AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene04098

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene04098.t1 MTR_3g061510 98.176 329 6 0 1 329 1 329 0.0 660
MS.gene04098.t1 MTR_3g061510 98.176 329 6 0 1 329 21 349 0.0 659
MS.gene04098.t1 MTR_8g037270 46.445 211 87 7 20 226 21 209 1.62e-46 159
MS.gene04098.t1 MTR_2g041090 60.577 104 36 3 128 226 30 133 1.45e-35 129
MS.gene04098.t1 MTR_2g030170 56.731 104 40 1 144 242 81 184 1.91e-32 120
MS.gene04098.t1 MTR_8g019540 54.717 106 44 2 124 226 116 220 3.09e-32 122
MS.gene04098.t1 MTR_2g099490 54.545 121 50 3 112 229 114 232 1.95e-31 120
MS.gene04098.t1 MTR_2g030170 59.551 89 36 0 154 242 129 217 1.05e-30 116
MS.gene04098.t1 MTR_7g106450 41.579 190 88 8 104 285 106 280 2.49e-30 117
MS.gene04098.t1 MTR_2g099490 48.889 135 52 3 112 229 114 248 3.60e-29 115
MS.gene04098.t1 MTR_1g056530 50.427 117 44 4 124 237 126 231 1.73e-27 110
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene04098.t1 AT5G12840 54.412 272 115 7 1 268 1 267 4.04e-86 260
MS.gene04098.t1 AT5G12840 54.412 272 115 7 1 268 1 267 4.04e-86 260
MS.gene04098.t1 AT5G12840 54.212 273 115 8 1 268 1 268 2.90e-84 256
MS.gene04098.t1 AT5G12840 54.212 273 115 8 1 268 1 268 2.90e-84 256
MS.gene04098.t1 AT5G12840 54.212 273 115 8 1 268 1 268 2.90e-84 256
MS.gene04098.t1 AT3G20910 59.361 219 59 7 116 329 110 303 3.89e-74 231
MS.gene04098.t1 AT1G30500 59.091 110 40 3 124 231 52 158 2.74e-33 122
MS.gene04098.t1 AT1G30500 56.757 111 45 2 124 231 52 162 3.42e-32 119
MS.gene04098.t1 AT1G72830 57.143 98 39 2 132 226 137 234 3.29e-31 120
MS.gene04098.t1 AT2G34720 45.714 140 70 2 125 258 48 187 6.12e-31 115
MS.gene04098.t1 AT2G34720 47.015 134 65 2 131 258 19 152 5.52e-30 112
MS.gene04098.t1 AT2G34720 47.015 134 65 2 131 258 19 152 5.52e-30 112
MS.gene04098.t1 AT1G17590 57.732 97 35 3 132 226 135 227 6.39e-30 116
MS.gene04098.t1 AT1G17590 57.732 97 35 3 132 226 135 227 6.39e-30 116
MS.gene04098.t1 AT1G17590 57.732 97 35 3 132 226 135 227 6.39e-30 116
MS.gene04098.t1 AT1G17590 57.732 97 35 3 132 226 135 227 6.39e-30 116
MS.gene04098.t1 AT1G72830 56.566 99 39 3 132 226 137 235 1.73e-29 115
MS.gene04098.t1 AT1G54160 43.066 137 68 3 95 226 102 233 7.42e-29 113
MS.gene04098.t1 AT3G14020 54.167 96 39 3 135 226 132 226 5.41e-27 108
MS.gene04098.t1 AT3G14020 54.167 96 39 3 135 226 132 226 5.41e-27 108
MS.gene04098.t1 AT5G06510 31.776 214 110 8 27 235 13 195 9.25e-22 93.2
MS.gene04098.t1 AT5G06510 31.776 214 110 8 27 235 13 195 9.25e-22 93.2
MS.gene04098.t1 AT5G06510 31.776 214 110 8 27 235 13 195 9.25e-22 93.2
MS.gene04098.t1 AT5G06510 31.776 214 110 8 27 235 13 195 9.25e-22 93.2
MS.gene04098.t1 AT5G06510 45.872 109 43 4 130 235 5 100 1.33e-21 90.5
MS.gene04098.t1 AT5G06510 45.872 109 43 4 130 235 5 100 1.33e-21 90.5
MS.gene04098.t1 AT5G06510 45.872 109 43 4 130 235 51 146 6.22e-21 89.7
MS.gene04098.t1 AT3G05690 44.928 138 55 6 114 242 88 213 8.07e-21 91.3
MS.gene04098.t1 AT3G05690 34.468 235 110 11 22 242 46 250 1.10e-20 91.3
MS.gene04098.t1 AT1G72830 48.421 95 27 2 132 226 137 209 6.39e-19 86.3

Find 104 sgRNAs with CRISPR-Local

Find 170 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTTATCAGGATCCATATTA+TGG 0.185298 3.2:-52940417 MS.gene04098:CDS
CCTCGGTTGATTTGCAGTTT+CGG 0.272870 3.2:+52941181 None:intergenic
TTCCTCATTCATCTCACTAT+TGG 0.285307 3.2:+52940998 None:intergenic
