AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene041042

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene041042.t1 MTR_5g016610 94.834 271 13 1 1 270 1 271 1.28e-179 495
MS.gene041042.t1 MTR_4g094908 57.059 340 74 9 1 270 1 338 4.73e-105 308
MS.gene041042.t1 MTR_4g127040 44.771 306 104 9 19 266 15 313 1.92e-67 212
MS.gene041042.t1 MTR_1g009613 58.273 139 51 2 138 270 203 340 7.71e-52 172
MS.gene041042.t1 MTR_1g070455 72.897 107 29 0 150 256 245 351 7.09e-44 152
MS.gene041042.t1 MTR_3g108960 54.348 138 62 1 127 264 244 380 4.83e-43 151
MS.gene041042.t1 MTR_0117s0040 67.532 77 25 0 179 255 55 131 3.02e-33 122
MS.gene041042.t1 MTR_2g016770 56.977 86 36 1 173 257 9 94 1.46e-28 108
MS.gene041042.t1 MTR_8g087000 52.688 93 37 1 174 259 45 137 2.43e-28 108
MS.gene041042.t1 MTR_2g083870 51.961 102 33 2 174 264 50 146 2.79e-28 109
MS.gene041042.t1 MTR_7g109600 56.180 89 35 1 171 255 22 110 3.86e-28 108
MS.gene041042.t1 MTR_8g087000 66.667 63 21 0 197 259 76 138 1.38e-27 107
MS.gene041042.t1 MTR_2g032030 48.739 119 56 2 142 255 206 324 1.45e-27 110
MS.gene041042.t1 MTR_2g016770 56.627 83 35 1 176 257 4 86 1.63e-27 105
MS.gene041042.t1 MTR_2g032030 56.842 95 36 2 166 255 230 324 1.63e-27 110
MS.gene041042.t1 MTR_8g028565 60.241 83 28 1 173 255 135 212 2.67e-27 108
MS.gene041042.t1 MTR_7g079040 60.241 83 28 1 173 255 134 211 3.92e-27 107
MS.gene041042.t1 MTR_1g099600 57.647 85 30 2 173 256 164 243 9.69e-25 100
MS.gene041042.t1 MTR_3g056100 49.495 99 41 2 173 263 225 322 5.16e-24 100
MS.gene041042.t1 MTR_3g056100 49.495 99 41 2 173 263 238 335 5.28e-24 100
MS.gene041042.t1 MTR_3g056100 49.495 99 41 2 173 263 382 479 6.91e-24 100
MS.gene041042.t1 MTR_3g056100 49.495 99 41 2 173 263 369 466 7.02e-24 100
MS.gene041042.t1 MTR_5g094430 48.958 96 37 2 173 257 216 310 1.90e-23 99.0
MS.gene041042.t1 MTR_5g094430 48.958 96 37 2 173 257 194 288 1.91e-23 98.6
MS.gene041042.t1 MTR_5g094430 48.958 96 37 2 173 257 328 422 2.64e-23 99.4
MS.gene041042.t1 MTR_2g024350 56.061 66 29 0 191 256 1 66 3.74e-23 94.7
MS.gene041042.t1 MTR_2g024380 51.316 76 37 0 191 266 244 319 1.26e-22 97.1
MS.gene041042.t1 MTR_7g109800 49.398 83 41 1 173 255 120 201 1.90e-21 91.7
MS.gene041042.t1 MTR_7g100510 49.333 75 37 1 194 268 357 430 3.35e-21 92.8
MS.gene041042.t1 MTR_7g100510 51.429 70 31 3 187 255 177 244 9.10e-15 73.9
MS.gene041042.t1 MTR_7g011820 61.905 63 23 1 195 257 407 468 1.46e-20 91.3
MS.gene041042.t1 MTR_7g011820 53.226 62 26 3 195 255 224 283 2.13e-13 70.1
MS.gene041042.t1 MTR_4g013260 40.909 132 67 4 128 259 276 396 1.53e-20 90.9
MS.gene041042.t1 MTR_4g013260 52.632 57 26 1 199 255 185 240 9.79e-14 70.9
MS.gene041042.t1 MTR_8g098945 63.158 57 21 0 199 255 130 186 2.14e-20 88.2
MS.gene041042.t1 MTR_4g094412 33.908 174 88 5 101 257 130 293 2.73e-20 90.1
MS.gene041042.t1 MTR_4g094412 33.908 174 88 5 101 257 139 302 3.27e-20 90.1
MS.gene041042.t1 MTR_5g042920 55.072 69 30 1 195 263 317 384 3.45e-20 89.7
MS.gene041042.t1 MTR_5g042920 46.575 73 37 2 185 257 138 208 4.08e-13 68.9
MS.gene041042.t1 MTR_3g031220 51.899 79 37 1 179 257 346 423 5.22e-20 89.4
MS.gene041042.t1 MTR_3g031220 54.386 57 24 2 199 255 199 253 1.93e-13 70.1
MS.gene041042.t1 MTR_3g009470 47.368 95 39 2 173 257 460 553 1.13e-19 89.0
MS.gene041042.t1 MTR_3g009470 50.877 57 26 2 199 255 281 335 2.14e-11 64.3
MS.gene041042.t1 MTR_4g082580 52.000 75 35 1 195 269 275 348 1.31e-19 87.8
MS.gene041042.t1 MTR_5g074400 51.899 79 37 1 179 257 401 478 1.49e-19 88.2
MS.gene041042.t1 MTR_5g074400 50.877 57 26 2 199 255 244 298 1.75e-12 67.4
MS.gene041042.t1 MTR_4g007060 46.591 88 43 2 172 255 98 185 1.72e-19 85.9
MS.gene041042.t1 MTR_7g080020 45.714 105 45 3 173 266 457 560 1.85e-19 88.2
MS.gene041042.t1 MTR_7g080020 50.000 58 27 2 199 256 281 336 3.18e-11 63.9
