AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene041029

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene041029.t1 MTR_1g035420 97.583 662 11 4 1 660 1 659 0.0 1326
MS.gene041029.t1 MTR_1g035400 81.749 526 87 3 144 660 53 578 0.0 867
MS.gene041029.t1 MTR_8g070070 73.673 471 120 3 192 659 299 768 0.0 746
MS.gene041029.t1 MTR_8g071030 61.141 561 173 5 143 659 189 748 0.0 712
MS.gene041029.t1 MTR_8g070075 50.980 714 265 11 7 656 66 758 0.0 706
MS.gene041029.t1 MTR_6g044690 56.771 576 202 12 103 647 5 564 0.0 620
MS.gene041029.t1 MTR_0376s0030 54.639 582 217 11 112 660 11 578 0.0 594
MS.gene041029.t1 MTR_6g043960 54.475 514 175 10 161 647 1 482 0.0 525
MS.gene041029.t1 MTR_2g054460 51.923 520 165 12 154 647 4 464 3.31e-171 497
MS.gene041029.t1 MTR_7g088370 41.818 495 265 13 159 647 203 680 3.22e-113 356
MS.gene041029.t1 MTR_3g011440 37.570 535 299 14 136 646 110 633 5.78e-108 341
MS.gene041029.t1 MTR_5g013420 36.116 587 339 16 77 652 504 1065 5.77e-107 348
MS.gene041029.t1 MTR_5g013420 36.116 587 339 16 77 652 504 1065 6.89e-107 348
MS.gene041029.t1 MTR_8g042750 39.960 503 279 14 159 648 167 659 3.77e-105 334
MS.gene041029.t1 MTR_4g010830 37.302 504 286 11 159 652 473 956 1.26e-99 327
MS.gene041029.t1 MTR_4g010550 37.161 479 237 14 185 652 15 440 4.70e-91 290
MS.gene041029.t1 MTR_6g061270 38.716 483 268 13 190 652 196 670 5.47e-90 295
MS.gene041029.t1 MTR_7g084090 38.763 485 266 14 190 652 258 733 1.32e-88 292
MS.gene041029.t1 MTR_6g061200 36.842 475 259 14 190 652 196 641 7.91e-81 270
MS.gene041029.t1 MTR_7g084090 41.551 361 190 11 190 536 258 611 1.13e-71 245
MS.gene041029.t1 MTR_1g048950 32.341 504 285 12 158 645 44 507 1.33e-57 204
MS.gene041029.t1 MTR_7g445710 30.103 485 237 16 193 651 110 518 5.77e-53 191
MS.gene041029.t1 MTR_7g445530 30.063 479 233 16 193 645 110 512 2.71e-52 188
MS.gene041029.t1 MTR_7g450730 30.472 466 229 14 193 653 107 482 4.16e-50 182
MS.gene041029.t1 MTR_7g052480 32.692 312 196 8 353 654 227 534 1.13e-40 157
MS.gene041029.t1 MTR_6g044000 45.833 120 47 1 161 262 1 120 7.54e-29 113
MS.gene041029.t1 MTR_6g044000 77.358 53 12 0 595 647 117 169 1.28e-21 92.8
MS.gene041029.t1 MTR_7g445600 32.000 150 65 1 496 645 243 355 1.69e-21 97.1
MS.gene041029.t1 MTR_7g445600 36.508 126 69 3 193 318 106 220 4.84e-15 77.4
MS.gene041029.t1 MTR_1g080340 27.157 313 157 12 397 653 269 566 4.28e-19 92.0
MS.gene041029.t1 MTR_1g069570 25.161 310 162 10 397 651 430 724 4.34e-19 92.4
MS.gene041029.t1 MTR_5g098680 37.179 156 85 3 218 367 267 415 4.55e-19 92.0
MS.gene041029.t1 MTR_8g078490 29.891 184 115 3 464 645 1058 1229 2.13e-18 90.5
MS.gene041029.t1 MTR_4g132610 28.804 184 117 3 464 645 852 1023 6.89e-18 88.6
MS.gene041029.t1 MTR_6g027690 27.477 222 134 6 441 660 215 411 1.02e-17 86.7
MS.gene041029.t1 MTR_8g078505 29.508 183 115 4 464 645 346 515 1.21e-17 87.0
MS.gene041029.t1 MTR_5g018850 32.086 187 107 5 464 646 1312 1482 1.22e-17 88.2
MS.gene041029.t1 MTR_8g102580 34.615 156 89 3 218 367 261 409 1.66e-17 87.0
MS.gene041029.t1 MTR_7g098390 25.000 312 150 13 397 647 388 676 6.87e-16 82.0
MS.gene041029.t1 MTR_1g069570 25.573 262 126 9 397 604 430 676 1.12e-14 78.2
MS.gene041029.t1 MTR_7g445810 34.591 159 84 6 193 346 123 266 8.10e-14 72.8
MS.gene041029.t1 MTR_3g114910 32.000 150 91 3 218 367 187 325 9.57e-14 73.9
MS.gene041029.t1 MTR_1g064770 43.750 64 35 1 476 538 28 91 3.74e-12 63.2
MS.gene041029.t1 MTR_4g131630 53.846 52 21 1 592 643 1 49 7.21e-11 58.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene041029.t1 AT4G13460 54.766 661 273 10 10 660 6 650 0.0 705
MS.gene041029.t1 AT4G13460 54.766 661 273 10 10 660 6 650 0.0 705
MS.gene041029.t1 AT2G33290 52.527 653 267 11 21 660 29 651 0.0 672
MS.gene041029.t1 AT2G33290 52.527 653 267 11 21 660 29 651 0.0 672
MS.gene041029.t1 AT2G33290 52.527 653 267 11 21 660 29 651 0.0 672
MS.gene041029.t1 AT2G33290 52.527 653 267 11 21 660 29 651 0.0 672
MS.gene041029.t1 AT5G04940 38.889 504 277 12 159 648 155 641 1.13e-103 330
MS.gene041029.t1 AT5G04940 38.889 504 277 12 159 648 155 641 1.13e-103 330
MS.gene041029.t1 AT1G73100 40.430 465 254 12 194 648 189 640 9.57e-101 322
MS.gene041029.t1 AT2G22740 36.328 512 293 9 159 652 270 766 2.55e-96 314
MS.gene041029.t1 AT2G22740 36.328 512 293 9 159 652 270 766 2.55e-96 314
MS.gene041029.t1 AT2G35160 36.260 524 274 12 146 652 254 734 5.97e-96 312
MS.gene041029.t1 AT2G35160 36.260 524 274 12 146 652 290 770 1.57e-95 312
MS.gene041029.t1 AT2G35160 36.260 524 274 12 146 652 290 770 1.57e-95 312
MS.gene041029.t1 AT2G35160 36.260 524 274 12 146 652 290 770 1.57e-95 312
MS.gene041029.t1 AT2G35160 36.260 524 274 12 146 652 290 770 1.57e-95 312
MS.gene041029.t1 AT5G13960 36.253 491 273 16 190 654 126 602 1.19e-87 286
MS.gene041029.t1 AT5G13960 36.383 470 262 14 210 654 11 468 1.80e-86 280
MS.gene041029.t1 AT1G17770 37.124 466 269 12 195 648 209 662 2.63e-80 269
MS.gene041029.t1 AT2G24740 36.255 502 284 14 159 655 262 732 3.42e-76 259
MS.gene041029.t1 AT5G47150 36.331 278 161 7 92 367 61 324 2.14e-35 137
