Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene041064.t1 | XP_003611714.1 | 94.2 | 311 | 17 | 1 | 38 | 347 | 34 | 344 | 1.70E-152 | 548.9 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene041064.t1 | Q9FUA4 | 51.8 | 226 | 82 | 5 | 74 | 296 | 156 | 357 | 1.4e-41 | 171.8 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene041064.t1 | G7K6L5 | 94.2 | 311 | 17 | 1 | 38 | 347 | 34 | 344 | 1.2e-152 | 548.9 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene041064.t1 | TF | bHLH |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene041064.t1 | MTR_5g017040 | 94.627 | 335 | 17 | 1 | 14 | 347 | 10 | 344 | 0.0 | 602 |
MS.gene041064.t1 | MTR_1g019240 | 81.319 | 91 | 16 | 1 | 97 | 186 | 73 | 163 | 4.37e-42 | 147 |
MS.gene041064.t1 | MTR_1g084980 | 57.983 | 119 | 49 | 1 | 79 | 197 | 434 | 551 | 1.73e-33 | 131 |
MS.gene041064.t1 | MTR_7g099540 | 60.345 | 116 | 39 | 3 | 72 | 183 | 213 | 325 | 7.13e-32 | 124 |
MS.gene041064.t1 | MTR_7g099540 | 57.500 | 120 | 42 | 3 | 72 | 183 | 213 | 331 | 7.15e-30 | 119 |
MS.gene041064.t1 | MTR_1g069155 | 59.813 | 107 | 38 | 3 | 77 | 183 | 289 | 390 | 2.28e-29 | 118 |
MS.gene041064.t1 | MTR_3g449770 | 48.551 | 138 | 60 | 5 | 109 | 243 | 310 | 439 | 2.18e-26 | 109 |
MS.gene041064.t1 | MTR_7g111320 | 55.140 | 107 | 42 | 1 | 104 | 204 | 428 | 534 | 5.09e-24 | 103 |
MS.gene041064.t1 | MTR_7g110810 | 50.549 | 91 | 42 | 1 | 88 | 178 | 185 | 272 | 5.74e-22 | 95.9 |
MS.gene041064.t1 | MTR_4g131160 | 35.664 | 143 | 72 | 2 | 33 | 172 | 135 | 260 | 2.47e-19 | 88.6 |
MS.gene041064.t1 | MTR_4g131160 | 36.029 | 136 | 67 | 2 | 40 | 172 | 145 | 263 | 7.82e-19 | 87.0 |
MS.gene041064.t1 | MTR_1g080890 | 46.250 | 80 | 43 | 0 | 93 | 172 | 178 | 257 | 2.97e-17 | 82.0 |
MS.gene041064.t1 | MTR_1g084980 | 48.387 | 93 | 44 | 2 | 79 | 171 | 434 | 522 | 3.62e-16 | 79.7 |
MS.gene041064.t1 | MTR_5g005110 | 44.048 | 84 | 45 | 1 | 101 | 184 | 219 | 300 | 1.16e-15 | 77.4 |
MS.gene041064.t1 | MTR_8g099880 | 32.353 | 170 | 86 | 8 | 95 | 243 | 135 | 296 | 1.06e-14 | 74.3 |
MS.gene041064.t1 | MTR_3g498825 | 41.758 | 91 | 48 | 3 | 94 | 183 | 136 | 222 | 1.60e-13 | 70.9 |
MS.gene041064.t1 | MTR_3g103030 | 39.535 | 86 | 50 | 1 | 98 | 183 | 221 | 304 | 3.35e-13 | 70.1 |
MS.gene041064.t1 | MTR_1g106480 | 37.000 | 100 | 51 | 2 | 76 | 172 | 43 | 133 | 3.91e-13 | 67.0 |
MS.gene041064.t1 | MTR_1g106470 | 37.179 | 78 | 49 | 0 | 107 | 184 | 195 | 272 | 5.51e-13 | 68.9 |
MS.gene041064.t1 | MTR_3g116770 | 49.231 | 65 | 32 | 1 | 110 | 173 | 193 | 257 | 6.73e-13 | 69.7 |
MS.gene041064.t1 | MTR_3g116770 | 49.231 | 65 | 32 | 1 | 110 | 173 | 193 | 257 | 7.01e-13 | 69.3 |
MS.gene041064.t1 | MTR_1g106460 | 38.824 | 85 | 52 | 0 | 115 | 199 | 245 | 329 | 8.02e-13 | 68.9 |
MS.gene041064.t1 | MTR_1g018090 | 40.244 | 82 | 47 | 1 | 102 | 183 | 270 | 349 | 8.87e-13 | 68.9 |
MS.gene041064.t1 | MTR_7g053410 | 49.231 | 65 | 32 | 1 | 110 | 173 | 319 | 383 | 1.09e-12 | 69.3 |
MS.gene041064.t1 | MTR_7g053410 | 49.231 | 65 | 32 | 1 | 110 | 173 | 319 | 383 | 1.19e-12 | 69.3 |
MS.gene041064.t1 | MTR_8g065740 | 49.231 | 65 | 32 | 1 | 110 | 173 | 307 | 371 | 1.21e-12 | 68.9 |
MS.gene041064.t1 | MTR_8g012290 | 49.231 | 65 | 32 | 1 | 110 | 173 | 293 | 357 | 1.77e-12 | 68.6 |
MS.gene041064.t1 | MTR_8g012290 | 49.231 | 65 | 32 | 1 | 110 | 173 | 293 | 357 | 1.82e-12 | 68.6 |
MS.gene041064.t1 | MTR_8g062240 | 46.154 | 65 | 34 | 1 | 110 | 173 | 153 | 217 | 1.94e-12 | 67.0 |
MS.gene041064.t1 | MTR_1g017350 | 47.692 | 65 | 33 | 1 | 110 | 173 | 262 | 326 | 2.88e-12 | 67.8 |
MS.gene041064.t1 | MTR_1g017350 | 47.692 | 65 | 33 | 1 | 110 | 173 | 262 | 326 | 2.99e-12 | 67.8 |
MS.gene041064.t1 | MTR_4g070320 | 47.692 | 65 | 33 | 1 | 110 | 173 | 145 | 209 | 3.34e-12 | 67.0 |
MS.gene041064.t1 | MTR_1g017350 | 47.692 | 65 | 33 | 1 | 110 | 173 | 262 | 326 | 3.35e-12 | 67.4 |
MS.gene041064.t1 | MTR_1g017350 | 47.692 | 65 | 33 | 1 | 110 | 173 | 262 | 326 | 3.41e-12 | 67.4 |
MS.gene041064.t1 | MTR_5g037250 | 38.384 | 99 | 58 | 2 | 76 | 173 | 82 | 178 | 4.61e-12 | 65.5 |
MS.gene041064.t1 | MTR_5g048860 | 47.692 | 65 | 33 | 1 | 110 | 173 | 367 | 431 | 8.84e-12 | 66.6 |