MS.gene041042.t1 MTR_4g007060 46.591 88 43 2 172 255 132 219 1.95e-19 86.3
MS.gene041042.t1 MTR_3g106060 55.172 58 26 0 199 256 139 196 2.20e-19 85.9
MS.gene041042.t1 MTR_2g023930 50.000 76 38 0 182 257 289 364 2.39e-19 87.8
MS.gene041042.t1 MTR_1g015140 52.113 71 33 1 185 255 89 158 2.91e-19 82.8
MS.gene041042.t1 MTR_1g086790 45.783 83 44 1 173 255 133 214 4.09e-19 85.5
MS.gene041042.t1 MTR_4g107970 55.224 67 28 1 195 259 173 239 4.48e-19 87.0
MS.gene041042.t1 MTR_3g053330 50.685 73 36 0 185 257 238 310 4.62e-19 86.7
MS.gene041042.t1 MTR_1g013760 52.632 57 27 0 199 255 141 197 5.58e-19 84.7
MS.gene041042.t1 MTR_7g071120 40.458 131 63 4 128 257 266 382 7.84e-19 85.9
MS.gene041042.t1 MTR_7g071120 52.632 57 25 2 199 255 167 221 4.64e-12 66.2
MS.gene041042.t1 MTR_4g107970 55.224 67 28 1 195 259 250 316 9.15e-19 85.9
MS.gene041042.t1 MTR_2g105060 55.000 60 27 0 196 255 92 151 9.67e-19 83.2
MS.gene041042.t1 MTR_4g130900 47.126 87 41 2 169 255 334 415 1.03e-18 85.9
MS.gene041042.t1 MTR_2g105060 55.000 60 27 0 196 255 167 226 1.08e-18 84.3
MS.gene041042.t1 MTR_7g009730 54.412 68 29 1 195 260 214 281 1.20e-18 85.9
MS.gene041042.t1 MTR_7g110720 48.649 74 38 0 184 257 202 275 1.22e-18 85.1
MS.gene041042.t1 MTR_7g080000 51.899 79 37 1 179 257 413 490 1.24e-18 85.9
MS.gene041042.t1 MTR_7g080000 51.724 58 26 2 199 256 235 290 1.36e-11 64.7
MS.gene041042.t1 MTR_7g110720 48.649 74 38 0 184 257 175 248 1.39e-18 85.1
MS.gene041042.t1 MTR_4g094588 47.945 73 37 1 185 257 165 236 1.59e-18 84.0
MS.gene041042.t1 MTR_4g132430 48.684 76 39 0 182 257 111 186 2.04e-18 84.0
MS.gene041042.t1 MTR_5g091390 52.113 71 33 1 185 255 144 213 2.33e-18 83.2
MS.gene041042.t1 MTR_4g132430 48.684 76 39 0 182 257 245 320 2.72e-18 84.3
MS.gene041042.t1 MTR_3g104750 46.154 78 38 2 181 255 84 160 3.17e-18 80.1
MS.gene041042.t1 MTR_2g088000 47.368 76 40 0 182 257 333 408 3.45e-18 84.3
MS.gene041042.t1 MTR_8g069935 52.239 67 32 0 199 265 332 398 5.32e-18 83.6
MS.gene041042.t1 MTR_3g090860 38.938 113 55 4 146 253 87 190 1.46e-17 81.6
MS.gene041042.t1 MTR_8g067635 55.385 65 29 0 191 255 342 406 1.65e-17 82.4
MS.gene041042.t1 MTR_2g045360 55.932 59 26 0 199 257 212 270 1.67e-17 82.0
MS.gene041042.t1 MTR_4g049790 55.000 60 27 0 198 257 312 371 1.68e-17 82.4
MS.gene041042.t1 MTR_8g092010 49.315 73 36 1 185 257 95 166 1.71e-17 78.6
MS.gene041042.t1 MTR_5g043880 41.414 99 56 2 173 270 99 196 1.78e-17 80.5
MS.gene041042.t1 MTR_1g077780 44.706 85 46 1 179 263 43 126 4.32e-17 76.3
MS.gene041042.t1 MTR_8g007270 42.529 87 46 2 173 256 126 211 4.59e-17 78.2
MS.gene041042.t1 MTR_8g092140 50.794 63 30 1 194 256 156 217 6.99e-17 77.8
MS.gene041042.t1 MTR_7g062220 45.570 79 39 2 177 255 106 180 9.61e-17 79.0
MS.gene041042.t1 MTR_3g095080 45.455 77 41 1 182 258 128 203 9.90e-17 77.4
MS.gene041042.t1 MTR_2g033820 48.000 75 38 1 181 255 186 259 1.18e-16 79.3
MS.gene041042.t1 MTR_3g095080 45.455 77 41 1 182 258 152 227 1.34e-16 77.4
MS.gene041042.t1 MTR_8g067650 52.778 72 33 1 185 255 325 396 1.43e-16 79.3
MS.gene041042.t1 MTR_5g097490 47.222 72 37 1 185 256 239 309 3.93e-16 77.8
MS.gene041042.t1 MTR_7g079010 45.000 80 43 1 176 255 119 197 5.37e-16 75.1
MS.gene041042.t1 MTR_1g013790 48.387 62 32 0 196 257 99 160 7.43e-16 75.5
MS.gene041042.t1 MTR_6g053200 43.529 85 45 1 171 255 306 387 8.51e-16 77.4
MS.gene041042.t1 MTR_6g086555 36.607 112 58 3 165 264 162 272 1.45e-15 76.3
MS.gene041042.t1 MTR_4g049760 53.333 60 28 0 198 257 290 349 1.51e-15 76.6
MS.gene041042.t1 MTR_3g095040 47.887 71 36 1 185 255 105 174 2.66e-15 73.2
MS.gene041042.t1 MTR_4g122530 42.697 89 49 2 182 269 192 279 6.61e-15 74.3
MS.gene041042.t1 MTR_7g117200 54.386 57 24 1 199 253 119 175 1.32e-14 72.8
MS.gene041042.t1 MTR_7g028415 44.286 70 38 1 194 263 89 157 1.43e-14 70.1
