381 | MS.gene040976:CDS | 25.0% |
| !! | AAGATCATATAAGAGCTTTT+GGG | + | chr1.1:38471363-38471382 | MS.gene040976:CDS | 25.0% |
| !! | TAATAGAACTGAATTTTGCA+GGG | + | chr1.1:38469299-38469318 | MS.gene040976:intron | 25.0% |
| !! | TCAGATTCTATATATCCTTT+TGG | + | chr1.1:38469186-38469205 | MS.gene040976:intron | 25.0% |
| !! | TTAATAGAACTGAATTTTGC+AGG | + | chr1.1:38469298-38469317 | MS.gene040976:intron | 25.0% |
| !!! | TGTTTTCAGAAGTATGAATT+TGG | - | chr1.1:38468901-38468920 | None:intergenic | 25.0% |
| AACAAAGAAAAATGACCTTG+GGG | - | chr1.1:38469050-38469069 | None:intergenic | 30.0% | |
| AATGTATATGTGGAACTTTC+AGG | - | chr1.1:38469432-38469451 | None:intergenic | 30.0% | |
| ACAATTAAATAGAAGGCAAG+CGG | - | chr1.1:38470589-38470608 | None:intergenic | 30.0% | |
| ACCAATAGATCACTTAACAA+GGG | + | chr1.1:38468460-38468479 | MS.gene040976:CDS | 30.0% | |
| AGAACAAAGAAAAATGACCT+TGG | - | chr1.1:38469052-38469071 | None:intergenic | 30.0% | |
| AGACTTCAATGTTGTACTAA+AGG | - | chr1.1:38469244-38469263 | None:intergenic | 30.0% | |
| ATAACAATGTCATGTCTTCT+AGG | + | chr1.1:38470495-38470514 | MS.gene040976:intron | 30.0% | |
| GAACAAAGAAAAATGACCTT+GGG | - | chr1.1:38469051-38469070 | None:intergenic | 30.0% | |
| GAGTTGTTTAATCAACCAAA+AGG | - | chr1.1:38469204-38469223 | None:intergenic | 30.0% | |
| GCAATAATCATCATTGATGA+AGG | - | chr1.1:38470822-38470841 | None:intergenic | 30.0% | |
| GTATGAATTTGGAAGAAAAG+TGG | - | chr1.1:38468890-38468909 | None:intergenic | 30.0% | |
| TACCAATAGATCACTTAACA+AGG | + | chr1.1:38468459-38468478 | MS.gene040976:CDS | 30.0% | |
| TATGTGTAGAAAATGTGGTA+AGG | + | chr1.1:38471241-38471260 | MS.gene040976:CDS | 30.0% | |
| TCTTAAATTATCAGCGGTAT+CGG | + | chr1.1:38468809-38468828 | MS.gene040976:intron | 30.0% | |
| TTAAGGAGAAGAAGATCTAT+AGG | - | chr1.1:38468651-38468670 | None:intergenic | 30.0% | |
| TTACAACTAAGTGATCTCTA+TGG | + | chr1.1:38470132-38470151 | MS.gene040976:intron | 30.0% | |
| TTCCTAATTAAAATCTTGGC+GGG | + | chr1.1:38470796-38470815 | MS.gene040976:intron | 30.0% | |
| TTTAGTGTATTCATATGCGT+CGG | - | chr1.1:38468778-38468797 | None:intergenic | 30.0% | |
| TTTGGTTGATTAAACAACTC+AGG | + | chr1.1:38469204-38469223 | MS.gene040976:intron | 30.0% | |
| ! | AGTTGCAAAATCAAGTTGTT+AGG | + | chr1.1:38470700-38470719 | MS.gene040976:intron | 30.0% |
| ! | CCACATTTTCTACACATAAA+AGG | - | chr1.1:38471239-38471258 | None:intergenic | 30.0% |
| ! | CCTTTTATGTGTAGAAAATG+TGG | + | chr1.1:38471236-38471255 | MS.gene040976:CDS | 30.0% |
| ! | GTTCTGATTTTAAGCATAAG+CGG | + | chr1.1:38471333-38471352 | MS.gene040976:CDS | 30.0% |
