AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene041001

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene041001.t1 MTR_1g059270 97.802 182 4 0 1 182 133 314 1.32e-131 372
MS.gene041001.t1 MTR_7g092510 81.595 163 29 1 13 174 158 320 1.87e-94 278
MS.gene041001.t1 MTR_1g059270 95.690 116 5 0 1 116 133 248 4.16e-75 226
MS.gene041001.t1 MTR_4g070320 66.667 108 30 2 11 113 122 228 1.13e-42 145
MS.gene041001.t1 MTR_3g116770 69.072 97 30 0 25 121 188 284 1.16e-41 144
MS.gene041001.t1 MTR_3g116770 69.072 97 30 0 25 121 188 284 1.20e-41 144
MS.gene041001.t1 MTR_8g099880 60.976 123 37 5 19 136 134 250 5.08e-41 141
MS.gene041001.t1 MTR_7g053410 62.037 108 36 2 25 132 314 416 9.20e-41 144
MS.gene041001.t1 MTR_7g053410 55.814 129 51 3 25 153 314 436 1.24e-40 144
MS.gene041001.t1 MTR_8g065740 73.256 86 23 0 25 110 302 387 4.01e-40 141
MS.gene041001.t1 MTR_1g017350 48.684 152 57 4 17 147 249 400 3.59e-39 138
MS.gene041001.t1 MTR_5g048860 69.663 89 27 0 25 113 362 450 3.88e-39 140
MS.gene041001.t1 MTR_1g017350 46.429 168 66 5 1 147 236 400 4.61e-39 138
MS.gene041001.t1 MTR_8g012290 60.784 102 40 0 25 126 288 389 4.89e-39 139
MS.gene041001.t1 MTR_8g012290 60.784 102 40 0 25 126 288 389 5.14e-39 139
MS.gene041001.t1 MTR_1g017350 45.614 171 66 5 1 147 236 403 8.82e-39 137
MS.gene041001.t1 MTR_1g017350 45.614 171 66 5 1 147 236 403 1.31e-38 137
MS.gene041001.t1 MTR_8g062240 70.588 85 25 0 25 109 148 232 3.69e-38 132
MS.gene041001.t1 MTR_3g498825 54.545 121 46 2 25 142 144 258 1.07e-37 132
MS.gene041001.t1 MTR_5g037250 78.667 75 16 0 25 99 109 183 5.34e-37 128
MS.gene041001.t1 MTR_6g084120 48.571 105 44 2 1 105 129 223 1.96e-24 96.3
MS.gene041001.t1 MTR_4g131160 48.454 97 40 3 24 116 192 282 1.28e-18 82.4
MS.gene041001.t1 MTR_4g131160 48.454 97 40 3 24 116 195 285 1.32e-18 82.4
MS.gene041001.t1 MTR_1g080890 38.400 125 69 4 28 150 193 311 9.75e-18 79.7
MS.gene041001.t1 MTR_4g065870 47.761 67 35 0 26 92 353 419 7.34e-14 68.9
MS.gene041001.t1 MTR_1g069155 44.928 69 37 1 30 98 319 386 5.88e-13 66.6
MS.gene041001.t1 MTR_4g065870 46.875 64 34 0 26 89 353 416 7.69e-13 65.9
MS.gene041001.t1 MTR_4g033295 43.750 64 36 0 28 91 118 181 9.07e-13 63.9
MS.gene041001.t1 MTR_2g098310 44.615 65 36 0 28 92 332 396 1.06e-12 65.5
MS.gene041001.t1 MTR_4g033295 44.776 67 37 0 26 92 116 182 1.63e-12 63.2
MS.gene041001.t1 MTR_1g070870 48.276 87 39 3 28 109 120 205 6.44e-12 62.8
MS.gene041001.t1 MTR_1g070870 48.276 87 39 3 28 109 123 208 6.71e-12 62.8
MS.gene041001.t1 MTR_1g084980 40.000 70 41 1 31 100 465 533 6.98e-12 63.5
MS.gene041001.t1 MTR_3g449770 31.132 106 71 2 30 135 311 414 7.16e-12 63.2
MS.gene041001.t1 MTR_2g098310 45.312 64 35 0 28 91 332 395 8.56e-12 63.2
MS.gene041001.t1 MTR_1g018090 40.741 81 47 1 12 92 258 337 8.90e-12 62.8
MS.gene041001.t1 MTR_7g099540 43.478 69 38 1 30 98 254 321 9.97e-12 62.8
MS.gene041001.t1 MTR_8g036235 41.791 67 39 0 26 92 314 380 1.72e-11 62.0
MS.gene041001.t1 MTR_1g052470 42.254 71 41 0 26 96 296 366 2.08e-11 62.0
MS.gene041001.t1 MTR_7g092540 39.437 71 43 0 28 98 243 313 2.94e-11 61.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene041001.t1 AT3G57800 67.333 150 41 2 21 162 197 346 1.61e-63 200
MS.gene041001.t1 AT2G42300 69.231 143 30 3 21 163 178 306 4.69e-62 195
MS.gene041001.t1 AT3G57800 51.269 197 41 3 21 162 197 393 3.69e-54 177
MS.gene041001.t1 AT2G42300 83.871 93 15 0 21 113 178 270 3.37e-52 168
MS.gene041001.t1 AT1G26260 52.174 138 58 2 6 136 143 279 1.32e-44 150
MS.gene041001.t1 AT1G26260 52.174 138 58 2 6 136 172 308 2.35e-44 150
MS.gene041001.t1 AT1G26260 52.174 138 58 2 6 136 194 330 4.99e-44 150
MS.gene041001.t1 AT1G26260 52.174 138 58 2 6 136 194 330 4.99e-44 150
MS.gene041001.t1 AT1G26260 52.174 138 58 2 6 136 194 330 4.99e-44 150
MS.gene041001.t1 AT1G26260 52.174 138 58 2 6 136 194 330 4.99e-44 150
MS.gene041001.t1 AT1G68920 61.538 117 39 2 25 136 299 414 2.58e-43 150
MS.gene041001.t1 AT1G68920 61.538 117 39 2 25 136 300 415 2.65e-43 150
MS.gene041001.t1 AT1G68920 61.538 117 39 2 25 136 300 415 2.65e-43 150
MS.gene041001.t1 AT1G68920 61.538 117 39 2 25 136 300 415 2.65e-43 150
MS.gene041001.t1 AT3G23690 54.730 148 58 3 25 163 188 335 1.86e-42 145
MS.gene041001.t1 AT3G07340 71.910 89 25 0 25 113 255 343 1.45e-41 145
MS.gene041001.t1 AT3G07340 71.910 89 25 0 25 113 255 343 2.41e-41 144
MS.gene041001.t1 AT4G34530 56.589 129 49 2 21 149 165 286 2.51e-41 142
MS.gene041001.t1 AT1G10120 58.268 127 46 2 4 123 175 301 7.52e-41 141
MS.gene041001.t1 AT1G10120 58.268 127 46 2 4 123 175 301 7.52e-41 141
MS.gene041001.t1 AT5G48560 69.565 92 27 1 25 115 298 389 9.86e-40 140
MS.gene041001.t1 AT5G48560 69.565 92 27 1 25 115 298 389 1.60e-39 140
MS.gene041001.t1 AT5G50915 56.800 125 46 6 18 135 124 247 1.84e-39 135
MS.gene041001.t1 AT5G50915 56.800 125 46 6 18 135 124 247 1.84e-39 135
MS.gene041001.t1 AT5G50915 56.800 125 46 6 18 135 124 247 2.85e-39 135
MS.gene041001.t1 AT5G50915 56.800 125 46 6 18 135 124 247 2.85e-39 135