MS.gene041064.t1 | MTR_1g070870 | 43.590 | 78 | 44 | 0 | 95 | 172 | 110 | 187 | 4.46e-11 | 63.2 |
MS.gene041064.t1 | MTR_1g070870 | 43.590 | 78 | 44 | 0 | 95 | 172 | 107 | 184 | 4.64e-11 | 63.2 |
MS.gene041064.t1 | MTR_1g072320 | 41.975 | 81 | 41 | 1 | 100 | 174 | 446 | 526 | 5.68e-11 | 64.3 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene041064.t1 | AT4G36930 | 49.099 | 222 | 86 | 5 | 78 | 296 | 160 | 357 | 3.29e-47 | 164 |
MS.gene041064.t1 | AT5G67110 | 52.381 | 168 | 57 | 5 | 16 | 181 | 14 | 160 | 3.89e-37 | 133 |
MS.gene041064.t1 | AT1G09530 | 60.177 | 113 | 40 | 3 | 82 | 191 | 311 | 421 | 1.83e-31 | 124 |
MS.gene041064.t1 | AT1G09530 | 60.177 | 113 | 40 | 3 | 82 | 191 | 311 | 421 | 1.83e-31 | 124 |
MS.gene041064.t1 | AT1G09530 | 60.177 | 113 | 40 | 3 | 82 | 191 | 311 | 421 | 1.83e-31 | 124 |
MS.gene041064.t1 | AT1G09530 | 60.177 | 113 | 40 | 3 | 82 | 191 | 311 | 421 | 1.83e-31 | 124 |
MS.gene041064.t1 | AT1G09530 | 60.177 | 113 | 40 | 3 | 82 | 191 | 311 | 421 | 1.83e-31 | 124 |
MS.gene041064.t1 | AT1G09530 | 60.177 | 113 | 40 | 3 | 82 | 191 | 311 | 421 | 1.83e-31 | 124 |
MS.gene041064.t1 | AT2G20180 | 64.516 | 93 | 23 | 1 | 80 | 172 | 189 | 271 | 6.75e-30 | 118 |
MS.gene041064.t1 | AT2G20180 | 64.516 | 93 | 23 | 1 | 80 | 172 | 189 | 271 | 6.75e-30 | 118 |
MS.gene041064.t1 | AT2G20180 | 64.516 | 93 | 23 | 1 | 80 | 172 | 189 | 271 | 6.75e-30 | 118 |
MS.gene041064.t1 | AT2G20180 | 64.516 | 93 | 23 | 1 | 80 | 172 | 260 | 342 | 1.90e-29 | 118 |
MS.gene041064.t1 | AT2G20180 | 64.516 | 93 | 23 | 1 | 80 | 172 | 260 | 342 | 1.90e-29 | 118 |
MS.gene041064.t1 | AT2G20180 | 64.516 | 93 | 23 | 1 | 80 | 172 | 260 | 342 | 1.90e-29 | 118 |
MS.gene041064.t1 | AT2G20180 | 64.516 | 93 | 23 | 1 | 80 | 172 | 260 | 342 | 1.90e-29 | 118 |
MS.gene041064.t1 | AT2G20180 | 64.444 | 90 | 22 | 1 | 80 | 169 | 260 | 339 | 3.16e-28 | 112 |
MS.gene041064.t1 | AT4G00050 | 50.862 | 116 | 49 | 3 | 61 | 174 | 62 | 171 | 6.46e-27 | 108 |
MS.gene041064.t1 | AT4G00050 | 50.862 | 116 | 49 | 3 | 61 | 174 | 164 | 273 | 2.00e-26 | 108 |
MS.gene041064.t1 | AT4G00050 | 55.340 | 103 | 41 | 2 | 74 | 174 | 174 | 273 | 2.34e-26 | 108 |
MS.gene041064.t1 | AT4G28800 | 43.382 | 136 | 72 | 4 | 48 | 181 | 189 | 321 | 6.80e-23 | 99.4 |
MS.gene041064.t1 | AT2G46970 | 44.248 | 113 | 59 | 1 | 103 | 215 | 187 | 295 | 2.56e-22 | 97.1 |
MS.gene041064.t1 | AT2G46970 | 44.248 | 113 | 59 | 1 | 103 | 215 | 196 | 304 | 3.03e-22 | 97.1 |
MS.gene041064.t1 | AT2G46970 | 44.248 | 113 | 59 | 1 | 103 | 215 | 218 | 326 | 3.53e-22 | 97.1 |
MS.gene041064.t1 | AT4G28815 | 37.162 | 148 | 75 | 5 | 108 | 249 | 68 | 203 | 8.69e-21 | 90.1 |
MS.gene041064.t1 | AT4G28790 | 50.962 | 104 | 47 | 3 | 80 | 183 | 246 | 345 | 1.10e-20 | 92.8 |
MS.gene041064.t1 | AT3G59060 | 58.427 | 89 | 30 | 2 | 109 | 191 | 251 | 338 | 1.15e-20 | 92.8 |
MS.gene041064.t1 | AT3G59060 | 58.427 | 89 | 30 | 2 | 109 | 191 | 251 | 338 | 1.16e-20 | 92.8 |
MS.gene041064.t1 | AT3G59060 | 58.427 | 89 | 30 | 2 | 109 | 191 | 251 | 338 | 1.16e-20 | 92.8 |
MS.gene041064.t1 | AT3G59060 | 58.427 | 89 | 30 | 2 | 109 | 191 | 251 | 338 | 1.16e-20 | 92.8 |
MS.gene041064.t1 | AT4G28800 | 34.259 | 216 | 121 | 9 | 48 | 248 | 201 | 410 | 1.76e-20 | 92.4 |
MS.gene041064.t1 | AT4G28815 | 37.162 | 148 | 75 | 5 | 108 | 249 | 144 | 279 | 2.30e-20 | 90.5 |
MS.gene041064.t1 | AT2G24260 | 60.317 | 63 | 25 | 0 | 110 | 172 | 37 | 99 | 6.74e-20 | 87.8 |
MS.gene041064.t1 | AT2G43010 | 75.806 | 62 | 15 | 0 | 109 | 170 | 252 | 313 | 1.04e-19 | 90.1 |
MS.gene041064.t1 | AT2G43010 | 75.806 | 62 | 15 | 0 | 109 | 170 | 252 | 313 | 1.04e-19 | 89.7 |
MS.gene041064.t1 | AT2G43010 | 75.806 | 62 | 15 | 0 | 109 | 170 | 252 | 313 | 1.05e-19 | 90.1 |
MS.gene041064.t1 | AT2G43010 | 75.806 | 62 | 15 | 0 | 109 | 170 | 259 | 320 | 1.20e-19 | 89.7 |
MS.gene041064.t1 | AT2G43010 | 75.806 | 62 | 15 | 0 | 109 | 170 | 294 | 355 | 1.66e-19 | 89.7 |
MS.gene041064.t1 | AT4G30980 | 37.778 | 135 | 71 | 2 | 38 | 172 | 73 | 194 | 1.66e-19 | 88.2 |
MS.gene041064.t1 | AT5G58010 | 57.576 | 66 | 28 | 0 | 107 | 172 | 98 | 163 | 1.80e-19 | 87.8 |
MS.gene041064.t1 | AT2G24260 | 60.317 | 63 | 25 | 0 | 110 | 172 | 140 | 202 | 1.85e-19 | 88.6 |