| ! | GTTGCAAAATCAAGTTGTTA+GGG | + | chr1.1:38470701-38470720 | MS.gene040976:intron | 30.0% |
| ! | TCATTAATTTGAGGTGCAAA+AGG | + | chr1.1:38469927-38469946 | MS.gene040976:intron | 30.0% |
| ! | TTTTCCATGATACAATTAGC+AGG | - | chr1.1:38469581-38469600 | None:intergenic | 30.0% |
| !! | AGTGTTCTGAAATCTTTCAA+TGG | - | chr1.1:38471182-38471201 | None:intergenic | 30.0% |
| !!! | AATTGATGGTTTTGAAGAAG+AGG | + | chr1.1:38471406-38471425 | MS.gene040976:CDS | 30.0% |
| !!! | GTGCTAAGGTTTTGAAAAAA+AGG | - | chr1.1:38468625-38468644 | None:intergenic | 30.0% |
| ACAAAGAAAAATGACCTTGG+GGG | - | chr1.1:38469049-38469068 | None:intergenic | 35.0% | |
| ACCCTTGTTAAGTGATCTAT+TGG | - | chr1.1:38468464-38468483 | None:intergenic | 35.0% | |
| ACTCATCAACCTAATGATAG+TGG | - | chr1.1:38470108-38470127 | None:intergenic | 35.0% | |
| ACTCCTTCTCAGATTCTTAT+TGG | + | chr1.1:38468499-38468518 | MS.gene040976:CDS | 35.0% | |
| AGTTCTATTAAGCAGTTGCA+TGG | - | chr1.1:38469289-38469308 | None:intergenic | 35.0% | |
| AGTTGAATGAACCACAAACA+CGG | - | chr1.1:38468857-38468876 | None:intergenic | 35.0% | |
| AGTTGCATGGCAAAATACAT+AGG | - | chr1.1:38469276-38469295 | None:intergenic | 35.0% | |
| ATAAGAATCTGAGAAGGAGT+AGG | - | chr1.1:38468499-38468518 | None:intergenic | 35.0% | |
| CAATTAAATAGAAGGCAAGC+GGG | - | chr1.1:38470588-38470607 | None:intergenic | 35.0% | |
| CATGGATCACAATACAGAAA+AGG | + | chr1.1:38471053-38471072 | MS.gene040976:CDS | 35.0% | |
| CATGTTGTTGTATCTGTTGA+AGG | - | chr1.1:38468560-38468579 | None:intergenic | 35.0% | |
| CATTTCACAATCAACTCAGT+GGG | - | chr1.1:38470251-38470270 | None:intergenic | 35.0% | |
| CTCATCAACCTAATGATAGT+GGG | - | chr1.1:38470107-38470126 | None:intergenic | 35.0% | |
| CTCTATGGAAATAGACAAGA+GGG | + | chr1.1:38470147-38470166 | MS.gene040976:intron | 35.0% | |
| GAAGAAAAGGAAGATCATGA+AGG | + | chr1.1:38468280-38468299 | MS.gene040976:CDS | 35.0% | |
| GTAGCTCAATGGTATGAATT+TGG | - | chr1.1:38468688-38468707 | None:intergenic | 35.0% | |
| TAAGAATCTGAGAAGGAGTA+GGG | - | chr1.1:38468498-38468517 | None:intergenic | 35.0% | |
| TCAAGAGGGTTCAATATCTT+TGG | + | chr1.1:38470067-38470086 | MS.gene040976:intron | 35.0% | |
| TCATTTCACAATCAACTCAG+TGG | - | chr1.1:38470252-38470271 | None:intergenic | 35.0% | |
| TCTCTATGGAAATAGACAAG+AGG | + | chr1.1:38470146-38470165 | MS.gene040976:intron | 35.0% | |
| TGACTGTTGCACTTCATATA+GGG | + | chr1.1:38468305-38468324 | MS.gene040976:CDS | 35.0% | |
| TTATCCTCAGATGCATATGT+GGG | + | chr1.1:38471028-38471047 | MS.gene040976:intron | 35.0% | |