MS.gene041001.t1 AT2G18300 55.285 123 45 2 5 127 166 278 1.87e-38 134
MS.gene041001.t1 AT1G59640 80.000 75 15 0 25 99 133 207 5.66e-38 131
MS.gene041001.t1 AT1G59640 67.010 97 32 0 25 121 133 229 1.14e-37 132
MS.gene041001.t1 AT2G18300 58.095 105 40 1 5 109 166 266 5.96e-37 130
MS.gene041001.t1 AT4G36540 54.545 110 50 0 4 113 117 226 6.01e-37 130
MS.gene041001.t1 AT4G36540 54.054 111 51 0 4 114 117 227 6.07e-37 130
MS.gene041001.t1 AT2G18300 58.095 105 40 1 5 109 166 266 1.51e-36 130
MS.gene041001.t1 AT1G18400 70.000 80 24 0 26 105 143 222 1.58e-34 122
MS.gene041001.t1 AT1G18400 70.000 80 24 0 26 105 143 222 2.59e-34 122
MS.gene041001.t1 AT1G73830 69.620 79 24 0 27 105 146 224 6.65e-34 120
MS.gene041001.t1 AT1G73830 69.620 79 24 0 27 105 146 224 6.71e-34 120
MS.gene041001.t1 AT5G62610 73.333 75 20 0 25 99 150 224 7.04e-34 121
MS.gene041001.t1 AT5G62610 73.333 75 20 0 25 99 150 224 7.04e-34 121
MS.gene041001.t1 AT1G25330 67.500 80 26 0 26 105 102 181 1.46e-32 116
MS.gene041001.t1 AT2G42300 85.106 47 7 0 21 67 178 224 9.19e-24 94.0
MS.gene041001.t1 AT2G42300 85.106 47 7 0 21 67 178 224 9.19e-24 94.0
MS.gene041001.t1 AT2G42300 85.106 47 7 0 21 67 178 224 1.05e-23 94.0
MS.gene041001.t1 AT2G24260 59.091 66 26 1 28 93 35 99 1.04e-17 78.2
MS.gene041001.t1 AT4G30980 60.606 66 25 1 28 93 130 194 1.52e-17 78.6
MS.gene041001.t1 AT4G30980 60.606 66 25 1 28 93 178 242 1.75e-17 79.0
MS.gene041001.t1 AT5G58010 59.701 67 26 1 27 93 98 163 2.50e-17 78.2
MS.gene041001.t1 AT2G24260 59.091 66 26 1 28 93 138 202 2.65e-17 78.6
MS.gene041001.t1 AT2G20180 39.560 91 51 2 6 93 182 271 2.41e-14 70.5
MS.gene041001.t1 AT2G20180 39.560 91 51 2 6 93 182 271 2.41e-14 70.5
MS.gene041001.t1 AT2G20180 39.560 91 51 2 6 93 182 271 2.41e-14 70.5
MS.gene041001.t1 AT2G20180 39.560 91 51 2 6 93 253 342 3.21e-14 70.1
MS.gene041001.t1 AT2G20180 39.560 91 51 2 6 93 253 342 3.21e-14 70.1
MS.gene041001.t1 AT2G20180 39.560 91 51 2 6 93 253 342 3.21e-14 70.1
MS.gene041001.t1 AT2G20180 39.560 91 51 2 6 93 253 342 3.21e-14 70.1
MS.gene041001.t1 AT4G28800 42.466 73 41 1 31 103 252 323 1.92e-13 67.8
MS.gene041001.t1 AT2G20180 38.636 88 50 2 6 90 253 339 6.00e-13 66.2
MS.gene041001.t1 AT4G28815 36.082 97 57 2 31 123 71 166 1.10e-12 64.3
MS.gene041001.t1 AT1G09530 40.964 83 45 3 14 93 320 401 2.18e-12 64.7
MS.gene041001.t1 AT1G09530 40.964 83 45 3 14 93 320 401 2.18e-12 64.7
MS.gene041001.t1 AT1G09530 40.964 83 45 3 14 93 320 401 2.18e-12 64.7
MS.gene041001.t1 AT1G09530 40.964 83 45 3 14 93 320 401 2.18e-12 64.7
MS.gene041001.t1 AT1G09530 40.964 83 45 3 14 93 320 401 2.18e-12 64.7
MS.gene041001.t1 AT1G09530 40.964 83 45 3 14 93 320 401 2.18e-12 64.7
MS.gene041001.t1 AT4G28815 36.082 97 57 2 31 123 147 242 4.89e-12 63.5
MS.gene041001.t1 AT4G28790 40.278 72 42 1 31 102 274 344 5.73e-12 63.5
MS.gene041001.t1 AT2G46970 38.750 80 43 2 26 100 216 294 1.35e-11 62.4
MS.gene041001.t1 AT2G46970 38.750 80 43 2 26 100 185 263 1.62e-11 62.4
MS.gene041001.t1 AT2G46970 38.750 80 43 2 26 100 194 272 1.63e-11 62.4
MS.gene041001.t1 AT2G42280 36.667 90 56 1 2 91 254 342 1.82e-11 62.0
MS.gene041001.t1 AT1G51140 45.312 64 35 0 28 91 304 367 2.10e-11 62.0
MS.gene041001.t1 AT4G28800 47.541 61 31 1 31 91 264 323 2.86e-11 61.6
MS.gene041001.t1 AT4G02590 46.154 91 43 3 28 113 83 172 3.21e-11 60.5
MS.gene041001.t1 AT4G02590 46.154 91 43 3 28 113 146 235 4.05e-11 60.8
MS.gene041001.t1 AT4G02590 46.154 91 43 3 28 113 146 235 4.05e-11 60.8
MS.gene041001.t1 AT2G43140 42.424 66 38 0 26 91 132 197 8.03e-11 58.9

Find 43 sgRNAs with CRISPR-Local

Find 285 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTCCATTGTGTGGAATTTC+TGG 0.119338 1.4:-41671072 None:intergenic
TCAAGGTTGAAATCAATTAT+TGG 0.224458 1.4:-41670227 None:intergenic
TGCATTCCACCAACCACTTT+GGG 0.284445 1.4:+41671128 MS.gene041001:CDS
ATCAGGAACAGCATTGGTTT+TGG 0.289474 1.4:+41669573 MS.gene041001:CDS
CAAGGTTGAAATCAATTATT+GGG 0.303962 1.4:-41670226 None:intergenic
AAATTTCCTTTACAGATATC+AGG 0.320893 1.4:+41669556 MS.gene041001:intron
TATGACTCATCGGCAAATTC+AGG 0.337138 1.4:+41671204 MS.gene041001:CDS
CGGAAGCTCCTCGCCGTTGC+CGG 0.341941 1.4:-41666967 None:intergenic
TTTCTGGGGTCATGAAATTA+GGG 0.358922 1.4:-41671167 None:intergenic
TTTCAACCTTGACAGCATAT+TGG 0.387389 1.4:+41670238 MS.gene041001:CDS
AATGAAACTGTTGCAAGATC+TGG 0.393018 1.4:+41667926 MS.gene041001:CDS
ATGCATTCCACCAACCACTT+TGG 0.397314 1.4:+41671127 MS.gene041001:CDS
ATCGCCGCCGACGAGAATTC+CGG 0.408348 1.4:+41666948 MS.gene041001:CDS
GACCAAACCTTGTTGCAACC+TGG 0.459346 1.4:-41667951 None:intergenic
ACAGCGGGTGAAACTGCGTT+AGG 0.478912 1.4:-41671045 None:intergenic
TGCTGTCTGTTTCCATTGTG+TGG 0.479482 1.4:-41671081 None:intergenic
TTACCCTTTCTGCTAAGCTA+TGG 0.495150 1.4:-41667031 None:intergenic
ACCAAACCTTGTTGCAACCT+GGG 0.495296 1.4:-41667950 None:intergenic
TAGCCATAGCTTAGCAGAAA+GGG 0.520877 1.4:+41667028 MS.gene041001:CDS
GGAATTTCTGGCCACACAGC+GGG 0.527591 1.4:-41671060 None:intergenic