MS.gene041029.t1 AT5G47160 37.674 215 122 6 152 363 202 407 1.13e-28 119
MS.gene041029.t1 AT5G47160 37.674 215 122 6 152 363 202 407 1.13e-28 119
MS.gene041029.t1 AT5G47160 37.674 215 122 6 152 363 202 407 1.13e-28 119
MS.gene041029.t1 AT2G05900 36.257 171 104 3 255 425 26 191 2.53e-21 95.9
MS.gene041029.t1 AT2G23740 32.632 190 104 6 464 646 1177 1349 3.65e-21 99.4
MS.gene041029.t1 AT2G23740 32.632 190 104 6 464 646 1184 1356 3.69e-21 99.4
MS.gene041029.t1 AT2G23740 32.632 190 104 6 464 646 1184 1356 3.69e-21 99.4
MS.gene041029.t1 AT2G23740 32.632 190 104 6 464 646 1184 1356 3.69e-21 99.4
MS.gene041029.t1 AT3G03750 29.808 208 120 6 440 646 141 323 2.46e-18 87.4
MS.gene041029.t1 AT1G57820 35.669 157 87 4 218 367 277 426 6.09e-18 88.6
MS.gene041029.t1 AT1G57820 35.669 157 87 4 218 367 277 426 6.09e-18 88.6
MS.gene041029.t1 AT3G04380 24.183 306 162 11 397 647 130 420 9.28e-18 87.0
MS.gene041029.t1 AT3G04380 24.183 306 162 11 397 647 146 436 1.01e-17 87.0
MS.gene041029.t1 AT3G04380 24.183 306 162 11 397 647 119 409 1.07e-17 87.0
MS.gene041029.t1 AT3G04380 24.183 306 162 11 397 647 146 436 1.17e-17 87.0
MS.gene041029.t1 AT3G04380 24.183 306 162 11 397 647 103 393 1.35e-17 86.3
MS.gene041029.t1 AT3G04380 24.183 306 162 11 397 647 119 409 1.36e-17 86.7
MS.gene041029.t1 AT1G57820 35.065 154 89 4 218 367 277 423 7.26e-17 85.1
MS.gene041029.t1 AT5G39550 33.121 157 91 4 218 367 262 411 6.37e-15 79.0
MS.gene041029.t1 AT2G23740 33.108 148 75 6 464 604 1184 1314 1.29e-14 78.6
MS.gene041029.t1 AT2G23740 33.108 148 75 6 464 604 1184 1314 1.29e-14 78.6
MS.gene041029.t1 AT1G04050 25.076 331 160 11 385 647 387 697 1.42e-14 77.8
MS.gene041029.t1 AT1G04050 25.076 331 160 11 385 647 387 697 1.42e-14 77.8
MS.gene041029.t1 AT1G04050 25.076 331 160 11 385 647 283 593 1.69e-14 77.4
MS.gene041029.t1 AT1G66040 33.566 143 82 3 218 354 262 397 8.86e-14 75.1
MS.gene041029.t1 AT1G66050 32.867 143 83 2 218 354 262 397 1.02e-13 75.1
MS.gene041029.t1 AT5G43990 27.586 174 108 4 476 647 503 660 3.69e-13 73.2
MS.gene041029.t1 AT5G43990 27.586 174 108 4 476 647 503 660 3.69e-13 73.2
MS.gene041029.t1 AT5G43990 27.586 174 108 4 476 647 503 660 3.69e-13 73.2
MS.gene041029.t1 AT5G43990 27.586 174 108 4 476 647 503 660 3.69e-13 73.2
MS.gene041029.t1 AT5G43990 27.586 174 108 4 476 647 526 683 4.08e-13 73.2
MS.gene041029.t1 AT5G43990 27.586 174 108 4 476 647 526 683 4.08e-13 73.2
MS.gene041029.t1 AT5G43990 27.011 174 109 4 476 647 546 703 4.73e-13 73.2
MS.gene041029.t1 AT5G43990 27.011 174 109 4 476 647 546 703 4.73e-13 73.2
MS.gene041029.t1 AT5G43990 27.011 174 109 4 476 647 523 680 4.84e-13 72.8
MS.gene041029.t1 AT5G43990 27.011 174 109 4 476 647 523 680 4.84e-13 72.8
MS.gene041029.t1 AT5G43990 27.011 174 109 4 476 647 523 680 4.84e-13 72.8
MS.gene041029.t1 AT5G43990 27.011 174 109 4 476 647 523 680 4.84e-13 72.8
MS.gene041029.t1 AT5G43990 27.011 174 109 4 476 647 434 591 4.85e-13 72.8
MS.gene041029.t1 AT5G43990 27.011 174 109 4 476 647 454 611 6.18e-13 72.4
MS.gene041029.t1 AT5G43990 27.011 174 109 4 476 647 454 611 6.18e-13 72.4
MS.gene041029.t1 AT5G43990 27.011 174 109 4 476 647 454 611 6.18e-13 72.4
MS.gene041029.t1 AT5G43990 27.011 174 109 4 476 647 454 611 6.18e-13 72.4
MS.gene041029.t1 AT1G57800 31.646 158 93 5 218 367 289 439 2.72e-12 70.5
MS.gene041029.t1 AT1G57800 32.857 140 80 4 218 350 289 421 7.31e-12 68.9

Find 181 sgRNAs with CRISPR-Local

Find 217 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCTACTAGTGTGATTGTTTC+TGG 0.079078 1.2:+19661879 MS.gene041029:CDS
CTAGGTTCAGACTTAGATTT+AGG 0.191105 1.2:-19661254 None:intergenic
TTAGATTTAGGTTTAGATTT+TGG 0.203811 1.2:-19661242 None:intergenic
CGGAACCGTGTTACACAAAA+AGG 0.211826 1.2:+19662581 MS.gene041029:CDS
TTATGATTCGGTTCGTGTTT+TGG 0.278166 1.2:+19661608 MS.gene041029:CDS
CTTGCATCTGCATTTGCATC+TGG 0.286549 1.2:-19661420 None:intergenic
GGGAGACTGGTTGGGGAGTT+AGG 0.302694 1.2:+19662636 MS.gene041029:CDS
GTATCCATCAATTCCTCCTT+TGG 0.310358 1.2:+19662841 MS.gene041029:CDS
AGAGAGTTCAGCCTTGATTA+TGG 0.322787 1.2:+19663019 MS.gene041029:CDS
GGTTGGAAGTGTTTAGATCT+AGG 0.329004 1.2:+19662615 MS.gene041029:CDS
AGGATTGTTGGCGCGATTCC+TGG 0.334668 1.2:+19661735 MS.gene041029:CDS
GCAAGCCACATTCCTCATTC+TGG 0.346436 1.2:-19662882 None:intergenic
GATGTTGGTAAAAGTGGTTT+TGG 0.352738 1.2:+19662146 MS.gene041029:CDS
GAAGGTACTTCTTCGACTTC+GGG 0.363101 1.2:+19662074 MS.gene041029:CDS
GGCTGGGATTGATTATTTGC+CGG 0.363483 1.2:+19661827 MS.gene041029:CDS
ATGGAGAGGAGTATGCATTA+TGG 0.365705 1.2:+19662017 MS.gene041029:CDS
TTGTGTGTGGTTGGTTTACA+TGG 0.365764 1.2:+19661795 MS.gene041029:CDS
TTTAAGTTATGGAGGATTGA+TGG 0.371705 1.2:+19662179 MS.gene041029:CDS
CACTTTGTGTTTCATGAAAG+TGG 0.374630 1.2:+19662398 MS.gene041029:CDS
GGCGGCGTCGACGCCGGCGC+CGG 0.374770 1.2:-19661316 None:intergenic
TAGATCTAGGGAGACTGGTT+GGG 0.375144 1.2:+19662628 MS.gene041029:CDS
GCTGATGGAAATGTTTGGTT+TGG 0.379538 1.2:-19661120 None:intergenic
GTTTGGATTATGAGGATTCA+TGG 0.380762 1.2:-19661103 None:intergenic
GTATGGAGCCTGTCAGTATA+AGG 0.386131 1.2:+19662306 MS.gene041029:CDS