| TTGCAATCTCAGAAGAACTA+GGG | - | chr1.1:38468339-38468358 | None:intergenic | 35.0% | |
| ! | AAGCTTTGGTATTGTCTTTG+TGG | + | chr1.1:38471311-38471330 | MS.gene040976:CDS | 35.0% |
| ! | ATATGTGGAACTTTCAGGTA+TGG | - | chr1.1:38469427-38469446 | None:intergenic | 35.0% |
| ! | ATTTTGCAACTTCAAGTGAG+GGG | - | chr1.1:38470691-38470710 | None:intergenic | 35.0% |
| ! | GATTTTGCAACTTCAAGTGA+GGG | - | chr1.1:38470692-38470711 | None:intergenic | 35.0% |
| ! | TGATTTTGCAACTTCAAGTG+AGG | - | chr1.1:38470693-38470712 | None:intergenic | 35.0% |
| ! | TTGAAGGTTTTACAGCAAAC+AGG | - | chr1.1:38468544-38468563 | None:intergenic | 35.0% |
| !! | TTGTAAGAGTTTTGTCCATG+AGG | - | chr1.1:38470738-38470757 | None:intergenic | 35.0% |
| !! | TTTCTATTTTTCTTCCCCCA+AGG | + | chr1.1:38469032-38469051 | MS.gene040976:intron | 35.0% |
| !!! | ATTGGTTTTGTCATCCGAAA+AGG | + | chr1.1:38470542-38470561 | MS.gene040976:intron | 35.0% |
| AAAGGACCAGAATCTCTAAG+AGG | + | chr1.1:38471071-38471090 | MS.gene040976:CDS | 40.0% | |
| AATGTTGTGTTCACGAGGAT+TGG | + | chr1.1:38470524-38470543 | MS.gene040976:intron | 40.0% | |
| AGAACTCATGAGAAGAACTG+TGG | + | chr1.1:38471287-38471306 | MS.gene040976:CDS | 40.0% | |
| AGAAGAACTGTGGAAAGCTT+TGG | + | chr1.1:38471297-38471316 | MS.gene040976:CDS | 40.0% | |
| CAACAGATACAACAACATGC+AGG | + | chr1.1:38468561-38468580 | MS.gene040976:CDS | 40.0% | |
| CAAGCCTGCTAATTGTATCA+TGG | + | chr1.1:38469574-38469593 | MS.gene040976:intron | 40.0% | |
| CACTTAACAAGGGTCAGTAT+TGG | + | chr1.1:38468470-38468489 | MS.gene040976:CDS | 40.0% | |
| CTATTTGCCACAATTCAAGG+AGG | - | chr1.1:38469704-38469723 | None:intergenic | 40.0% | |
| CTTATCCTCAGATGCATATG+TGG | + | chr1.1:38471027-38471046 | MS.gene040976:intron | 40.0% | |
| GACAATGAGACACTTCAAGA+GGG | + | chr1.1:38470053-38470072 | MS.gene040976:intron | 40.0% | |
| GAGGGGTTCAAATTTCATGT+AGG | - | chr1.1:38470674-38470693 | None:intergenic | 40.0% | |
| GCACTATTTGCCACAATTCA+AGG | - | chr1.1:38469707-38469726 | None:intergenic | 40.0% | |
| GGACCAATAAGAATCTGAGA+AGG | - | chr1.1:38468505-38468524 | None:intergenic | 40.0% | |
| GGAGAAGAAGATCTATAGGT+TGG | - | chr1.1:38468647-38468666 | None:intergenic | 40.0% | |
| GGCAAATAGTGCATTGTGAT+TGG | + | chr1.1:38469715-38469734 | MS.gene040976:intron | 40.0% | |
| GTCTCAAACCCACTATCATT+AGG | + | chr1.1:38470096-38470115 | MS.gene040976:intron | 40.0% | |
| GTGACTGTTGCACTTCATAT+AGG | + | chr1.1:38468304-38468323 | MS.gene040976:CDS | 40.0% | |
| GTTGCAATCTCAGAAGAACT+AGG | - | chr1.1:38468340-38468359 | None:intergenic | 40.0% | |
