AlfalfaGEDB | MS.gene041121

M. sativa cultivar XinJiangDaYe / MS.gene041121

KEGG: K00924
GO: GO:0000166 GO:0003674 GO:0003824 GO:0004672 GO:0005488 GO:0005509 GO:0005524 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019538 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043169 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0046872 GO:0071704 GO:0097159 GO:0097367 GO:0140096 GO:1901265 GO:1901363 GO:1901564
PFAM: PF00069.28

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene041121.t1	XP_003611786.1	98.1	588	9	2	1	587	1	587	0.00E+00	1094

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene041121.t1	Q9SCS2	74.0	604	133	5	1	585	1	599	5.7e-250	864.8

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene041121.t1	G7K819	98.1	588	9	2	1	587	1	587	0.0e+00	1094.0

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene041121.t1	MTR_5g017830	98.129	588	9	2	1	587	1	587	0.0	1184
MS.gene041121.t1	MTR_8g079790	76.846	596	114	5	1	587	1	581	0.0	927
MS.gene041121.t1	MTR_4g086660	73.422	602	134	6	1	587	1	591	0.0	859
MS.gene041121.t1	MTR_7g089480	69.231	546	148	4	53	580	45	588	0.0	789
MS.gene041121.t1	MTR_7g118020	61.513	595	202	9	1	578	1	585	0.0	697
MS.gene041121.t1	MTR_3g092230	68.261	460	142	3	119	578	123	578	0.0	667
MS.gene041121.t1	MTR_5g022030	50.216	462	221	5	123	580	88	544	4.35e-153	451
MS.gene041121.t1	MTR_5g022030	52.133	422	195	4	123	540	88	506	6.56e-150	442
MS.gene041121.t1	MTR_5g092810	39.869	459	259	7	134	586	92	539	1.11e-117	360
MS.gene041121.t1	MTR_5g089320	40.492	447	253	6	134	576	68	505	1.80e-117	358

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MS.gene041121.t1	AT3G50530	73.806	607	133	6	1	587	1	601	904
MS.gene041121.t1	AT3G50530	70.219	638	133	7	1	587	1	632	890
MS.gene041121.t1	AT3G19100	66.227	607	177	5	1	587	1	599	804
MS.gene041121.t1	AT1G49580	65.728	604	176	5	1	580	1	597	798
MS.gene041121.t1	AT2G41140	66.373	568	173	5	34	585	10	575	786
MS.gene041121.t1	AT3G56760	63.439	599	182	7	1	585	1	576	774
MS.gene041121.t1	AT2G46700	65.517	493	165	3	88	578	95	584	655
MS.gene041121.t1	AT5G24430	56.514	591	236	7	1	578	1	583	638
MS.gene041121.t1	AT3G49370	56.197	589	240	8	1	578	1	582	615
MS.gene041121.t1	AT2G46700	67.980	406	127	2	173	578	1	403	563

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Find 119 sgRNAs with CRISPR-Local