TCGGAAAATCTCCGCCATTC+TGG 0.390186 1.2:-19661337 None:intergenic
TTCGAACAGGTGGACGGAAT+GGG 0.394764 1.2:+19662778 MS.gene041029:CDS
GTCAGTTTCGTGACGTTGTC+AGG 0.396777 1.2:+19661571 MS.gene041029:CDS
TGAAGGTACTTCTTCGACTT+CGG 0.398545 1.2:+19662073 MS.gene041029:CDS
ATGTTTATGATGGTTTGTAT+AGG 0.399652 1.2:+19662105 MS.gene041029:CDS
CATTCTGGCGGCGTCGACGC+CGG 0.406416 1.2:-19661322 None:intergenic
GACGAGGATGGTTTATGATT+CGG 0.406490 1.2:+19661596 MS.gene041029:CDS
AATGACGGATGTTGGGTTAC+CGG 0.408229 1.2:+19661542 MS.gene041029:CDS
CGGCGTCGACGCCGCCAGAA+TGG 0.408674 1.2:+19661323 MS.gene041029:CDS
TCATCCCGAGGCTCTTGCTT+CGG 0.409571 1.2:-19661174 None:intergenic
TAAATGCACCAGCTTGAATA+AGG 0.411317 1.2:-19662667 None:intergenic
TGGAGAGGAGTATGCATTAT+GGG 0.415278 1.2:+19662018 MS.gene041029:CDS
GTCGACGCCGGCGCCGGTGG+TGG 0.415602 1.2:-19661310 None:intergenic
TGTATAGGATTATTGAATGC+TGG 0.416427 1.2:+19662120 MS.gene041029:CDS
GTAGTTGTCCGCCTCATTGT+CGG 0.419366 1.2:+19662561 MS.gene041029:CDS
ACAAACTGAACCATCACATT+AGG 0.419575 1.2:-19662926 None:intergenic
GCGATTCCTGGGATTTGTAT+TGG 0.420322 1.2:+19661747 MS.gene041029:CDS
CATTTATATGCGAGTACACT+GGG 0.423254 1.2:+19662684 MS.gene041029:CDS
AAATCCAAAGGAGGAATTGA+TGG 0.424705 1.2:-19662845 None:intergenic
AGAAGCCCGCTTTGACTGTA+AGG 0.435492 1.2:-19662497 None:intergenic
GACGCCGGCGCCGGTGGTGG+TGG 0.437295 1.2:-19661307 None:intergenic
TGCATTATGGGATTGAGGTA+AGG 0.440994 1.2:+19662030 MS.gene041029:CDS
TCTTGATATTTCCAAGGGTA+TGG 0.441501 1.2:+19662289 MS.gene041029:CDS
AATCGCGATAAGAGGATTGT+TGG 0.442442 1.2:+19661723 MS.gene041029:CDS
CTCTTGATGTGTCCAGAATG+AGG 0.451204 1.2:+19662870 MS.gene041029:CDS
GGTAAGGTTTATGTTTATGA+TGG 0.452304 1.2:+19662095 MS.gene041029:CDS
GATTGATGGTCAAGCTAAGA+TGG 0.453129 1.2:+19662193 MS.gene041029:CDS
TCACGAAACTGACGCTGATC+CGG 0.454247 1.2:-19661561 None:intergenic
GGGGTGCTGATGGAAATGTT+TGG 0.454594 1.2:-19661125 None:intergenic
GTTGGAAGTGTTTAGATCTA+GGG 0.456470 1.2:+19662616 MS.gene041029:CDS
GTGTTTAGATCTAGGGAGAC+TGG 0.456502 1.2:+19662623 MS.gene041029:CDS
CTTGTTCGAATGACGGATGT+TGG 0.459771 1.2:+19661534 MS.gene041029:CDS
GCTATTGTTCCGGTTTCTGC+TGG 0.463618 1.2:+19661444 MS.gene041029:CDS
GATTGTTTCTGGTGGGTATG+AGG 0.465601 1.2:+19661890 MS.gene041029:CDS
TTGTTCGAATGACGGATGTT+GGG 0.470012 1.2:+19661535 MS.gene041029:CDS
AATGTTTGGTTTGGATTATG+AGG 0.470379 1.2:-19661111 None:intergenic
GGCGTCGACGCCGGCGCCGG+TGG 0.471937 1.2:-19661313 None:intergenic
AGATCTAGGGAGACTGGTTG+GGG 0.471997 1.2:+19662629 MS.gene041029:CDS
GTTATTATTTACTCGGGTCA+TGG 0.472036 1.2:+19661933 MS.gene041029:CDS
AGGTGATGTTATTATTTACT+CGG 0.473486 1.2:+19661926 MS.gene041029:CDS
TACTTCTTCGACTTCGGGTA+AGG 0.474074 1.2:+19662079 MS.gene041029:CDS
TGGTTTGATGTTGGTAAAAG+TGG 0.475144 1.2:+19662140 MS.gene041029:CDS
GCCCTTGAGAAACAAAATCT+AGG 0.476619 1.2:-19661272 None:intergenic
GAACAACCAACCACCACCAC+CGG 0.476859 1.2:+19661297 MS.gene041029:CDS
GGATTGTTGGCGCGATTCCT+GGG 0.482675 1.2:+19661736 MS.gene041029:CDS
TTGGCTATGGCTGAAGAAGA+AGG 0.484128 1.2:+19661627 MS.gene041029:CDS
AGGATGGAGTTGTGTGTGGT+TGG 0.488005 1.2:+19661786 MS.gene041029:CDS
CCGGCGCCGGTGGTGGTGGT+TGG 0.488719 1.2:-19661303 None:intergenic
CATGAAAGTGGGAATGCGAC+AGG 0.494424 1.2:+19662410 MS.gene041029:CDS
GCTGGGATTGATTATTTGCC+GGG 0.495001 1.2:+19661828 MS.gene041029:CDS
TTTCGAACAGGTGGACGGAA+TGG 0.498413 1.2:+19662777 MS.gene041029:CDS
GCATTTATATGCGAGTACAC+TGG 0.498857 1.2:+19662683 MS.gene041029:CDS
TACACCGAAGCAAGAGCCTC+GGG 0.501130 1.2:+19661170 MS.gene041029:CDS
AAAAGGGCTTAAACATAGGT+TGG 0.501382 1.2:+19662598 MS.gene041029:CDS
TGTGGCTGAATCGCGATAAG+AGG 0.502293 1.2:+19661715 MS.gene041029:CDS
AATTTATCTCTGATTCAAGA+TGG 0.504650 1.2:+19662803 MS.gene041029:CDS
AATAATGCCCCTCCTCCTGC+TGG 0.512692 1.2:+19661480 MS.gene041029:CDS
TATATCTCTTGATATTTCCA+AGG 0.512997 1.2:+19662283 MS.gene041029:CDS
TTACTCGGGTCATGGTGGGC+AGG 0.515645 1.2:+19661941 MS.gene041029:CDS
GCATTATGGGATTGAGGTAA+GGG 0.515857 1.2:+19662031 MS.gene041029:CDS
TCACATTATGCTGTTTGCGA+TGG 0.516973 1.2:+19662979 MS.gene041029:CDS
GGATATTGAAATTCTTGCGT+TGG 0.517003 1.2:-19661198 None:intergenic
GGTGATGTTATTATTTACTC+GGG 0.517521 1.2:+19661927 MS.gene041029:CDS
ATTCGCGGTGTGAGGTATGA+AGG 0.522477 1.2:+19662056 MS.gene041029:CDS
TTATTCTCACCAGCAGAAAC+CGG 0.525158 1.2:-19661453 None:intergenic
CTAGTGTGATTGTTTCTGGT+GGG 0.526236 1.2:+19661883 MS.gene041029:CDS
AGCATAGGAAAAGGAATACC+AGG 0.526910 1.2:-19661147 None:intergenic
TGCCCCTCCTCCTGCTGGTG+AGG 0.529286 1.2:+19661485 MS.gene041029:CDS
TACATGGTCAACCACAGGCT+GGG 0.530548 1.2:+19661811 MS.gene041029:CDS
ACTAGTGTGATTGTTTCTGG+TGG 0.533046 1.2:+19661882 MS.gene041029:CDS
AACCTCACCAGCAGGAGGAG+GGG 0.534020 1.2:-19661487 None:intergenic
GAGTATGCATTATGGGATTG+AGG 0.534486 1.2:+19662025 MS.gene041029:CDS
ACTTTGTGTTTCATGAAAGT+GGG 0.535570 1.2:+19662399 MS.gene041029:CDS
CAAAGCGGGCTTCTCTTGAA+AGG 0.538573 1.2:+19662506 MS.gene041029:CDS
ATTGAATGCTGGTTTGATGT+TGG 0.540002 1.2:+19662131 MS.gene041029:CDS
TCAAGGCTGAACTCTCTCAA+TGG 0.540411 1.2:-19663013 None:intergenic
