AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene041094

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene041094.t1 MTR_5g017470 93.750 288 17 1 1 287 1 288 0.0 540
MS.gene041094.t1 MTR_5g010680 45.353 269 119 7 2 252 17 275 1.41e-64 206
MS.gene041094.t1 MTR_3g101870 42.366 262 118 6 2 234 17 274 2.00e-56 186
MS.gene041094.t1 MTR_1g100777 45.455 209 76 3 2 194 11 197 7.39e-52 172
MS.gene041094.t1 MTR_0020s0020 44.495 218 83 2 2 194 26 230 2.59e-51 172
MS.gene041094.t1 MTR_5g089170 40.164 244 117 6 2 235 18 242 6.39e-49 163
MS.gene041094.t1 MTR_7g091370 43.850 187 81 1 3 189 16 178 4.70e-48 160
MS.gene041094.t1 MTR_5g029680 47.514 181 69 3 1 181 24 178 2.91e-44 157
MS.gene041094.t1 MTR_7g095680 69.474 95 29 0 6 100 46 140 1.13e-43 152
MS.gene041094.t1 MTR_6g043060 58.407 113 44 1 8 117 21 133 1.28e-42 149
MS.gene041094.t1 MTR_8g087540 58.716 109 45 0 5 113 8 116 3.45e-41 147
MS.gene041094.t1 MTR_1g071360 63.636 99 36 0 7 105 30 128 4.75e-40 142
MS.gene041094.t1 MTR_1g071360 63.636 99 36 0 7 105 27 125 7.90e-40 142
MS.gene041094.t1 MTR_4g077970 41.500 200 85 4 9 208 12 179 7.02e-39 142
MS.gene041094.t1 MTR_8g083100 56.757 111 45 1 10 117 23 133 1.26e-38 142
MS.gene041094.t1 MTR_2g100680 62.136 103 39 0 7 109 29 131 1.38e-38 141
MS.gene041094.t1 MTR_3g104550 56.481 108 45 1 6 113 43 148 1.18e-37 137
MS.gene041094.t1 MTR_1g061170 62.626 99 37 0 3 101 43 141 1.33e-37 138
MS.gene041094.t1 MTR_2g100670 53.846 117 51 1 6 119 30 146 1.92e-37 135
MS.gene041094.t1 MTR_2g017890 39.894 188 80 4 9 193 15 172 2.22e-37 136
MS.gene041094.t1 MTR_1g102860 35.784 204 117 3 5 208 36 225 4.87e-37 134
MS.gene041094.t1 MTR_6g086805 58.824 102 42 0 1 102 3 104 8.19e-37 134
MS.gene041094.t1 MTR_2g100670 53.846 117 51 1 6 119 138 254 1.48e-36 135
MS.gene041094.t1 MTR_4g088900 36.139 202 103 5 6 203 30 209 5.25e-35 125
MS.gene041094.t1 MTR_8g105780 44.382 178 65 5 8 181 21 168 2.57e-34 128
MS.gene041094.t1 MTR_2g085115 55.752 113 31 5 70 179 39 135 8.32e-25 97.1
MS.gene041094.t1 MTR_5g047190 45.361 97 46 3 17 106 1 97 5.59e-19 80.5
MS.gene041094.t1 MTR_4g045757 60.345 58 23 0 9 66 14 71 3.00e-18 77.8
MS.gene041094.t1 MTR_3g091000 61.538 52 19 1 154 204 27 78 2.73e-12 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene041094.t1 AT4G36990 50.333 300 113 8 2 287 7 284 3.38e-82 249
MS.gene041094.t1 AT5G62020 49.756 205 97 3 2 202 16 218 1.17e-55 182