MS.gene041064.t1 | AT4G28790 | 54.255 | 94 | 40 | 2 | 80 | 173 | 246 | 336 | 2.04e-19 | 88.2 |
MS.gene041064.t1 | AT4G30980 | 37.778 | 135 | 71 | 2 | 38 | 172 | 121 | 242 | 2.16e-19 | 88.6 |
MS.gene041064.t1 | AT5G67110 | 41.071 | 168 | 54 | 6 | 16 | 181 | 14 | 138 | 5.60e-18 | 81.3 |
MS.gene041064.t1 | AT5G61270 | 58.333 | 72 | 30 | 0 | 105 | 176 | 69 | 140 | 3.58e-17 | 80.9 |
MS.gene041064.t1 | AT5G61270 | 58.333 | 72 | 30 | 0 | 105 | 176 | 69 | 140 | 3.58e-17 | 80.9 |
MS.gene041064.t1 | AT5G61270 | 58.333 | 72 | 30 | 0 | 105 | 176 | 157 | 228 | 6.33e-17 | 81.3 |
MS.gene041064.t1 | AT3G62090 | 36.571 | 175 | 82 | 6 | 99 | 249 | 156 | 325 | 1.26e-16 | 80.1 |
MS.gene041064.t1 | AT3G62090 | 36.571 | 175 | 82 | 6 | 99 | 249 | 173 | 342 | 1.36e-16 | 80.5 |
MS.gene041064.t1 | AT5G67110 | 41.667 | 144 | 61 | 5 | 16 | 157 | 14 | 136 | 6.11e-16 | 74.7 |
MS.gene041064.t1 | AT1G25330 | 35.897 | 117 | 64 | 2 | 110 | 215 | 106 | 222 | 6.94e-15 | 73.6 |
MS.gene041064.t1 | AT4G28811 | 57.500 | 80 | 34 | 0 | 92 | 171 | 335 | 414 | 1.09e-14 | 75.5 |
MS.gene041064.t1 | AT1G26260 | 37.736 | 106 | 50 | 2 | 84 | 173 | 133 | 238 | 2.70e-14 | 73.6 |
MS.gene041064.t1 | AT1G26260 | 37.736 | 106 | 50 | 2 | 84 | 173 | 184 | 289 | 2.72e-14 | 73.6 |
MS.gene041064.t1 | AT1G26260 | 37.736 | 106 | 50 | 2 | 84 | 173 | 184 | 289 | 2.72e-14 | 73.6 |
MS.gene041064.t1 | AT1G26260 | 37.736 | 106 | 50 | 2 | 84 | 173 | 184 | 289 | 2.72e-14 | 73.6 |
MS.gene041064.t1 | AT1G26260 | 37.736 | 106 | 50 | 2 | 84 | 173 | 184 | 289 | 2.72e-14 | 73.6 |
MS.gene041064.t1 | AT1G26260 | 37.736 | 106 | 50 | 2 | 84 | 173 | 162 | 267 | 2.77e-14 | 73.6 |
MS.gene041064.t1 | AT4G33880 | 40.659 | 91 | 49 | 2 | 96 | 183 | 253 | 341 | 3.56e-14 | 73.2 |
MS.gene041064.t1 | AT1G02340 | 35.616 | 146 | 66 | 5 | 84 | 229 | 123 | 240 | 3.69e-14 | 72.4 |
MS.gene041064.t1 | AT1G02340 | 35.616 | 146 | 66 | 5 | 84 | 229 | 116 | 233 | 3.77e-14 | 72.4 |
MS.gene041064.t1 | AT1G68920 | 39.316 | 117 | 58 | 4 | 110 | 224 | 304 | 409 | 7.03e-14 | 72.8 |
MS.gene041064.t1 | AT1G27740 | 37.374 | 99 | 57 | 2 | 100 | 195 | 161 | 257 | 7.06e-14 | 71.2 |
MS.gene041064.t1 | AT1G68920 | 39.316 | 117 | 58 | 4 | 110 | 224 | 305 | 410 | 7.78e-14 | 72.8 |
MS.gene041064.t1 | AT1G68920 | 39.316 | 117 | 58 | 4 | 110 | 224 | 305 | 410 | 7.78e-14 | 72.8 |
MS.gene041064.t1 | AT1G68920 | 39.316 | 117 | 58 | 4 | 110 | 224 | 305 | 410 | 7.78e-14 | 72.8 |
MS.gene041064.t1 | AT5G50915 | 36.424 | 151 | 78 | 7 | 87 | 223 | 109 | 255 | 1.17e-13 | 70.9 |
MS.gene041064.t1 | AT5G50915 | 36.424 | 151 | 78 | 7 | 87 | 223 | 109 | 255 | 1.17e-13 | 70.9 |
MS.gene041064.t1 | AT5G50915 | 36.424 | 151 | 78 | 7 | 87 | 223 | 109 | 255 | 1.17e-13 | 70.5 |
MS.gene041064.t1 | AT5G50915 | 36.424 | 151 | 78 | 7 | 87 | 223 | 109 | 255 | 1.17e-13 | 70.5 |
MS.gene041064.t1 | AT5G43175 | 31.967 | 122 | 78 | 2 | 77 | 195 | 103 | 222 | 2.77e-13 | 68.9 |
MS.gene041064.t1 | AT3G07340 | 42.268 | 97 | 52 | 3 | 79 | 173 | 230 | 324 | 3.87e-13 | 70.5 |
MS.gene041064.t1 | AT2G14760 | 39.506 | 81 | 47 | 1 | 104 | 184 | 235 | 313 | 4.20e-13 | 69.7 |
MS.gene041064.t1 | AT3G07340 | 42.268 | 97 | 52 | 3 | 79 | 173 | 230 | 324 | 5.00e-13 | 70.1 |
MS.gene041064.t1 | AT5G48560 | 49.231 | 65 | 32 | 1 | 110 | 173 | 303 | 367 | 1.32e-12 | 68.9 |
MS.gene041064.t1 | AT4G36540 | 47.692 | 65 | 33 | 1 | 110 | 173 | 143 | 207 | 1.33e-12 | 68.2 |
MS.gene041064.t1 | AT4G36540 | 47.692 | 65 | 33 | 1 | 110 | 173 | 143 | 207 | 1.35e-12 | 68.2 |
MS.gene041064.t1 | AT5G48560 | 49.231 | 65 | 32 | 1 | 110 | 173 | 303 | 367 | 1.48e-12 | 68.9 |
MS.gene041064.t1 | AT2G14760 | 41.791 | 67 | 39 | 0 | 117 | 183 | 259 | 325 | 1.50e-12 | 68.2 |
MS.gene041064.t1 | AT2G18300 | 47.692 | 65 | 33 | 1 | 110 | 173 | 187 | 251 | 2.37e-12 | 67.4 |
MS.gene041064.t1 | AT2G18300 | 47.692 | 65 | 33 | 1 | 110 | 173 | 187 | 251 | 2.43e-12 | 67.4 |
MS.gene041064.t1 | AT4G34530 | 44.615 | 65 | 35 | 1 | 110 | 173 | 174 | 238 | 3.06e-12 | 67.4 |
MS.gene041064.t1 | AT2G18300 | 47.692 | 65 | 33 | 1 | 110 | 173 | 187 | 251 | 3.07e-12 | 67.4 |
MS.gene041064.t1 | AT5G62610 | 42.391 | 92 | 44 | 4 | 110 | 192 | 155 | 246 | 3.14e-12 | 66.6 |