Find 278 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATATTGAGAGCTTTGAA+TGG	0.495326	5.2:-9955302	MS.gene041121:CDS
AAACTTCAACGGAGCCACGC+CGG	0.633868	5.2:+9956366	None:intergenic
AAACTTGGAAAATATAAAAG+CGG	0.643886	5.2:-9953059	MS.gene041121:intron
AAATGCAACAGATGCAATGA+AGG	0.515727	5.2:-9952944	MS.gene041121:CDS
AAATTGAAGCACTCGACCAC+TGG	0.463660	5.2:-9952729	MS.gene041121:CDS
AACGTGCACGCTTCTCCCAG+TGG	0.649685	5.2:+9952713	None:intergenic
AACTGAAATAATCAGGAGCT+TGG	0.420518	5.2:-9952257	MS.gene041121:intron
AACTGAAGGCTATAGACTTT+GGG	0.402040	5.2:-9954282	MS.gene041121:CDS
AAGAACAGCATGAACAGGAA+TGG	0.566904	5.2:+9952223	None:intergenic
AAGAATTGATGAGCTGGACT+TGG	0.447059	5.2:+9956473	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAACACAACGGACATATT+TGG	+	chr5.2:9953403-9953422	None:intergenic	30.0%
AAGTTTCTTGCGATTATTGT+TGG	-	chr5.2:9954935-9954954	MS.gene041121:intron	30.0%
AGCATCTCCATGATAATAAA+TGG	+	chr5.2:9954585-9954604	None:intergenic	30.0%
AGCTAGAAAAGTAGATTATG+AGG	+	chr5.2:9956255-9956274	None:intergenic	30.0%
AGGACATACATTTCAATTAG+AGG	+	chr5.2:9955214-9955233	None:intergenic	30.0%
AGTAGAATATGGCTATATGA+TGG	-	chr5.2:9954354-9954373	MS.gene041121:intron	30.0%
ATATCTACTTCCAAAATGCT+TGG	+	chr5.2:9952509-9952528	None:intergenic	30.0%
ATCGCAAATTTATGTATCAG+TGG	+	chr5.2:9952723-9952742	None:intergenic	30.0%
ATCTGTTGCATTTACTGAAA+AGG	+	chr5.2:9955838-9955857	None:intergenic	30.0%
ATTGATACAAATAATCTGGG+TGG	-	chr5.2:9955967-9955986	MS.gene041121:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5.2	gene	9952127	9956684	9952127	ID=MS.gene041121
chr5.2	mRNA	9952127	9956684	9952127	ID=MS.gene041121.t1;Parent=MS.gene041121
chr5.2	exon	9956169	9956684	9956169	ID=MS.gene041121.t1.exon1;Parent=MS.gene041121.t1
chr5.2	CDS	9956169	9956684	9956169	ID=cds.MS.gene041121.t1;Parent=MS.gene041121.t1
chr5.2	exon	9955236	9955366	9955236	ID=MS.gene041121.t1.exon2;Parent=MS.gene041121.t1
chr5.2	CDS	9955236	9955366	9955236	ID=cds.MS.gene041121.t1;Parent=MS.gene041121.t1
chr5.2	exon	9955009	9955050	9955009	ID=MS.gene041121.t1.exon3;Parent=MS.gene041121.t1
chr5.2	CDS	9955009	9955050	9955009	ID=cds.MS.gene041121.t1;Parent=MS.gene041121.t1
chr5.2	exon	9954780	9954888	9954780	ID=MS.gene041121.t1.exon4;Parent=MS.gene041121.t1
chr5.2	CDS	9954780	9954888	9954780	ID=cds.MS.gene041121.t1;Parent=MS.gene041121.t1
chr5.2	exon	9954260	9954338	9954260	ID=MS.gene041121.t1.exon5;Parent=MS.gene041121.t1
chr5.2	CDS	9954260	9954338	9954260	ID=cds.MS.gene041121.t1;Parent=MS.gene041121.t1
chr5.2	exon	9953879	9954175	9953879	ID=MS.gene041121.t1.exon6;Parent=MS.gene041121.t1
chr5.2	CDS	9953879	9954175	9953879	ID=cds.MS.gene041121.t1;Parent=MS.gene041121.t1
chr5.2	exon	9953693	9953805	9953693	ID=MS.gene041121.t1.exon7;Parent=MS.gene041121.t1
chr5.2	CDS	9953693	9953805	9953693	ID=cds.MS.gene041121.t1;Parent=MS.gene041121.t1
chr5.2	exon	9953060	9953167	9953060	ID=MS.gene041121.t1.exon8;Parent=MS.gene041121.t1
chr5.2	CDS	9953060	9953167	9953060	ID=cds.MS.gene041121.t1;Parent=MS.gene041121.t1
chr5.2	exon	9952915	9952977	9952915	ID=MS.gene041121.t1.exon9;Parent=MS.gene041121.t1
chr5.2	CDS	9952915	9952977	9952915	ID=cds.MS.gene041121.t1;Parent=MS.gene041121.t1
chr5.2	exon	9952651	9952818	9952651	ID=MS.gene041121.t1.exon10;Parent=MS.gene041121.t1
chr5.2	CDS	9952651	9952818	9952651	ID=cds.MS.gene041121.t1;Parent=MS.gene041121.t1
chr5.2	exon	9952127	9952264	9952127	ID=MS.gene041121.t1.exon11;Parent=MS.gene041121.t1
chr5.2	CDS	9952127	9952264	9952127	ID=cds.MS.gene041121.t1;Parent=MS.gene041121.t1