MS.gene041094.t1 AT4G11660 42.222 270 115 8 2 233 52 318 6.66e-54 179
MS.gene041094.t1 AT1G46264 44.444 216 91 5 4 197 29 237 1.14e-53 178
MS.gene041094.t1 AT2G41690 45.989 187 89 3 7 190 38 215 3.35e-48 161
MS.gene041094.t1 AT1G32330 48.066 181 60 3 6 181 34 185 6.17e-47 164
MS.gene041094.t1 AT1G32330 48.619 181 59 4 6 181 34 185 6.70e-47 164
MS.gene041094.t1 AT4G17750 69.388 98 30 0 5 102 48 145 2.76e-44 157
MS.gene041094.t1 AT2G26150 40.306 196 93 2 5 194 40 217 3.80e-42 148
MS.gene041094.t1 AT2G26150 40.306 196 93 2 5 194 40 217 3.80e-42 148
MS.gene041094.t1 AT3G22830 38.318 214 124 3 5 217 57 263 4.64e-42 149
MS.gene041094.t1 AT3G02990 40.625 256 113 8 5 258 19 237 6.38e-41 147
MS.gene041094.t1 AT4G13980 62.000 100 38 0 10 109 24 123 6.57e-41 147
MS.gene041094.t1 AT3G24520 38.426 216 83 4 8 216 16 188 1.21e-39 141
MS.gene041094.t1 AT5G16820 69.565 92 28 0 9 100 27 118 2.19e-39 144
MS.gene041094.t1 AT5G16820 69.565 92 28 0 9 100 27 118 2.19e-39 144
MS.gene041094.t1 AT5G43840 56.881 109 47 0 5 113 15 123 8.46e-39 137
MS.gene041094.t1 AT3G51910 58.654 104 42 1 6 109 26 128 3.98e-38 135
MS.gene041094.t1 AT5G03720 42.246 187 82 3 9 189 55 221 4.81e-38 139
MS.gene041094.t1 AT5G03720 42.246 187 82 3 9 189 55 221 4.81e-38 139
MS.gene041094.t1 AT5G54070 60.870 92 36 0 8 99 70 161 8.62e-37 134
MS.gene041094.t1 AT3G63350 57.732 97 41 0 3 99 22 118 5.27e-35 127
MS.gene041094.t1 AT4G18880 55.172 116 52 0 5 120 11 126 2.06e-33 126
MS.gene041094.t1 AT1G67970 57.273 110 44 2 8 116 18 125 2.63e-33 125
MS.gene041094.t1 AT5G45710 53.279 122 50 2 5 119 9 130 7.59e-33 124
MS.gene041094.t1 AT5G45710 53.279 122 50 2 5 119 9 130 7.59e-33 124
MS.gene041094.t1 AT4G18870 44.211 95 53 0 2 96 139 233 2.60e-22 94.4
MS.gene041094.t1 AT4G18870 45.745 94 46 3 5 96 9 99 5.78e-20 87.8
MS.gene041094.t1 AT1G77570 40.909 88 47 3 10 93 27 113 1.07e-13 67.4

Find 49 sgRNAs with CRISPR-Local

Find 114 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAAAGCTTGTGCCAGATAAA+TGG 0.251473 5.2:+9589551 MS.gene041094:CDS
TTTGCAAATTCCCATTTATC+TGG 0.289664 5.2:-9589562 None:intergenic
TTGTTGTGCTTAAAATATTT+AGG 0.304096 5.2:-9588137 None:intergenic
GTTTGAAATTGTTTGGTGTT+TGG 0.347895 5.2:+9590019 MS.gene041094:CDS
GGATCCTGCTCCGTCGTTGC+CGG 0.352068 5.2:-9589713 None:intergenic
ATTTATCTGGCACAAGCTTT+CGG 0.357484 5.2:-9589549 None:intergenic
CCGTCGTTGCCGGAGTTTGA+TGG 0.360239 5.2:-9589703 None:intergenic