MS.gene041042.t1 MTR_7g028710 44.286 70 38 1 194 263 89 157 1.43e-14 70.1
MS.gene041042.t1 MTR_8g027860 43.182 88 47 2 169 253 106 193 1.56e-14 72.8
MS.gene041042.t1 MTR_5g067680 42.353 85 45 3 172 253 176 259 2.31e-14 72.4
MS.gene041042.t1 MTR_8g099350 41.837 98 48 4 173 266 106 198 2.96e-14 72.0
MS.gene041042.t1 MTR_1g078260 50.649 77 32 3 181 256 234 305 6.98e-14 71.6
MS.gene041042.t1 MTR_3g031220 54.386 57 24 2 199 255 199 253 1.24e-13 70.5
MS.gene041042.t1 MTR_8g087000 66.667 39 13 0 218 256 35 73 5.52e-13 66.2
MS.gene041042.t1 MTR_5g018380 52.632 57 24 2 199 255 124 177 1.58e-12 64.7
MS.gene041042.t1 MTR_2g075610 43.056 72 39 1 199 268 30 101 6.00e-12 63.5
MS.gene041042.t1 MTR_5g067700 34.783 115 73 1 141 253 49 163 1.05e-11 63.5
MS.gene041042.t1 MTR_8g096730 42.623 61 34 1 195 255 67 126 1.58e-11 61.2
MS.gene041042.t1 MTR_3g009470 50.877 57 26 2 199 255 281 335 1.85e-11 64.3
MS.gene041042.t1 MTR_2g075750 41.333 75 35 2 199 264 29 103 4.99e-11 60.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene041042.t1 AT2G23320 47.432 331 99 12 1 270 1 317 7.14e-78 239
MS.gene041042.t1 AT4G24240 41.573 356 97 9 1 259 1 342 5.64e-74 230
MS.gene041042.t1 AT4G31550 43.252 326 107 11 1 263 1 311 1.36e-71 223
MS.gene041042.t1 AT4G31550 43.558 326 105 12 1 263 1 310 8.77e-71 221
MS.gene041042.t1 AT2G24570 61.240 129 46 1 137 261 178 306 9.51e-53 174
MS.gene041042.t1 AT3G04670 78.571 98 20 1 159 256 224 320 1.99e-51 171
MS.gene041042.t1 AT5G28650 61.314 137 46 3 122 256 189 320 5.75e-51 170
MS.gene041042.t1 AT2G30590 71.296 108 28 2 150 255 264 370 1.20e-50 171
MS.gene041042.t1 AT2G23320 41.971 274 89 11 1 218 1 260 1.08e-45 154
MS.gene041042.t1 AT4G24240 36.190 315 90 9 1 218 1 301 4.31e-44 151
MS.gene041042.t1 AT4G31550 39.146 281 92 12 1 218 1 265 1.07e-41 144
MS.gene041042.t1 AT1G29280 51.000 100 42 2 167 260 38 136 5.30e-29 111
MS.gene041042.t1 AT4G01250 51.402 107 44 2 149 255 87 185 2.67e-28 110
MS.gene041042.t1 AT3G58710 53.922 102 31 2 174 264 40 136 3.68e-28 109
MS.gene041042.t1 AT3G58710 50.485 103 40 1 173 264 35 137 6.81e-28 108
MS.gene041042.t1 AT2G34830 57.471 87 32 2 174 255 186 272 1.70e-27 110
MS.gene041042.t1 AT2G34830 57.471 87 32 2 174 255 195 281 1.94e-27 110
MS.gene041042.t1 AT1G30650 57.471 87 32 2 174 255 188 274 2.25e-26 107
MS.gene041042.t1 AT3G04670 75.000 64 15 1 159 222 224 286 1.14e-25 102
MS.gene041042.t1 AT5G52830 53.012 83 35 1 173 255 144 222 1.83e-23 98.2
MS.gene041042.t1 AT5G26170 56.944 72 30 1 185 256 100 170 2.79e-23 93.6
MS.gene041042.t1 AT4G23550 54.545 77 31 1 181 257 127 199 2.40e-22 94.4
MS.gene041042.t1 AT2G04880 49.412 85 39 2 185 266 270 353 6.38e-22 94.7
MS.gene041042.t1 AT2G04880 49.412 85 39 2 185 266 294 377 6.87e-22 95.1
MS.gene041042.t1 AT4G26640 53.947 76 34 1 182 257 189 263 9.73e-22 93.6
MS.gene041042.t1 AT4G26640 53.947 76 34 1 182 257 189 263 9.73e-22 93.6
MS.gene041042.t1 AT4G26640 53.947 76 34 1 182 257 189 263 9.73e-22 93.6
MS.gene041042.t1 AT4G26640 53.947 76 34 1 182 257 189 263 9.73e-22 93.6
MS.gene041042.t1 AT4G26640 53.947 76 34 1 182 257 365 439 1.68e-21 94.0
MS.gene041042.t1 AT4G26640 47.368 95 39 2 173 257 306 399 1.68e-21 94.0
MS.gene041042.t1 AT4G26640 53.947 76 34 1 182 257 293 367 1.74e-21 94.0
MS.gene041042.t1 AT1G13960 54.795 73 32 1 185 257 243 314 3.56e-21 92.0
MS.gene041042.t1 AT1G13960 54.839 62 25 3 195 255 72 131 1.64e-14 72.8
MS.gene041042.t1 AT2G38470 52.632 76 35 1 182 257 346 420 4.43e-21 92.8
MS.gene041042.t1 AT2G38470 52.632 57 25 2 199 255 185 239 4.95e-13 68.9
MS.gene041042.t1 AT1G13960 54.795 73 32 1 185 257 396 467 8.23e-21 92.0
MS.gene041042.t1 AT1G13960 54.839 62 25 3 195 255 225 284 1.69e-14 73.6
MS.gene041042.t1 AT5G07100 53.425 73 33 1 185 257 128 199 8.35e-21 88.2
MS.gene041042.t1 AT5G07100 49.123 57 28 1 199 255 25 80 1.51e-11 62.8