MS.gene041064.t1 | AT5G62610 | 42.391 | 92 | 44 | 4 | 110 | 192 | 155 | 246 | 3.14e-12 | 66.6 |
MS.gene041064.t1 | AT1G59640 | 46.154 | 65 | 34 | 1 | 110 | 173 | 138 | 202 | 3.89e-12 | 66.2 |
MS.gene041064.t1 | AT3G23690 | 35.922 | 103 | 62 | 2 | 72 | 173 | 158 | 257 | 4.02e-12 | 67.0 |
MS.gene041064.t1 | AT1G59640 | 44.737 | 76 | 39 | 2 | 99 | 173 | 129 | 202 | 4.42e-12 | 66.6 |
MS.gene041064.t1 | AT1G10120 | 44.304 | 79 | 41 | 2 | 96 | 173 | 196 | 272 | 5.32e-12 | 66.6 |
MS.gene041064.t1 | AT1G10120 | 44.304 | 79 | 41 | 2 | 96 | 173 | 196 | 272 | 5.32e-12 | 66.6 |
MS.gene041064.t1 | AT1G73830 | 43.077 | 65 | 36 | 1 | 110 | 173 | 149 | 213 | 1.21e-11 | 64.7 |
MS.gene041064.t1 | AT1G73830 | 43.077 | 65 | 36 | 1 | 110 | 173 | 149 | 213 | 1.40e-11 | 64.3 |
MS.gene041064.t1 | AT1G18400 | 41.538 | 65 | 37 | 1 | 110 | 173 | 147 | 211 | 6.39e-11 | 62.4 |
MS.gene041064.t1 | AT1G18400 | 41.538 | 65 | 37 | 1 | 110 | 173 | 147 | 211 | 8.01e-11 | 62.4 |
Find 72 sgRNAs with CRISPR-Local
Find 147 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GTATGCACCTTGTTAGAATT+TGG | 0.170114 | 5.2:-9213451 | None:intergenic |
CTTGGAGCTGAAGCTGTTTA+AGG | 0.179292 | 5.2:-9213600 | None:intergenic |
TCCATCTTGAAGCTGGTTAA+TGG | 0.190515 | 5.2:-9212621 | None:intergenic |
AGAGTAGATGTCATATTTAA+AGG | 0.257417 | 5.2:-9214345 | None:intergenic |
ACAACACAGAAACTTCTTTC+GGG | 0.279808 | 5.2:+9214469 | MS.gene041064:CDS |
CAAAGTCAGCTGGTGCTTCT+AGG | 0.289683 | 5.2:+9213231 | MS.gene041064:CDS |
ACTTCTTTCGGGGTGGAATC+TGG | 0.303794 | 5.2:+9214480 | MS.gene041064:CDS |
AATTTATTGCATTCAATTGC+TGG | 0.330715 | 5.2:-9214666 | None:intergenic |
AACAACACAGAAACTTCTTT+CGG | 0.333925 | 5.2:+9214468 | MS.gene041064:CDS |
GAAGCACCAGCTGACTTTGT+TGG | 0.365170 | 5.2:-9213227 | None:intergenic |
GGCTTACCTCTGAAGATTGT+TGG | 0.371609 | 5.2:-9214527 | None:intergenic |
AATGTATCTTCCTCTTCTGT+TGG | 0.387184 | 5.2:+9212689 | MS.gene041064:CDS |
ACTTTGCAAACTTGTGTTGC+CGG | 0.389000 | 5.2:+9214855 | MS.gene041064:CDS |
CAGATGCTGTCATTGAGAAA+TGG | 0.389953 | 5.2:+9214228 | MS.gene041064:intron |
CGCTCCTGACTGATCTCTTC+CGG | 0.402152 | 5.2:-9214874 | None:intergenic |
GAGTAGATGTCATATTTAAA+GGG | 0.403422 | 5.2:-9214344 | None:intergenic |
GATACATTTAAAGCATGGTT+TGG | 0.405835 | 5.2:-9212674 | None:intergenic |
TCTTCATCTTCTTCCATGCC+AGG | 0.415588 | 5.2:+9212596 | MS.gene041064:CDS |
TACATTCTCTGCCTTTGTCT+CGG | 0.426810 | 5.2:+9214286 | MS.gene041064:CDS |
TCCTCTTCTGTTGGAGCAGG+AGG | 0.430203 | 5.2:+9212698 | MS.gene041064:CDS |
TGCAAAGTATTGTTAGTAGT+AGG | 0.434216 | 5.2:-9214840 | None:intergenic |
TCTGTGTTGTTAATATATGA+AGG | 0.439351 | 5.2:-9214456 | None:intergenic |
AGTTCATAATTTGTCAGAAA+AGG | 0.440757 | 5.2:+9213283 | MS.gene041064:CDS |
CTGCGATGTAAATATAATGT+TGG | 0.441190 | 5.2:-9214916 | None:intergenic |
TGCGATGTAAATATAATGTT+GGG | 0.441986 | 5.2:-9214915 | None:intergenic |
TATTTACATCGCAGTTAAGT+AGG | 0.447661 | 5.2:+9214925 | MS.gene041064:CDS |
TTTAAATTTGCAGGAGGGCG+TGG | 0.450761 | 5.2:+9213184 | MS.gene041064:intron |
AACAAGTCTTCGCCGTGTAT+TGG | 0.455886 | 5.2:-9214637 | None:intergenic |
TAGATTGGATGCATAAAGTA+AGG | 0.456385 | 5.2:-9214388 | None:intergenic |
TTGAGAACCGCCTAATAGAT+TGG | 0.459843 | 5.2:-9214695 | None:intergenic |
TCTTCCTCTTCTGTTGGAGC+AGG | 0.460002 | 5.2:+9212695 | MS.gene041064:CDS |
AAAAGATACAAACCTGTACT+TGG | 0.469577 | 5.2:-9213618 | None:intergenic |
CATCCTATGTACTTTCATGA+AGG | 0.470473 | 5.2:+9214261 | MS.gene041064:CDS |
CATAAAGTAAGGAGTTGTCT+AGG | 0.474565 | 5.2:-9214377 | None:intergenic |
AGATCTTTCCATCTTGAAGC+TGG | 0.476129 | 5.2:-9212628 | None:intergenic |
GACTTGTTGAGCAGAGAAGA+AGG | 0.487830 | 5.2:+9213386 | MS.gene041064:intron |
TGAAGCTGGTTAATGGATCC+TGG | 0.492297 | 5.2:-9212614 | None:intergenic |
ACAGCTTCAGCTCCAAGTAC+AGG | 0.499989 | 5.2:+9213606 | MS.gene041064:CDS |
GCCTTTGTCTCGGATGAGTA+CGG | 0.506740 | 5.2:+9214296 | MS.gene041064:CDS |
AAGGAGTTGTCTAGGGGATG+AGG | 0.512056 | 5.2:-9214369 | None:intergenic |
TTGAGCAGAGAAGAAGGAGT+AGG | 0.520380 | 5.2:+9213392 | MS.gene041064:intron |
TCCATTAACCAGCTTCAAGA+TGG | 0.520381 | 5.2:+9212620 | MS.gene041064:CDS |
GAAGGATAGGAAGACATTGA+TGG | 0.522616 | 5.2:-9214438 | None:intergenic |