CTGTTGCAAGATCTGGTCCC+AGG 0.536713 1.4:+41667933 MS.gene041001:CDS
ACAGATATCAGGAACAGCAT+TGG 0.547071 1.4:+41669567 MS.gene041001:intron
CTGCAGCCAATATGCTGTCA+AGG 0.553773 1.4:-41670244 None:intergenic
CAGCGGGTGAAACTGCGTTA+GGG 0.566488 1.4:-41671044 None:intergenic
GCCGACGAGAATTCCGGCAA+CGG 0.567888 1.4:+41666954 MS.gene041001:CDS
CATTCTGTAGAGATTGCACA+TGG 0.585158 1.4:-41669609 None:intergenic
ACTTCTAAGTTATGACTCAT+CGG 0.587921 1.4:+41671194 MS.gene041001:CDS
GCCGTTGCCGGAATTCTCGT+CGG 0.595821 1.4:-41666955 None:intergenic
ATTGTAGGGAATGTCTCTCA+TGG 0.599541 1.4:+41671011 MS.gene041001:intron
GACAGCAATTTCAGCAATCG+TGG 0.599757 1.4:+41671097 MS.gene041001:CDS
ATAGCCATAGCTTAGCAGAA+AGG 0.599793 1.4:+41667027 MS.gene041001:CDS
CATTCCACCAACCACTTTGG+GGG 0.604196 1.4:+41671130 MS.gene041001:CDS
CGAACTCGAACGTGAACGTA+CGG 0.605120 1.4:-41666987 None:intergenic
GCATTCCACCAACCACTTTG+GGG 0.608496 1.4:+41671129 MS.gene041001:CDS
TGGAATTTCTGGCCACACAG+CGG 0.611227 1.4:-41671061 None:intergenic
GCAATCTCTACAGAATGAAG+TGG 0.617385 1.4:+41669615 MS.gene041001:CDS
ATCTCTACAGAATGAAGTGG+AGG 0.623403 1.4:+41669618 MS.gene041001:CDS
CGAGAATTCCGGCAACGGCG+AGG 0.633666 1.4:+41666959 MS.gene041001:CDS
ACGCAGTTTCACCCGCTGTG+TGG 0.639303 1.4:+41671049 MS.gene041001:CDS
TGGCCAGAAATTCCACACAA+TGG 0.658395 1.4:+41671069 MS.gene041001:CDS
TCTGGTCCCAGGTTGCAACA+AGG 0.662336 1.4:+41667944 MS.gene041001:CDS
GTTGCCGGAATTCTCGTCGG+CGG 0.688782 1.4:-41666952 None:intergenic
GTTCACGTTCGAGTTCGACG+AGG 0.757130 1.4:+41666993 MS.gene041001:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATATATATATATATATAT+AGG - chr1.4:41667528-41667509 None:intergenic 0.0%
!! ATATATATATATATATATAT+GGG + chr1.4:41667509-41667528 MS.gene041001:intron 0.0%
!! TATATATATATATATATATA+GGG - chr1.4:41667529-41667510 None:intergenic 0.0%
!! TATATATATATATATATATA+TGG + chr1.4:41667510-41667529 MS.gene041001:intron 0.0%
!! AAGTTAGAAAATAATATAAA+TGG + chr1.4:41670041-41670060 MS.gene041001:intron 10.0%
!! ATAAAAAGTTATGAATTTAA+TGG - chr1.4:41667456-41667475 None:intergenic 10.0%
!! ATAATCATGATTATTAAATA+CGG - chr1.4:41668041-41668060 None:intergenic 10.0%
!! ATATAAATACAATCTAAATA+AGG - chr1.4:41669482-41669501 None:intergenic 10.0%
!! TATAAATACAATCTAAATAA+GGG - chr1.4:41669481-41669500 None:intergenic 10.0%
!! TTAATGTAATAATATATCAT+CGG + chr1.4:41667486-41667505 MS.gene041001:intron 10.0%
!!! AAATAATATCTGAAATTAAA+TGG - chr1.4:41670957-41670976 None:intergenic 10.0%
!!! AATAATTTTATTTTCAAGTA+AGG + chr1.4:41669095-41669114 MS.gene041001:intron 10.0%
!! AAAGAAATTATACATAAGAA+GGG + chr1.4:41668328-41668347 MS.gene041001:intron 15.0%
!! AAATAAAAAATTGAGTTTAG+TGG + chr1.4:41667315-41667334 MS.gene041001:intron 15.0%
!! AATCATGTAAATAATGAAAA+TGG + chr1.4:41669315-41669334 MS.gene041001:intron 15.0%
!! AATTAAGGAAATAATTATTG+AGG - chr1.4:41669015-41669034 None:intergenic 15.0%
!! ATCATGTAAATAATGAAAAT+GGG + chr1.4:41669316-41669335 MS.gene041001:intron 15.0%
!! CAAAATTGAAAATATTTCAT+AGG + chr1.4:41670090-41670109 MS.gene041001:intron 15.0%
!! TAAAAATTAAAATGTCAAGA+AGG - chr1.4:41670403-41670422 None:intergenic 15.0%
!!! AGTAAATAAAAGTACTTTTT+GGG - chr1.4:41668403-41668422 None:intergenic 15.0%
!!! ATATTATTTTCTAACTTTCA+AGG - chr1.4:41670038-41670057 None:intergenic 15.0%
!!! ATTTTCATTATTTACATGAT+TGG - chr1.4:41669316-41669335 None:intergenic 15.0%
!!! TAAAACAATGGATTAATTTA+TGG - chr1.4:41668564-41668583 None:intergenic 15.0%
!!! TAGTAAATAAAAGTACTTTT+TGG - chr1.4:41668404-41668423 None:intergenic 15.0%
!!! TTAAGAACTTTAAAAATTAG+TGG + chr1.4:41669753-41669772 MS.gene041001:intron 15.0%
!!! TTTTCTCTTTTATTGAAAAA+AGG + chr1.4:41670281-41670300 MS.gene041001:intron 15.0%
!!! TTTTTTTTTTCTTTCTTCTT+TGG + chr1.4:41669054-41669073 MS.gene041001:intron 15.0%
!! AAAAATATTAATTGATACGG+TGG + chr1.4:41667409-41667428 MS.gene041001:intron 20.0%
!! AAAAGTTATGAATTTAATGG+TGG - chr1.4:41667453-41667472 None:intergenic 20.0%
!! AAATTAAGAAACCTTAAACA+CGG + chr1.4:41669455-41669474 MS.gene041001:intron 20.0%
!! AATAGTTAAACTCAATTAGA+TGG - chr1.4:41670559-41670578 None:intergenic 20.0%
!! ATTTATGGGATAATGAATAT+AGG + chr1.4:41668865-41668884 MS.gene041001:intron 20.0%
!! CAAAGAAATTATACATAAGA+AGG + chr1.4:41668327-41668346 MS.gene041001:intron 20.0%
!! GGAATTTATTTATTTGTCTT+TGG + chr1.4:41670302-41670321 MS.gene041001:intron 20.0%
!! GTAGCATAAACTTTAAATTA+AGG - chr1.4:41669030-41669049 None:intergenic 20.0%
!! TAGTCTAATAAAACTAAATC+AGG - chr1.4:41670471-41670490 None:intergenic 20.0%
!! TCATGTAAATAATGAAAATG+GGG + chr1.4:41669317-41669336 MS.gene041001:intron 20.0%
!! TGAAGATTAACATCTTAAAA+AGG - chr1.4:41667986-41668005 None:intergenic 20.0%
!! TGTGTATATAACTAAAGTTT+AGG - chr1.4:41668992-41669011 None:intergenic 20.0%
!! TTATTTATTTGTCTTTGGTT+GGG + chr1.4:41670307-41670326 MS.gene041001:intron 20.0%
!! TTCACATATATCTAAAAACT+TGG - chr1.4:41668301-41668320 None:intergenic 20.0%
!! TTTATGGGATAATGAATATA+GGG + chr1.4:41668866-41668885 MS.gene041001:intron 20.0%