MS.gene041042.t1 AT5G07100 53.425 73 33 1 185 257 128 199 8.35e-21 88.2
MS.gene041042.t1 AT5G07100 49.123 57 28 1 199 255 25 80 1.51e-11 62.8
MS.gene041042.t1 AT5G07100 53.425 73 33 1 185 257 128 199 8.35e-21 88.2
MS.gene041042.t1 AT5G07100 49.123 57 28 1 199 255 25 80 1.51e-11 62.8
MS.gene041042.t1 AT5G07100 53.425 73 33 1 185 257 128 199 8.35e-21 88.2
MS.gene041042.t1 AT5G07100 49.123 57 28 1 199 255 25 80 1.51e-11 62.8
MS.gene041042.t1 AT5G64810 34.239 184 101 6 93 267 7 179 1.81e-20 86.7
MS.gene041042.t1 AT1G29860 51.316 76 36 1 182 257 120 194 1.92e-20 88.6
MS.gene041042.t1 AT4G18170 44.706 85 46 1 173 257 147 230 2.20e-20 89.0
MS.gene041042.t1 AT5G07100 53.425 73 33 1 185 257 221 292 4.00e-20 88.2
MS.gene041042.t1 AT5G07100 49.123 57 28 1 199 255 118 173 2.49e-11 63.2
MS.gene041042.t1 AT5G49520 49.367 79 39 1 182 260 205 282 4.47e-20 89.4
MS.gene041042.t1 AT5G45050 50.602 83 37 1 173 255 1131 1209 4.75e-20 90.1
MS.gene041042.t1 AT5G45050 50.602 83 37 1 173 255 1159 1237 4.85e-20 90.1
MS.gene041042.t1 AT5G45050 50.602 83 37 1 173 255 1020 1098 5.09e-20 90.1
MS.gene041042.t1 AT1G62300 50.000 76 38 0 182 257 296 371 1.40e-19 88.6
MS.gene041042.t1 AT2G03340 52.055 73 34 1 185 257 402 473 1.44e-19 88.2
MS.gene041042.t1 AT2G03340 51.389 72 32 3 194 264 245 314 7.91e-16 77.4
MS.gene041042.t1 AT4G04450 48.684 76 39 0 182 257 182 257 1.84e-19 87.8
MS.gene041042.t1 AT5G56270 46.875 96 39 2 173 257 451 545 2.27e-19 87.8
MS.gene041042.t1 AT4G22070 50.000 76 38 0 182 257 281 356 2.36e-19 87.8
MS.gene041042.t1 AT4G22070 50.000 76 38 0 182 257 281 356 2.36e-19 87.8
MS.gene041042.t1 AT4G22070 50.000 76 38 0 182 257 281 356 2.36e-19 87.8
MS.gene041042.t1 AT4G22070 50.000 76 38 0 182 257 281 356 2.36e-19 87.8
MS.gene041042.t1 AT5G15130 56.716 67 27 1 195 259 180 246 2.69e-19 87.4
MS.gene041042.t1 AT5G15130 56.716 67 27 1 195 259 222 288 3.43e-19 87.4
MS.gene041042.t1 AT4G04450 48.684 76 39 0 182 257 276 351 3.83e-19 87.0
MS.gene041042.t1 AT2G47260 46.988 83 43 1 173 255 149 230 3.91e-19 85.9
MS.gene041042.t1 AT4G30935 54.098 61 27 1 199 259 332 391 4.33e-19 86.7
MS.gene041042.t1 AT1G68150 61.818 55 21 0 203 257 240 294 5.37e-19 85.9
MS.gene041042.t1 AT4G39410 46.512 86 42 2 174 256 196 280 1.18e-18 84.0
MS.gene041042.t1 AT4G31800 54.386 57 26 0 199 255 112 168 1.36e-18 82.8
MS.gene041042.t1 AT4G31800 54.386 57 26 0 199 255 177 233 2.00e-18 83.6
MS.gene041042.t1 AT4G26440 39.098 133 66 3 123 255 311 428 3.68e-18 84.3
MS.gene041042.t1 AT4G26440 51.724 58 26 2 199 256 179 234 2.63e-11 63.9
MS.gene041042.t1 AT1G80840 49.254 67 33 1 199 264 147 213 4.87e-18 82.4
MS.gene041042.t1 AT3G62340 44.706 85 46 1 176 260 96 179 5.49e-18 82.0
MS.gene041042.t1 AT2G37260 56.250 64 27 1 194 257 263 325 5.62e-18 82.8
MS.gene041042.t1 AT2G37260 55.172 58 24 2 199 256 84 139 8.27e-13 67.8
MS.gene041042.t1 AT2G37260 56.250 64 27 1 194 257 265 327 5.72e-18 82.8
MS.gene041042.t1 AT2G37260 55.172 58 24 2 199 256 86 141 8.11e-13 67.8
MS.gene041042.t1 AT3G01080 56.250 64 27 1 194 257 302 364 6.27e-18 83.2
MS.gene041042.t1 AT3G01080 53.226 62 26 3 195 255 163 222 3.25e-13 69.3
MS.gene041042.t1 AT3G01080 56.250 64 27 1 194 257 340 402 6.39e-18 83.2
MS.gene041042.t1 AT3G01080 53.226 62 26 3 195 255 201 260 2.44e-13 69.7
MS.gene041042.t1 AT2G37260 59.322 59 23 1 199 257 350 407 6.87e-18 83.2
MS.gene041042.t1 AT2G37260 55.172 58 24 2 199 256 166 221 6.69e-13 68.6
MS.gene041042.t1 AT4G01720 48.684 76 39 0 182 257 223 298 8.67e-18 83.2
MS.gene041042.t1 AT1G69310 46.341 82 43 1 174 255 123 203 9.83e-18 81.3
MS.gene041042.t1 AT1G69310 46.341 82 43 1 174 255 123 203 9.83e-18 81.3
MS.gene041042.t1 AT1G69310 46.341 82 43 1 174 255 123 203 9.83e-18 81.3
MS.gene041042.t1 AT1G55600 48.052 77 36 2 182 255 288 363 1.43e-17 82.4