AGGAAGATACATTTAAAGCA+TGG | 0.529279 | 5.2:-9212679 | None:intergenic |
TGGTCTAGAAGTTGAATCAA+AGG | 0.533794 | 5.2:-9212654 | None:intergenic |
GTTGTTAATATATGAAGGAT+AGG | 0.536631 | 5.2:-9214451 | None:intergenic |
ATAAAGTAAGGAGTTGTCTA+GGG | 0.541699 | 5.2:-9214376 | None:intergenic |
GAAGTTCCAACAAAGTCAGC+TGG | 0.551060 | 5.2:+9213221 | MS.gene041064:CDS |
TCCTCCTGCTCCAACAGAAG+AGG | 0.551374 | 5.2:-9212699 | None:intergenic |
AGAGATTTCGTCTTGTGAAG+AGG | 0.551908 | 5.2:-9212543 | None:intergenic |
AGAATTTCAGTCGGGCGCAA+TGG | 0.555643 | 5.2:+9214812 | MS.gene041064:CDS |
AGCTGTCAAAGAATTTCAGT+CGG | 0.555801 | 5.2:+9214803 | MS.gene041064:intron |
AACATAACAACAACATGGCT+CGG | 0.564736 | 5.2:+9212504 | MS.gene041064:CDS |
GCTGTCAAAGAATTTCAGTC+GGG | 0.565127 | 5.2:+9214804 | MS.gene041064:intron |
CAACACAGAAACTTCTTTCG+GGG | 0.582522 | 5.2:+9214470 | MS.gene041064:CDS |
CACAGAAACTTCTTTCGGGG+TGG | 0.588598 | 5.2:+9214473 | MS.gene041064:CDS |
CTGGTTAATGGATCCTGGCA+TGG | 0.589932 | 5.2:-9212609 | None:intergenic |
AATCTATTAGGCGGTTCTCA+AGG | 0.591562 | 5.2:+9214697 | MS.gene041064:CDS |
AAGCCTTCATGAAAGTACAT+AGG | 0.613283 | 5.2:-9214264 | None:intergenic |
AAGAAGATGAAGATGAACGA+AGG | 0.614318 | 5.2:-9212586 | None:intergenic |
TGATTTGTTAAGCCAATACA+CGG | 0.617977 | 5.2:+9214625 | MS.gene041064:intron |
TCCGTACTCATCCGAGACAA+AGG | 0.621173 | 5.2:-9214297 | None:intergenic |
GTTGCCGGAAGAGATCAGTC+AGG | 0.629530 | 5.2:+9214870 | MS.gene041064:CDS |
ATGAGTACGGAGTTGAGTGA+AGG | 0.632944 | 5.2:+9214309 | MS.gene041064:CDS |
ACGGAGTTGAGTGAAGGAAA+CGG | 0.636148 | 5.2:+9214315 | MS.gene041064:CDS |
ACGTCTCCAACAATCTTCAG+AGG | 0.636386 | 5.2:+9214521 | MS.gene041064:CDS |
TCTAATTCCAAATTCTAACA+AGG | 0.656662 | 5.2:+9213444 | MS.gene041064:CDS |
TAAAGTAAGGAGTTGTCTAG+GGG | 0.660787 | 5.2:-9214375 | None:intergenic |
GTTGGAGCAGGAGGACTCAG+TGG | 0.665702 | 5.2:+9212707 | MS.gene041064:CDS |
CGGAAGAGATCAGTCAGGAG+CGG | 0.684799 | 5.2:+9214875 | MS.gene041064:CDS |
TGAATATGACTGTGAAAGTG+AGG | 0.701990 | 5.2:+9212742 | MS.gene041064:CDS |
AATGGAACATAACAACAACA+TGG | 0.706557 | 5.2:+9212499 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | AAATATTTAGTATTGATGAT+GGG | - | chr5.2:9213793-9213812 | None:intergenic | 15.0% |
!!! | AGATTAATATTGATTACAAT+TGG | + | chr5.2:9213966-9213985 | MS.gene041064:intron | 15.0% |
!!! | ATCAAAGTATTATTCTTTTT+AGG | - | chr5.2:9213057-9213076 | None:intergenic | 15.0% |
!!! | TAAATATTTAGTATTGATGA+TGG | - | chr5.2:9213794-9213813 | None:intergenic | 15.0% |
!! | AAAAAGTAAAAATGAGTGTA+AGG | - | chr5.2:9213746-9213765 | None:intergenic | 20.0% |
!! | AAAAGTAAAAATGAGTGTAA+GGG | - | chr5.2:9213745-9213764 | None:intergenic | 20.0% |
!! | AAGAATAATACTTTGATTCT+TGG | + | chr5.2:9213060-9213079 | MS.gene041064:intron | 20.0% |
!! | ACATGAATACATAAAAAGAA+AGG | - | chr5.2:9212805-9212824 | None:intergenic | 20.0% |
!! | ATTCTTAAACCATAGTTTAA+AGG | + | chr5.2:9213475-9213494 | MS.gene041064:intron | 20.0% |
!! | CTATGTAAAAAAATGAAAAG+TGG | - | chr5.2:9213716-9213735 | None:intergenic | 20.0% |
!! | TAGAATTATTCTTAATGTAG+TGG | + | chr5.2:9213517-9213536 | MS.gene041064:intron | 20.0% |
!! | TTCTTAAACCATAGTTTAAA+GGG | + | chr5.2:9213476-9213495 | MS.gene041064:intron | 20.0% |
!!! | AATTCTTTTACCAATCTATT+AGG | + | chr5.2:9214685-9214704 | MS.gene041064:CDS | 20.0% |
!!! | CACTTTTCATTTTTTTACAT+AGG | + | chr5.2:9213714-9213733 | MS.gene041064:intron | 20.0% |
!!! | CTTGATTTCAATTTTATTTG+TGG | + | chr5.2:9213333-9213352 | MS.gene041064:intron | 20.0% |
!!! | TAATTTTTTACTCAATGTCT+TGG | + | chr5.2:9212922-9212941 | MS.gene041064:intron | 20.0% |
!!! | TATTGTTTGTATGTGTATTT+TGG | + | chr5.2:9212989-9213008 | MS.gene041064:intron | 20.0% |
!!! | TTCTTTTTATGTATTCATGT+GGG | + | chr5.2:9212805-9212824 | MS.gene041064:intron | 20.0% |
!!! | TTTCTTTTTATGTATTCATG+TGG | + | chr5.2:9212804-9212823 | MS.gene041064:intron | 20.0% |
! | AAAAAACACCCTTTAAACTA+TGG | - | chr5.2:9213487-9213506 | None:intergenic | 25.0% |
! | AACATTTGAAGGATAATTAG+TGG | + | chr5.2:9214014-9214033 | MS.gene041064:intron | 25.0% |
! | AATTTATTGCATTCAATTGC+TGG | - | chr5.2:9214669-9214688 | None:intergenic | 25.0% |
! | ACTAATTATCCTTCAAATGT+TGG | - | chr5.2:9214015-9214034 | None:intergenic | 25.0% |