TATGCAATCTTCAAGGTATC+AGG 0.309277 3.2:-52939019 MS.gene04098:CDS
CTCAAGGGGCAAAGGCATTC+TGG 0.314340 3.2:+52940207 None:intergenic
GTGGAAGAAGGGGACTGTTC+AGG 0.315135 3.2:-52938988 MS.gene04098:CDS
TTGATTTGCAGTTTCGGACT+TGG 0.324341 3.2:+52941187 None:intergenic
GCATGAGGCACTCCTATAAA+AGG 0.333358 3.2:+52940229 None:intergenic
TTCTAAAGCACCTGATTGAT+TGG 0.345684 3.2:+52940938 None:intergenic
CCAGACATTGTTTGCGCTAC+AGG 0.346287 3.2:+52941089 None:intergenic
TGTTTAGCGTTCACATAAAC+AGG 0.347626 3.2:+52940172 None:intergenic
CAAAGACTGGCCTTCCTCAT+TGG 0.355087 3.2:+52941022 None:intergenic
TCGCATGTTGGGAGAATTCC+AGG 0.360834 3.2:+52939101 None:intergenic
GCAAGAGGATCAAACGAAAA+TGG 0.361215 3.2:-52939072 MS.gene04098:CDS
TTCTTCTTGATAGGAAATTA+CGG 0.368800 3.2:-52940782 MS.gene04098:intron
ATGTGCTACAAATCCTTATC+AGG 0.378434 3.2:-52940430 MS.gene04098:CDS
GCATACAATTGTTGTTGTTA+TGG 0.392042 3.2:+52939037 None:intergenic
CTTGCATCTTGTCGCATGTT+GGG 0.394811 3.2:+52939090 None:intergenic
CTTATCAGGATCCATATTAT+GGG 0.407754 3.2:-52940416 MS.gene04098:CDS
TCGCAATCAATTAGTTCATC+TGG 0.408092 3.2:-52939156 MS.gene04098:CDS
GAAAACTGATGGTGAGGCCT+CGG 0.419006 3.2:-52939211 MS.gene04098:CDS
GAGGCCTCGGGAAAGGATAA+TGG 0.429841 3.2:-52939198 MS.gene04098:CDS
CCTGTAGCGCAAACAATGTC+TGG 0.435636 3.2:-52941089 MS.gene04098:CDS
ACAATCAAGAGAGGATGAAT+TGG 0.445592 3.2:+52941064 None:intergenic
TCCTCTCTTGATTGTCCCAA+TGG 0.445841 3.2:-52941056 MS.gene04098:CDS
TGTCTAGATTCATGAAGATA+TGG 0.448950 3.2:+52939282 None:intergenic
CCATAATATGGATCCTGATA+AGG 0.451848 3.2:+52940417 None:intergenic
CTTCAGACTCTGCGGAAACC+TGG 0.454407 3.2:-52939119 MS.gene04098:CDS
TCTAAAGCACCTGATTGATT+GGG 0.457401 3.2:+52940939 None:intergenic
CCTCTGCGATGCCTCGTTCG+AGG 0.460703 3.2:+52938945 None:intergenic
TCTTGCATCTTGTCGCATGT+TGG 0.462937 3.2:+52939089 None:intergenic
ACAATTGTTGTTGTTATGGT+AGG 0.464965 3.2:+52939041 None:intergenic
ACAATTGTATGCAATCTTCA+AGG 0.466927 3.2:-52939026 MS.gene04098:CDS
TGGAAGAAGGGGACTGTTCA+GGG 0.467131 3.2:-52938987 MS.gene04098:CDS
TTGAGAAGGGCAAGAGGCAC+CGG 0.467176 3.2:-52939249 MS.gene04098:CDS
CCTGCTGCTCCCAATCAATC+AGG 0.469165 3.2:-52940948 MS.gene04098:intron
CCTGATTGATTGGGAGCAGC+AGG 0.471231 3.2:+52940948 None:intergenic
AATGCCTTTGCCCCTTGAGA+TGG 0.476507 3.2:-52940203 MS.gene04098:CDS
GTCTTCGCCTCAGAATTCCT+TGG 0.480874 3.2:+52940146 None:intergenic
ATTGATTGCGACGACAAGAC+TGG 0.480972 3.2:+52939168 None:intergenic
ACTCCTCAGCTGGAACTTGT+TGG 0.498120 3.2:-52940695 MS.gene04098:CDS
TCGGGAAAGGATAATGGCTC+TGG 0.498937 3.2:-52939192 MS.gene04098:CDS
ATTGGATTCTGAATCACCAT+TGG 0.502864 3.2:+52941040 None:intergenic
CAGGGTGAAAGAGTGGAAGA+AGG 0.503255 3.2:-52939000 MS.gene04098:CDS
TTGGATTCTGAATCACCATT+GGG 0.505994 3.2:+52941041 None:intergenic
TTTCTTTGCAAATCGTCCTC+CGG 0.509061 3.2:+52939230 None:intergenic
AAAACTGATGGTGAGGCCTC+GGG 0.514204 3.2:-52939210 MS.gene04098:CDS
GAACCTTGGTGGCGTGGTGT+TGG 0.516801 3.2:-52941119 MS.gene04098:CDS
CCTCACACAGACTCCTCAGC+TGG 0.517659 3.2:-52940705 MS.gene04098:CDS
GAAGCTCATAAAATCTAGAA+AGG 0.519482 3.2:-52940095 MS.gene04098:intron
GTGCTAAAGCAGAGCTTGAA+AGG 0.520912 3.2:-52940117 MS.gene04098:CDS
AGGGTGAAAGAGTGGAAGAA+GGG 0.525419 3.2:-52938999 MS.gene04098:CDS
TGATGGTGAGGCCTCGGGAA+AGG 0.531610 3.2:-52939205 MS.gene04098:CDS
GTGGTGTTTATTCTGAACCT+TGG 0.535143 3.2:-52941133 MS.gene04098:CDS
