AlfalfaGEDB | MS.gene041023

M. sativa cultivar XinJiangDaYe / MS.gene041023

KEGG: -
GO: GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0097159 GO:1901363
PFAM: PF02362.24

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene041023.t1	KEH40804.1	87.8	74	9	0	3	76	320	393	6.90E-30	139.4

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene041023.t1	A0A072VFJ7	87.8	74	9	0	3	76	320	393	5.0e-30	139.4

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene041023.t1	TF	B3

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene041023.t1	MTR_1g035490	82.895	76	13	0	2	77	253	328	1.10e-39	133
MS.gene041023.t1	MTR_1g035570	85.526	76	11	0	2	77	319	394	2.03e-39	134
MS.gene041023.t1	MTR_1g035620	59.375	64	24	1	13	76	347	408	7.70e-18	75.9
MS.gene041023.t1	MTR_1g035520	44.156	77	41	1	3	77	307	383	5.86e-16	70.9
MS.gene041023.t1	MTR_6g061070	50.820	61	30	0	17	77	410	470	1.04e-14	67.4

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Find 16 sgRNAs with CRISPR-Local

Find 17 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATATTGTGGAGTTGAAAA+TGG	0.256652	1.2:-19753797	MS.gene041023:CDS
AACTATTACGAGAGTATTCG+TGG	0.500607	1.2:-19753748	MS.gene041023:CDS
AATATTGTGGAGTTGAAAAT+GGG	0.451536	1.2:-19753796	MS.gene041023:CDS
ACGAGAGTATTCGTGGCTGT+AGG	0.618825	1.2:-19753741	MS.gene041023:CDS
AGTATTCGTGGCTGTAGGTT+CGG	0.502330	1.2:-19753736	MS.gene041023:CDS
ATATTGTGGAGTTGAAAATG+GGG	0.692849	1.2:-19753795	MS.gene041023:CDS
ATTTATGGAAGAATGCAAAG+TGG	0.635124	1.2:-19753698	MS.gene041023:CDS
CCAAAGGAGTTTATGAAAAT+GGG	0.408096	1.2:-19753829	MS.gene041023:CDS
CGTGGCTGTAGGTTCGGTAG+AGG	0.492240	1.2:-19753730	MS.gene041023:CDS
GAAGAATGCAAAGTGGAGAT+TGG	0.433387	1.2:-19753691	MS.gene041023:CDS

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
	ATATTGTGGAGTTGAAAATG+GGG	-	chr1.2:19753738-19753757	MS.gene041023:CDS	30.0%
	ATTTATGGAAGAATGCAAAG+TGG	-	chr1.2:19753835-19753854	MS.gene041023:CDS	30.0%
	CCAAAGGAGTTTATGAAAAT+GGG	-	chr1.2:19753704-19753723	MS.gene041023:CDS	30.0%
	GGGATATCATGAAAATATTG+TGG	-	chr1.2:19753724-19753743	MS.gene041023:CDS	30.0%
	GCCAAAGGAGTTTATGAAAA+TGG	-	chr1.2:19753703-19753722	MS.gene041023:CDS	35.0%
	GAAGAATGCAAAGTGGAGAT+TGG	-	chr1.2:19753842-19753861	MS.gene041023:intron	40.0%
	TGAAAATGGGGAGAAAGTCA+TGG	-	chr1.2:19753750-19753769	MS.gene041023:CDS	40.0%
	AGTATTCGTGGCTGTAGGTT+CGG	-	chr1.2:19753797-19753816	MS.gene041023:CDS	45.0%
	GTATCTGCAGTGTGTGCCAA+AGG	-	chr1.2:19753688-19753707	MS.gene041023:CDS	50.0%
!	AAATATTGTGGAGTTGAAAA+TGG	-	chr1.2:19753736-19753755	MS.gene041023:CDS	25.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1.2	gene	19753627	19753928	19753627	ID=MS.gene041023
chr1.2	mRNA	19753627	19753928	19753627	ID=MS.gene041023.t1;Parent=MS.gene041023
chr1.2	exon	19753926	19753928	19753926	ID=MS.gene041023.t1.exon1;Parent=MS.gene041023.t1
chr1.2	CDS	19753926	19753928	19753926	ID=cds.MS.gene041023.t1;Parent=MS.gene041023.t1
chr1.2	exon	19753627	19753857	19753627	ID=MS.gene041023.t1.exon2;Parent=MS.gene041023.t1
chr1.2	CDS	19753627	19753857	19753627	ID=cds.MS.gene041023.t1;Parent=MS.gene041023.t1

Gene Sequence	>MS.gene041023 ATGGTTAGATTTATAGATACATATGTTAGAACTACATGATGAATAAATAATATTTTTGTTTGTATCTGCAGTGTGTGCCAAAGGAGTTTATGAAAATGGGATATCATGAAAATATTGTGGAGTTGAAAATGGGGAGAAAGTCATGGCTCGTAAAAGTCAACTATTACGAGAGTATTCGTGGCTGTAGGTTCGGTAGAGGTTGGATAAAATTTATGGAAGAATGCAAAGTGGAGATTGGAGATACTTGTCTCTTCAAGTTAATTGATGAGAGAAAATTTGTGTTTGATGTTTCAATTGTTTGA
Protein sequence	>MS.gene041023.t1 MCVPKEFMKMGYHENIVELKMGRKSWLVKVNYYESIRGCRFGRGWIKFMEECKVEIGDTCLFKLIDERKFVFDVSIV