MS.gene041042.t1 AT2G40740 44.330 97 50 3 161 253 134 230 1.56e-17 80.9
MS.gene041042.t1 AT1G64000 42.857 84 47 1 172 255 88 170 1.93e-17 78.6
MS.gene041042.t1 AT2G40740 44.330 97 50 3 161 253 143 239 1.95e-17 80.5
MS.gene041042.t1 AT2G25000 53.448 58 27 0 199 256 104 161 2.09e-17 79.3
MS.gene041042.t1 AT2G25000 53.448 58 27 0 199 256 104 161 2.09e-17 79.3
MS.gene041042.t1 AT5G46350 46.575 73 38 1 185 257 170 241 2.89e-17 80.5
MS.gene041042.t1 AT2G25000 53.448 58 27 0 199 256 126 183 4.95e-17 78.6
MS.gene041042.t1 AT2G25000 53.448 58 27 0 199 256 147 204 6.48e-17 79.0
MS.gene041042.t1 AT2G44745 42.857 84 44 2 175 255 119 201 1.04e-16 77.4
MS.gene041042.t1 AT5G41570 40.860 93 53 2 176 267 76 167 1.14e-16 76.3
MS.gene041042.t1 AT3G01970 44.595 74 40 1 185 258 52 124 3.08e-16 74.3
MS.gene041042.t1 AT1G18860 46.250 80 40 2 181 257 219 298 4.54e-16 78.2
MS.gene041042.t1 AT2G30250 45.205 73 39 1 185 257 315 386 8.43e-16 77.0
MS.gene041042.t1 AT2G21900 56.140 57 24 1 199 255 110 165 1.56e-15 73.6
MS.gene041042.t1 AT5G45260 46.835 79 34 2 179 255 1195 1267 1.76e-15 76.6
MS.gene041042.t1 AT5G43290 56.140 57 24 1 199 255 115 170 9.54e-15 72.8
MS.gene041042.t1 AT5G13080 43.836 73 40 1 185 257 54 125 1.15e-14 70.1
MS.gene041042.t1 AT2G46130 50.000 62 30 1 194 255 26 86 1.55e-14 68.6
MS.gene041042.t1 AT4G11070 39.316 117 65 3 140 253 85 198 2.05e-14 72.4
MS.gene041042.t1 AT4G11070 39.316 117 65 3 140 253 53 166 2.09e-14 72.0
MS.gene041042.t1 AT4G23810 37.984 129 71 4 145 265 100 227 4.77e-14 71.2
MS.gene041042.t1 AT1G69810 51.724 58 27 1 203 259 208 265 7.53e-14 71.2
MS.gene041042.t1 AT1G69810 51.724 58 27 1 203 259 150 207 1.07e-13 70.5
MS.gene041042.t1 AT3G01080 53.226 62 26 3 195 255 201 260 1.59e-13 69.7
MS.gene041042.t1 AT1G69310 43.902 82 41 2 174 255 123 199 2.34e-13 68.9
MS.gene041042.t1 AT5G24110 42.169 83 45 2 173 253 89 170 6.47e-12 65.1
MS.gene041042.t1 AT2G46400 40.476 84 46 2 174 253 78 161 8.00e-12 64.7
MS.gene041042.t1 AT3G56400 29.936 157 100 5 106 253 22 177 1.17e-11 64.3
MS.gene041042.t1 AT1G66560 49.153 59 28 1 197 253 102 160 1.51e-11 63.2
MS.gene041042.t1 AT4G12020 50.877 57 26 2 199 255 469 523 2.55e-11 64.3
MS.gene041042.t1 AT4G12020 50.877 57 26 2 199 255 469 523 2.55e-11 64.3
MS.gene041042.t1 AT4G12020 50.877 57 26 2 199 255 469 523 2.68e-11 64.3
MS.gene041042.t1 AT4G12020 50.877 57 26 2 199 255 469 523 2.68e-11 64.3
MS.gene041042.t1 AT4G12020 50.877 57 26 2 199 255 469 523 2.75e-11 64.3
MS.gene041042.t1 AT4G12020 50.877 57 26 2 199 255 469 523 2.87e-11 64.3
MS.gene041042.t1 AT4G12020 50.877 57 26 2 199 255 469 523 2.92e-11 64.3
MS.gene041042.t1 AT4G12020 50.877 57 26 2 199 255 469 523 3.09e-11 63.9
MS.gene041042.t1 AT4G12020 50.877 57 26 2 199 255 469 523 3.21e-11 63.9
MS.gene041042.t1 AT4G12020 50.877 57 26 2 199 255 402 456 3.29e-11 63.9
MS.gene041042.t1 AT4G12020 50.877 57 26 2 199 255 469 523 3.44e-11 63.9
MS.gene041042.t1 AT1G80590 47.761 67 29 2 193 253 76 142 5.08e-11 61.6
MS.gene041042.t1 AT1G66550 47.458 59 29 1 197 253 102 160 6.18e-11 61.6
MS.gene041042.t1 AT5G22570 46.479 71 32 2 196 260 108 178 6.28e-11 62.0
MS.gene041042.t1 AT1G66550 47.458 59 29 1 197 253 107 165 6.80e-11 61.6

Find 47 sgRNAs with CRISPR-Local

Find 83 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TACAAGTGCAGCAGTGTTAA+AGG 0.223332 5.1:+8930690 MS.gene041042:CDS
ATTTCACTTCTGAATCAAAA+TGG 0.248058 5.1:+8929515 MS.gene041042:CDS
GGATGAGGTGATCCTTTAAT+AGG 0.293488 5.1:-8930018 None:intergenic
AAGTGTAGCTCTGAGAATTT+TGG 0.302152 5.1:+8929755 MS.gene041042:CDS
TTCCAACTGATGAATATTCT+TGG 0.308006 5.1:+8929977 MS.gene041042:CDS
TCTCAGGTTTCTTCTTCGTT+TGG 0.320070 5.1:+8929698 MS.gene041042:CDS
GCAGTTCAAGAAGCTGCTTC+TGG 0.326064 5.1:+8929365 MS.gene041042:CDS
TATGGTCAGAAACCTATTAA+AGG 0.332994 5.1:+8930006 MS.gene041042:CDS