CAGGTTCTTGAGCCATCTCA+AGG 0.541180 3.2:+52940191 None:intergenic
AGCTTATCCTCACCAGCCGT+TGG 0.544838 3.2:-52940382 MS.gene04098:intron
TCTCACTATTGGACAAAGAC+TGG 0.550556 3.2:+52941009 None:intergenic
GACATCAGCATGCTTTGAGA+AGG 0.559068 3.2:-52939263 MS.gene04098:CDS
TGAGCCATCTCAAGGGGCAA+AGG 0.560137 3.2:+52940199 None:intergenic
CAGGTTTCCGCAGAGTCTGA+AGG 0.567519 3.2:+52939120 None:intergenic
GATCCTCATTCCTTTCAGCC+CGG 0.568473 3.2:-52941155 MS.gene04098:CDS
ATAAACACCACCGGGCTGAA+AGG 0.570819 3.2:+52941145 None:intergenic
AAGGTATCAGGGTGAAAGAG+TGG 0.579884 3.2:-52939007 MS.gene04098:CDS
GTGTTTATTCTGAACCTTGG+TGG 0.581264 3.2:-52941130 MS.gene04098:CDS
TCACATACCAACGGCTGGTG+AGG 0.582069 3.2:+52940375 None:intergenic
AGGTTCAGAATAAACACCAC+CGG 0.582494 3.2:+52941136 None:intergenic
GGAAGATGATGATGCTGCTA+AGG 0.583652 3.2:-52940979 MS.gene04098:CDS
TATTCTGAACCTTGGTGGCG+TGG 0.589853 3.2:-52941125 MS.gene04098:CDS
TAACGTCACATACCAACGGC+TGG 0.590772 3.2:+52940370 None:intergenic
TGCAAAGAAAACTGATGGTG+AGG 0.591393 3.2:-52939217 MS.gene04098:CDS
GGATCAAACGAAAATGGTGG+TGG 0.592838 3.2:-52939066 MS.gene04098:CDS
GGAAATTACGGACAAGAACA+AGG 0.600249 3.2:-52940770 MS.gene04098:CDS
TTATCAGGATCCATATTATG+GGG 0.600718 3.2:-52940415 MS.gene04098:CDS
AGGTTCTTGAGCCATCTCAA+GGG 0.605218 3.2:+52940192 None:intergenic
CCTCATTCCTTTCAGCCCGG+TGG 0.605967 3.2:-52941152 MS.gene04098:CDS
ATGCAATCTTCAAGGTATCA+GGG 0.607213 3.2:-52939018 MS.gene04098:CDS
CATGCTTTGAGAAGGGCAAG+AGG 0.607747 3.2:-52939255 MS.gene04098:CDS
GGTTCTTGAGCCATCTCAAG+GGG 0.609159 3.2:+52940193 None:intergenic
GTCCAATAGTGAGATGAATG+AGG 0.611764 3.2:-52941000 MS.gene04098:CDS
GATTCAGAATCCAATGAGGA+AGG 0.616324 3.2:-52941032 MS.gene04098:CDS
ACATCAGCATGCTTTGAGAA+GGG 0.618856 3.2:-52939262 MS.gene04098:CDS
GACTGTTCAGGGCAGCTACG+TGG 0.623934 3.2:-52938976 MS.gene04098:CDS
CGATTTGCAAAGAAAACTGA+TGG 0.624607 3.2:-52939222 MS.gene04098:CDS
CCACCGGGCTGAAAGGAATG+AGG 0.626610 3.2:+52941152 None:intergenic
GGCAAAGGCATTCTGGCATG+AGG 0.634023 3.2:+52940214 None:intergenic
AGAAGGGCAAGAGGCACCGG+AGG 0.637214 3.2:-52939246 MS.gene04098:CDS
GGGTGAAAGAGTGGAAGAAG+GGG 0.642943 3.2:-52938998 MS.gene04098:CDS
CCAGCTGAGGAGTCTGTGTG+AGG 0.649225 3.2:+52940705 None:intergenic
GGTTCAGAATAAACACCACC+GGG 0.650774 3.2:+52941137 None:intergenic
AACAATACCAAGGAATTCTG+AGG 0.651910 3.2:-52940153 MS.gene04098:CDS
AGAGCCATTATCCTTTCCCG+AGG 0.653284 3.2:+52939194 None:intergenic
ACCATTGGGACAATCAAGAG+AGG 0.663692 3.2:+52941055 None:intergenic
TGAGGCACTCCTATAAAAGG+AGG 0.667807 3.2:+52940232 None:intergenic
TGGAAGCATCTCCTCGAACG+AGG 0.669556 3.2:-52938956 MS.gene04098:CDS
AAGGAATGAGGATCTGACCT+CGG 0.671701 3.2:+52941164 None:intergenic
TGACCAACAAGTTCCAGCTG+AGG 0.675734 3.2:+52940692 None:intergenic
TATCAGGATCCATATTATGG+GGG 0.690554 3.2:-52940414 MS.gene04098:CDS
AGAGGATCAAACGAAAATGG+TGG 0.692972 3.2:-52939069 MS.gene04098:CDS
GTGAACGCTAAACAATACCA+AGG 0.697540 3.2:-52940163 MS.gene04098:CDS
AACATGCGACAAGATGCAAG+AGG 0.706089 3.2:-52939087 MS.gene04098:CDS
TATCCAACACCACGCCACCA+AGG 0.707510 3.2:+52941116 None:intergenic
TGGTGATTCAGAATCCAATG+AGG 0.715370 3.2:-52941036 MS.gene04098:CDS
CCTCGAACGAGGCATCGCAG+AGG 0.718093 3.2:-52938945 MS.gene04098:CDS
CCGAAACTGCAAATCAACCG+AGG 0.722272 3.2:-52941181 MS.gene04098:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATTTACTAACAATTAAATA+GGG - chr3.2:52939217-52939236 MS.gene04098:CDS 10.0%