! | AGAGTAGATGTCATATTTAA+AGG | - | chr5.2:9214348-9214367 | None:intergenic | 25.0% |
! | ATAGCAAATTCAATCTAACA+AGG | - | chr5.2:9214159-9214178 | None:intergenic | 25.0% |
! | ATTTGAGAAGATGTAAGTAA+TGG | + | chr5.2:9213860-9213879 | MS.gene041064:intron | 25.0% |
! | GAGTAGATGTCATATTTAAA+GGG | - | chr5.2:9214347-9214366 | None:intergenic | 25.0% |
! | GTTGTTAATATATGAAGGAT+AGG | - | chr5.2:9214454-9214473 | None:intergenic | 25.0% |
! | TCTAATTCCAAATTCTAACA+AGG | + | chr5.2:9213444-9213463 | MS.gene041064:CDS | 25.0% |
! | TGCGATGTAAATATAATGTT+GGG | - | chr5.2:9214918-9214937 | None:intergenic | 25.0% |
! | TTAATGCAAGCAATAAAACA+TGG | + | chr5.2:9212961-9212980 | MS.gene041064:intron | 25.0% |
!! | AGTTCATAATTTGTCAGAAA+AGG | + | chr5.2:9213283-9213302 | MS.gene041064:CDS | 25.0% |
!! | ATTGCATCTTTTAAATTTGC+AGG | + | chr5.2:9213175-9213194 | MS.gene041064:intron | 25.0% |
!! | CACTTTTCAATTAAGCAAAT+TGG | + | chr5.2:9214059-9214078 | MS.gene041064:intron | 25.0% |
!! | TCTGTGTTGTTAATATATGA+AGG | - | chr5.2:9214459-9214478 | None:intergenic | 25.0% |
!! | TCTTTTTATGTATTCATGTG+GGG | + | chr5.2:9212806-9212825 | MS.gene041064:intron | 25.0% |
!!! | ACATCTTCTCAAATTAGTTT+TGG | - | chr5.2:9213854-9213873 | None:intergenic | 25.0% |
!!! | TAGATTGAATTTGCTATCAA+AGG | + | chr5.2:9214162-9214181 | MS.gene041064:intron | 25.0% |
!!! | TTTTGTTGGGATTTGATTTT+GGG | + | chr5.2:9213145-9213164 | MS.gene041064:intron | 25.0% |
!!! | TTTTTGTTGGGATTTGATTT+TGG | + | chr5.2:9213144-9213163 | MS.gene041064:intron | 25.0% |
AAAAGATACAAACCTGTACT+TGG | - | chr5.2:9213621-9213640 | None:intergenic | 30.0% | |
AAAATGAAAAGTGGAGATGA+CGG | - | chr5.2:9213707-9213726 | None:intergenic | 30.0% | |
AACAACACAGAAACTTCTTT+CGG | + | chr5.2:9214468-9214487 | MS.gene041064:CDS | 30.0% | |
ACGTCTTAAATTTGAATCGT+CGG | + | chr5.2:9213935-9213954 | MS.gene041064:intron | 30.0% | |
AGAGAATTACCAACATTTGA+AGG | + | chr5.2:9214003-9214022 | MS.gene041064:intron | 30.0% | |
ATAAAGTAAGGAGTTGTCTA+GGG | - | chr5.2:9214379-9214398 | None:intergenic | 30.0% | |
ATTCTAAATACTTCTCTCGA+CGG | + | chr5.2:9213883-9213902 | MS.gene041064:intron | 30.0% | |
CTGCGATGTAAATATAATGT+TGG | - | chr5.2:9214919-9214938 | None:intergenic | 30.0% | |
TAGATTGGATGCATAAAGTA+AGG | - | chr5.2:9214391-9214410 | None:intergenic | 30.0% | |
TATTTACATCGCAGTTAAGT+AGG | + | chr5.2:9214925-9214944 | MS.gene041064:CDS | 30.0% | |
TTTACTCAATGTCTTGGAAA+AGG | + | chr5.2:9212928-9212947 | MS.gene041064:intron | 30.0% | |
! | AGGAAGATACATTTAAAGCA+TGG | - | chr5.2:9212682-9212701 | None:intergenic | 30.0% |
! | ATTCAAATTTAAGACGTGTC+TGG | - | chr5.2:9213932-9213951 | None:intergenic | 30.0% |
! | ATTTTGCTTGTGGATTTTTG+TGG | + | chr5.2:9213363-9213382 | MS.gene041064:intron | 30.0% |
! | CATCTTTTAAATTTGCAGGA+GGG | + | chr5.2:9213179-9213198 | MS.gene041064:intron | 30.0% |
! | GATACATTTAAAGCATGGTT+TGG | - | chr5.2:9212677-9212696 | None:intergenic | 30.0% |
! | GGAATATTGTTGTGTTACTA+CGG | + | chr5.2:9214080-9214099 | MS.gene041064:intron | 30.0% |
! | TCTTTTACCAATCTATTAGG+CGG | + | chr5.2:9214688-9214707 | MS.gene041064:CDS | 30.0% |
! | TGGTTATGTAATTTTGCTTG+TGG | + | chr5.2:9213353-9213372 | MS.gene041064:intron | 30.0% |
! | TTTTGCTTGTGGATTTTTGT+GGG | + | chr5.2:9213364-9213383 | MS.gene041064:intron | 30.0% |
!! | TGATTTGTTAAGCCAATACA+CGG | + | chr5.2:9214625-9214644 | MS.gene041064:intron | 30.0% |
!! | TGCAAAGTATTGTTAGTAGT+AGG | - | chr5.2:9214843-9214862 | None:intergenic | 30.0% |
!! | TGTGTTTTTGTTAGGTAGAT+TGG | - | chr5.2:9214406-9214425 | None:intergenic | 30.0% |
!! | TTTGTTGGGATTTGATTTTG+GGG | + | chr5.2:9213146-9213165 | MS.gene041064:intron | 30.0% |
!!! | GTCGTTTTGTTGTTTTTGTT+GGG | + | chr5.2:9213132-9213151 | MS.gene041064:intron | 30.0% |
!!! | TGTCGTTTTGTTGTTTTTGT+TGG | + | chr5.2:9213131-9213150 | MS.gene041064:intron | 30.0% |
AAATGAAAAGTGGAGATGAC+GGG | - | chr5.2:9213706-9213725 | None:intergenic | 35.0% | |
AACATAACAACAACATGGCT+CGG | + | chr5.2:9212504-9212523 | MS.gene041064:CDS | 35.0% | |
AACTGTATGTGATCCTTATG+AGG | + | chr5.2:9214199-9214218 | MS.gene041064:intron | 35.0% | |