!! TTTATTTATTTGTCTTTGGT+TGG + chr1.4:41670306-41670325 MS.gene041001:intron 20.0%
!! TTTCAAAAGATTATATGATG+TGG + chr1.4:41667229-41667248 MS.gene041001:intron 20.0%
!!! AAAGCATGTACTTTAATTTT+TGG - chr1.4:41668158-41668177 None:intergenic 20.0%
!!! AATCCATTGTTTTATGAAAA+AGG + chr1.4:41668570-41668589 MS.gene041001:intron 20.0%
!!! AATGAATTTTTATTAGCAGA+AGG - chr1.4:41670986-41671005 None:intergenic 20.0%
!!! AGTAATATAGTGATTCTTTT+TGG + chr1.4:41668538-41668557 MS.gene041001:intron 20.0%
!!! CTAACATTTTATTCAAAAAG+TGG + chr1.4:41668457-41668476 MS.gene041001:intron 20.0%
!!! CTTTTTGAATAAAATGTTAG+AGG - chr1.4:41668457-41668476 None:intergenic 20.0%
!!! GTAAATACTTTTTTTCTTGA+GGG + chr1.4:41670704-41670723 MS.gene041001:intron 20.0%
!!! TACTTTAATTTTTGGTGAAA+AGG - chr1.4:41668150-41668169 None:intergenic 20.0%
!!! TCATCAAATTTGTTTTTACT+TGG + chr1.4:41670533-41670552 MS.gene041001:intron 20.0%
!!! TCATTTAGATTGCAAAATTT+TGG - chr1.4:41669196-41669215 None:intergenic 20.0%
!!! TGCAAATTTTTCTACAAAAA+TGG + chr1.4:41669923-41669942 MS.gene041001:intron 20.0%
!!! TGTAAATACTTTTTTTCTTG+AGG + chr1.4:41670703-41670722 MS.gene041001:intron 20.0%
!!! TTGCACTTAGAATTAATTTT+AGG + chr1.4:41667183-41667202 MS.gene041001:intron 20.0%
!!! TTTTAATTTGATTGTGTTGT+AGG + chr1.4:41667878-41667897 MS.gene041001:intron 20.0%
!!! TTTTATATAACTGACATTCT+AGG + chr1.4:41669646-41669665 MS.gene041001:intron 20.0%
!!! TTTTTTTTTGAAGTACGAAA+GGG + chr1.4:41667063-41667082 MS.gene041001:intron 20.0%
!!! TTTTTTTTTTGAAGTACGAA+AGG + chr1.4:41667062-41667081 MS.gene041001:intron 20.0%
! AAAATTCATTGTGACATTGT+AGG + chr1.4:41670996-41671015 MS.gene041001:intron 25.0%
! AAATGATGAACATGAAAATG+GGG + chr1.4:41670603-41670622 MS.gene041001:intron 25.0%
! AAATTCATTGTGACATTGTA+GGG + chr1.4:41670997-41671016 MS.gene041001:intron 25.0%
! AAATTTCCTTTACAGATATC+AGG + chr1.4:41669556-41669575 MS.gene041001:intron 25.0%
! ACATATATCTAAAAACTTGG+TGG - chr1.4:41668298-41668317 None:intergenic 25.0%
! AGAATTTATAACCACTAGTT+AGG - chr1.4:41670806-41670825 None:intergenic 25.0%
! AGACAATTTAGACTAAATCA+TGG - chr1.4:41668065-41668084 None:intergenic 25.0%
! ATAATGTCACATAGAATAAC+AGG - chr1.4:41669899-41669918 None:intergenic 25.0%
! ATCAAGCATGATTTATTAAC+AGG - chr1.4:41669161-41669180 None:intergenic 25.0%
! ATGTAAATAATGAAAATGGG+GGG + chr1.4:41669319-41669338 MS.gene041001:intron 25.0%
! ATTAGTATTTCACTTCCTTA+GGG - chr1.4:41668790-41668809 None:intergenic 25.0%
! ATTTCATAGGATCTTTCTAT+TGG + chr1.4:41670103-41670122 MS.gene041001:intron 25.0%
! CAAGGTTGAAATCAATTATT+GGG - chr1.4:41670229-41670248 None:intergenic 25.0%
! CATCTTAAAAAGGAATGAAA+AGG - chr1.4:41667976-41667995 None:intergenic 25.0%
! CATGTAAATAATGAAAATGG+GGG + chr1.4:41669318-41669337 MS.gene041001:intron 25.0%
! GAAATGATGAACATGAAAAT+GGG + chr1.4:41670602-41670621 MS.gene041001:intron 25.0%
! GGTATCTATCAATCATTTAT+GGG + chr1.4:41668851-41668870 MS.gene041001:intron 25.0%
! TAAAAAATTGAGTTTAGTGG+TGG + chr1.4:41667318-41667337 MS.gene041001:intron 25.0%
! TAATGTCACATAGAATAACA+GGG - chr1.4:41669898-41669917 None:intergenic 25.0%
! TAGAGGAATAAAATCTGTTT+AGG - chr1.4:41668440-41668459 None:intergenic 25.0%
! TCAAGGTTGAAATCAATTAT+TGG - chr1.4:41670230-41670249 None:intergenic 25.0%
! TGAAATACTAATCCATCTTT+GGG + chr1.4:41668798-41668817 MS.gene041001:intron 25.0%
! TGAAATGATGAACATGAAAA+TGG + chr1.4:41670601-41670620 MS.gene041001:intron 25.0%
! TGGTATCTATCAATCATTTA+TGG + chr1.4:41668850-41668869 MS.gene041001:intron 25.0%
! TTTGAAGGATCAGATAAATA+CGG - chr1.4:41669797-41669816 None:intergenic 25.0%
! TTTGTAGTACAGGATAATTA+AGG + chr1.4:41668616-41668635 MS.gene041001:intron 25.0%
!! AAACTTGGTGGTTTATTTAA+TGG - chr1.4:41668286-41668305 None:intergenic 25.0%
!! AAAGACACAATAGTACTTTT+AGG - chr1.4:41668088-41668107 None:intergenic 25.0%
!! AAGAAACCATAACTTTTAGA+AGG + chr1.4:41668895-41668914 MS.gene041001:intron 25.0%
!! AATGTAATAGAGTACTTAAC+AGG + chr1.4:41670731-41670750 MS.gene041001:intron 25.0%
!! ATATTGCCTTCTAAAAGTTA+TGG - chr1.4:41668904-41668923 None:intergenic 25.0%
!! TATCTGAAATTAAATGGAGA+AGG - chr1.4:41670951-41670970 None:intergenic 25.0%
!!! TAAAAGTACTATTGTGTCTT+TGG + chr1.4:41668087-41668106 MS.gene041001:intron 25.0%
!!! TGTCCTTTTTCATAAAACAA+TGG - chr1.4:41668576-41668595 None:intergenic 25.0%
!!! TTGTTACTTTTTAGTTACCA+AGG + chr1.4:41670842-41670861 MS.gene041001:intron 25.0%
!!! TTTTAATTAGAATACTCCGA+CGG - chr1.4:41667293-41667312 None:intergenic 25.0%
!!! TTTTTAGTTCGAATTTATCG+AGG + chr1.4:41670417-41670436 MS.gene041001:intron 25.0%
!!! TTTTTTTCTTTCTTCTTTGG+TGG + chr1.4:41669057-41669076 MS.gene041001:intron 25.0%
AAATGTGATTTCGATCTCAT+TGG + chr1.4:41670158-41670177 MS.gene041001:intron 30.0%
ACACCTTCATAAAAAGTAGT+TGG - chr1.4:41667643-41667662 None:intergenic 30.0%
ACAGAGAAAAATATACGTCA+TGG + chr1.4:41668593-41668612 MS.gene041001:intron 30.0%
ACCAAACAATAAACCTAACT+GGG + chr1.4:41668926-41668945 MS.gene041001:intron 30.0%
ACTATTGTGTCTTTGGATTA+TGG + chr1.4:41668094-41668113 MS.gene041001:intron 30.0%