| TATCCTCAGATGCATATGTG+GGG | + | chr1.1:38471029-38471048 | MS.gene040976:intron | 40.0% | |
| TATTAGCGACGATTCCTCTT+CGG | + | chr1.1:38468423-38468442 | MS.gene040976:CDS | 40.0% | |
| TCTACGCAGCAATTGTTCTT+TGG | - | chr1.1:38470030-38470049 | None:intergenic | 40.0% | |
| TCTTGTTCAACTTCAGAAGC+AGG | - | chr1.1:38471437-38471456 | None:intergenic | 40.0% | |
| TGACAATGAGACACTTCAAG+AGG | + | chr1.1:38470052-38470071 | MS.gene040976:intron | 40.0% | |
| TGTGGCTGAAAAATAGGAAG+TGG | - | chr1.1:38469681-38469700 | None:intergenic | 40.0% | |
| TGTGTACCTCTTAGAGATTC+TGG | - | chr1.1:38471080-38471099 | None:intergenic | 40.0% | |
| ! | CATGCTGCTTATGGAATTGA+TGG | + | chr1.1:38471392-38471411 | MS.gene040976:CDS | 40.0% |
| ! | CTTTCAATGGCTTTGCTCTT+GGG | - | chr1.1:38471169-38471188 | None:intergenic | 40.0% |
| ! | TCTTTCAATGGCTTTGCTCT+TGG | - | chr1.1:38471170-38471189 | None:intergenic | 40.0% |
| ! | TTTGCAAAGGTGTAGCTCAA+TGG | - | chr1.1:38468699-38468718 | None:intergenic | 40.0% |
| !! | AGATCTATAGGTTGGTGCTA+AGG | - | chr1.1:38468639-38468658 | None:intergenic | 40.0% |
| !! | ATGATAGTGGGTTTGAGACT+TGG | - | chr1.1:38470095-38470114 | None:intergenic | 40.0% |
| !! | CATATAAGAGCTTTTGGGAG+TGG | + | chr1.1:38471368-38471387 | MS.gene040976:CDS | 40.0% |
| !! | CTTTTGCTGTAAGAGGAGAT+TGG | + | chr1.1:38471264-38471283 | MS.gene040976:CDS | 40.0% |
| ACAGGACAAGAGAACTGTGT+AGG | - | chr1.1:38468526-38468545 | None:intergenic | 45.0% | |
| ACTCAAAAATCCAGCCGAAG+AGG | - | chr1.1:38468440-38468459 | None:intergenic | 45.0% | |
| AGGGATGAATTGACACCTCA+TGG | + | chr1.1:38470720-38470739 | MS.gene040976:intron | 45.0% | |
| ATCTCAGAAGAACTAGGGCT+TGG | - | chr1.1:38468334-38468353 | None:intergenic | 45.0% | |
| CACAACCAACAGGTATGCTA+AGG | + | chr1.1:38471096-38471115 | MS.gene040976:CDS | 45.0% | |
| CCACAAACACGGACATAACA+TGG | - | chr1.1:38468846-38468865 | None:intergenic | 45.0% | |
| CCATGAATGTTGTGTTCACG+AGG | + | chr1.1:38470519-38470538 | MS.gene040976:intron | 45.0% | |
| CCATGTTATGTCCGTGTTTG+TGG | + | chr1.1:38468843-38468862 | MS.gene040976:intron | 45.0% | |
| CCTCGTGAACACAACATTCA+TGG | - | chr1.1:38470522-38470541 | None:intergenic | 45.0% | |
| CCTGGTGAACAACAATAGCA+AGG | - | chr1.1:38471125-38471144 | None:intergenic | 45.0% | |
| TCAATGTTGTTCCTGCAACC+TGG | - | chr1.1:38471143-38471162 | None:intergenic | 45.0% | |
| ! | ACTGCGTCGTTAGACCTTTT+CGG | - | chr1.1:38470559-38470578 | None:intergenic | 45.0% |
| ! | AGGAGGTGTGGCTGAAAAAT+AGG | - | chr1.1:38469687-38469706 | None:intergenic | 45.0% |
| ! | ATTGTTGTTCACCAGGTTGC+AGG | + | chr1.1:38471129-38471148 | MS.gene040976:CDS | 45.0% |