!! TTATTTACTAACAATTAAAT+AGG - chr3.2:52939216-52939235 MS.gene04098:CDS 10.0%
!!! TATAAATGTTTCTAATATAT+AGG - chr3.2:52940266-52940285 MS.gene04098:intron 10.0%
!!! TTTACATTTTTTTTTTTTGA+AGG + chr3.2:52940415-52940434 None:intergenic 10.0%
!! AAAAAATAACAATAAAGCTT+AGG + chr3.2:52939473-52939492 None:intergenic 15.0%
!! ATTTACTAACAATTAAATAG+GGG - chr3.2:52939218-52939237 MS.gene04098:CDS 15.0%
!!! TATTTTTTTTTCTTCTTGAT+AGG - chr3.2:52939330-52939349 MS.gene04098:intron 15.0%
!! ACTGCTTAAAAAAAAATCAA+AGG + chr3.2:52940306-52940325 None:intergenic 20.0%
!! ATCAAGAAAATAGAACAAAA+TGG + chr3.2:52939803-52939822 None:intergenic 20.0%
!! CATCTAATTTAATGTTTAGA+TGG - chr3.2:52940479-52940498 MS.gene04098:intron 20.0%
!! TCTTGATTAATGGTAATATT+TGG - chr3.2:52939816-52939835 MS.gene04098:intron 20.0%
!!! ACCAAATACTATTGATTTAA+AGG - chr3.2:52939294-52939313 MS.gene04098:intron 20.0%
!!! GGATATTTGTCTTTTTTATA+TGG - chr3.2:52940099-52940118 MS.gene04098:CDS 20.0%
!!! TCAAATCAGTAATTTTATTC+TGG - chr3.2:52939543-52939562 MS.gene04098:intron 20.0%
!!! TGTTCTATTTTCTTGATTAA+TGG - chr3.2:52939806-52939825 MS.gene04098:intron 20.0%
!!! TTACTACATAAACTTTTTGT+GGG - chr3.2:52940660-52940679 MS.gene04098:intron 20.0%
!!! TTTACTACATAAACTTTTTG+TGG - chr3.2:52940659-52940678 MS.gene04098:intron 20.0%
! AAAAAAAATCAAAGGCTCTA+TGG + chr3.2:52940298-52940317 None:intergenic 25.0%
! AAAAAAGACAAATATCCCAA+AGG + chr3.2:52940096-52940115 None:intergenic 25.0%
! AAAAGAATTGGAAGAATACT+AGG + chr3.2:52939662-52939681 None:intergenic 25.0%
! ATTCGTGCATATAATTTCAA+TGG - chr3.2:52939583-52939602 MS.gene04098:intron 25.0%
! GCCTTTAAATCAATAGTATT+TGG + chr3.2:52939298-52939317 None:intergenic 25.0%
! GTCTTATGAAATTGTGTAAA+AGG + chr3.2:52940142-52940161 None:intergenic 25.0%
! TTCTTCTTGATAGGAAATTA+CGG - chr3.2:52939339-52939358 MS.gene04098:intron 25.0%
!! ATGATATTTTCCTTTCCTTT+GGG - chr3.2:52940078-52940097 MS.gene04098:intron 25.0%
!! TATGATATTTTCCTTTCCTT+TGG - chr3.2:52940077-52940096 MS.gene04098:intron 25.0%
!!! TGTCTTTTTTATATGGAGAA+AGG - chr3.2:52940106-52940125 MS.gene04098:CDS 25.0%
ACAATTGTATGCAATCTTCA+AGG - chr3.2:52941095-52941114 MS.gene04098:CDS 30.0%
CCATTATTATGCTGTATTGA+CGG - chr3.2:52940340-52940359 MS.gene04098:intron 30.0%
CTTAACAACTTGAAAGCAAT+TGG + chr3.2:52939503-52939522 None:intergenic 30.0%
CTTATCAGGATCCATATTAT+GGG - chr3.2:52939705-52939724 MS.gene04098:intron 30.0%
GAAGCTCATAAAATCTAGAA+AGG - chr3.2:52940026-52940045 MS.gene04098:intron 30.0%
TAACAATAAAGCTTAGGCAA+AGG + chr3.2:52939467-52939486 None:intergenic 30.0%
TAGGGGAAAAATAAACAGAT+TGG - chr3.2:52939235-52939254 MS.gene04098:CDS 30.0%
TCCATATAAAGACTAAGCAA+CGG + chr3.2:52940164-52940183 None:intergenic 30.0%
TGCACAAATGTCAAGAAAAA+TGG - chr3.2:52940609-52940628 MS.gene04098:intron 30.0%
TGTCTAGATTCATGAAGATA+TGG + chr3.2:52940842-52940861 None:intergenic 30.0%
TTATCAGGATCCATATTATG+GGG - chr3.2:52939706-52939725 MS.gene04098:intron 30.0%
! ACAATTGTTGTTGTTATGGT+AGG + chr3.2:52941083-52941102 None:intergenic 30.0%
! GCATACAATTGTTGTTGTTA+TGG + chr3.2:52941087-52941106 None:intergenic 30.0%
! TTAATCTGTTACTTGCTTCA+AGG - chr3.2:52939771-52939790 MS.gene04098:intron 30.0%
! TTGTTGCTTGTTTCAAAAGT+GGG + chr3.2:52940459-52940478 None:intergenic 30.0%
AAAAATAAGCTCTCAGATGC+AGG - chr3.2:52940566-52940585 MS.gene04098:intron 35.0%
AACAATACCAAGGAATTCTG+AGG - chr3.2:52939968-52939987 MS.gene04098:intron 35.0%