GTTGTTGTTTCCACTGATCC+AGG 0.401148 5.2:-9589766 None:intergenic
ATTATGCGATCGATTTGATC+TGG 0.408543 5.2:-9589928 None:intergenic
AGAGATTGTTTGAAATTGTT+TGG 0.415249 5.2:+9590012 MS.gene041094:CDS
TGAGTTGGAGGAAGAGGTTG+AGG 0.450915 5.2:-9589737 None:intergenic
TGAAACCTTGAGTTGTGAAT+TGG 0.453054 5.2:+9589843 MS.gene041094:CDS
AAAGCTTGTGCCAGATAAAT+GGG 0.453955 5.2:+9589552 MS.gene041094:CDS
CTCGATAAGTTAACACATTG+AGG 0.469755 5.2:-9589793 None:intergenic
AATGTCGCAGCGGTCGGCGC+CGG 0.469760 5.2:+9587989 None:intergenic
TGGAGAGTTGTCATTGATGC+TGG 0.489530 5.2:-9589683 None:intergenic
ACAACCGTCGTCACAACCCC+TGG 0.491280 5.2:+9589648 MS.gene041094:CDS
TCTAAAAGACAATTTAAATG+TGG 0.501767 5.2:+9589903 MS.gene041094:CDS
CTAAAAGACAATTTAAATGT+GGG 0.505450 5.2:+9589904 MS.gene041094:CDS
TATCGGTGAGGAGGTGTTTG+TGG 0.509612 5.2:-9589603 None:intergenic
AACTCCGGCAACGACGGAGC+AGG 0.525429 5.2:+9589709 MS.gene041094:CDS
GTTGGAGGAAGAGGTTGAGG+TGG 0.526221 5.2:-9589734 None:intergenic
TTGTTGTTTCCACTGATCCA+GGG 0.529235 5.2:-9589765 None:intergenic
TGGTGGGCCTCGAGCTAAAG+TGG 0.533968 5.2:+9590110 MS.gene041094:CDS
ACGTGCCAATTCACAACTCA+AGG 0.543571 5.2:-9589848 None:intergenic
CGACGGATGATGTGATATCA+TGG 0.550146 5.2:+9588054 MS.gene041094:CDS
GTTGGTGAAGTTGAAGAAAG+TGG 0.559506 5.2:+9589988 MS.gene041094:CDS
AAAGAAACAATGCGAAGAGT+TGG 0.565353 5.2:+9589873 MS.gene041094:CDS
GAGGCCCACCATAGCTCAGT+TGG 0.566640 5.2:-9590098 None:intergenic
GCTTCCAGGGGTTGTGACGA+CGG 0.568930 5.2:-9589652 None:intergenic
TTGTGACGACGGTTGTGAGA+TGG 0.569926 5.2:-9589641 None:intergenic
GACAACTCTCCATCAAACTC+CGG 0.573360 5.2:+9589694 MS.gene041094:CDS
CCATCAAACTCCGGCAACGA+CGG 0.576121 5.2:+9589703 MS.gene041094:CDS
GTTGTGAACATGATGAAAAG+TGG 0.578148 5.2:+9590165 MS.gene041094:CDS
TTTGTTGAAGACGTATCAGA+TGG 0.581317 5.2:+9588019 MS.gene041094:CDS
GAAATAAGCAATAAGAAGAG+AGG 0.597803 5.2:+9590066 MS.gene041094:CDS
TTGTTACCCACTTTAGCTCG+AGG 0.613620 5.2:-9590117 None:intergenic
GGCGTTTGATATCGGTGAGG+AGG 0.622756 5.2:-9589612 None:intergenic
TGTGAAGACCAACTGAGCTA+TGG 0.623213 5.2:+9590090 MS.gene041094:CDS
GAATCTGTTCAAAATGCGGT+TGG 0.630106 5.2:+9589970 MS.gene041094:CDS
GAAGACCAACTGAGCTATGG+TGG 0.630267 5.2:+9590093 MS.gene041094:CDS
GTGATATCATGGAGTGAGAG+TGG 0.634834 5.2:+9588065 MS.gene041094:CDS
GGTGGGCCTCGAGCTAAAGT+GGG 0.645793 5.2:+9590111 MS.gene041094:CDS
GTTGAAGACGTATCAGATGG+TGG 0.648048 5.2:+9588022 MS.gene041094:CDS
TTGTGAATCTGTTCAAAATG+CGG 0.658508 5.2:+9589966 MS.gene041094:CDS