ACATCATTGTTGGGGATTAG+AGG 0.351620 5.1:-8929641 None:intergenic
CTTCTTGAACTGCATTCTCT+TGG 0.364489 5.1:-8929355 None:intergenic
TTATCAATAACATCATTGTT+GGG 0.369596 5.1:-8929650 None:intergenic
CCACAATCACTCCCTCTCTA+TGG 0.372520 5.1:+8930785 MS.gene041042:CDS
CTTATCAATAACATCATTGT+TGG 0.377214 5.1:-8929651 None:intergenic
GAATATTCTTGGAGGAAGTA+TGG 0.385581 5.1:+8929988 MS.gene041042:CDS
TGAGGTTGAAAAGAGTGGTT+AGG 0.422019 5.1:+8929923 MS.gene041042:CDS
AAAACATGTAGAAAGAGCTT+TGG 0.435280 5.1:+8930725 MS.gene041042:CDS
AATCAAAATGGAACAAGAAC+TGG 0.440484 5.1:+8929527 MS.gene041042:CDS
TAAGTAACTACCAACATAGA+TGG 0.441381 5.1:-8930753 None:intergenic
CTCCAAGAATATTCATCAGT+TGG 0.460948 5.1:-8929979 None:intergenic
TATGGCCGTTGAACTAATGA+TGG 0.474638 5.1:+8929301 None:intergenic
GAATACAAACCCTAATTCCA+TGG 0.508067 5.1:+8929445 MS.gene041042:CDS
TGAATTCAATTCAGTTCAAG+AGG 0.508819 5.1:-8930835 None:intergenic
ATGTTGGTAGTTACTTATGA+AGG 0.517787 5.1:+8930759 MS.gene041042:CDS
CTAGTTTCAGAAGTGGAAGT+AGG 0.526285 5.1:-8929584 None:intergenic
GAAAAGAGTGGTTAGGGTAG+CGG 0.527347 5.1:+8929930 MS.gene041042:CDS
TCAGAAGTGGAAGTAGGAGA+AGG 0.528280 5.1:-8929578 None:intergenic
GAGGTTGAAAAGAGTGGTTA+GGG 0.534113 5.1:+8929924 MS.gene041042:CDS
TATCAATAACATCATTGTTG+GGG 0.534993 5.1:-8929649 None:intergenic
CAACTGATGAATATTCTTGG+AGG 0.535323 5.1:+8929980 MS.gene041042:CDS
GTGTCCCATCATTAGTTCAA+CGG 0.535706 5.1:-8929306 None:intergenic
CCATAGAGAGGGAGTGATTG+TGG 0.545149 5.1:-8930785 None:intergenic
ACTGTCATTGTTCAAAGAAG+AGG 0.551193 5.1:+8929807 MS.gene041042:CDS
TTTGGATGATCCATCTATGT+TGG 0.552858 5.1:+8930743 MS.gene041042:CDS
AGCGGCAATAAGCTTGAAGA+TGG 0.558574 5.1:+8929948 MS.gene041042:CDS
TGAAACAGCAACATCAGCTA+CGG 0.565102 5.1:-8929477 None:intergenic
ATAATCAAGTACCTTGGATG+AGG 0.580943 5.1:-8930033 None:intergenic
GTGGAAGTAGGAGAAGGTAA+AGG 0.586033 5.1:-8929572 None:intergenic
GTAGACTCTAGTTTCAGAAG+TGG 0.596356 5.1:-8929591 None:intergenic
TTAAAGGATCACCTCATCCA+AGG 0.601665 5.1:+8930022 MS.gene041042:CDS
ATTAGCTTCAACCATAGAGA+GGG 0.604376 5.1:-8930796 None:intergenic
AGAGGAGGAATCTGCTGCAA+CGG 0.605875 5.1:-8929623 None:intergenic
TATTAGCTTCAACCATAGAG+AGG 0.607872 5.1:-8930797 None:intergenic
TCATTGTTGGGGATTAGAGG+AGG 0.627905 5.1:-8929638 None:intergenic
ATGGCCGTTGAACTAATGAT+GGG 0.631577 5.1:+8929302 MS.gene041042:CDS
TCTGCTGCAACGGAGTAGCA+TGG 0.640412 5.1:-8929613 None:intergenic
AAACGAAGAAGAAACCTGAG+AGG 0.690900 5.1:-8929696 None:intergenic
TCTTCTTTGAACAATGACAG+TGG 0.712784 5.1:-8929805 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATAAATTACTTAAGTTTTA+AGG - chr5.1:8930376-8930395 None:intergenic 10.0%
!!! TTAGTGATTTTTTTAATTAT+TGG + chr5.1:8930510-8930529 MS.gene041042:intron 10.0%
!! ACTCAATTAAAATATTACTA+AGG - chr5.1:8930072-8930091 None:intergenic 15.0%
!!! AACACATATAAGAAATTTTT+TGG - chr5.1:8930113-8930132 None:intergenic 15.0%
!! ATCTTAAAAGTAGAAGTTTA+TGG - chr5.1:8930462-8930481 None:intergenic 20.0%
!! ATTTAGTACTCAATCTTAAT+AGG - chr5.1:8930550-8930569 None:intergenic 20.0%
!! GGAAATGATTCAAAATTAAA+CGG - chr5.1:8930155-8930174 None:intergenic 20.0%
!! TTAATTACTGTAGAAAAATG+AGG + chr5.1:8929905-8929924 MS.gene041042:intron 20.0%
!! TTATCAATAACATCATTGTT+GGG - chr5.1:8929653-8929672 None:intergenic 20.0%
!!! TTCAAACAATTTTCAAATAC+TGG - chr5.1:8930229-8930248 None:intergenic 20.0%
!!! TTTTTTTAATTATTGGTCCA+CGG + chr5.1:8930517-8930536 MS.gene041042:intron 20.0%
! ACTATGTGCATAAAGAAAAA+GGG - chr5.1:8930176-8930195 None:intergenic 25.0%
! ATACTAATAATCAAGTACCT+TGG - chr5.1:8930042-8930061 None:intergenic 25.0%
! ATTTCACTTCTGAATCAAAA+TGG + chr5.1:8929515-8929534 MS.gene041042:CDS 25.0%
! CTTATCAATAACATCATTGT+TGG - chr5.1:8929654-8929673 None:intergenic 25.0%
! TATCAATAACATCATTGTTG+GGG - chr5.1:8929652-8929671 None:intergenic 25.0%