ACAATCAAGAGAGGATGAAT+TGG + chr3.2:52939060-52939079 None:intergenic 35.0%
ACTACATACACTGGCAAAAT+TGG + chr3.2:52940693-52940712 None:intergenic 35.0%
AGACAAATATCCCAAAGGAA+AGG + chr3.2:52940091-52940110 None:intergenic 35.0%
AGATTAACGTCACATACCAA+CGG + chr3.2:52939758-52939777 None:intergenic 35.0%
ATGAATGTGACTACATACAC+TGG + chr3.2:52940702-52940721 None:intergenic 35.0%
ATGTGCTACAAATCCTTATC+AGG - chr3.2:52939691-52939710 MS.gene04098:intron 35.0%
ATTGGATTCTGAATCACCAT+TGG + chr3.2:52939084-52939103 None:intergenic 35.0%
CCATAATATGGATCCTGATA+AGG + chr3.2:52939707-52939726 None:intergenic 35.0%
CCGTCAATACAGCATAATAA+TGG + chr3.2:52940343-52940362 None:intergenic 35.0%
CCTTATCAGGATCCATATTA+TGG - chr3.2:52939704-52939723 MS.gene04098:intron 35.0%
CGATTTGCAAAGAAAACTGA+TGG - chr3.2:52940899-52940918 MS.gene04098:intron 35.0%
GGACTCATGCAAGTAAAAAA+TGG + chr3.2:52940767-52940786 None:intergenic 35.0%
GTCTCACTTGAAACATATTC+TGG + chr3.2:52940788-52940807 None:intergenic 35.0%
TATCAGGATCCATATTATGG+GGG - chr3.2:52939707-52939726 MS.gene04098:intron 35.0%
TATCCTTGTCTGCAAGAATT+AGG - chr3.2:52940538-52940557 MS.gene04098:intron 35.0%
TCGCAATCAATTAGTTCATC+TGG - chr3.2:52940965-52940984 MS.gene04098:CDS 35.0%
TGTTTAGCGTTCACATAAAC+AGG + chr3.2:52939952-52939971 None:intergenic 35.0%
TTCCTCATTCATCTCACTAT+TGG + chr3.2:52939126-52939145 None:intergenic 35.0%
TTGGATTCTGAATCACCATT+GGG + chr3.2:52939083-52939102 None:intergenic 35.0%
! ACCGTTGCTTAGTCTTTATA+TGG - chr3.2:52940160-52940179 MS.gene04098:CDS 35.0%
! ATGCAATCTTCAAGGTATCA+GGG - chr3.2:52941103-52941122 MS.gene04098:CDS 35.0%
! GTTGTTGCTTGTTTCAAAAG+TGG + chr3.2:52940460-52940479 None:intergenic 35.0%
! TAGGGATATCCTCCTTTTAT+AGG - chr3.2:52939880-52939899 MS.gene04098:intron 35.0%
! TATGCAATCTTCAAGGTATC+AGG - chr3.2:52941102-52941121 MS.gene04098:CDS 35.0%
! TCTAAAGCACCTGATTGATT+GGG + chr3.2:52939185-52939204 None:intergenic 35.0%
! TCTTCCAATTCTTTTGATGC+AGG - chr3.2:52939667-52939686 MS.gene04098:intron 35.0%
!! TTCTAAAGCACCTGATTGAT+TGG + chr3.2:52939186-52939205 None:intergenic 35.0%
AGAGGATCAAACGAAAATGG+TGG - chr3.2:52941052-52941071 MS.gene04098:CDS 40.0%
AGCTTGTAGTTGCATGCATT+TGG - chr3.2:52939623-52939642 MS.gene04098:intron 40.0%
AGGTTCAGAATAAACACCAC+CGG + chr3.2:52938988-52939007 None:intergenic 40.0%
ATACACTGGCAAAATTGGAG+TGG + chr3.2:52940688-52940707 None:intergenic 40.0%
CATGCCTGCATCAAAAGAAT+TGG + chr3.2:52939674-52939693 None:intergenic 40.0%
GATTCAGAATCCAATGAGGA+AGG - chr3.2:52939089-52939108 MS.gene04098:CDS 40.0%
GCAAGAGGATCAAACGAAAA+TGG - chr3.2:52941049-52941068 MS.gene04098:CDS 40.0%
GGAAATTACGGACAAGAACA+AGG - chr3.2:52939351-52939370 MS.gene04098:intron 40.0%
GTCCAATAGTGAGATGAATG+AGG - chr3.2:52939121-52939140 MS.gene04098:CDS 40.0%
GTGAACGCTAAACAATACCA+AGG - chr3.2:52939958-52939977 MS.gene04098:intron 40.0%
GTGGTGTTTATTCTGAACCT+TGG - chr3.2:52938988-52939007 MS.gene04098:CDS 40.0%
GTGTTTATTCTGAACCTTGG+TGG - chr3.2:52938991-52939010 MS.gene04098:CDS 40.0%
TATATGCGCTGTTGTCTGTA+AGG - chr3.2:52940237-52940256 MS.gene04098:CDS 40.0%
TCTCACTATTGGACAAAGAC+TGG + chr3.2:52939115-52939134 None:intergenic 40.0%
TGGTGATTCAGAATCCAATG+AGG - chr3.2:52939085-52939104 MS.gene04098:CDS 40.0%
TGTTTAGATGGATCTGCTGT+TGG - chr3.2:52940491-52940510 MS.gene04098:intron 40.0%
TTTCTTTGCAAATCGTCCTC+CGG + chr3.2:52940894-52940913 None:intergenic 40.0%