ACAATCACACTAGTAGCAAT+CGG 0.540891 1.2:-19661873 None:intergenic
TTAGATCTAGGGAGACTGGT+TGG 0.541898 1.2:+19662627 MS.gene041029:CDS
CCAACCACCACCACCGGCGC+CGG 0.541973 1.2:+19661303 MS.gene041029:CDS
ATATCTCTTGATATTTCCAA+GGG 0.542298 1.2:+19662284 MS.gene041029:CDS
TCATTGGACCTTATTCAAGC+TGG 0.545200 1.2:+19662659 MS.gene041029:CDS
ACTTTCCTTACAGTCAAAGC+GGG 0.545405 1.2:+19662492 MS.gene041029:CDS
TTCATCAGAAGCTGGAAGGT+GGG 0.546457 1.2:+19661985 MS.gene041029:CDS
TTCGGTGTAAGCATAGGAAA+AGG 0.548026 1.2:-19661156 None:intergenic
TTCCGACGCTCATTCACTGA+AGG 0.548549 1.2:+19661354 MS.gene041029:CDS
TGGTTGGGGAGTTAGGTCAT+TGG 0.553990 1.2:+19662643 MS.gene041029:CDS
TATTAATGAATCACCACTCA+TGG 0.554494 1.2:-19662741 None:intergenic
ACATTCACAACCTCACCAGC+AGG 0.555602 1.2:-19661495 None:intergenic
ACTGACAGGCTCCATACCCT+TGG 0.556578 1.2:-19662300 None:intergenic
GCTTCTCTTGAAAGGAAAGC+CGG 0.556611 1.2:+19662514 MS.gene041029:CDS
ATTGATGGTCAAGCTAAGAT+GGG 0.559091 1.2:+19662194 MS.gene041029:CDS
TTTCATCAGAAGCTGGAAGG+TGG 0.563122 1.2:+19661984 MS.gene041029:CDS
GTGACGTTGTCAGGAGGACG+AGG 0.564577 1.2:+19661580 MS.gene041029:CDS
TTACATGGTCAACCACAGGC+TGG 0.564688 1.2:+19661810 MS.gene041029:CDS
CGATGAGGAGTCGAGGATTG+TGG 0.566797 1.2:+19661697 MS.gene041029:CDS
TCGAACAGGTGGACGGAATG+GGG 0.569248 1.2:+19662779 MS.gene041029:CDS
CCGGGGAGTATGAGTTCGAA+TGG 0.571907 1.2:+19661846 MS.gene041029:CDS
GCAGGATAAGAATTCGAGGC+AGG 0.572812 1.2:+19661959 MS.gene041029:CDS
TGGTTTACATGGTCAACCAC+AGG 0.573000 1.2:+19661806 MS.gene041029:CDS
AGATGCAAGAGCTATTGTTC+CGG 0.573112 1.2:+19661434 MS.gene041029:CDS
CATCAGCTACACCATAATCA+AGG 0.573838 1.2:-19663030 None:intergenic
TGGCTATGGCTGAAGAAGAA+GGG 0.574030 1.2:+19661628 MS.gene041029:CDS
ATTATTTACTCGGGTCATGG+TGG 0.574077 1.2:+19661936 MS.gene041029:CDS
GTATAGGATGGAGTTGTGTG+TGG 0.574388 1.2:+19661782 MS.gene041029:CDS
GGCTGAACTCTCTCAATGGA+GGG 0.575518 1.2:-19663009 None:intergenic
GGAAGGTGGGAATCTTGCTA+TGG 0.576684 1.2:+19661998 MS.gene041029:CDS
TAAAGAGCTTGTTCGAATGA+CGG 0.576987 1.2:+19661527 MS.gene041029:CDS
CGTTGTCAGGAGGACGAGGA+TGG 0.578652 1.2:+19661584 MS.gene041029:CDS
TCTTGCTTCGGTGTAAGCAT+AGG 0.581620 1.2:-19661162 None:intergenic
TGCGACAGGTTGTCAATGTG+AGG 0.581743 1.2:+19662424 MS.gene041029:CDS
TAGCTCAACTCCTAATGTGA+TGG 0.586959 1.2:+19662916 MS.gene041029:CDS
ACAACCTCACCAGCAGGAGG+AGG 0.589030 1.2:-19661489 None:intergenic
GAAAATCTCCGCCATTCTGG+CGG 0.591102 1.2:-19661334 None:intergenic
TTACACCGAAGCAAGAGCCT+CGG 0.592731 1.2:+19661169 MS.gene041029:CDS
GTGGGCAGGATAAGAATTCG+AGG 0.592819 1.2:+19661955 MS.gene041029:CDS
TTATTTACTCGGGTCATGGT+GGG 0.593009 1.2:+19661937 MS.gene041029:CDS
CTTTCATGAAACACAAAGTG+TGG 0.594064 1.2:-19662395 None:intergenic
CGTCGACGCCGCCAGAATGG+CGG 0.594115 1.2:+19661326 MS.gene041029:CDS
AGGCTGAACTCTCTCAATGG+AGG 0.596120 1.2:-19663010 None:intergenic
AAGTGTGGAAAAGTAGCCCT+AGG 0.596819 1.2:-19662380 None:intergenic
ATTGAGGTAAGGGTTATTCG+CGG 0.599919 1.2:+19662041 MS.gene041029:CDS
TCAAGAGATATAACACACAT+AGG 0.602330 1.2:-19662272 None:intergenic
TCTTGCGTTGGTTCATCCCG+AGG 0.604080 1.2:-19661186 None:intergenic
GGAGGAATTGATGGATACGA+AGG 0.604652 1.2:-19662836 None:intergenic
CTGGTGAGGTTGTGAATGTA+CGG 0.604747 1.2:+19661499 MS.gene041029:CDS
CAACCTCACCAGCAGGAGGA+GGG 0.605048 1.2:-19661488 None:intergenic
ATCCTTCAGTGAATGAGCGT+CGG 0.615611 1.2:-19661356 None:intergenic
ACATCACCAATACAAATCCC+AGG 0.617403 1.2:-19661753 None:intergenic
TCAGAAATTATGACCATGAG+TGG 0.618462 1.2:+19662728 MS.gene041029:CDS
TAAGGGTTATTCGCGGTGTG+AGG 0.624788 1.2:+19662048 MS.gene041029:CDS
ACACTGGGGTTGTTCTGACA+AGG 0.627478 1.2:+19662699 MS.gene041029:CDS
CCATTCGAACTCATACTCCC+CGG 0.628119 1.2:-19661846 None:intergenic
GTGGGAATCTTGCTATGGAG+AGG 0.630151 1.2:+19662003 MS.gene041029:CDS
CTGGGATTGATTATTTGCCG+GGG 0.635375 1.2:+19661829 MS.gene041029:CDS
TATGAGGATGATGTTGATGA+AGG 0.637266 1.2:+19661906 MS.gene041029:CDS
GGAATTGATGGATACGAAGG+AGG 0.638458 1.2:-19662833 None:intergenic
GCGACAGGTTGTCAATGTGA+GGG 0.638640 1.2:+19662425 MS.gene041029:CDS
GACTTTCCTTACAGTCAAAG+CGG 0.639876 1.2:+19662491 MS.gene041029:CDS
ATCGCAAACAGCATAATGTG+AGG 0.644756 1.2:-19662977 None:intergenic
GTAGCTGATGATGAGTTGAC+TGG 0.647668 1.2:+19663043 MS.gene041029:CDS
CACATAGGTTTATAACACAA+AGG 0.649300 1.2:-19662257 None:intergenic
TCGCAAACAGCATAATGTGA+GGG 0.654166 1.2:-19662976 None:intergenic
TGAAAGCTTCTACTACGATG+AGG 0.657632 1.2:+19661682 MS.gene041029:CDS
AGTTTCGTGACGTTGTCAGG+AGG 0.665905 1.2:+19661574 MS.gene041029:CDS
TGAGGCGGACAACTACAAGA+AGG 0.667023 1.2:-19662554 None:intergenic
AAATAATCAATCCCAGCCTG+TGG 0.670495 1.2:-19661822 None:intergenic
TTCACAACCTCACCAGCAGG+AGG 0.670673 1.2:-19661492 None:intergenic
CACTGGGGTTGTTCTGACAA+GGG 0.671410 1.2:+19662700 MS.gene041029:CDS
TCTACTACGATGAGGAGTCG+AGG 0.680653 1.2:+19661690 MS.gene041029:CDS
ACACGGTTCCGACAATGAGG+CGG 0.681770 1.2:-19662569 None:intergenic
GGAAGATACTCAAAACACAT+CGG 0.687151 1.2:-19662359 None:intergenic
GCATAGGAAAAGGAATACCA+GGG 0.688262 1.2:-19661146 None:intergenic
GTAACACGGTTCCGACAATG+AGG 0.703986 1.2:-19662572 None:intergenic