! TGGTAAATTACAAATCAAGA+TGG - chr5.1:8930202-8930221 None:intergenic 25.0%
!! TTTTATAGTCCATGGAATTA+GGG - chr5.1:8929457-8929476 None:intergenic 25.0%
!!! AATTTTCAAATACTGGCTTT+TGG - chr5.1:8930222-8930241 None:intergenic 25.0%
!!! AATTTTGGTAATGAAAAGTG+TGG + chr5.1:8929770-8929789 MS.gene041042:CDS 25.0%
AAAAATGAGGTTGAAAAGAG+TGG + chr5.1:8929918-8929937 MS.gene041042:CDS 30.0%
AAAACATGTAGAAAGAGCTT+TGG + chr5.1:8930725-8930744 MS.gene041042:CDS 30.0%
AATCAAAATGGAACAAGAAC+TGG + chr5.1:8929527-8929546 MS.gene041042:CDS 30.0%
CACTATGTGCATAAAGAAAA+AGG - chr5.1:8930177-8930196 None:intergenic 30.0%
TAAGATACGCAAATAACGTT+AGG + chr5.1:8930476-8930495 MS.gene041042:intron 30.0%
TAAGTAACTACCAACATAGA+TGG - chr5.1:8930756-8930775 None:intergenic 30.0%
TAGTACTCAATCTTAATAGG+TGG - chr5.1:8930547-8930566 None:intergenic 30.0%
TATGGTCAGAAACCTATTAA+AGG + chr5.1:8930006-8930025 MS.gene041042:CDS 30.0%
TTCCAACTGATGAATATTCT+TGG + chr5.1:8929977-8929996 MS.gene041042:CDS 30.0%
TTGAGTTATCACTTACTGTA+AGG + chr5.1:8930086-8930105 MS.gene041042:intron 30.0%
TTGTGTTTGTCGTTAGTATA+AGG - chr5.1:8930302-8930321 None:intergenic 30.0%
! CTTTTTCTTTATGCACATAG+TGG + chr5.1:8930175-8930194 MS.gene041042:intron 30.0%
! GTTTTATAGTCCATGGAATT+AGG - chr5.1:8929458-8929477 None:intergenic 30.0%
! TGATTTTTCTTATTCCTCTC+AGG + chr5.1:8929682-8929701 MS.gene041042:CDS 30.0%
!! ATGTTGGTAGTTACTTATGA+AGG + chr5.1:8930759-8930778 MS.gene041042:CDS 30.0%
ACGATGATTATTACTACTGC+AGG + chr5.1:8930661-8930680 MS.gene041042:intron 35.0%
ACTGTCATTGTTCAAAGAAG+AGG + chr5.1:8929807-8929826 MS.gene041042:CDS 35.0%
ATAATCAAGTACCTTGGATG+AGG - chr5.1:8930036-8930055 None:intergenic 35.0%
ATCCAAGACAATGACCTAAT+TGG - chr5.1:8930423-8930442 None:intergenic 35.0%
CAACTGATGAATATTCTTGG+AGG + chr5.1:8929980-8929999 MS.gene041042:CDS 35.0%
CGATGATTATTACTACTGCA+GGG + chr5.1:8930662-8930681 MS.gene041042:intron 35.0%
CTCCAAGAATATTCATCAGT+TGG - chr5.1:8929982-8930001 None:intergenic 35.0%
CTCGAAGAAAATGTCTATTG+TGG - chr5.1:8930259-8930278 None:intergenic 35.0%
GAATACAAACCCTAATTCCA+TGG + chr5.1:8929445-8929464 MS.gene041042:CDS 35.0%
GAATATTCTTGGAGGAAGTA+TGG + chr5.1:8929988-8930007 MS.gene041042:CDS 35.0%
GATGATTATTACTACTGCAG+GGG + chr5.1:8930663-8930682 MS.gene041042:intron 35.0%
TCTTCTTTGAACAATGACAG+TGG - chr5.1:8929808-8929827 None:intergenic 35.0%
TTTGGATGATCCATCTATGT+TGG + chr5.1:8930743-8930762 MS.gene041042:CDS 35.0%
! ATTAGCTTCAACCATAGAGA+GGG - chr5.1:8930799-8930818 None:intergenic 35.0%
! TATTAGCTTCAACCATAGAG+AGG - chr5.1:8930800-8930819 None:intergenic 35.0%
!! TTTTAATTATTGGTCCACGG+TGG + chr5.1:8930520-8930539 MS.gene041042:intron 35.0%
!!! AAGTGTAGCTCTGAGAATTT+TGG + chr5.1:8929755-8929774 MS.gene041042:CDS 35.0%
AAACGAAGAAGAAACCTGAG+AGG - chr5.1:8929699-8929718 None:intergenic 40.0%
ACATCATTGTTGGGGATTAG+AGG - chr5.1:8929644-8929663 None:intergenic 40.0%
ATGGCCGTTGAACTAATGAT+GGG + chr5.1:8929302-8929321 MS.gene041042:CDS 40.0%
CACCAATTAGGTCATTGTCT+TGG + chr5.1:8930418-8930437 MS.gene041042:intron 40.0%
CTAGTTTCAGAAGTGGAAGT+AGG - chr5.1:8929587-8929606 None:intergenic 40.0%
CTTCTTGAACTGCATTCTCT+TGG - chr5.1:8929358-8929377 None:intergenic 40.0%
GACAATGACCTAATTGGTGT+CGG - chr5.1:8930417-8930436 None:intergenic 40.0%
GAGGTTGAAAAGAGTGGTTA+GGG + chr5.1:8929924-8929943 MS.gene041042:CDS 40.0%
GGATGAGGTGATCCTTTAAT+AGG - chr5.1:8930021-8930040 None:intergenic 40.0%
GTGTCCCATCATTAGTTCAA+CGG - chr5.1:8929309-8929328 None:intergenic 40.0%
TACAAGTGCAGCAGTGTTAA+AGG + chr5.1:8930690-8930709 MS.gene041042:CDS 40.0%
TCTCAGGTTTCTTCTTCGTT+TGG + chr5.1:8929698-8929717 MS.gene041042:CDS 40.0%
TGAAACAGCAACATCAGCTA+CGG - chr5.1:8929480-8929499 None:intergenic 40.0%
TGAGGTTGAAAAGAGTGGTT+AGG + chr5.1:8929923-8929942 MS.gene041042:CDS 40.0%
TTAAAGGATCACCTCATCCA+AGG + chr5.1:8930022-8930041 MS.gene041042:CDS 40.0%