! TGCAAAGAAAACTGATGGTG+AGG - chr3.2:52940904-52940923 MS.gene04098:intron 40.0%
!! ACATCAGCATGCTTTGAGAA+GGG - chr3.2:52940859-52940878 MS.gene04098:intron 40.0%
!! TTGATTTGCAGTTTCGGACT+TGG + chr3.2:52938937-52938956 None:intergenic 40.0%
AACATGCGACAAGATGCAAG+AGG - chr3.2:52941034-52941053 MS.gene04098:CDS 45.0%
AAGGAATGAGGATCTGACCT+CGG + chr3.2:52938960-52938979 None:intergenic 45.0%
ACCATTGGGACAATCAAGAG+AGG + chr3.2:52939069-52939088 None:intergenic 45.0%
AGGGTGAAAGAGTGGAAGAA+GGG - chr3.2:52941122-52941141 MS.gene04098:CDS 45.0%
AGGTTCTTGAGCCATCTCAA+GGG + chr3.2:52939932-52939951 None:intergenic 45.0%
ATTGATTGCGACGACAAGAC+TGG + chr3.2:52940956-52940975 None:intergenic 45.0%
CAGCCTAATTCTTGCAGACA+AGG + chr3.2:52940544-52940563 None:intergenic 45.0%
CTTGCATCTTGTCGCATGTT+GGG + chr3.2:52941034-52941053 None:intergenic 45.0%
GGATCAAACGAAAATGGTGG+TGG - chr3.2:52941055-52941074 MS.gene04098:CDS 45.0%
GGTTCAGAATAAACACCACC+GGG + chr3.2:52938987-52939006 None:intergenic 45.0%
GTAGTTGCATGCATTTGGAC+TGG - chr3.2:52939628-52939647 MS.gene04098:intron 45.0%
GTGCTAAAGCAGAGCTTGAA+AGG - chr3.2:52940004-52940023 MS.gene04098:intron 45.0%
TCCTCTCTTGATTGTCCCAA+TGG - chr3.2:52939065-52939084 MS.gene04098:CDS 45.0%
TCTTGCATCTTGTCGCATGT+TGG + chr3.2:52941035-52941054 None:intergenic 45.0%
TTAGATGGATCTGCTGTTGG+AGG - chr3.2:52940494-52940513 MS.gene04098:intron 45.0%
! AAGGTATCAGGGTGAAAGAG+TGG - chr3.2:52941114-52941133 MS.gene04098:CDS 45.0%
! ACTTTTGCCTTCAGACTCTG+CGG - chr3.2:52940994-52941013 MS.gene04098:CDS 45.0%
! GCATGAGGCACTCCTATAAA+AGG + chr3.2:52939895-52939914 None:intergenic 45.0%
! GGAAGATGATGATGCTGCTA+AGG - chr3.2:52939142-52939161 MS.gene04098:CDS 45.0%
! TCCATATTATGGGGGCATGA+TGG - chr3.2:52939715-52939734 MS.gene04098:intron 45.0%
! TGAGGCACTCCTATAAAAGG+AGG + chr3.2:52939892-52939911 None:intergenic 45.0%
! TGCATGCATTTGGACTGGAT+GGG - chr3.2:52939633-52939652 MS.gene04098:intron 45.0%
! TTGCATGCATTTGGACTGGA+TGG - chr3.2:52939632-52939651 MS.gene04098:intron 45.0%
!! CCTCGGTTGATTTGCAGTTT+CGG + chr3.2:52938943-52938962 None:intergenic 45.0%
!! GACATCAGCATGCTTTGAGA+AGG - chr3.2:52940858-52940877 MS.gene04098:intron 45.0%
!! AATAGTAAAAAAAAAAAATA+TGG + chr3.2:52939861-52939880 None:intergenic 5.0%
!!! ATTTTTTTTTTTTACTATTA+GGG - chr3.2:52939862-52939881 MS.gene04098:intron 5.0%
!!! TATTTTTTTTTTTTACTATT+AGG - chr3.2:52939861-52939880 MS.gene04098:intron 5.0%
AAGCTCTCAGATGCAGGTAG+TGG - chr3.2:52940572-52940591 MS.gene04098:intron 50.0%
AATGCCTTTGCCCCTTGAGA+TGG - chr3.2:52939918-52939937 MS.gene04098:intron 50.0%
ACTCCTCAGCTGGAACTTGT+TGG - chr3.2:52939426-52939445 MS.gene04098:intron 50.0%
AGAGCCATTATCCTTTCCCG+AGG + chr3.2:52940930-52940949 None:intergenic 50.0%
ATAAACACCACCGGGCTGAA+AGG + chr3.2:52938979-52938998 None:intergenic 50.0%
CAGGGTGAAAGAGTGGAAGA+AGG - chr3.2:52941121-52941140 MS.gene04098:CDS 50.0%
CAGGTTCTTGAGCCATCTCA+AGG + chr3.2:52939933-52939952 None:intergenic 50.0%
CCAGACATTGTTTGCGCTAC+AGG + chr3.2:52939035-52939054 None:intergenic 50.0%
CCGAAACTGCAAATCAACCG+AGG - chr3.2:52938940-52938959 MS.gene04098:CDS 50.0%
CCTGTAGCGCAAACAATGTC+TGG - chr3.2:52939032-52939051 MS.gene04098:CDS 50.0%
GATCCTCATTCCTTTCAGCC+CGG - chr3.2:52938966-52938985 MS.gene04098:CDS 50.0%
GCCATCATGCCCCCATAATA+TGG + chr3.2:52939719-52939738 None:intergenic 50.0%