CATAGGAAAAGGAATACCAG+GGG 0.729249 1.2:-19661145 None:intergenic
TGTGTCCAGAATGAGGAATG+TGG 0.743322 1.2:+19662877 MS.gene041029:CDS
ATTTATATGCGAGTACACTG+GGG 0.744900 1.2:+19662685 MS.gene041029:CDS
ATAGGAAAAGGAATACCAGG+GGG 0.791262 1.2:-19661144 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GTGTTTTTAAGTTTAAGTTA+TGG + chr1.2:19662168-19662187 MS.gene041029:CDS 20.0%
!!! TGTTTTTGTTTCATAAAGAA+TGG + chr1.2:19662464-19662483 MS.gene041029:CDS 20.0%
!!! TTAGATTTAGGTTTAGATTT+TGG - chr1.2:19661245-19661264 None:intergenic 20.0%
!!! TTTTTAAGTTTAAGTTATGG+AGG + chr1.2:19662171-19662190 MS.gene041029:CDS 20.0%
! AATTTATCTCTGATTCAAGA+TGG + chr1.2:19662803-19662822 MS.gene041029:CDS 25.0%
! AGGTGATGTTATTATTTACT+CGG + chr1.2:19661926-19661945 MS.gene041029:CDS 25.0%
! ATATCTCTTGATATTTCCAA+GGG + chr1.2:19662284-19662303 MS.gene041029:CDS 25.0%
! TATATCTCTTGATATTTCCA+AGG + chr1.2:19662283-19662302 MS.gene041029:CDS 25.0%
!! ATGTTTATGATGGTTTGTAT+AGG + chr1.2:19662105-19662124 MS.gene041029:CDS 25.0%
!!! AAGAAGGGAATTTTAATGTT+AGG + chr1.2:19661643-19661662 MS.gene041029:CDS 25.0%
!!! TTTAGGTTTAGATTTTGGTT+CGG - chr1.2:19661240-19661259 None:intergenic 25.0%
ACATCAAGAGAAAAATCCAA+AGG - chr1.2:19662860-19662879 None:intergenic 30.0%
ACTTTGTGTTTCATGAAAGT+GGG + chr1.2:19662399-19662418 MS.gene041029:CDS 30.0%
CACATAGGTTTATAACACAA+AGG - chr1.2:19662260-19662279 None:intergenic 30.0%
GGTAAGGTTTATGTTTATGA+TGG + chr1.2:19662095-19662114 MS.gene041029:CDS 30.0%
GGTGATGTTATTATTTACTC+GGG + chr1.2:19661927-19661946 MS.gene041029:CDS 30.0%
TATTAATGAATCACCACTCA+TGG - chr1.2:19662744-19662763 None:intergenic 30.0%
TCAAGAGATATAACACACAT+AGG - chr1.2:19662275-19662294 None:intergenic 30.0%
TGTATAGGATTATTGAATGC+TGG + chr1.2:19662120-19662139 MS.gene041029:CDS 30.0%
! TTAAAAAGCCTTATACTGAC+AGG - chr1.2:19662317-19662336 None:intergenic 30.0%
! TTCGGTAAATTTTCTAGGTT+TGG - chr1.2:19661222-19661241 None:intergenic 30.0%
! TTTAAGTTATGGAGGATTGA+TGG + chr1.2:19662179-19662198 MS.gene041029:CDS 30.0%
!! AACCTAGATTTTGTTTCTCA+AGG + chr1.2:19661270-19661289 MS.gene041029:CDS 30.0%
!! AATGTTTGGTTTGGATTATG+AGG - chr1.2:19661114-19661133 None:intergenic 30.0%
!! ACCTAGATTTTGTTTCTCAA+GGG + chr1.2:19661271-19661290 MS.gene041029:CDS 30.0%
!! GATGGGTAGTTTGATTTTAA+AGG + chr1.2:19662211-19662230 MS.gene041029:CDS 30.0%
!! TGATGTGTTTTTGTATAGGA+TGG + chr1.2:19661770-19661789 MS.gene041029:CDS 30.0%
!!! TTGGTGATGTGTTTTTGTAT+AGG + chr1.2:19661766-19661785 MS.gene041029:CDS 30.0%
!!! TTTGGTTCGGTAAATTTTCT+AGG - chr1.2:19661227-19661246 None:intergenic 30.0%
AAAAGGGCTTAAACATAGGT+TGG + chr1.2:19662598-19662617 MS.gene041029:CDS 35.0%
AAATCCAAAGGAGGAATTGA+TGG - chr1.2:19662848-19662867 None:intergenic 35.0%
ACAAACTGAACCATCACATT+AGG - chr1.2:19662929-19662948 None:intergenic 35.0%
ACAATCACACTAGTAGCAAT+CGG - chr1.2:19661876-19661895 None:intergenic 35.0%
ATTTATATGCGAGTACACTG+GGG + chr1.2:19662685-19662704 MS.gene041029:CDS 35.0%
CACAAAAAGGGCTTAAACAT+AGG + chr1.2:19662594-19662613 MS.gene041029:CDS 35.0%
CACTTTGTGTTTCATGAAAG+TGG + chr1.2:19662398-19662417 MS.gene041029:CDS 35.0%
CATTTATATGCGAGTACACT+GGG + chr1.2:19662684-19662703 MS.gene041029:CDS 35.0%
CTAGGTTCAGACTTAGATTT+AGG - chr1.2:19661257-19661276 None:intergenic 35.0%
CTTTCATGAAACACAAAGTG+TGG - chr1.2:19662398-19662417 None:intergenic 35.0%
GGAAGATACTCAAAACACAT+CGG - chr1.2:19662362-19662381 None:intergenic 35.0%
GGATATTGAAATTCTTGCGT+TGG - chr1.2:19661201-19661220 None:intergenic 35.0%
GTTATTATTTACTCGGGTCA+TGG + chr1.2:19661933-19661952 MS.gene041029:CDS 35.0%
TAAATGCACCAGCTTGAATA+AGG - chr1.2:19662670-19662689 None:intergenic 35.0%
TCAAGAGAAAAATCCAAAGG+AGG - chr1.2:19662857-19662876 None:intergenic 35.0%
TCAGAAATTATGACCATGAG+TGG + chr1.2:19662728-19662747 MS.gene041029:CDS 35.0%
TCTTGATATTTCCAAGGGTA+TGG + chr1.2:19662289-19662308 MS.gene041029:CDS 35.0%
! ATTGATGGTCAAGCTAAGAT+GGG + chr1.2:19662194-19662213 MS.gene041029:CDS 35.0%
! TAAAGAGCTTGTTCGAATGA+CGG + chr1.2:19661527-19661546 MS.gene041029:CDS 35.0%
! TAAGCCCTTTTTGTGTAACA+CGG - chr1.2:19662589-19662608 None:intergenic 35.0%
! TATGAGGATGATGTTGATGA+AGG + chr1.2:19661906-19661925 MS.gene041029:CDS 35.0%
! TGGTTTGATGTTGGTAAAAG+TGG + chr1.2:19662140-19662159 MS.gene041029:CDS 35.0%
!! ATTGAATGCTGGTTTGATGT+TGG + chr1.2:19662131-19662150 MS.gene041029:CDS 35.0%
!! GATGTTGGTAAAAGTGGTTT+TGG + chr1.2:19662146-19662165 MS.gene041029:CDS 35.0%
!! GGGTAGTTTGATTTTAAAGG+AGG + chr1.2:19662214-19662233 MS.gene041029:CDS 35.0%
!! GTGTTTTGAGTATCTTCCTA+GGG + chr1.2:19662364-19662383 MS.gene041029:CDS 35.0%
!! GTTGGAAGTGTTTAGATCTA+GGG + chr1.2:19662616-19662635 MS.gene041029:CDS 35.0%
!! TGTGTTTTGAGTATCTTCCT+AGG + chr1.2:19662363-19662382 MS.gene041029:CDS 35.0%
!!! TAAAGGAGGCTTTTTTGCTT+AGG + chr1.2:19662228-19662247 MS.gene041029:CDS 35.0%
!!! TTATGATTCGGTTCGTGTTT+TGG + chr1.2:19661608-19661627 MS.gene041029:CDS 35.0%
AAATAATCAATCCCAGCCTG+TGG - chr1.2:19661825-19661844 None:intergenic 40.0%
AATCGCGATAAGAGGATTGT+TGG + chr1.2:19661723-19661742 MS.gene041029:CDS 40.0%