ACTTCTAAGTTATGACTCAT+CGG + chr1.4:41671194-41671213 MS.gene041001:CDS 30.0%
AGGAATAAAATCTGTTTAGG+AGG - chr1.4:41668437-41668456 None:intergenic 30.0%
AGTTATGAATTTAATGGTGG+TGG - chr1.4:41667450-41667469 None:intergenic 30.0%
ATAAAAGACACCTTCACAAA+AGG - chr1.4:41667588-41667607 None:intergenic 30.0%
ATGAATAACTCTAACCAATG+TGG - chr1.4:41670517-41670536 None:intergenic 30.0%
ATTCTTCTAAGTTTCCACAT+TGG + chr1.4:41670500-41670519 MS.gene041001:intron 30.0%
CATAAGAAGGGAAATAGTAT+TGG + chr1.4:41668340-41668359 MS.gene041001:intron 30.0%
CTATTGTGTCTTTGGATTAT+GGG + chr1.4:41668095-41668114 MS.gene041001:intron 30.0%
CTGGTATATGGAATAGAAAA+GGG + chr1.4:41670872-41670891 MS.gene041001:intron 30.0%
CTTACAAAGTTACAAGTTAG+TGG + chr1.4:41668369-41668388 MS.gene041001:intron 30.0%
GATTAGTATTTCACTTCCTT+AGG - chr1.4:41668791-41668810 None:intergenic 30.0%
GTGAAATACTAATCCATCTT+TGG + chr1.4:41668797-41668816 MS.gene041001:intron 30.0%
GTTATGAATTTAATGGTGGT+GGG - chr1.4:41667449-41667468 None:intergenic 30.0%
GTTTGTCAATTGTCAATATC+AGG + chr1.4:41669288-41669307 MS.gene041001:intron 30.0%
TACCAAACAATAAACCTAAC+TGG + chr1.4:41668925-41668944 MS.gene041001:intron 30.0%
TATTGTGTCTTTGGATTATG+GGG + chr1.4:41668096-41668115 MS.gene041001:intron 30.0%
TGTAAATAATGAAAATGGGG+GGG + chr1.4:41669320-41669339 MS.gene041001:intron 30.0%
TGTTGTTGAATCTTCAAAAC+TGG + chr1.4:41669231-41669250 MS.gene041001:intron 30.0%
TTAGTATTTCACTTCCTTAG+GGG - chr1.4:41668789-41668808 None:intergenic 30.0%
TTGAAGGATCAGATAAATAC+GGG - chr1.4:41669796-41669815 None:intergenic 30.0%
! AACTTAGAAGTGAGTTTTCT+GGG - chr1.4:41671185-41671204 None:intergenic 30.0%
! ATGATGTGGCAGATTTTTAT+TGG + chr1.4:41667243-41667262 MS.gene041001:intron 30.0%
! CTAACTTGTAACTTTGTAAG+AGG - chr1.4:41668369-41668388 None:intergenic 30.0%
! GCAGATTTTATCAATGAAAC+TGG + chr1.4:41670193-41670212 MS.gene041001:intron 30.0%
! GTGTTGATACATGTATTCAT+GGG + chr1.4:41668762-41668781 MS.gene041001:intron 30.0%
! TAACTTAGAAGTGAGTTTTC+TGG - chr1.4:41671186-41671205 None:intergenic 30.0%
! TGTGTTGATACATGTATTCA+TGG + chr1.4:41668761-41668780 MS.gene041001:intron 30.0%
!! AATAGCTTTGAATCAAATCG+TGG - chr1.4:41669418-41669437 None:intergenic 30.0%
!! CTTGGCTCTAAAAATATTTG+AGG + chr1.4:41670360-41670379 MS.gene041001:intron 30.0%
!! TCAGATTATTTTACCCGTAT+TGG - chr1.4:41669369-41669388 None:intergenic 30.0%
!!! ACACCAACTACTTTTTATGA+AGG + chr1.4:41667637-41667656 MS.gene041001:intron 30.0%
AAAATTGAGTTTAGTGGTGG+TGG + chr1.4:41667321-41667340 MS.gene041001:intron 35.0%
AAAGTGAAAATCACACCTTG+AGG + chr1.4:41667686-41667705 MS.gene041001:intron 35.0%
AAATTAGGCAATGTGACGAT+AGG - chr1.4:41669957-41669976 None:intergenic 35.0%
AATCTGTTTAGGAGGATTGT+AGG - chr1.4:41668429-41668448 None:intergenic 35.0%
AATGAAACTGTTGCAAGATC+TGG + chr1.4:41667926-41667945 MS.gene041001:CDS 35.0%
ACCCAGTTAGGTTTATTGTT+TGG - chr1.4:41668930-41668949 None:intergenic 35.0%
AGTTCTTAAGCACTATCTAC+AGG - chr1.4:41669742-41669761 None:intergenic 35.0%
ATGGGATAATGAATATAGGG+TGG + chr1.4:41668869-41668888 MS.gene041001:intron 35.0%
ATTTGATTGTGTTGTAGGCT+AGG + chr1.4:41667883-41667902 MS.gene041001:intron 35.0%
CACCTTCATAAAAAGTAGTG+TGG - chr1.4:41667731-41667750 None:intergenic 35.0%
GATTCAACAACAAATGATGC+TGG - chr1.4:41669223-41669242 None:intergenic 35.0%
GCTGGTATATGGAATAGAAA+AGG + chr1.4:41670871-41670890 MS.gene041001:intron 35.0%
GTAAATAATGAAAATGGGGG+GGG + chr1.4:41669321-41669340 MS.gene041001:intron 35.0%
GTGGTCGAACATACTTATAA+TGG - chr1.4:41669399-41669418 None:intergenic 35.0%
GTTACCATCAACACTTTGTT+TGG + chr1.4:41668830-41668849 MS.gene041001:intron 35.0%
TAAGTCAGAAAGCCAAAGAA+AGG - chr1.4:41668657-41668676 None:intergenic 35.0%
TATCGTCACATTGCCTAATT+TGG + chr1.4:41669956-41669975 MS.gene041001:intron 35.0%
TGAAAGGGAATTATTCTAGC+TGG + chr1.4:41668715-41668734 MS.gene041001:intron 35.0%
TGAAGGATCAGATAAATACG+GGG - chr1.4:41669795-41669814 None:intergenic 35.0%
TGGGATAATGAATATAGGGT+GGG + chr1.4:41668870-41668889 MS.gene041001:intron 35.0%
TTAAATGGAGAAGGCTGAAT+TGG - chr1.4:41670942-41670961 None:intergenic 35.0%
TTCTAGACTTCTGCATTGTT+TGG + chr1.4:41670002-41670021 MS.gene041001:intron 35.0%
TTTCAACCTTGACAGCATAT+TGG + chr1.4:41670238-41670257 MS.gene041001:CDS 35.0%
TTTCCATTGTGTGGAATTTC+TGG - chr1.4:41671075-41671094 None:intergenic 35.0%
TTTCTATTGGAACACATTGC+AGG + chr1.4:41670116-41670135 MS.gene041001:intron 35.0%
! ACTTAGAAGTGAGTTTTCTG+GGG - chr1.4:41671184-41671203 None:intergenic 35.0%
! ATACTAATCCATCTTTGGGA+AGG + chr1.4:41668802-41668821 MS.gene041001:intron 35.0%
! ATAGAAGACACCTTTTGTGA+AGG + chr1.4:41667575-41667594 MS.gene041001:intron 35.0%
! ATGTTCCTAAGCACTTTTGA+AGG - chr1.4:41669812-41669831 None:intergenic 35.0%
! CTGAACTACATGTACTTTTC+TGG + chr1.4:41670337-41670356 MS.gene041001:intron 35.0%
! GTGAAAAGGTGATAATGACA+TGG - chr1.4:41668136-41668155 None:intergenic 35.0%
! TTTTATCAAGTCACACCTCA+AGG - chr1.4:41667704-41667723 None:intergenic 35.0%
!! GATACCAAACAAAGTGTTGA+TGG - chr1.4:41668837-41668856 None:intergenic 35.0%