AAGAAGATGAAGATGAACGA+AGG | - | chr5.2:9212589-9212608 | None:intergenic | 35.0% | |
AATGTATCTTCCTCTTCTGT+TGG | + | chr5.2:9212689-9212708 | MS.gene041064:CDS | 35.0% | |
AATGTCTTGGAAAAGGTTCT+TGG | + | chr5.2:9212935-9212954 | MS.gene041064:intron | 35.0% | |
ACAACACAGAAACTTCTTTC+GGG | + | chr5.2:9214469-9214488 | MS.gene041064:CDS | 35.0% | |
ACAGCTGAAGTTATGAAACA+AGG | - | chr5.2:9214789-9214808 | None:intergenic | 35.0% | |
AGCTGTCAAAGAATTTCAGT+CGG | + | chr5.2:9214803-9214822 | MS.gene041064:intron | 35.0% | |
AGTAAAAATGAGTGTAAGGG+TGG | - | chr5.2:9213742-9213761 | None:intergenic | 35.0% | |
ATAAGGATCACATACAGTTC+AGG | - | chr5.2:9214198-9214217 | None:intergenic | 35.0% | |
CATAAAGTAAGGAGTTGTCT+AGG | - | chr5.2:9214380-9214399 | None:intergenic | 35.0% | |
CATCCTATGTACTTTCATGA+AGG | + | chr5.2:9214261-9214280 | MS.gene041064:CDS | 35.0% | |
GTAAAAATGAGTGTAAGGGT+GGG | - | chr5.2:9213741-9213760 | None:intergenic | 35.0% | |
GTATGCACCTTGTTAGAATT+TGG | - | chr5.2:9213454-9213473 | None:intergenic | 35.0% | |
GTGAGATTGTGGTATAAAAG+TGG | - | chr5.2:9214763-9214782 | None:intergenic | 35.0% | |
TAAAGTAAGGAGTTGTCTAG+GGG | - | chr5.2:9214378-9214397 | None:intergenic | 35.0% | |
TGAATATGACTGTGAAAGTG+AGG | + | chr5.2:9212742-9212761 | MS.gene041064:CDS | 35.0% | |
TGGTCTAGAAGTTGAATCAA+AGG | - | chr5.2:9212657-9212676 | None:intergenic | 35.0% | |
! | AAGCCTTCATGAAAGTACAT+AGG | - | chr5.2:9214267-9214286 | None:intergenic | 35.0% |
! | AATACGACATTCAAGTTTGC+AGG | - | chr5.2:9214556-9214575 | None:intergenic | 35.0% |
! | ACTGCACTTTTGTCCTATTT+TGG | + | chr5.2:9213647-9213666 | MS.gene041064:intron | 35.0% |
! | CTGCACTTTTGTCCTATTTT+GGG | + | chr5.2:9213648-9213667 | MS.gene041064:intron | 35.0% |
! | GCATCTGAAATATCCTCATA+AGG | - | chr5.2:9214215-9214234 | None:intergenic | 35.0% |
! | GCATCTTTTAAATTTGCAGG+AGG | + | chr5.2:9213178-9213197 | MS.gene041064:intron | 35.0% |
!! | CTCGACAATGTGTTTTTGTT+AGG | - | chr5.2:9214414-9214433 | None:intergenic | 35.0% |
AATCTATTAGGCGGTTCTCA+AGG | + | chr5.2:9214697-9214716 | MS.gene041064:CDS | 40.0% | |
ACATATGCCAGTGTCTTACA+AGG | + | chr5.2:9213826-9213845 | MS.gene041064:intron | 40.0% | |
ACTTTGCAAACTTGTGTTGC+CGG | + | chr5.2:9214855-9214874 | MS.gene041064:CDS | 40.0% | |
AGAGATTTCGTCTTGTGAAG+AGG | - | chr5.2:9212546-9212565 | None:intergenic | 40.0% | |
AGATCTTTCCATCTTGAAGC+TGG | - | chr5.2:9212631-9212650 | None:intergenic | 40.0% | |
CAACACAGAAACTTCTTTCG+GGG | + | chr5.2:9214470-9214489 | MS.gene041064:CDS | 40.0% | |
CAGATGCTGTCATTGAGAAA+TGG | + | chr5.2:9214228-9214247 | MS.gene041064:intron | 40.0% | |
GAAGGATAGGAAGACATTGA+TGG | - | chr5.2:9214441-9214460 | None:intergenic | 40.0% | |
GCTGTCAAAGAATTTCAGTC+GGG | + | chr5.2:9214804-9214823 | MS.gene041064:intron | 40.0% | |
TACATTCTCTGCCTTTGTCT+CGG | + | chr5.2:9214286-9214305 | MS.gene041064:CDS | 40.0% | |
TCCATCTTGAAGCTGGTTAA+TGG | - | chr5.2:9212624-9212643 | None:intergenic | 40.0% | |
TCCATTAACCAGCTTCAAGA+TGG | + | chr5.2:9212620-9212639 | MS.gene041064:CDS | 40.0% | |
TTATCAGTCTGTGACACACA+TGG | - | chr5.2:9213550-9213569 | None:intergenic | 40.0% | |
TTGAGAACCGCCTAATAGAT+TGG | - | chr5.2:9214698-9214717 | None:intergenic | 40.0% | |
! | GACATTCAAGTTTGCAGGAT+TGG | - | chr5.2:9214551-9214570 | None:intergenic | 40.0% |
!! | ATTGATGATGGGCTGAGAAT+AGG | - | chr5.2:9213782-9213801 | None:intergenic | 40.0% |
!! | CACTTTTGTCCTATTTTGGG+AGG | + | chr5.2:9213651-9213670 | MS.gene041064:intron | 40.0% |
!! | TTCTTGGTCTGTTTCTAGTG+TGG | + | chr5.2:9213076-9213095 | MS.gene041064:intron | 40.0% |
!! | TTGATGATGGGCTGAGAATA+GGG | - | chr5.2:9213781-9213800 | None:intergenic | 40.0% |
AACAAGTCTTCGCCGTGTAT+TGG | - | chr5.2:9214640-9214659 | None:intergenic | 45.0% | |
ACGGAGTTGAGTGAAGGAAA+CGG | + | chr5.2:9214315-9214334 | MS.gene041064:CDS | 45.0% | |
ACGTCTCCAACAATCTTCAG+AGG | + | chr5.2:9214521-9214540 | MS.gene041064:CDS | 45.0% | |
AGCTCTCAACCTCCCAAAAT+AGG | - | chr5.2:9213663-9213682 | None:intergenic | 45.0% | |
ATGAGTACGGAGTTGAGTGA+AGG | + | chr5.2:9214309-9214328 | MS.gene041064:CDS | 45.0% | |
CTTGGAGCTGAAGCTGTTTA+AGG | - | chr5.2:9213603-9213622 | None:intergenic | 45.0% | |