ACATCACCAATACAAATCCC+AGG - chr1.2:19661756-19661775 None:intergenic 40.0%
ACTTTCCTTACAGTCAAAGC+GGG + chr1.2:19662492-19662511 MS.gene041029:CDS 40.0%
AGAGAGTTCAGCCTTGATTA+TGG + chr1.2:19663019-19663038 MS.gene041029:CDS 40.0%
AGATGCAAGAGCTATTGTTC+CGG + chr1.2:19661434-19661453 MS.gene041029:CDS 40.0%
AGCATAGGAAAAGGAATACC+AGG - chr1.2:19661150-19661169 None:intergenic 40.0%
ATAGGAAAAGGAATACCAGG+GGG - chr1.2:19661147-19661166 None:intergenic 40.0%
ATCGCAAACAGCATAATGTG+AGG - chr1.2:19662980-19662999 None:intergenic 40.0%
ATTATTTACTCGGGTCATGG+TGG + chr1.2:19661936-19661955 MS.gene041029:CDS 40.0%
ATTGAGGTAAGGGTTATTCG+CGG + chr1.2:19662041-19662060 MS.gene041029:CDS 40.0%
CACCTGTTCGAAAAACGATT+CGG - chr1.2:19662770-19662789 None:intergenic 40.0%
CATAGGAAAAGGAATACCAG+GGG - chr1.2:19661148-19661167 None:intergenic 40.0%
CATCAGCTACACCATAATCA+AGG - chr1.2:19663033-19663052 None:intergenic 40.0%
GACGAGGATGGTTTATGATT+CGG + chr1.2:19661596-19661615 MS.gene041029:CDS 40.0%
GACTTTCCTTACAGTCAAAG+CGG + chr1.2:19662491-19662510 MS.gene041029:CDS 40.0%
GAGTATGCATTATGGGATTG+AGG + chr1.2:19662025-19662044 MS.gene041029:CDS 40.0%
GCATAGGAAAAGGAATACCA+GGG - chr1.2:19661149-19661168 None:intergenic 40.0%
GCATTATGGGATTGAGGTAA+GGG + chr1.2:19662031-19662050 MS.gene041029:CDS 40.0%
GCATTTATATGCGAGTACAC+TGG + chr1.2:19662683-19662702 MS.gene041029:CDS 40.0%
GCCCTTGAGAAACAAAATCT+AGG - chr1.2:19661275-19661294 None:intergenic 40.0%
GCTACTAGTGTGATTGTTTC+TGG + chr1.2:19661879-19661898 MS.gene041029:CDS 40.0%
GCTGATGGAAATGTTTGGTT+TGG - chr1.2:19661123-19661142 None:intergenic 40.0%
GGAACCGTGTTACACAAAAA+GGG + chr1.2:19662582-19662601 MS.gene041029:CDS 40.0%
GGACCACATTCAAAAATGAC+CGG - chr1.2:19662536-19662555 None:intergenic 40.0%
GTATCCATCAATTCCTCCTT+TGG + chr1.2:19662841-19662860 MS.gene041029:CDS 40.0%
TAGCTCAACTCCTAATGTGA+TGG + chr1.2:19662916-19662935 MS.gene041029:CDS 40.0%
TCATTGGACCTTATTCAAGC+TGG + chr1.2:19662659-19662678 MS.gene041029:CDS 40.0%
TCGCAAACAGCATAATGTGA+GGG - chr1.2:19662979-19662998 None:intergenic 40.0%
TGAAAGCTTCTACTACGATG+AGG + chr1.2:19661682-19661701 MS.gene041029:CDS 40.0%
TGCATTATGGGATTGAGGTA+AGG + chr1.2:19662030-19662049 MS.gene041029:CDS 40.0%
TTATTCTCACCAGCAGAAAC+CGG - chr1.2:19661456-19661475 None:intergenic 40.0%
TTATTTACTCGGGTCATGGT+GGG + chr1.2:19661937-19661956 MS.gene041029:CDS 40.0%
! ATGGAGAGGAGTATGCATTA+TGG + chr1.2:19662017-19662036 MS.gene041029:CDS 40.0%
! GATTGATGGTCAAGCTAAGA+TGG + chr1.2:19662193-19662212 MS.gene041029:CDS 40.0%
! GTTTTTCATCAGAAGCTGGA+AGG + chr1.2:19661981-19662000 MS.gene041029:CDS 40.0%
! TCACATTATGCTGTTTGCGA+TGG + chr1.2:19662979-19662998 MS.gene041029:CDS 40.0%
! TGGAGAGGAGTATGCATTAT+GGG + chr1.2:19662018-19662037 MS.gene041029:CDS 40.0%
! TTCGGTGTAAGCATAGGAAA+AGG - chr1.2:19661159-19661178 None:intergenic 40.0%
!! ACTAGTGTGATTGTTTCTGG+TGG + chr1.2:19661882-19661901 MS.gene041029:CDS 40.0%
!! ATCCGAATCGTTTTTCGAAC+AGG + chr1.2:19662765-19662784 MS.gene041029:CDS 40.0%
!! CTAGTGTGATTGTTTCTGGT+GGG + chr1.2:19661883-19661902 MS.gene041029:CDS 40.0%
!! GGTTGGAAGTGTTTAGATCT+AGG + chr1.2:19662615-19662634 MS.gene041029:CDS 40.0%
!! TGAAGGTACTTCTTCGACTT+CGG + chr1.2:19662073-19662092 MS.gene041029:CDS 40.0%
!! TTGTGTGTGGTTGGTTTACA+TGG + chr1.2:19661795-19661814 MS.gene041029:CDS 40.0%
!! TTGTTCGAATGACGGATGTT+GGG + chr1.2:19661535-19661554 MS.gene041029:CDS 40.0%
!!! AAGCCGGTCATTTTTGAATG+TGG + chr1.2:19662530-19662549 MS.gene041029:CDS 40.0%
AAGTGTGGAAAAGTAGCCCT+AGG - chr1.2:19662383-19662402 None:intergenic 45.0%
ATCCTTCAGTGAATGAGCGT+CGG - chr1.2:19661359-19661378 None:intergenic 45.0%
CGGAACCGTGTTACACAAAA+AGG + chr1.2:19662581-19662600 MS.gene041029:CDS 45.0%
CTCTTGATGTGTCCAGAATG+AGG + chr1.2:19662870-19662889 MS.gene041029:CDS 45.0%
CTGGGATTGATTATTTGCCG+GGG + chr1.2:19661829-19661848 MS.gene041029:CDS 45.0%
CTGGTGAGGTTGTGAATGTA+CGG + chr1.2:19661499-19661518 MS.gene041029:CDS 45.0%
CTTGCATCTGCATTTGCATC+TGG - chr1.2:19661423-19661442 None:intergenic 45.0%
GCGATTCCTGGGATTTGTAT+TGG + chr1.2:19661747-19661766 MS.gene041029:CDS 45.0%
GCTGGGATTGATTATTTGCC+GGG + chr1.2:19661828-19661847 MS.gene041029:CDS 45.0%
GCTTCTCTTGAAAGGAAAGC+CGG + chr1.2:19662514-19662533 MS.gene041029:CDS 45.0%
GGCTGGGATTGATTATTTGC+CGG + chr1.2:19661827-19661846 MS.gene041029:CDS 45.0%
GTATAGGATGGAGTTGTGTG+TGG + chr1.2:19661782-19661801 MS.gene041029:CDS 45.0%
GTATGGAGCCTGTCAGTATA+AGG + chr1.2:19662306-19662325 MS.gene041029:CDS 45.0%
GTGTTTAGATCTAGGGAGAC+TGG + chr1.2:19662623-19662642 MS.gene041029:CDS 45.0%
TACTTCTTCGACTTCGGGTA+AGG + chr1.2:19662079-19662098 MS.gene041029:CDS 45.0%
TCAAGGCTGAACTCTCTCAA+TGG - chr1.2:19663016-19663035 None:intergenic 45.0%
TGGCTATGGCTGAAGAAGAA+GGG + chr1.2:19661628-19661647 MS.gene041029:CDS 45.0%
TGGTTTACATGGTCAACCAC+AGG + chr1.2:19661806-19661825 MS.gene041029:CDS 45.0%
TGTGTCCAGAATGAGGAATG+TGG + chr1.2:19662877-19662896 MS.gene041029:CDS 45.0%
TTAGATCTAGGGAGACTGGT+TGG + chr1.2:19662627-19662646 MS.gene041029:CDS 45.0%