| ! | CATAGGAGGAGGTTTTGCAA+AGG | - | chr1.1:38468712-38468731 | None:intergenic | 45.0% |
| ! | CTAAGAGGTACACAACCAAC+AGG | + | chr1.1:38471086-38471105 | MS.gene040976:CDS | 45.0% |
| ! | GTGGAACTTTCAGGTATGGA+AGG | - | chr1.1:38469423-38469442 | None:intergenic | 45.0% |
| !! | CCTTGCTATTGTTGTTCACC+AGG | + | chr1.1:38471122-38471141 | MS.gene040976:CDS | 45.0% |
| !! | GGTAAGGCTTTTGCTGTAAG+AGG | + | chr1.1:38471257-38471276 | MS.gene040976:CDS | 45.0% |
| !!! | GGCCCGCCAAGATTTTAATT+AGG | - | chr1.1:38470801-38470820 | None:intergenic | 45.0% |
| !!! | ATAATTTTTTTAACAAAAAA+TGG | + | chr1.1:38470276-38470295 | MS.gene040976:intron | 5.0% |
| !!! | TAATAATGTAATTTTTAAAA+GGG | + | chr1.1:38470362-38470381 | MS.gene040976:intron | 5.0% |
| !!! | TTAATAATGTAATTTTTAAA+AGG | + | chr1.1:38470361-38470380 | MS.gene040976:intron | 5.0% |
| AAACCTCCTCCTATGAAGCG+CGG | + | chr1.1:38468717-38468736 | MS.gene040976:intron | 50.0% | |
| AGCCACACCTCCTTGAATTG+TGG | + | chr1.1:38469694-38469713 | MS.gene040976:intron | 50.0% | |
| CAGATGCATATGTGGGGACA+TGG | + | chr1.1:38471035-38471054 | MS.gene040976:intron | 50.0% | |
| GGAAGCCTTAGCATACCTGT+TGG | - | chr1.1:38471104-38471123 | None:intergenic | 50.0% | |
| TATGAAGCGCGGACACTCAT+CGG | + | chr1.1:38468728-38468747 | MS.gene040976:intron | 50.0% | |
| TGCCACAATTCAAGGAGGTG+TGG | - | chr1.1:38469699-38469718 | None:intergenic | 50.0% | |
| TGTCCCCACATATGCATCTG+AGG | - | chr1.1:38471035-38471054 | None:intergenic | 50.0% | |
| GATGAGTGTCCGCGCTTCAT+AGG | - | chr1.1:38468729-38468748 | None:intergenic | 55.0% | |
| ! | GGGAGTGGTCATGCTGCTTA+TGG | + | chr1.1:38471383-38471402 | MS.gene040976:CDS | 55.0% |
| AGCGACGATTCCTCTTCGGC+TGG | + | chr1.1:38468427-38468446 | MS.gene040976:CDS | 60.0% | |
| GAGTGTCCGCGCTTCATAGG+AGG | - | chr1.1:38468726-38468745 | None:intergenic | 60.0% | |
| TGTCCGCGCTTCATAGGAGG+AGG | - | chr1.1:38468723-38468742 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 38468250 | 38471481 | 38468250 | ID=MS.gene040976 |
| chr1.1 | mRNA | 38468250 | 38471481 | 38468250 | ID=MS.gene040976.t1;Parent=MS.gene040976 |
| chr1.1 | exon | 38468250 | 38468582 | 38468250 | ID=MS.gene040976.t1.exon1;Parent=MS.gene040976.t1 |
| chr1.1 | CDS | 38468250 | 38468582 | 38468250 | ID=cds.MS.gene040976.t1;Parent=MS.gene040976.t1 |
| chr1.1 | exon | 38471038 | 38471481 | 38471038 | ID=MS.gene040976.t1.exon2;Parent=MS.gene040976.t1 |
| chr1.1 | CDS | 38471038 | 38471481 | 38471038 | ID=cds.MS.gene040976.t1;Parent=MS.gene040976.t1 |
| Gene Sequence |
| Protein sequence |