!! TAAGGCTTTTGAGTGTTTGT+GGG + chr1.4:41669113-41669132 MS.gene041001:intron 35.0%
!! TCTTTGGCTTTCTGACTTAT+TGG + chr1.4:41668658-41668677 MS.gene041001:intron 35.0%
!! TTTCTGGGGTCATGAAATTA+GGG - chr1.4:41671170-41671189 None:intergenic 35.0%
!!! ACTTTTTAGTTACCAAGGTC+TGG + chr1.4:41670847-41670866 MS.gene041001:intron 35.0%
!!! CACCACACTACTTTTTATGA+AGG + chr1.4:41667726-41667745 MS.gene041001:intron 35.0%
!!! CTTTTTAGTTACCAAGGTCT+GGG + chr1.4:41670848-41670867 MS.gene041001:intron 35.0%
!!! TTTTCTGGGGTCATGAAATT+AGG - chr1.4:41671171-41671190 None:intergenic 35.0%
!!! TTTTTAGTTACCAAGGTCTG+GGG + chr1.4:41670849-41670868 MS.gene041001:intron 35.0%
AAAAATGCCCATGTTGCAGT+GGG - chr1.4:41668207-41668226 None:intergenic 40.0%
AACAGGTGAAGTTGTATGTG+TGG - chr1.4:41669144-41669163 None:intergenic 40.0%
AAGCCAAAGAAAGGAACAAG+AGG - chr1.4:41668648-41668667 None:intergenic 40.0%
ACAGATATCAGGAACAGCAT+TGG + chr1.4:41669567-41669586 MS.gene041001:intron 40.0%
AGCCAAAGAAAGGAACAAGA+GGG - chr1.4:41668647-41668666 None:intergenic 40.0%
ATAGCCATAGCTTAGCAGAA+AGG + chr1.4:41667027-41667046 MS.gene041001:CDS 40.0%
ATCTCTACAGAATGAAGTGG+AGG + chr1.4:41669618-41669637 MS.gene041001:CDS 40.0%
ATTGTAGGGAATGTCTCTCA+TGG + chr1.4:41671011-41671030 MS.gene041001:intron 40.0%
CAGATAAATACGGGGAAGAA+AGG - chr1.4:41669787-41669806 None:intergenic 40.0%
CATTCTGTAGAGATTGCACA+TGG - chr1.4:41669612-41669631 None:intergenic 40.0%
CTAAATAAGGGCCGTGTTTA+AGG - chr1.4:41669469-41669488 None:intergenic 40.0%
CTACAGAGTGGAATGAATGA+CGG - chr1.4:41670655-41670674 None:intergenic 40.0%
GAAGCATGAAATTTCAAGCC+TGG - chr1.4:41669985-41670004 None:intergenic 40.0%
GCAATCTCTACAGAATGAAG+TGG + chr1.4:41669615-41669634 MS.gene041001:CDS 40.0%
GCTGTTCCTGATATCTGTAA+AGG - chr1.4:41669565-41669584 None:intergenic 40.0%
GCTTAGATCATCCTAACTAG+TGG + chr1.4:41670792-41670811 MS.gene041001:intron 40.0%
TAGCCATAGCTTAGCAGAAA+GGG + chr1.4:41667028-41667047 MS.gene041001:CDS 40.0%
TCATACGCACAACTGTAGAT+AGG - chr1.4:41670443-41670462 None:intergenic 40.0%
TGAAATGCTGAAACCCAGTT+AGG - chr1.4:41668942-41668961 None:intergenic 40.0%
TTACCCTTTCTGCTAAGCTA+TGG - chr1.4:41667034-41667053 None:intergenic 40.0%
! GAATTATTCTAGCTGGACTC+TGG + chr1.4:41668722-41668741 MS.gene041001:intron 40.0%
! GTAAAGTGTCTTTACACCGT+CGG + chr1.4:41667274-41667293 MS.gene041001:intron 40.0%
! TACGTCATGGTTTGTAGTAC+AGG + chr1.4:41668606-41668625 MS.gene041001:intron 40.0%
! TTTCTTCTTTGGTGGTCTCA+GGG + chr1.4:41669065-41669084 MS.gene041001:intron 40.0%
!! AAGGCTTTTGAGTGTTTGTG+GGG + chr1.4:41669114-41669133 MS.gene041001:intron 40.0%
!! ATTTAATGGTGGTGGGTTGA+CGG - chr1.4:41667442-41667461 None:intergenic 40.0%
!! CTGATCCTTCAAAAGTGCTT+AGG + chr1.4:41669804-41669823 MS.gene041001:intron 40.0%
!! GTAAGGCTTTTGAGTGTTTG+TGG + chr1.4:41669112-41669131 MS.gene041001:intron 40.0%
!! TGGACTCTGGCTTTAACAAT+TGG + chr1.4:41668735-41668754 MS.gene041001:intron 40.0%
!!! ATCAGGAACAGCATTGGTTT+TGG + chr1.4:41669573-41669592 MS.gene041001:CDS 40.0%
!!! CTACATGTACTTTTCTGGCT+TGG + chr1.4:41670342-41670361 MS.gene041001:intron 40.0%
AACACTGTGTGTGTGATGTG+AGG - chr1.4:41668241-41668260 None:intergenic 45.0%
AACCATCACCTTCCCAAAGA+TGG - chr1.4:41668813-41668832 None:intergenic 45.0%
AATAATGAAAATGGGGGGGG+TGG + chr1.4:41669324-41669343 MS.gene041001:intron 45.0%
ACCAAACCTTGTTGCAACCT+GGG - chr1.4:41667953-41667972 None:intergenic 45.0%
ATAATGAAAATGGGGGGGGT+GGG + chr1.4:41669325-41669344 MS.gene041001:intron 45.0%
ATGCATTCCACCAACCACTT+TGG + chr1.4:41671127-41671146 MS.gene041001:CDS 45.0%
ATGTATTCATGGGTCCCCTA+AGG + chr1.4:41668772-41668791 MS.gene041001:intron 45.0%
CAAAAATGCCCATGTTGCAG+TGG - chr1.4:41668208-41668227 None:intergenic 45.0%
CATTGCCTAATTTGGACTCC+AGG + chr1.4:41669964-41669983 MS.gene041001:intron 45.0%
CGTCATTCATTCCACTCTGT+AGG + chr1.4:41670653-41670672 MS.gene041001:intron 45.0%
GACAGCAATTTCAGCAATCG+TGG + chr1.4:41671097-41671116 MS.gene041001:CDS 45.0%
GACTTATTGGAGAGACAGAG+AGG + chr1.4:41668671-41668690 MS.gene041001:intron 45.0%
GCCAAAGAAAGGAACAAGAG+GGG - chr1.4:41668646-41668665 None:intergenic 45.0%
TATCATGACAGCCTACAGAG+TGG - chr1.4:41670667-41670686 None:intergenic 45.0%
TATTGGAGAGACAGAGAGGT+GGG + chr1.4:41668675-41668694 MS.gene041001:intron 45.0%
TCAAGCCTGGAGTCCAAATT+AGG - chr1.4:41669972-41669991 None:intergenic 45.0%
TCCCCTCTTGTTCCTTTCTT+TGG + chr1.4:41668642-41668661 MS.gene041001:intron 45.0%
TGCATTCCACCAACCACTTT+GGG + chr1.4:41671128-41671147 MS.gene041001:CDS 45.0%
TGCTGTCTGTTTCCATTGTG+TGG - chr1.4:41671084-41671103 None:intergenic 45.0%
TGGCCAGAAATTCCACACAA+TGG + chr1.4:41671069-41671088 MS.gene041001:CDS 45.0%
TTATTGGAGAGACAGAGAGG+TGG + chr1.4:41668674-41668693 MS.gene041001:intron 45.0%
! ATCCATCTTTGGGAAGGTGA+TGG + chr1.4:41668808-41668827 MS.gene041001:intron 45.0%
! CTTTCTTCTTTGGTGGTCTC+AGG + chr1.4:41669064-41669083 MS.gene041001:intron 45.0%
! TTTTCTTCTCTCCCCCAAAG+TGG - chr1.4:41671144-41671163 None:intergenic 45.0%