TTCATCAGAAGCTGGAAGGT+GGG + chr1.2:19661985-19662004 MS.gene041029:CDS 45.0%
TTGGCTATGGCTGAAGAAGA+AGG + chr1.2:19661627-19661646 MS.gene041029:CDS 45.0%
TTTCATCAGAAGCTGGAAGG+TGG + chr1.2:19661984-19662003 MS.gene041029:CDS 45.0%
! GCAGGTTTTTCATCAGAAGC+TGG + chr1.2:19661977-19661996 MS.gene041029:CDS 45.0%
! GGAATTGATGGATACGAAGG+AGG - chr1.2:19662836-19662855 None:intergenic 45.0%
! GGAGGAATTGATGGATACGA+AGG - chr1.2:19662839-19662858 None:intergenic 45.0%
! GTAGCTGATGATGAGTTGAC+TGG + chr1.2:19663043-19663062 MS.gene041029:CDS 45.0%
! GTCAATGTGAGGGCTTTTGT+GGG + chr1.2:19662435-19662454 MS.gene041029:CDS 45.0%
! TAGATCTAGGGAGACTGGTT+GGG + chr1.2:19662628-19662647 MS.gene041029:CDS 45.0%
! TCAATGTGAGGGCTTTTGTG+GGG + chr1.2:19662436-19662455 MS.gene041029:CDS 45.0%
! TCTTGCTTCGGTGTAAGCAT+AGG - chr1.2:19661165-19661184 None:intergenic 45.0%
! TGTCAATGTGAGGGCTTTTG+TGG + chr1.2:19662434-19662453 MS.gene041029:CDS 45.0%
!! AATGACGGATGTTGGGTTAC+CGG + chr1.2:19661542-19661561 MS.gene041029:CDS 45.0%
!! CGAATCGTTTTTCGAACAGG+TGG + chr1.2:19662768-19662787 MS.gene041029:CDS 45.0%
!! CTTGTTCGAATGACGGATGT+TGG + chr1.2:19661534-19661553 MS.gene041029:CDS 45.0%
!! GAAGGTACTTCTTCGACTTC+GGG + chr1.2:19662074-19662093 MS.gene041029:CDS 45.0%
!! GATTGTTTCTGGTGGGTATG+AGG + chr1.2:19661890-19661909 MS.gene041029:CDS 45.0%
!! TCGTTTTTCGAACAGGTGGA+CGG + chr1.2:19662772-19662791 MS.gene041029:CDS 45.0%
!!! TTCGGTTCGTGTTTTGGCTA+TGG + chr1.2:19661614-19661633 MS.gene041029:CDS 45.0%
ACACTGGGGTTGTTCTGACA+AGG + chr1.2:19662699-19662718 MS.gene041029:CDS 50.0%
ACATTCACAACCTCACCAGC+AGG - chr1.2:19661498-19661517 None:intergenic 50.0%
AGAAGCCCGCTTTGACTGTA+AGG - chr1.2:19662500-19662519 None:intergenic 50.0%
AGGATGGAGTTGTGTGTGGT+TGG + chr1.2:19661786-19661805 MS.gene041029:CDS 50.0%
AGGCTGAACTCTCTCAATGG+AGG - chr1.2:19663013-19663032 None:intergenic 50.0%
AGTTTCGTGACGTTGTCAGG+AGG + chr1.2:19661574-19661593 MS.gene041029:CDS 50.0%
ATTCGCGGTGTGAGGTATGA+AGG + chr1.2:19662056-19662075 MS.gene041029:CDS 50.0%
CACTGGGGTTGTTCTGACAA+GGG + chr1.2:19662700-19662719 MS.gene041029:CDS 50.0%
CATGAAAGTGGGAATGCGAC+AGG + chr1.2:19662410-19662429 MS.gene041029:CDS 50.0%
CCATTCGAACTCATACTCCC+CGG - chr1.2:19661849-19661868 None:intergenic 50.0%
GAAAATCTCCGCCATTCTGG+CGG - chr1.2:19661337-19661356 None:intergenic 50.0%
GCAAGCCACATTCCTCATTC+TGG - chr1.2:19662885-19662904 None:intergenic 50.0%
GCAGGATAAGAATTCGAGGC+AGG + chr1.2:19661959-19661978 MS.gene041029:CDS 50.0%
GCGACAGGTTGTCAATGTGA+GGG + chr1.2:19662425-19662444 MS.gene041029:CDS 50.0%
GCTATTGTTCCGGTTTCTGC+TGG + chr1.2:19661444-19661463 MS.gene041029:CDS 50.0%
GGAAGGTGGGAATCTTGCTA+TGG + chr1.2:19661998-19662017 MS.gene041029:CDS 50.0%
GGCTGAACTCTCTCAATGGA+GGG - chr1.2:19663012-19663031 None:intergenic 50.0%
GTAACACGGTTCCGACAATG+AGG - chr1.2:19662575-19662594 None:intergenic 50.0%
GTAGTTGTCCGCCTCATTGT+CGG + chr1.2:19662561-19662580 MS.gene041029:CDS 50.0%
GTCAGTTTCGTGACGTTGTC+AGG + chr1.2:19661571-19661590 MS.gene041029:CDS 50.0%
GTGGGCAGGATAAGAATTCG+AGG + chr1.2:19661955-19661974 MS.gene041029:CDS 50.0%
TAAGGGTTATTCGCGGTGTG+AGG + chr1.2:19662048-19662067 MS.gene041029:CDS 50.0%
TACATGGTCAACCACAGGCT+GGG + chr1.2:19661811-19661830 MS.gene041029:CDS 50.0%
TCACGAAACTGACGCTGATC+CGG - chr1.2:19661564-19661583 None:intergenic 50.0%
TCGGAAAATCTCCGCCATTC+TGG - chr1.2:19661340-19661359 None:intergenic 50.0%
TCTACTACGATGAGGAGTCG+AGG + chr1.2:19661690-19661709 MS.gene041029:CDS 50.0%
TGAGGCGGACAACTACAAGA+AGG - chr1.2:19662557-19662576 None:intergenic 50.0%
TGCGACAGGTTGTCAATGTG+AGG + chr1.2:19662424-19662443 MS.gene041029:CDS 50.0%
TGGTTGGGGAGTTAGGTCAT+TGG + chr1.2:19662643-19662662 MS.gene041029:CDS 50.0%
TGTGGCTGAATCGCGATAAG+AGG + chr1.2:19661715-19661734 MS.gene041029:CDS 50.0%
TTACACCGAAGCAAGAGCCT+CGG + chr1.2:19661169-19661188 MS.gene041029:CDS 50.0%
TTACATGGTCAACCACAGGC+TGG + chr1.2:19661810-19661829 MS.gene041029:CDS 50.0%
TTCCGACGCTCATTCACTGA+AGG + chr1.2:19661354-19661373 MS.gene041029:CDS 50.0%
TTCGAACAGGTGGACGGAAT+GGG + chr1.2:19662778-19662797 MS.gene041029:CDS 50.0%
TTTCGAACAGGTGGACGGAA+TGG + chr1.2:19662777-19662796 MS.gene041029:CDS 50.0%
! AGATCTAGGGAGACTGGTTG+GGG + chr1.2:19662629-19662648 MS.gene041029:CDS 50.0%
! CAAAGCGGGCTTCTCTTGAA+AGG + chr1.2:19662506-19662525 MS.gene041029:CDS 50.0%
! GTGGGAATCTTGCTATGGAG+AGG + chr1.2:19662003-19662022 MS.gene041029:CDS 50.0%
!! GGGGTGCTGATGGAAATGTT+TGG - chr1.2:19661128-19661147 None:intergenic 50.0%
AATAATGCCCCTCCTCCTGC+TGG + chr1.2:19661480-19661499 MS.gene041029:CDS 55.0%
ACACGGTTCCGACAATGAGG+CGG - chr1.2:19662572-19662591 None:intergenic 55.0%
ACATTTCCATCAGCACCCCC+TGG + chr1.2:19661129-19661148 MS.gene041029:CDS 55.0%
ACTGACAGGCTCCATACCCT+TGG - chr1.2:19662303-19662322 None:intergenic 55.0%
AGGATTGTTGGCGCGATTCC+TGG + chr1.2:19661735-19661754 MS.gene041029:CDS 55.0%
CGATGAGGAGTCGAGGATTG+TGG + chr1.2:19661697-19661716 MS.gene041029:CDS 55.0%
GAACAACCAACCACCACCAC+CGG + chr1.2:19661297-19661316 MS.gene041029:CDS 55.0%
GGATTGTTGGCGCGATTCCT+GGG + chr1.2:19661736-19661755 MS.gene041029:CDS 55.0%