GAACATGATGAAAAGTGGCA+AGG 0.659767 5.2:+9590170 MS.gene041094:CDS
AAGACCAACTGAGCTATGGT+GGG 0.668381 5.2:+9590094 MS.gene041094:CDS
GCAAACGAAAATTTCAAACG+AGG 0.682155 5.2:+9589580 MS.gene041094:CDS
TGCGGCGTTTGATATCGGTG+AGG 0.683931 5.2:-9589615 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATAAATTATTTTTATTTTAA+TGG + chr5.2:9588533-9588552 MS.gene041094:intron 0.0%
!! AAATTATCCTTATTAAATAT+TGG + chr5.2:9589228-9589247 MS.gene041094:intron 10.0%
!!! AATTATTTTTTAGCAATTTT+TGG + chr5.2:9588320-9588339 MS.gene041094:intron 10.0%
!!! ATTATTTTTTAGCAATTTTT+GGG + chr5.2:9588321-9588340 MS.gene041094:intron 10.0%
!!! TATTTTAACAAATAGTAAAT+AGG - chr5.2:9588693-9588712 None:intergenic 10.0%
!! AAACTAACCAATATTTAATA+AGG - chr5.2:9589238-9589257 None:intergenic 15.0%
!! AAATTATAATACACTTTCTT+AGG - chr5.2:9588996-9589015 None:intergenic 15.0%
!! AATTATAATACACTTTCTTA+GGG - chr5.2:9588995-9589014 None:intergenic 15.0%
!! AATTATCTTAAACTAATCAA+AGG - chr5.2:9588266-9588285 None:intergenic 15.0%
!!! TGTTCAAATATTTTGATTTT+AGG + chr5.2:9588575-9588594 MS.gene041094:intron 15.0%
!!! TTATTTTTTAGCAATTTTTG+GGG + chr5.2:9588322-9588341 MS.gene041094:intron 15.0%
!! AATGATTAAAAGAAAGAGAA+TGG + chr5.2:9589195-9589214 MS.gene041094:intron 20.0%
!! AGAAAAAGTTATTATTGCAT+TGG + chr5.2:9589315-9589334 MS.gene041094:intron 20.0%
!! CTAAAAGACAATTTAAATGT+GGG + chr5.2:9589904-9589923 MS.gene041094:CDS 20.0%
!! TCTAAAAGACAATTTAAATG+TGG + chr5.2:9589903-9589922 MS.gene041094:CDS 20.0%
!! TTGTTGTGCTTAAAATATTT+AGG - chr5.2:9588140-9588159 None:intergenic 20.0%
!!! TAGTTTTAAAAGCAATACTT+CGG + chr5.2:9589252-9589271 MS.gene041094:intron 20.0%
! ACATCGAAAATGAATTTACT+TGG + chr5.2:9588752-9588771 MS.gene041094:intron 25.0%
! CAATACTTTCCTTCTAATTA+GGG - chr5.2:9588665-9588684 None:intergenic 25.0%
! CATGTTCATGAAAAACTAAA+AGG - chr5.2:9588220-9588239 None:intergenic 25.0%
!! AGAGATTGTTTGAAATTGTT+TGG + chr5.2:9590012-9590031 MS.gene041094:CDS 25.0%
!!! AAACGACACTCATTTTAAAA+CGG - chr5.2:9589146-9589165 None:intergenic 25.0%
!!! GATGATTTACTTTTAGTGTT+CGG + chr5.2:9589093-9589112 MS.gene041094:intron 25.0%
!!! TTGGTTTTATCTTAACACTT+TGG + chr5.2:9589480-9589499 MS.gene041094:intron 25.0%
!!! TTTAAAATGAGTGTCGTTTT+AGG + chr5.2:9589147-9589166 MS.gene041094:intron 25.0%
AGAAAACGTGCTAATATTTG+AGG - chr5.2:9589456-9589475 None:intergenic 30.0%
AGTAGAATACCCTAATTAGA+AGG + chr5.2:9588653-9588672 MS.gene041094:intron 30.0%