!! CTGTAGAGCACTTTTCTTGG+TGG - chr1.4:41668182-41668201 None:intergenic 45.0%
!! GTGCTGTAGAGCACTTTTCT+TGG - chr1.4:41668185-41668204 None:intergenic 45.0%
!! GTTTAGTGGTGGTGGATTGA+CGG + chr1.4:41667329-41667348 MS.gene041001:intron 45.0%
!! ATTAAAAATATTAATTGATA+CGG + chr1.4:41667406-41667425 MS.gene041001:intron 5.0%
AATGGGGAGAGAGAGAGAGA+TGG + chr1.4:41670619-41670638 MS.gene041001:intron 50.0%
CATTCCACCAACCACTTTGG+GGG + chr1.4:41671130-41671149 MS.gene041001:CDS 50.0%
CGAACTCGAACGTGAACGTA+CGG - chr1.4:41666990-41667009 None:intergenic 50.0%
CTGCAGCCAATATGCTGTCA+AGG - chr1.4:41670247-41670266 None:intergenic 50.0%
GACCAAACCTTGTTGCAACC+TGG - chr1.4:41667954-41667973 None:intergenic 50.0%
GCATTCCACCAACCACTTTG+GGG + chr1.4:41671129-41671148 MS.gene041001:CDS 50.0%
TAATGAAAATGGGGGGGGTG+GGG + chr1.4:41669326-41669345 MS.gene041001:intron 50.0%
TACAGCACCCACTGCAACAT+GGG + chr1.4:41668197-41668216 MS.gene041001:intron 50.0%
TCCCAGGTTGCAACAAGGTT+TGG + chr1.4:41667949-41667968 MS.gene041001:intron 50.0%
!! TGGAATTTCTGGCCACACAG+CGG - chr1.4:41671064-41671083 None:intergenic 50.0%
AATGAAAATGGGGGGGGTGG+GGG + chr1.4:41669327-41669346 MS.gene041001:intron 55.0%
ACAGCGGGTGAAACTGCGTT+AGG - chr1.4:41671048-41671067 None:intergenic 55.0%
AGAGACAGAGAGGTGGGTGT+GGG + chr1.4:41668681-41668700 MS.gene041001:intron 55.0%
CAGCGGGTGAAACTGCGTTA+GGG - chr1.4:41671047-41671066 None:intergenic 55.0%
CATATACCAGCCCCAGACCT+TGG - chr1.4:41670862-41670881 None:intergenic 55.0%
CTACAGCACCCACTGCAACA+TGG + chr1.4:41668196-41668215 MS.gene041001:intron 55.0%
CTGTTGCAAGATCTGGTCCC+AGG + chr1.4:41667933-41667952 MS.gene041001:CDS 55.0%
CTTCTCTCCCCCAAAGTGGT+TGG - chr1.4:41671140-41671159 None:intergenic 55.0%
TCTGGTCCCAGGTTGCAACA+AGG + chr1.4:41667944-41667963 MS.gene041001:CDS 55.0%
! CAAGGTCTGGGGCTGGTATA+TGG + chr1.4:41670860-41670879 MS.gene041001:intron 55.0%
! GTTCACGTTCGAGTTCGACG+AGG + chr1.4:41666993-41667012 MS.gene041001:CDS 55.0%
! TAGTTACCAAGGTCTGGGGC+TGG + chr1.4:41670853-41670872 MS.gene041001:intron 55.0%
!! GGAATTTCTGGCCACACAGC+GGG - chr1.4:41671063-41671082 None:intergenic 55.0%
ACGCAGTTTCACCCGCTGTG+TGG + chr1.4:41671049-41671068 MS.gene041001:CDS 60.0%
ATCGCCGCCGACGAGAATTC+CGG + chr1.4:41666948-41666967 MS.gene041001:CDS 60.0%
ATGAAAATGGGGGGGGTGGG+GGG + chr1.4:41669328-41669347 MS.gene041001:intron 60.0%
CTCTCCCCCAAAGTGGTTGG+TGG - chr1.4:41671137-41671156 None:intergenic 60.0%
GAGAGACAGAGAGGTGGGTG+TGG + chr1.4:41668680-41668699 MS.gene041001:intron 60.0%
GCCGACGAGAATTCCGGCAA+CGG + chr1.4:41666954-41666973 MS.gene041001:CDS 60.0%
GCCGTTGCCGGAATTCTCGT+CGG - chr1.4:41666958-41666977 None:intergenic 60.0%
GTTGCCGGAATTCTCGTCGG+CGG - chr1.4:41666955-41666974 None:intergenic 60.0%
TGGGCGTGTGGGGTGTGAAA+GGG + chr1.4:41668700-41668719 MS.gene041001:intron 60.0%
!! GGGGGGGGGTGTTACCAATA+CGG + chr1.4:41669352-41669371 MS.gene041001:intron 60.0%
!! GGGGGGGGTGTTACCAATAC+GGG + chr1.4:41669353-41669372 MS.gene041001:intron 60.0%
AGAGGTGGGTGTGGGCGTGT+GGG + chr1.4:41668689-41668708 MS.gene041001:intron 65.0%
CGAGAATTCCGGCAACGGCG+AGG + chr1.4:41666959-41666978 MS.gene041001:CDS 65.0%
GTGGGCGTGTGGGGTGTGAA+AGG + chr1.4:41668699-41668718 MS.gene041001:intron 65.0%
TGAAAATGGGGGGGGTGGGG+GGG + chr1.4:41669329-41669348 MS.gene041001:intron 65.0%
AAAATGGGGGGGGTGGGGGG+GGG + chr1.4:41669331-41669350 MS.gene041001:intron 70.0%
CGGAAGCTCCTCGCCGTTGC+CGG - chr1.4:41666970-41666989 None:intergenic 70.0%
GAAAATGGGGGGGGTGGGGG+GGG + chr1.4:41669330-41669349 MS.gene041001:intron 70.0%
GAGAGGTGGGTGTGGGCGTG+TGG + chr1.4:41668688-41668707 MS.gene041001:intron 70.0%
GAGGTGGGTGTGGGCGTGTG+GGG + chr1.4:41668690-41668709 MS.gene041001:intron 70.0%
AAATGGGGGGGGTGGGGGGG+GGG + chr1.4:41669332-41669351 MS.gene041001:intron 75.0%
! AATGGGGGGGGTGGGGGGGG+GGG + chr1.4:41669333-41669352 MS.gene041001:intron 80.0%
! ATGGGGGGGGTGGGGGGGGG+GGG + chr1.4:41669334-41669353 MS.gene041001:intron 85.0%
! TGGGGGGGGTGGGGGGGGGG+GGG + chr1.4:41669335-41669354 MS.gene041001:intron 90.0%
! GGGGGGGGTGGGGGGGGGGG+GGG + chr1.4:41669336-41669355 MS.gene041001:intron 95.0%
! GGGGGGGTGGGGGGGGGGGG+GGG + chr1.4:41669337-41669356 MS.gene041001:intron 95.0%
! GGGGGGTGGGGGGGGGGGGG+GGG + chr1.4:41669338-41669357 MS.gene041001:intron 95.0%


Chromosome Type Strat End Strand Name
chr1.4 gene 41666918 41671225 41666918 ID=MS.gene041001
chr1.4 mRNA 41666918 41671225 41666918 ID=MS.gene041001.t1;Parent=MS.gene041001
chr1.4 exon 41666918 41667049 41666918 ID=MS.gene041001.t1.exon1;Parent=MS.gene041001.t1
chr1.4 CDS 41666918 41667049 41666918 ID=cds.MS.gene041001.t1;Parent=MS.gene041001.t1
chr1.4 exon 41667900 41667965 41667900 ID=MS.gene041001.t1.exon2;Parent=MS.gene041001.t1
chr1.4 CDS 41667900 41667965 41667900 ID=cds.MS.gene041001.t1;Parent=MS.gene041001.t1
chr1.4 exon 41669571 41669639 41669571 ID=MS.gene041001.t1.exon3;Parent=MS.gene041001.t1
chr1.4 CDS 41669571 41669639 41669571 ID=cds.MS.gene041001.t1;Parent=MS.gene041001.t1