! CTTTCTACATGTTTTCGTGC+TGG - chr5.1:8930720-8930739 None:intergenic 40.0%
! GTAGACTCTAGTTTCAGAAG+TGG - chr5.1:8929594-8929613 None:intergenic 40.0%
!! AGCTACGGTTTTATAGTCCA+TGG - chr5.1:8929465-8929484 None:intergenic 40.0%
AGCGGCAATAAGCTTGAAGA+TGG + chr5.1:8929948-8929967 MS.gene041042:CDS 45.0%
GAAAAGAGTGGTTAGGGTAG+CGG + chr5.1:8929930-8929949 MS.gene041042:CDS 45.0%
GTGGAAGTAGGAGAAGGTAA+AGG - chr5.1:8929575-8929594 None:intergenic 45.0%
TCAGAAGTGGAAGTAGGAGA+AGG - chr5.1:8929581-8929600 None:intergenic 45.0%
TCATTGTTGGGGATTAGAGG+AGG - chr5.1:8929641-8929660 None:intergenic 45.0%
!!! GTAATTTATTTTTATTATTT+TGG + chr5.1:8930386-8930405 MS.gene041042:intron 5.0%
AGAGGAGGAATCTGCTGCAA+CGG - chr5.1:8929626-8929645 None:intergenic 50.0%
CCACAATCACTCCCTCTCTA+TGG + chr5.1:8930785-8930804 MS.gene041042:CDS 50.0%
CCATAGAGAGGGAGTGATTG+TGG - chr5.1:8930788-8930807 None:intergenic 50.0%
GCAGTTCAAGAAGCTGCTTC+TGG + chr5.1:8929365-8929384 MS.gene041042:CDS 50.0%
TCTTAATAGGTGGTCCACCG+TGG - chr5.1:8930537-8930556 None:intergenic 50.0%
TGGTCGAACCGACACCAATT+AGG + chr5.1:8930406-8930425 MS.gene041042:intron 50.0%
TCTGCTGCAACGGAGTAGCA+TGG - chr5.1:8929616-8929635 None:intergenic 55.0%


Chromosome Type Strat End Strand Name
chr5.1 gene 8929302 8930842 8929302 ID=MS.gene041042
chr5.1 mRNA 8929302 8930842 8929302 ID=MS.gene041042.t1;Parent=MS.gene041042
chr5.1 exon 8929302 8929828 8929302 ID=MS.gene041042.t1.exon1;Parent=MS.gene041042.t1
chr5.1 CDS 8929302 8929828 8929302 ID=cds.MS.gene041042.t1;Parent=MS.gene041042.t1
chr5.1 exon 8929918 8930043 8929918 ID=MS.gene041042.t1.exon2;Parent=MS.gene041042.t1
chr5.1 CDS 8929918 8930043 8929918 ID=cds.MS.gene041042.t1;Parent=MS.gene041042.t1
chr5.1 exon 8930683 8930842 8930683 ID=MS.gene041042.t1.exon3;Parent=MS.gene041042.t1
chr5.1 CDS 8930683 8930842 8930683 ID=cds.MS.gene041042.t1;Parent=MS.gene041042.t1
Gene Sequence

>MS.gene041042

ATGGCCGTTGAACTAATGATGGGACACAAAAACAACAATTTAACAAACAAATTCCAAGAGAATGCAGTTCAAGAAGCTGCTTCTGGTTTACAAAGCATAGAAAAACTCATTAAATTACTATCATCATCACAAGCATGTTCTTCGAATACAAACCCTAATTCCATGGACTATAAAACCGTAGCTGATGTTGCTGTTTCAAAGTTTAAGAATGTTATTTCACTTCTGAATCAAAATGGAACAAGAACTGGTCATGCACGTTTCAGAAGAGCACCTTTACCTTCTCCTACTTCCACTTCTGAAACTAGAGTCTACCATGCTACTCCGTTGCAGCAGATTCCTCCTCTAATCCCCAACAATGATGTTATTGATAAGAATATCATTGATTTTTCTTATTCCTCTCAGGTTTCTTCTTCGTTTGGAAAGTCTTGTGTTTCTTCATGTTCGTTGAAGAGAAAGTGTAGCTCTGAGAATTTTGGTAATGAAAAGTGTGGTAGTTCATCTAGCCACTGTCATTGTTCAAAGAAGAGGTATATATGTAGCTCTCAAAATTCGTTTTATTTTTGTTCTTCTTTTTTGAGTTAATTACTTTATGTTAATTTGTTGTTAATTACTGTAGAAAAATGAGGTTGAAAAGAGTGGTTAGGGTAGCGGCAATAAGCTTGAAGATGGCTGATATTCCAACTGATGAATATTCTTGGAGGAAGTATGGTCAGAAACCTATTAAAGGATCACCTCATCCAAGGTACTTGATTATTAGTATTAAGCAACCTTAGTAATATTTTAATTGAGTTATCACTTACTGTAAGGACCAAAAAATTTCTTATATGTGTTACACTAGATTGCTCACTGACCGTTTAATTTTGAATCATTTCCCTTTTTCTTTATGCACATAGTGGACCATCTTGATTTGTAATTTACCAAAAGCCAGTATTTGAAAATTGTTTGAAACTTAAACCACAATAGACATTTTCTTCGAGAAGTAGAAGTTCACGATTGTCCTTATACTAACGACAAACACAAATGACTTGATTGATGCAAGTTCGTCAAAAACAAGAGAAATGAATTTATGTACCTTAAAACTTAAGTAATTTATTTTTATTATTTTGGTCGAACCGACACCAATTAGGTCATTGTCTTGGATGTAAGAATGAGAAAGACCATAAACTTCTACTTTTAAGATACGCAAATAACGTTAGGTGTTATAATGTTTAGTGATTTTTTTAATTATTGGTCCACGGTGGACCACCTATTAAGATTGAGTACTAAATTTAGAAAAAAAAAAATCATTATTATGCAGTGTTATTGAGTTAAGTTGATTTTGAATTGAGTAGTAATGAATACTAAGTTATCAATTTGTGAACGATGATTATTACTACTGCAGGGGTTATTACAAGTGCAGCAGTGTTAAAGGTTGTCCAGCACGAAAACATGTAGAAAGAGCTTTGGATGATCCATCTATGTTGGTAGTTACTTATGAAGGCGACCACAATCACTCCCTCTCTATGGTTGAAGCTAATAATCTCATCTTAGAATCCTCTTGA
Protein sequence

>MS.gene041042.t1

MAVELMMGHKNNNLTNKFQENAVQEAASGLQSIEKLIKLLSSSQACSSNTNPNSMDYKTVADVAVSKFKNVISLLNQNGTRTGHARFRRAPLPSPTSTSETRVYHATPLQQIPPLIPNNDVIDKNIIDFSYSSQVSSSFGKSCVSSCSLKRKCSSENFGNEKCGSSSSHCHCSKKRKMRLKRVVRVAAISLKMADIPTDEYSWRKYGQKPIKGSPHPRGYYKCSSVKGCPARKHVERALDDPSMLVVTYEGDHNHSLSMVEANNLILESS