GAAGTTCCAACAAAGTCAGC+TGG | + | chr5.2:9213221-9213240 | MS.gene041064:CDS | 45.0% | |
TCTTCATCTTCTTCCATGCC+AGG | + | chr5.2:9212596-9212615 | MS.gene041064:CDS | 45.0% | |
TTGAGCAGAGAAGAAGGAGT+AGG | + | chr5.2:9213392-9213411 | MS.gene041064:intron | 45.0% | |
TTTAAATTTGCAGGAGGGCG+TGG | + | chr5.2:9213184-9213203 | MS.gene041064:intron | 45.0% | |
! | AAACAAGGAGCGTGAGATTG+TGG | - | chr5.2:9214774-9214793 | None:intergenic | 45.0% |
! | GGCTTACCTCTGAAGATTGT+TGG | - | chr5.2:9214530-9214549 | None:intergenic | 45.0% |
! | TGAAGCTGGTTAATGGATCC+TGG | - | chr5.2:9212617-9212636 | None:intergenic | 45.0% |
!! | GACTTGTTGAGCAGAGAAGA+AGG | + | chr5.2:9213386-9213405 | MS.gene041064:intron | 45.0% |
!! | GAGATGACGGGTTTAAGTTG+AGG | - | chr5.2:9213694-9213713 | None:intergenic | 45.0% |
!! | TTTGGTGCCTTGTAAGACAC+TGG | - | chr5.2:9213836-9213855 | None:intergenic | 45.0% |
!!! | GGAGACGTTTTTTCTGTGCT+GGG | - | chr5.2:9214509-9214528 | None:intergenic | 45.0% |
!!! | TGGAGACGTTTTTTCTGTGC+TGG | - | chr5.2:9214510-9214529 | None:intergenic | 45.0% |
AAGGAGTTGTCTAGGGGATG+AGG | - | chr5.2:9214372-9214391 | None:intergenic | 50.0% | |
ACAGCTTCAGCTCCAAGTAC+AGG | + | chr5.2:9213606-9213625 | MS.gene041064:CDS | 50.0% | |
ACTTCTTTCGGGGTGGAATC+TGG | + | chr5.2:9214480-9214499 | MS.gene041064:CDS | 50.0% | |
AGAATTTCAGTCGGGCGCAA+TGG | + | chr5.2:9214812-9214831 | MS.gene041064:CDS | 50.0% | |
CAAAGTCAGCTGGTGCTTCT+AGG | + | chr5.2:9213231-9213250 | MS.gene041064:CDS | 50.0% | |
CACAGAAACTTCTTTCGGGG+TGG | + | chr5.2:9214473-9214492 | MS.gene041064:CDS | 50.0% | |
GCCTTTGTCTCGGATGAGTA+CGG | + | chr5.2:9214296-9214315 | MS.gene041064:CDS | 50.0% | |
TCCGTACTCATCCGAGACAA+AGG | - | chr5.2:9214300-9214319 | None:intergenic | 50.0% | |
TCTTCCTCTTCTGTTGGAGC+AGG | + | chr5.2:9212695-9212714 | MS.gene041064:CDS | 50.0% | |
! | CTGGTTAATGGATCCTGGCA+TGG | - | chr5.2:9212612-9212631 | None:intergenic | 50.0% |
! | GAAGCACCAGCTGACTTTGT+TGG | - | chr5.2:9213230-9213249 | None:intergenic | 50.0% |
!! | ATGATGGGCTGAGAATAGGG+TGG | - | chr5.2:9213778-9213797 | None:intergenic | 50.0% |
CGCTCCTGACTGATCTCTTC+CGG | - | chr5.2:9214877-9214896 | None:intergenic | 55.0% | |
CGGAAGAGATCAGTCAGGAG+CGG | + | chr5.2:9214875-9214894 | MS.gene041064:CDS | 55.0% | |
GTTGCCGGAAGAGATCAGTC+AGG | + | chr5.2:9214870-9214889 | MS.gene041064:CDS | 55.0% | |
TCCTCCTGCTCCAACAGAAG+AGG | - | chr5.2:9212702-9212721 | None:intergenic | 55.0% | |
TCCTCTTCTGTTGGAGCAGG+AGG | + | chr5.2:9212698-9212717 | MS.gene041064:CDS | 55.0% | |
GTTGGAGCAGGAGGACTCAG+TGG | + | chr5.2:9212707-9212726 | MS.gene041064:CDS | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr5.2 | gene | 9212500 | 9214950 | 9212500 | ID=MS.gene041064 |
chr5.2 | mRNA | 9212500 | 9214950 | 9212500 | ID=MS.gene041064.t1;Parent=MS.gene041064 |
chr5.2 | exon | 9212500 | 9212763 | 9212500 | ID=MS.gene041064.t1.exon1;Parent=MS.gene041064.t1 |
chr5.2 | CDS | 9212500 | 9212763 | 9212500 | ID=cds.MS.gene041064.t1;Parent=MS.gene041064.t1 |
chr5.2 | exon | 9213197 | 9213304 | 9213197 | ID=MS.gene041064.t1.exon2;Parent=MS.gene041064.t1 |
chr5.2 | CDS | 9213197 | 9213304 | 9213197 | ID=cds.MS.gene041064.t1;Parent=MS.gene041064.t1 |
chr5.2 | exon | 9213400 | 9213465 | 9213400 | ID=MS.gene041064.t1.exon3;Parent=MS.gene041064.t1 |
chr5.2 | CDS | 9213400 | 9213465 | 9213400 | ID=cds.MS.gene041064.t1;Parent=MS.gene041064.t1 |
chr5.2 | exon | 9213562 | 9213627 | 9213562 | ID=MS.gene041064.t1.exon4;Parent=MS.gene041064.t1 |
chr5.2 | CDS | 9213562 | 9213627 | 9213562 | ID=cds.MS.gene041064.t1;Parent=MS.gene041064.t1 |
chr5.2 | exon | 9214231 | 9214542 | 9214231 | ID=MS.gene041064.t1.exon5;Parent=MS.gene041064.t1 |
chr5.2 | CDS | 9214231 | 9214542 | 9214231 | ID=cds.MS.gene041064.t1;Parent=MS.gene041064.t1 |
chr5.2 | exon | 9214637 | 9214718 | 9214637 | ID=MS.gene041064.t1.exon6;Parent=MS.gene041064.t1 |
chr5.2 | CDS | 9214637 | 9214718 | 9214637 | ID=cds.MS.gene041064.t1;Parent=MS.gene041064.t1 |
chr5.2 | exon | 9214805 | 9214950 | 9214805 | ID=MS.gene041064.t1.exon7;Parent=MS.gene041064.t1 |
chr5.2 | CDS | 9214805 | 9214950 | 9214805 | ID=cds.MS.gene041064.t1;Parent=MS.gene041064.t1 |
Gene Sequence |
Protein sequence |