chr1.4 exon 41670197 41670268 41670197 ID=MS.gene041001.t1.exon4;Parent=MS.gene041001.t1
chr1.4 CDS 41670197 41670268 41670197 ID=cds.MS.gene041001.t1;Parent=MS.gene041001.t1
chr1.4 exon 41671018 41671225 41671018 ID=MS.gene041001.t1.exon5;Parent=MS.gene041001.t1
chr1.4 CDS 41671018 41671225 41671018 ID=cds.MS.gene041001.t1;Parent=MS.gene041001.t1
Gene Sequence

>MS.gene041001

GTGAAATTGTCGTCTAAGAAGAGTAAGAGTATCGCCGCCGACGAGAATTCCGGCAACGGCGAGGAGCTTCCGTACGTTCACGTTCGAGTTCGACGAGGTCAAGCTACTGATAGCCATAGCTTAGCAGAAAGGGTAAACTCTTTTTTTTTTTTTTGAAGTACGAAAGGGTAAACTCTTTAATTAATCACTAATTCACTTCTTTAATCACATTTATTTATCATAAAGTTTTCTTCATTTTTTATAAGTATACATGCAGATGAAAGTTTTGCACTTAGAATTAATTTTAGGTTTATTTTTTATTCAATTAACATTTTCAAAAGATTATATGATGTGGCAGATTTTTATTGGATGACTGTGTAAAGTGTCTTTACACCGTCGGAGTATTCTAATTAAAATAAAATAAAAAATTGAGTTTAGTGGTGGTGGATTGACGGTTTAAAACAACTTTACACGCAAAATCAATCAAAACATTTCAAATTGCTAAATAAATTAAAAATATTAATTGATACGGTGGTTCTAGACCGTCAACCCACCACCATTAAATTCATAACTTTTTATAAATTGTTTGTTAATGTAATAATATATCATCGGATATATATATATATATATATATATATATATATATATATATATATATATATATATATATGGGTTATGATAGAAGACACCTTTTGTGAAGGTGTCTTTTATCAAGTTACTCTATGAGCATTTGTTAAAAGACACCAACTACTTTTTATGAAGGTGTCTTTTATCAAAGTTATAACTAAAAAAGTGAAAATCACACCTTGAGGTGTGACTTGATAAAAGACACCACACTACTTTTTATGAAGGTGTCTTGTAACATAACCCTATATATATATATATATATATATATATATGGATGTGTAAAACTTTTGCACATGAGTGTATATAAATTACACTAACTCATTTTTTAATTAAAAAATTAGTAATATTTTTTCATTTTAATTTGATTGTGTTGTAGGCTAGGAGAGAGAAGATAAATGCTCGAATGAAACTGTTGCAAGATCTGGTCCCAGGTTGCAACAAGGTTTGGTCCTTTTCATTCCTTTTTAAGATGTTAATCTTCATTTACTATAATTAATTAATTGTGTACTTTACTCCGTATTTAATAATCATGATTATGCCATGATTTAGTCTAAATTGTCTCCTAAAAGTACTATTGTGTCTTTGGATTATGGGGTTTAAGTGATTATGCCATGTCATTATCACCTTTTCACCAAAAATTAAAGTACATGCTTTTCCACCAAGAAAAGTGCTCTACAGCACCCACTGCAACATGGGCATTTTTGTAATTTTCTGCCTCACATCACACACACAGTGTTTTTACACACTTTAGTGTTTAAACCATTAAATAAACCACCAAGTTTTTAGATATATGTGAAAATTATCAAAGAAATTATACATAAGAAGGGAAATAGTATTGGTTACCTCTTACAAAGTTACAAGTTAGTGGCTAATACACCCAAAAAGTACTTTTATTTACTAATCCTACAATCCTCCTAAACAGATTTTATTCCTCTAACATTTTATTCAAAAAGTGGAAGATGCTCAAAACATTTACAAAAATTGATATCAAGATAAAAACGTTACATAAAAGTAAGTAATATAGTGATTCTTTTTGGCCATAAATTAATCCATTGTTTTATGAAAAAGGACAGAGAAAAATATACGTCATGGTTTGTAGTACAGGATAATTAAGGTAATCCCCTCTTGTTCCTTTCTTTGGCTTTCTGACTTATTGGAGAGACAGAGAGGTGGGTGTGGGCGTGTGGGGTGTGAAAGGGAATTATTCTAGCTGGACTCTGGCTTTAACAATTGGAAGTGTGTTGATACATGTATTCATGGGTCCCCTAAGGAAGTGAAATACTAATCCATCTTTGGGAAGGTGATGGTTACCATCAACACTTTGTTTGGTATCTATCAATCATTTATGGGATAATGAATATAGGGTGGGAAAAGAAACCATAACTTTTAGAAGGCAATATCTACCAAACAATAAACCTAACTGGGTTTCAGCATTTCAACATTTTACATATTTTAATTAATTTTGCCTAAACTTTAGTTATATACACACCTCAATAATTATTTCCTTAATTTAAAGTTTATGCTACATTGTTTTTTTTTTCTTTCTTCTTTGGTGGTCTCAGGGTTATTACAATAATTTTATTTTCAAGTAAGGCTTTTGAGTGTTTGTGGGGCTCTCCACACATACAACTTCACCTGTTAATAAATCATGCTTGATTTGATTACTCTACCAAAATTTTGCAATCTAAATGACTTTCCAGCATCATTTGTTGTTGAATCTTCAAAACTGGAATTTGAGTTTTGTTTTAGCTTTTGATAAATATAGTTTGTCAATTGTCAATATCAGGATCCAATCATGTAAATAATGAAAATGGGGGGGGTGGGGGGGGGGGGGGGGTGTTACCAATACGGGTAAAATAATCTGATTGAAAGCCATTATAAGTATGTTCGACCACGATTTGATTCAAAGCTATTATAGACTTTTCTATGTTAAATTAAGAAACCTTAAACACGGCCCTTATTTAGATTGTATTTATATATATTTTTCTAACAAAAGAGCTAATCTAGTAAGTCAAAGATAGATGACATGATAAAATTTCCTTTACAGATATCAGGAACAGCATTGGTTTTGGATAAAATCATCAACCATGTGCAATCTCTACAGAATGAAGTGGAGGTCAGATTTTATATAACTGACATTCTAGGCAATTGTTTAGACAAAAGAATATAAGCATGAAGTTGTTTGCAGCAATCTGATTTCTGTTTATATCATCAACCTGTAGATAGTGCTTAAGAACTTTAAAAATTAGTGGCTGCTGTTCCTTTCTTCCCCGTATTTATCTGATCCTTCAAAAGTGCTTAGGAACATTTTTGCACTCATGTAAACAAATAAAACAGTTCTTACTTATAAGCATTAAAGCAGTTAGCTTTGCCCTGTTATTCTATGTGACATTATAAACTGCAAATTTTTCTACAAAAATGGCTTTGACTCCTATCGTCACATTGCCTAATTTGGACTCCAGGCTTGAAATTTCATGCTTCTAGACTTCTGCATTGTTTGGTTGTTCGTATCCTTGAAAGTTAGAAAATAATATAAATGGTATTTGCACTGTGAAGATATCTAAAACAAAATTGAAAATATTTCATAGGATCTTTCTATTGGAACACATTGCAGGAACATTTGAGTTACTTCTTAAATGTGATTTCGATCTCATTGGTTTCTCTGTTTTGCAGATTTTATCAATGAAACTGGCAGCAGTTAACCCAATAATTGATTTCAACCTTGACAGCATATTGGCTGCAGAAGTAAGTATTATTTTTTCTCTTTTATTGAAAAAAGGAATTTATTTATTTGTCTTTGGTTGGGCAGTAATCTGAACTACATGTACTTTTCTGGCTTGGCTCTAAAAATATTTGAGGAACAATACATGTCATCACCTTCTTGACATTTTAATTTTTAGTTCGAATTTATCGAGGCCTATCTACAGTTGTGCGTATGAGTAGTCCTGATTTAGTTTTATTAGACTACTTTCTGAAATTCTTCTAAGTTTCCACATTGGTTAGAGTTATTCATCAAATTTGTTTTTACTTGGCCATCTAATTGAGTTTAACTATTGTATACGTTCATGCTCTAACACTGAAATGATGAACATGAAAATGGGGAGAGAGAGAGAGATGGCTTATAGTCACCGTCATTCATTCCACTCTGTAGGCTGTCATGATAGACAAACTAAGAACAATGTAAATACTTTTTTTCTTGAGGGAAACAATGTAATAGAGTACTTAACAGGAATCAACAATATGAAAACATAAATGCTTGCACTTGATTGCTTAGATCATCCTAACTAGTGGTTATAAATTCTTGTGTAATCTTCATCTTTGTTACTTTTTAGTTACCAAGGTCTGGGGCTGGTATATGGAATAGAAAAGGGTGTTTTGATGCGATGTGTATGATTTTGTGGATGAACAAATAAAGCCAATTCAGCCTTCTCCATTTAATTTCAGATATTATTTTAATTTCCTTCTGCTAATAAAAATTCATTGTGACATTGTAGGGAATGTCTCTCATGGACAGTAACTTCCCTAACGCAGTTTCACCCGCTGTGTGGCCAGAAATTCCACACAATGGAAACAGACAGCAATTTCAGCAATCGTGGCAATCTGATGCATTCCACCAACCACTTTGGGGGAGAGAAGAAAACAACCCTAATTTCATGACCCCAGAAAACTCACTTCTAAGTTATGACTCATCGGCAAATTCAG
Protein sequence

>MS.gene041001.t1

VKLSSKKSKSIAADENSGNGEELPYVHVRVRRGQATDSHSLAERARREKINARMKLLQDLVPGCNKISGTALVLDKIINHVQSLQNEVEILSMKLAAVNPIIDFNLDSILAAEGMSLMDSNFPNAVSPAVWPEIPHNGNRQQFQQSWQSDAFHQPLWGREENNPNFMTPENSLLSYDSSANS