ATGAAAAACTAAAAGGAGAG+AGG - chr5.2:9588213-9588232 None:intergenic 30.0%
CACATCTTTACAATTATGCA+CGG - chr5.2:9589064-9589083 None:intergenic 30.0%
CCAATACTTTCCTTCTAATT+AGG - chr5.2:9588666-9588685 None:intergenic 30.0%
GAAAACGTGCTAATATTTGA+GGG - chr5.2:9589455-9589474 None:intergenic 30.0%
GAAATAAGCAATAAGAAGAG+AGG + chr5.2:9590066-9590085 MS.gene041094:CDS 30.0%
TGAAAAACTAAAAGGAGAGA+GGG - chr5.2:9588212-9588231 None:intergenic 30.0%
TGAGAAAATGCTAATTACCA+TGG + chr5.2:9589506-9589525 MS.gene041094:intron 30.0%
TGATACGTCTTCAACAAAAA+CGG - chr5.2:9588017-9588036 None:intergenic 30.0%
TTGGTAGATCACAATGAATT+AGG + chr5.2:9588771-9588790 MS.gene041094:intron 30.0%
TTGTGAATCTGTTCAAAATG+CGG + chr5.2:9589966-9589985 MS.gene041094:CDS 30.0%
TTTGCAAATTCCCATTTATC+TGG - chr5.2:9589565-9589584 None:intergenic 30.0%
! ATTAGCACGTTTTCTTTTCT+TGG + chr5.2:9589461-9589480 MS.gene041094:intron 30.0%
! CCTAATTAGAAGGAAAGTAT+TGG + chr5.2:9588663-9588682 MS.gene041094:intron 30.0%
! CTAATTAGGGTATTCTACTT+CGG - chr5.2:9588652-9588671 None:intergenic 30.0%
!! ATTTACTTTTAGTGTTCGGA+TGG + chr5.2:9589097-9589116 MS.gene041094:intron 30.0%
!! GTTTGAAATTGTTTGGTGTT+TGG + chr5.2:9590019-9590038 MS.gene041094:CDS 30.0%
!!! AATTTTTGGGGTTCATAACA+AGG + chr5.2:9588334-9588353 MS.gene041094:intron 30.0%
!!! TGGAGTATTTTAGTGTTCAA+TGG + chr5.2:9589405-9589424 MS.gene041094:intron 30.0%
AAAGAAACAATGCGAAGAGT+TGG + chr5.2:9589873-9589892 MS.gene041094:CDS 35.0%
AAAGCTTGTGCCAGATAAAT+GGG + chr5.2:9589552-9589571 MS.gene041094:CDS 35.0%
AGTGTTCAATGGTTTACTCT+TGG + chr5.2:9589416-9589435 MS.gene041094:intron 35.0%
ATTTATCTGGCACAAGCTTT+CGG - chr5.2:9589552-9589571 None:intergenic 35.0%
CTCGATAAGTTAACACATTG+AGG - chr5.2:9589796-9589815 None:intergenic 35.0%
GCAAACGAAAATTTCAAACG+AGG + chr5.2:9589580-9589599 MS.gene041094:CDS 35.0%
GGACATCGACGTTAAAAAAT+TGG - chr5.2:9589043-9589062 None:intergenic 35.0%
GTTGTGAACATGATGAAAAG+TGG + chr5.2:9590165-9590184 MS.gene041094:CDS 35.0%
TTTGTTGAAGACGTATCAGA+TGG + chr5.2:9588019-9588038 MS.gene041094:CDS 35.0%
! ACCATGGTTTTTGAATTTGC+AGG + chr5.2:9589522-9589541 MS.gene041094:intron 35.0%
! CCATGGTTTTTGAATTTGCA+GGG + chr5.2:9589523-9589542 MS.gene041094:intron 35.0%
! GGTTTTCAATCTTTTCGTGT+AGG - chr5.2:9588624-9588643 None:intergenic 35.0%
! GTAGTGTGCAGAGTATTAAT+TGG + chr5.2:9589277-9589296 MS.gene041094:intron 35.0%
! TGAAACCTTGAGTTGTGAAT+TGG + chr5.2:9589843-9589862 MS.gene041094:CDS 35.0%