GGGTGAAAGAGTGGAAGAAG+GGG - chr3.2:52941123-52941142 MS.gene04098:CDS 50.0%
GGTTCTTGAGCCATCTCAAG+GGG + chr3.2:52939931-52939950 None:intergenic 50.0%
GTCTTCGCCTCAGAATTCCT+TGG + chr3.2:52939978-52939997 None:intergenic 50.0%
TAACGTCACATACCAACGGC+TGG + chr3.2:52939754-52939773 None:intergenic 50.0%
TCGCATGTTGGGAGAATTCC+AGG + chr3.2:52941023-52941042 None:intergenic 50.0%
TGACCAACAAGTTCCAGCTG+AGG + chr3.2:52939432-52939451 None:intergenic 50.0%
TGGAAGAAGGGGACTGTTCA+GGG - chr3.2:52941134-52941153 MS.gene04098:CDS 50.0%
TGGAGGCTCATGGAAGTTAG+AGG - chr3.2:52940511-52940530 MS.gene04098:intron 50.0%
! AAAACTGATGGTGAGGCCTC+GGG - chr3.2:52940911-52940930 MS.gene04098:intron 50.0%
! GAAAACTGATGGTGAGGCCT+CGG - chr3.2:52940910-52940929 MS.gene04098:intron 50.0%
! TCGGGAAAGGATAATGGCTC+TGG - chr3.2:52940929-52940948 MS.gene04098:intron 50.0%
!! CAAAGACTGGCCTTCCTCAT+TGG + chr3.2:52939102-52939121 None:intergenic 50.0%
!! CATGCTTTGAGAAGGGCAAG+AGG - chr3.2:52940866-52940885 MS.gene04098:intron 50.0%
!! TATTCTGAACCTTGGTGGCG+TGG - chr3.2:52938996-52939015 MS.gene04098:CDS 50.0%
AGCTTATCCTCACCAGCCGT+TGG - chr3.2:52939739-52939758 MS.gene04098:intron 55.0%
CAGGTTTCCGCAGAGTCTGA+AGG + chr3.2:52941004-52941023 None:intergenic 55.0%
CCTGATTGATTGGGAGCAGC+AGG + chr3.2:52939176-52939195 None:intergenic 55.0%
CCTGCTGCTCCCAATCAATC+AGG - chr3.2:52939173-52939192 MS.gene04098:CDS 55.0%
CTTCAGACTCTGCGGAAACC+TGG - chr3.2:52941002-52941021 MS.gene04098:CDS 55.0%
GAGGCCTCGGGAAAGGATAA+TGG - chr3.2:52940923-52940942 MS.gene04098:intron 55.0%
GATCTGCTGTTGGAGGCTCA+TGG - chr3.2:52940501-52940520 MS.gene04098:intron 55.0%
GTGGAAGAAGGGGACTGTTC+AGG - chr3.2:52941133-52941152 MS.gene04098:CDS 55.0%
TATCCAACACCACGCCACCA+AGG + chr3.2:52939008-52939027 None:intergenic 55.0%
TCACATACCAACGGCTGGTG+AGG + chr3.2:52939749-52939768 None:intergenic 55.0%
TGAGCCATCTCAAGGGGCAA+AGG + chr3.2:52939925-52939944 None:intergenic 55.0%
! TTGAGAAGGGCAAGAGGCAC+CGG - chr3.2:52940872-52940891 MS.gene04098:intron 55.0%
!! CTCAAGGGGCAAAGGCATTC+TGG + chr3.2:52939917-52939936 None:intergenic 55.0%
!! GGCAAAGGCATTCTGGCATG+AGG + chr3.2:52939910-52939929 None:intergenic 55.0%
!! TGGAAGCATCTCCTCGAACG+AGG - chr3.2:52941165-52941184 MS.gene04098:CDS 55.0%
CCACCGGGCTGAAAGGAATG+AGG + chr3.2:52938972-52938991 None:intergenic 60.0%
CCAGCTGAGGAGTCTGTGTG+AGG + chr3.2:52939419-52939438 None:intergenic 60.0%
CCTCACACAGACTCCTCAGC+TGG - chr3.2:52939416-52939435 MS.gene04098:intron 60.0%
CCTCATTCCTTTCAGCCCGG+TGG - chr3.2:52938969-52938988 MS.gene04098:CDS 60.0%
GACTGTTCAGGGCAGCTACG+TGG - chr3.2:52941145-52941164 MS.gene04098:CDS 60.0%
! TGATGGTGAGGCCTCGGGAA+AGG - chr3.2:52940916-52940935 MS.gene04098:intron 60.0%
!! GAACCTTGGTGGCGTGGTGT+TGG - chr3.2:52939002-52939021 MS.gene04098:CDS 60.0%
CCTCTGCGATGCCTCGTTCG+AGG + chr3.2:52941179-52941198 None:intergenic 65.0%
!! AGAAGGGCAAGAGGCACCGG+AGG - chr3.2:52940875-52940894 MS.gene04098:intron 65.0%
!! CCTCGAACGAGGCATCGCAG+AGG - chr3.2:52941176-52941195 MS.gene04098:CDS 65.0%


Chromosome Type Strat End Strand Name
chr3.2 gene 52938927 52941216 52938927 ID=MS.gene04098
chr3.2 mRNA 52938927 52941216 52938927 ID=MS.gene04098.t1;Parent=MS.gene04098
chr3.2 exon 52940949 52941216 52940949 ID=MS.gene04098.t1.exon1;Parent=MS.gene04098.t1
chr3.2 CDS 52940949 52941216 52940949 ID=cds.MS.gene04098.t1;Parent=MS.gene04098.t1