TACACCGAAGCAAGAGCCTC+GGG + chr1.2:19661170-19661189 MS.gene041029:CDS 55.0%
TCATCCCGAGGCTCTTGCTT+CGG - chr1.2:19661177-19661196 None:intergenic 55.0%
TCGAACAGGTGGACGGAATG+GGG + chr1.2:19662779-19662798 MS.gene041029:CDS 55.0%
TTCACAACCTCACCAGCAGG+AGG - chr1.2:19661495-19661514 None:intergenic 55.0%
! CCGGGGAGTATGAGTTCGAA+TGG + chr1.2:19661846-19661865 MS.gene041029:CDS 55.0%
! TGTGAGGGCTTTTGTGGGGA+AGG + chr1.2:19662440-19662459 MS.gene041029:CDS 55.0%
!! TCTTGCGTTGGTTCATCCCG+AGG - chr1.2:19661189-19661208 None:intergenic 55.0%
AACCTCACCAGCAGGAGGAG+GGG - chr1.2:19661490-19661509 None:intergenic 60.0%
ACAACCTCACCAGCAGGAGG+AGG - chr1.2:19661492-19661511 None:intergenic 60.0%
CAACCTCACCAGCAGGAGGA+GGG - chr1.2:19661491-19661510 None:intergenic 60.0%
CGTTGTCAGGAGGACGAGGA+TGG + chr1.2:19661584-19661603 MS.gene041029:CDS 60.0%
GTGACGTTGTCAGGAGGACG+AGG + chr1.2:19661580-19661599 MS.gene041029:CDS 60.0%
! GGGAGACTGGTTGGGGAGTT+AGG + chr1.2:19662636-19662655 MS.gene041029:CDS 60.0%
!! GGAATACCAGGGGGTGCTGA+TGG - chr1.2:19661138-19661157 None:intergenic 60.0%
!! TTACTCGGGTCATGGTGGGC+AGG + chr1.2:19661941-19661960 MS.gene041029:CDS 60.0%
CGTCGACGCCGCCAGAATGG+CGG + chr1.2:19661326-19661345 MS.gene041029:CDS 70.0%
TGCCCCTCCTCCTGCTGGTG+AGG + chr1.2:19661485-19661504 MS.gene041029:CDS 70.0%
!! CATTCTGGCGGCGTCGACGC+CGG - chr1.2:19661325-19661344 None:intergenic 70.0%
CCAACCACCACCACCGGCGC+CGG + chr1.2:19661303-19661322 MS.gene041029:CDS 75.0%
!! CGGCGTCGACGCCGCCAGAA+TGG + chr1.2:19661323-19661342 MS.gene041029:CDS 75.0%
!!! CCGGCGCCGGTGGTGGTGGT+TGG - chr1.2:19661306-19661325 None:intergenic 80.0%
!!! GACGCCGGCGCCGGTGGTGG+TGG - chr1.2:19661310-19661329 None:intergenic 85.0%
!!! GTCGACGCCGGCGCCGGTGG+TGG - chr1.2:19661313-19661332 None:intergenic 85.0%
!!! GGCGGCGTCGACGCCGGCGC+CGG - chr1.2:19661319-19661338 None:intergenic 90.0%
!!! GGCGTCGACGCCGGCGCCGG+TGG - chr1.2:19661316-19661335 None:intergenic 90.0%


Chromosome Type Strat End Strand Name
chr1.2 gene 19661105 19663087 19661105 ID=MS.gene041029
chr1.2 mRNA 19661105 19663087 19661105 ID=MS.gene041029.t1;Parent=MS.gene041029
chr1.2 exon 19661105 19663087 19661105 ID=MS.gene041029.t1.exon1;Parent=MS.gene041029.t1
chr1.2 CDS 19661105 19663087 19661105 ID=cds.MS.gene041029.t1;Parent=MS.gene041029.t1
Gene Sequence

>MS.gene041029

ATGAATCCTCATAATCCAAACCAAACATTTCCATCAGCACCCCCTGGTATTCCTTTTCCTATGCTTACACCGAAGCAAGAGCCTCGGGATGAACCAACGCAAGAATTTCAATATCCAAACCTAGAAAATTTACCGAACCAAAATCTAAACCTAAATCTAAGTCTGAACCTAGATTTTGTTTCTCAAGGGCTAGAACAACCAACCACCACCACCGGCGCCGGCGTCGACGCCGCCAGAATGGCGGAGATTTTCCGACGCTCATTCACTGAAGGATTACAACGACAGATTCAAAACAATGATGCTGTTGATGAAAATCCAGATGCAAATGCAGATGCAAGAGCTATTGTTCCGGTTTCTGCTGGTGAGAATAATTACAATAATGCCCCTCCTCCTGCTGGTGAGGTTGTGAATGTACGGAAACATAAAGAGCTTGTTCGAATGACGGATGTTGGGTTACCGGATCAGCGTCAGTTTCGTGACGTTGTCAGGAGGACGAGGATGGTTTATGATTCGGTTCGTGTTTTGGCTATGGCTGAAGAAGAAGGGAATTTTAATGTTAGGAGAGTGAGAAGTGATTTGAAAGCTTCTACTACGATGAGGAGTCGAGGATTGTGGCTGAATCGCGATAAGAGGATTGTTGGCGCGATTCCTGGGATTTGTATTGGTGATGTGTTTTTGTATAGGATGGAGTTGTGTGTGGTTGGTTTACATGGTCAACCACAGGCTGGGATTGATTATTTGCCGGGGAGTATGAGTTCGAATGGTGAACCGATTGCTACTAGTGTGATTGTTTCTGGTGGGTATGAGGATGATGTTGATGAAGGTGATGTTATTATTTACTCGGGTCATGGTGGGCAGGATAAGAATTCGAGGCAGGTTTTTCATCAGAAGCTGGAAGGTGGGAATCTTGCTATGGAGAGGAGTATGCATTATGGGATTGAGGTAAGGGTTATTCGCGGTGTGAGGTATGAAGGTACTTCTTCGACTTCGGGTAAGGTTTATGTTTATGATGGTTTGTATAGGATTATTGAATGCTGGTTTGATGTTGGTAAAAGTGGTTTTGGTGTTTTTAAGTTTAAGTTATGGAGGATTGATGGTCAAGCTAAGATGGGTAGTTTGATTTTAAAGGAGGCTTTTTTGCTTAGGAGAGATCCTTTGTGTTATAAACCTATGTGTGTTATATCTCTTGATATTTCCAAGGGTATGGAGCCTGTCAGTATAAGGCTTTTTAATGATATTGATAAATGTAATGATCCGATGTGTTTTGAGTATCTTCCTAGGGCTACTTTTCCACACTTTGTGTTTCATGAAAGTGGGAATGCGACAGGTTGTCAATGTGAGGGCTTTTGTGGGGAAGGATGTTTTTGTTTCATAAAGAATGGAAATGACTTTCCTTACAGTCAAAGCGGGCTTCTCTTGAAAGGAAAGCCGGTCATTTTTGAATGTGGTCCTTCTTGTAGTTGTCCGCCTCATTGTCGGAACCGTGTTACACAAAAAGGGCTTAAACATAGGTTGGAAGTGTTTAGATCTAGGGAGACTGGTTGGGGAGTTAGGTCATTGGACCTTATTCAAGCTGGTGCATTTATATGCGAGTACACTGGGGTTGTTCTGACAAGGGAGCAATCAGAAATTATGACCATGAGTGGTGATTCATTAATATATCCGAATCGTTTTTCGAACAGGTGGACGGAATGGGGTAATTTATCTCTGATTCAAGATGGTTATGTGCCTCCTTCGTATCCATCAATTCCTCCTTTGGATTTTTCTCTTGATGTGTCCAGAATGAGGAATGTGGCTTGCTATATAAGTCATAGCTCAACTCCTAATGTGATGGTTCAGTTTGTTTTGTATGATCATAATAATTTGATGTTCCCTCACATTATGCTGTTTGCGATGGAGAACATCCCTCCATTGAGAGAGTTCAGCCTTGATTATGGTGTAGCTGATGATGAGTTGACTGGCAAGCTCGTAATATGCAACTGA
Protein sequence

>MS.gene041029.t1

MNPHNPNQTFPSAPPGIPFPMLTPKQEPRDEPTQEFQYPNLENLPNQNLNLNLSLNLDFVSQGLEQPTTTTGAGVDAARMAEIFRRSFTEGLQRQIQNNDAVDENPDANADARAIVPVSAGENNYNNAPPPAGEVVNVRKHKELVRMTDVGLPDQRQFRDVVRRTRMVYDSVRVLAMAEEEGNFNVRRVRSDLKASTTMRSRGLWLNRDKRIVGAIPGICIGDVFLYRMELCVVGLHGQPQAGIDYLPGSMSSNGEPIATSVIVSGGYEDDVDEGDVIIYSGHGGQDKNSRQVFHQKLEGGNLAMERSMHYGIEVRVIRGVRYEGTSSTSGKVYVYDGLYRIIECWFDVGKSGFGVFKFKLWRIDGQAKMGSLILKEAFLLRRDPLCYKPMCVISLDISKGMEPVSIRLFNDIDKCNDPMCFEYLPRATFPHFVFHESGNATGCQCEGFCGEGCFCFIKNGNDFPYSQSGLLLKGKPVIFECGPSCSCPPHCRNRVTQKGLKHRLEVFRSRETGWGVRSLDLIQAGAFICEYTGVVLTREQSEIMTMSGDSLIYPNRFSNRWTEWGNLSLIQDGYVPPSYPSIPPLDFSLDVSRMRNVACYISHSSTPNVMVQFVLYDHNNLMFPHIMLFAMENIPPLREFSLDYGVADDELTGKLVICN