! TGTGCAGAGTATTAATTGGA+GGG + chr5.2:9589281-9589300 MS.gene041094:intron 35.0%
!! AAGCGACACTCATTTTGAAA+CGG + chr5.2:9589381-9589400 MS.gene041094:intron 35.0%
!! ATTATGCGATCGATTTGATC+TGG - chr5.2:9589931-9589950 None:intergenic 35.0%
!!! GAAACATGCTGATTTTGCAA+GGG + chr5.2:9588106-9588125 MS.gene041094:CDS 35.0%
!!! GACACTCATTTTAAAACGGA+GGG - chr5.2:9589142-9589161 None:intergenic 35.0%
CCCTGCAAATTCAAAAACCA+TGG - chr5.2:9589526-9589545 None:intergenic 40.0%
GAAAGCTTGTGCCAGATAAA+TGG + chr5.2:9589551-9589570 MS.gene041094:CDS 40.0%
GAACATGATGAAAAGTGGCA+AGG + chr5.2:9590170-9590189 MS.gene041094:CDS 40.0%
GAATCTGTTCAAAATGCGGT+TGG + chr5.2:9589970-9589989 MS.gene041094:CDS 40.0%
! GTGTGCAGAGTATTAATTGG+AGG + chr5.2:9589280-9589299 MS.gene041094:intron 40.0%
! GTTGGTGAAGTTGAAGAAAG+TGG + chr5.2:9589988-9590007 MS.gene041094:CDS 40.0%
!! TTGTTGTTTCCACTGATCCA+GGG - chr5.2:9589768-9589787 None:intergenic 40.0%
!!! CGACACTCATTTTAAAACGG+AGG - chr5.2:9589143-9589162 None:intergenic 40.0%
!!! GACACTCATTTTGAAACGGA+TGG + chr5.2:9589385-9589404 MS.gene041094:intron 40.0%
!!! GGAAACATGCTGATTTTGCA+AGG + chr5.2:9588105-9588124 MS.gene041094:CDS 40.0%
!!! GTGGTGAAAGTTTTGTTGTG+TGG + chr5.2:9588084-9588103 MS.gene041094:CDS 40.0%
!!! GTTTTTTGAGTTGGAGGAAG+AGG - chr5.2:9589746-9589765 None:intergenic 40.0%
!!! TGATCCAGGGTTTTTTGAGT+TGG - chr5.2:9589755-9589774 None:intergenic 40.0%
AAGACCAACTGAGCTATGGT+GGG + chr5.2:9590094-9590113 MS.gene041094:CDS 45.0%
ACGTGCCAATTCACAACTCA+AGG - chr5.2:9589851-9589870 None:intergenic 45.0%
CGACGGATGATGTGATATCA+TGG + chr5.2:9588054-9588073 MS.gene041094:CDS 45.0%
CTCAAAAAACCCTGGATCAG+TGG + chr5.2:9589756-9589775 MS.gene041094:CDS 45.0%
GACAACTCTCCATCAAACTC+CGG + chr5.2:9589694-9589713 MS.gene041094:CDS 45.0%
GGGTATTCTACTTCGGTAGA+AGG - chr5.2:9588645-9588664 None:intergenic 45.0%
GTGATATCATGGAGTGAGAG+TGG + chr5.2:9588065-9588084 MS.gene041094:CDS 45.0%
GTTGAAGACGTATCAGATGG+TGG + chr5.2:9588022-9588041 MS.gene041094:CDS 45.0%
TCCTCCAACTCAAAAAACCC+TGG + chr5.2:9589748-9589767 MS.gene041094:CDS 45.0%
TGGAGAGTTGTCATTGATGC+TGG - chr5.2:9589686-9589705 None:intergenic 45.0%
TGTGAAGACCAACTGAGCTA+TGG + chr5.2:9590090-9590109 MS.gene041094:CDS 45.0%
! GGTTTTGCGGCGTTTGATAT+CGG - chr5.2:9589623-9589642 None:intergenic 45.0%
! TTGTTACCCACTTTAGCTCG+AGG - chr5.2:9590120-9590139 None:intergenic 45.0%
!! ACGGTTGTGAGATGGTTTTG+CGG - chr5.2:9589636-9589655 None:intergenic 45.0%