chr3.2 exon 52940685 52940791 52940685 ID=MS.gene04098.t1.exon2;Parent=MS.gene04098.t1
chr3.2 CDS 52940685 52940791 52940685 ID=cds.MS.gene04098.t1;Parent=MS.gene04098.t1
chr3.2 exon 52940383 52940454 52940383 ID=MS.gene04098.t1.exon3;Parent=MS.gene04098.t1
chr3.2 CDS 52940383 52940454 52940383 ID=cds.MS.gene04098.t1;Parent=MS.gene04098.t1
chr3.2 exon 52940096 52940260 52940096 ID=MS.gene04098.t1.exon4;Parent=MS.gene04098.t1
chr3.2 CDS 52940096 52940260 52940096 ID=cds.MS.gene04098.t1;Parent=MS.gene04098.t1
chr3.2 exon 52938927 52939304 52938927 ID=MS.gene04098.t1.exon5;Parent=MS.gene04098.t1
chr3.2 CDS 52938927 52939304 52938927 ID=cds.MS.gene04098.t1;Parent=MS.gene04098.t1
Gene Sequence

>MS.gene04098

ATGCAATCCAAGTCCGAAACTGCAAATCAACCGAGGTCAGATCCTCATTCCTTTCAGCCCGGTGGTGTTTATTCTGAACCTTGGTGGCGTGGTGTTGGATACAATCCTGTAGCGCAAACAATGTCTGGTGCCAATTCATCCTCTCTTGATTGTCCCAATGGTGATTCAGAATCCAATGAGGAAGGCCAGTCTTTGTCCAATAGTGAGATGAATGAGGAAGATGATGATGCTGCTAAGGATTCACAGCCTGCTGCTCCCAATCAATCAGGTGCTTTAGAATATCGTGTAATTATTTACTAACAATTAAATAGGGGAAAAATAAACAGATTGGCACTTTAAACTACATTTGATGAAATTTTTTCATTCGACCAAATACTATTGATTTAAAGGCACTAAAATACAGTATTTTTTTTTCTTCTTGATAGGAAATTACGGACAAGAACAAGGAATGCAGAATACTGCATCATCTGCAGTTATTCGCGAAGAATGCCTCACACAGACTCCTCAGCTGGAACTTGTTGGTCATTCAATTGTAAGCCTTTGCCTAAGCTTTATTGTTATTTTTTATTTATACCAATTGCTTTCAAGTTGTTAAGATAAACATTTTTTGCAAACATCAAATCAGTAATTTTATTCTGGAACACAAATCTTTGCTGATTCGTGCATATAATTTCAATGGAAAATATGTTATTATAGAGCTTGTAGTTGCATGCATTTGGACTGGATGGGACTCCTAGTATTCTTCCAATTCTTTTGATGCAGGCATGTGCTACAAATCCTTATCAGGATCCATATTATGGGGGCATGATGGCAGCTTATCCTCACCAGCCGTTGGTATGTGACGTTAATCTGTTACTTGCTTCAAGGTTATTGCCATTTTGTTCTATTTTCTTGATTAATGGTAATATTTGGATAACATTGTGATATTTAACCATATTTTTTTTTTTTACTATTAGGGATATCCTCCTTTTATAGGAGTGCCTCATGCCAGAATGCCTTTGCCCCTTGAGATGGCTCAAGAACCTGTTTATGTGAACGCTAAACAATACCAAGGAATTCTGAGGCGAAGACAAGCTCGTGCTAAAGCAGAGCTTGAAAGGAAGCTCATAAAATCTAGAAAGGTACGAATTCGTAAAAGCTAATGCTTCTTTATGATATTTTCCTTTCCTTTGGGATATTTGTCTTTTTTATATGGAGAAAGGCTTCTGTCTACCTTTTACACAATTTCATAAGACCGTTGCTTAGTCTTTATATGGAATATTTTAAAAATATATATCAGCGTGCATGTAGTAGCAAGTCTTTGTGTATGTTATATGCGCTGTTGTCTGTAAGGAGAAACTATAAATGTTTCTAATATATAGGACTCAACCATAGAGCCTTTGATTTTTTTTTAAGCAGTAATGTTTGTTGTATCCATTATTATGCTGTATTGACGGCGACAAAAGTCAGTTCTTGTTTACTTAATTAGAATTATGTAAAAACATTCCTTCAAAAAAAAAAAATGTAAAAACATTTGTGAACAACAATCACCCACTTTTGAAACAAGCAACAACATCTAATTTAATGTTTAGATGGATCTGCTGTTGGAGGCTCATGGAAGTTAGAGGATTGTATCCTTGTCTGCAAGAATTAGGCTGTAAAAAATAAGCTCTCAGATGCAGGTAGTGGTAATTATATATTATTGCACAAATGTCAAGAAAAATGGTATTTGAAATTAGATTTCTAAAATGATTTTACTACATAAACTTTTTGTGGGTTCCACTCCAATTTTGCCAGTGTATGTAGTCACATTCATGTAAAATGAGAAAAGCAAATAGAGCTAAGTTGCTGATTTTCACCATTTTTTACTTGCATGAGTCCAGAATATGTTTCAAGTGAGACAGAACTTGATGCTAACATCTATTATTTTCAGCCATATCTTCATGAATCTAGACATCAGCATGCTTTGAGAAGGGCAAGAGGCACCGGAGGACGATTTGCAAAGAAAACTGATGGTGAGGCCTCGGGAAAGGATAATGGCTCTGGTCCAGTCTTGTCGTCGCAATCAATTAGTTCATCTGGTTCAGAACTTTTGCCTTCAGACTCTGCGGAAACCTGGAATTCTCCCAACATGCGACAAGATGCAAGAGGATCAAACGAAAATGGTGGTGGCTCCTACCATAACAACAACAATTGTATGCAATCTTCAAGGTATCAGGGTGAAAGAGTGGAAGAAGGGGACTGTTCAGGGCAGCTACGTGGAAGCATCTCCTCGAACGAGGCATCGCAGAGGCGTCTTGCTATTCAGTAG
Protein sequence

>MS.gene04098.t1

MQSKSETANQPRSDPHSFQPGGVYSEPWWRGVGYNPVAQTMSGANSSSLDCPNGDSESNEEGQSLSNSEMNEEDDDAAKDSQPAAPNQSGNYGQEQGMQNTASSAVIREECLTQTPQLELVGHSIACATNPYQDPYYGGMMAAYPHQPLGYPPFIGVPHARMPLPLEMAQEPVYVNAKQYQGILRRRQARAKAELERKLIKSRKPYLHESRHQHALRRARGTGGRFAKKTDGEASGKDNGSGPVLSSQSISSSGSELLPSDSAETWNSPNMRQDARGSNENGGGSYHNNNNCMQSSRYQGERVEEGDCSGQLRGSISSNEASQRRLAIQ