!! GTTGTTGTTTCCACTGATCC+AGG - chr5.2:9589769-9589788 None:intergenic 45.0%
!!! CTGGTTTTTTCAGCTTCCAG+GGG - chr5.2:9589667-9589686 None:intergenic 45.0%
!!! GATGGTGGATGATTTTGCGA+CGG + chr5.2:9588037-9588056 MS.gene041094:CDS 45.0%
!!! GCTGGTTTTTTCAGCTTCCA+GGG - chr5.2:9589668-9589687 None:intergenic 45.0%
!!! TCCAGGGTTTTTTGAGTTGG+AGG - chr5.2:9589752-9589771 None:intergenic 45.0%
!!! TGCTGGTTTTTTCAGCTTCC+AGG - chr5.2:9589669-9589688 None:intergenic 45.0%
GAAGACCAACTGAGCTATGG+TGG + chr5.2:9590093-9590112 MS.gene041094:CDS 50.0%
GTCTTCAACAAAAACGGCGC+CGG - chr5.2:9588011-9588030 None:intergenic 50.0%
TTGTGACGACGGTTGTGAGA+TGG - chr5.2:9589644-9589663 None:intergenic 50.0%
! TGAGTTGGAGGAAGAGGTTG+AGG - chr5.2:9589740-9589759 None:intergenic 50.0%
!! TATCGGTGAGGAGGTGTTTG+TGG - chr5.2:9589606-9589625 None:intergenic 50.0%
CCATCAAACTCCGGCAACGA+CGG + chr5.2:9589703-9589722 MS.gene041094:CDS 55.0%
GGCGTTTGATATCGGTGAGG+AGG - chr5.2:9589615-9589634 None:intergenic 55.0%
GTTGGAGGAAGAGGTTGAGG+TGG - chr5.2:9589737-9589756 None:intergenic 55.0%
TGCGGCGTTTGATATCGGTG+AGG - chr5.2:9589618-9589637 None:intergenic 55.0%
ACAACCGTCGTCACAACCCC+TGG + chr5.2:9589648-9589667 MS.gene041094:CDS 60.0%
CCGTCGTTGCCGGAGTTTGA+TGG - chr5.2:9589706-9589725 None:intergenic 60.0%
GAGGCCCACCATAGCTCAGT+TGG - chr5.2:9590101-9590120 None:intergenic 60.0%
GCTTCCAGGGGTTGTGACGA+CGG - chr5.2:9589655-9589674 None:intergenic 60.0%
GGTGGGCCTCGAGCTAAAGT+GGG + chr5.2:9590111-9590130 MS.gene041094:CDS 60.0%
! TGGTGGGCCTCGAGCTAAAG+TGG + chr5.2:9590110-9590129 MS.gene041094:CDS 60.0%
AACTCCGGCAACGACGGAGC+AGG + chr5.2:9589709-9589728 MS.gene041094:CDS 65.0%
GGATCCTGCTCCGTCGTTGC+CGG - chr5.2:9589716-9589735 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr5.2 gene 9587990 9590203 9587990 ID=MS.gene041094
chr5.2 mRNA 9587990 9590203 9587990 ID=MS.gene041094.t1;Parent=MS.gene041094
chr5.2 exon 9587990 9588193 9587990 ID=MS.gene041094.t1.exon1;Parent=MS.gene041094.t1
chr5.2 CDS 9587990 9588193 9587990 ID=cds.MS.gene041094.t1;Parent=MS.gene041094.t1
chr5.2 exon 9589544 9590203 9589544 ID=MS.gene041094.t1.exon2;Parent=MS.gene041094.t1
chr5.2 CDS 9589544 9590203 9589544 ID=cds.MS.gene041094.t1;Parent=MS.gene041094.t1
Gene Sequence

>MS.gene041094

ATGTCGCAGCGGTCGGCGCCGGCGCCGTTTTTGTTGAAGACGTATCAGATGGTGGATGATTTTGCGACGGATGATGTGATATCATGGAGTGAGAGTGGTGAAAGTTTTGTTGTGTGGAAACATGCTGATTTTGCAAGGGATTTGCTTCCTAAATATTTTAAGCACAACAATTTCTCTAGCTTTGTTCGTCAGCTCAATACTTATGTAAGTTCTTTATTTCCCTCTCTCCTTTTAGTTTTTCATGAACATGATTCATTCTTGCATGTTTTGCAGCCTTTGATTAGTTTAAGATAATTTCTAACTGCTAATGTTTTTTTTTTAGAAAATACAAATTATTTTTTAGCAATTTTTGGGGTTCATAACAAGGTAATTTGTTTGTTTATGCTTTACTTTTTTCACAAACAAGCAAGTATAAAATGACATATGTTGTTCACACAAGCAAGTCTTGTACGAACACAACTACAAATCAAAAGTATTTAAATACACTTATATAAAATAAAAATATTAAAAGAAGATAAAATTAAATGATGTTAATTGATGTGAATAAATTATTTTTATTTTAATGGATTTTATTTTGTATGAGTATGTTCAAATATTTTGATTTTAGGTTGTTTCTATAGAAAATTTGCTGCCTACACGAAAAGATTGAAAACCTTCTACCGAAGTAGAATACCCTAATTAGAAGGAAAGTATTGGTCATCCTATTTACTATTTGTTAAAATATCAAACAAGTGATTTTCTTTTATAGAGTTCAACTTTGATACATCGAAAATGAATTTACTTGGTAGATCACAATGAATTAGGTGTGATGTTAGATGTAATTAAGTCAATCGTTTTCAATAATTTTACTATTATGTTTGATTTTATAAATATATATTGATATTGTATATCAATTAAATCTATTAAGTCTTCAACTTCTACGCATTGACATTATAGAATTGTTTTACATATAATCAATTAAATTACATCATATAAACATTTGTAGAGATATTTTATAAATTGCCCTAAGAAAGTGTATTATAATTTGATTTGATTGTATGCATGTGCAAACCAATTTTTTAACGTCGATGTCCGTGCATAATTGTAAAGATGTGTTATGTAAAGATGATTTACTTTTAGTGTTCGGATGGTAGATCACAATCAATTACTCCCTCCGTTTTAAAATGAGTGTCGTTTTAGGTGTTTACACACATATTAAGAAATGCAATGATTAAAAGAAAGAGAATGGTTATTTTACTAAATTATCCTTATTAAATATTGGTTAGTTTTAAAAGCAATACTTCGGAAGTAGTGTGCAGAGTATTAATTGGAGGGTACAATTGAAAAGAAAAAGTTATTATTGCATTGGAAACTGAAAGCGACATTCATTTTGAAACAAATTTTTTTGACTAAAGCGACACTCATTTTGAAACGGATGGAGTATTTTAGTGTTCAATGGTTTACTCTTGGAGAGATGTTTTTTCCCTCAAATATTAGCACGTTTTCTTTTCTTGGTTTTATCTTAACACTTTGGCAATGAGAAAATGCTAATTACCATGGTTTTTGAATTTGCAGGGTTTCCGAAAGCTTGTGCCAGATAAATGGGAATTTGCAAACGAAAATTTCAAACGAGGCCACAAACACCTCCTCACCGATATCAAACGCCGCAAAACCATCTCACAACCGTCGTCACAACCCCTGGAAGCTGAAAAAACCAGCATCAATGACAACTCTCCATCAAACTCCGGCAACGACGGAGCAGGATCCACCTCAACCTCTTCCTCCAACTCAAAAAACCCTGGATCAGTGGAAACAACAACACTTCCTCAATGTGTTAACTTATCGAGCGAAAATGAGAAACTAAAAAAAGACAATGAAACCTTGAGTTGTGAATTGGCACGTGCAAAGAAACAATGCGAAGAGTTGGTGACTTTTCTAAAAGACAATTTAAATGTGGGTCCAGATCAAATCGATCGCATAATGAAGCAACAAGAAAATTGTGAATCTGTTCAAAATGCGGTTGGTGAAGTTGAAGAAAGTGGAAGAGATTGTTTGAAATTGTTTGGTGTTTGGTTGAAAGAAGAAAATTACACACAAGAAATAAGCAATAAGAAGAGAGGTTGTGAAGACCAACTGAGCTATGGTGGGCCTCGAGCTAAAGTGGGTAACAATGTTGTTGACTTTAGTGCTGTTAATGTTGTGAACATGATGAAAAGTGGCAAGGTTTGTAACTGA
Protein sequence

>MS.gene041094.t1

MSQRSAPAPFLLKTYQMVDDFATDDVISWSESGESFVVWKHADFARDLLPKYFKHNNFSSFVRQLNTYGFRKLVPDKWEFANENFKRGHKHLLTDIKRRKTISQPSSQPLEAEKTSINDNSPSNSGNDGAGSTSTSSSNSKNPGSVETTTLPQCVNLSSENEKLKKDNETLSCELARAKKQCEELVTFLKDNLNVGPDQIDRIMKQQENCESVQNAVGEVEESGRDCLKLFGVWLKEENYTQEISNKKRGCEDQLSYGGPRAKVGNNVVDFSAVNVVNMMKSGKVCN