Gene Sequence

>MS.gene041121

ATGGGTTTATGTACTTCAAAAAATCTCACGAGTCATTCCTCTCACAATTTCAACACTGAACTTCCTCAACAAAACTCCGTCACACTTAACGGTAGTTCTGAACCTCACACAAACTCCGTTACTGTCAATGGCGAAAACTCTAACGAAACAGAAGCCGTTAAGCGATCTCCGTTATTCCCGTTCTACACTCCAAGTCCAGCTCATCAATTCTTCTCTAAGATGTCTCCGGCGAGGATTTTCAAGCGGCCGTTTCCTCCACCGTCTCCGGCGAAGCATATACGATCGCTTCTAGCTCGCCGGCGTGGCTCCGTTGAAGTTTCGATACCGGAAGGTGGTGAAGAGGAGACTGTGGTTGCGCTTGATAAGAATTTTGGATTTTCCAAGCATTTTGGAAGTAGATATGAGGTTGGAGATGAAGTTGGAAGAGGACATTTTGGATATACTTGTGCTGCGAGGTTGAAGAAAGGTGATCGCAGAGGGCAACAAGTTGCTGTTAAAGTCATTCCCAAAGCTAAGGTTCTCATGCAAATCAATCACTATTTGAATGTTTATATGAGATTAAGCACGTTTGGATTTGACTTATTTGAGCTTATCCACTGATACATAAATTTGCGATCTATGAAACACTGACATGAACACCTAACATTGACACCGCTAATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATTCACATGTGACACTGTTATGTTTTGGACACCGGACACAACTTTTATCAGAAGTGTTATTTGCTACAAAGCTTGTGATACGACTCGAGAGAGTTTATGGAAATGGCTTATGGCATATATTCATAAGTCATTTTCAGCATTTTTCCTAAAAACAAATTATAGCTTGTTTATATAAAAACATTTTGGATTTATTTTTATTTTTGTTATAAAAATATATGAGCCTGTTTGGATTTGTTTGTTTGAGTTAATTTACTAGCATGAACACTTGTGAGACTATTTGGGAGAATCTATGAAAACAGCTTTTTGACGTGTTCATAATCTGTTTTGAGCTTATTTTCATAAGTTCTCTCAGGCAGCTTATCATAACAGCTTATAGCATATATGAAAGTAATTTATTGTTATAGAAATTGCTTGTACATAAGCGCTTATCATGATAAATGATTATGCTATAAGCTGTAAATTAAGTTGTTTATCCAAACAGGGTCATATCGTATACATAAGCACTCATATGATACGTACTTATGCTTAAACTGTTTATCCAAATATGTCCGTTGTGTTTTTAACTTTTATGTTTTAATTGTAGATGACATCTGCTATTGCTATTGAGGATGTGAGAAGGGAAGTGAAAATATTGAGAGCTTTGAATGGACATAAGAATCTAGTACGATTCTATGATGCTTATGAAGATCGTGATAATGTCTATATTGTAATGGAGTAAGCTTTAACTATGTTTCTCCTATGAGTTGACTGCCGTAGATCATCTTTTGTGAATATGTGATTTGATTTACAATACCTATATATTTTGTCCTATCTTTTTGGATGATTAAGTAAGGACAATTTAATTGCAATGGTTCTCTTATAAGTAAACAACCTTTCTTAAACTCTTGTTCATCTTCCAGATTGTGTGAAGGTGGAGAGCTGTTGGACAGAATATTATCAAGGTATTTATTTAGTTAGTTTTGAGATATACAGTCTTCAGAATGTTTAAAGTTTAAGTTGTTGAGTGATTGAAAGAGGCAAAATAGTGTGTTTGATTTTAAATTAGTTTTGTGCTCTTTCAGAGGTGGGAAGTACACGGAAGAAGATGCAAAAGCTATCCTGAGACAAATACTGAATGCTGCTGCATTTTGCCATCTACAGGGTGTTGTGCATCGGGATCTTAAACCTGAGGTCAAATATATTTGCAGTTTTTAATATTAATTTTTTATTTGTACATCATATTATTGAGCTTAGCTATTTAGCTTAAGTAATTAGACATTCAAATGTAGGGGTATAAGGTTAGTTTGGTGGCTGGGGGGACAAGTTAAGGAGCGGAGTTACAAGGAGGTCTAGGATTCGAACCACACTCCCAGCATAATACTAACAATTATTAACATTGTCCTTTTAAGATAATAGACACTCAAATGTACGTGTTGAAGTATCTTTTGCATTTAGAAAAGACCCTTTCTTTTTATGTGATTTTTTTTTATCCTAGGGGTGGGGGAGAGGGGGTAGTAGAATATGGCTATATGATGGTTATGATTTTTGCTTGATTTGGCCTGTGAGACTTGCCTCCTAATTCTTACCGGGCATTAACTTTAAGGTTCTAAATATGGCTAATTTTTGGATCAGAACTTCTTGTTCGCATCCAATGACGAGAACTCAGAACTGAAGGCTATAGACTTTGGGCTGTCGGATTTTGTTAAACTAGGTACGCTTGCCCTTTCACGTATATCACATGCCATTTATTATCATGGAGATGCTTTGTTTTCTGACTTCTCATTTTGCTTTATAGATGAAAGGCTCAATGATATTGTCGGTAGTGCATACTATGTGGCTCCTGAAGTTCTACTTAGAGCTTATAGTACTGAGGCTGATGTCTGGAGTATTGGAGTGATTGCGTATATTTTATTATGTGGCAGCCGTCCGTTTTGGGCTCGGACTGAGTCTGGCATCTTTCGTACTGTATTGAAATCTGATCCAAGTTTTGACGATCCTCCTTGGCCTTCTCTATCAGATGAGGCAAGCGATTTTGTTAAGAGATTACTAAATAAAGATCCAAGGAAAAGAATGAGTGCAGCACAAGCATTAAGTAAGTTTCTTGCGATTATTGTTGGCTCTCATTCTTCTATTTCTTTTTTGTTACTCACAATTGTGTACTGCAGGTCATCCGTGGATTAAAGACTATGATGATACGGAAGTACCTTTGGATATTTTAATTTTCAAGCTCATGAAGGCATACATGCGCTCTTCTTCTCTACGAAAAGCTGCTTTAAGGGTGTGTCTCTTTATATAAATCCTTGCCTGACTTTAAAAAACTAGATTTTGACTGTAAAAAAAAAAAAAAACCTGATTTTGATCCAGAATGAGCCTCTAATTGAAATGTATGTCCTGTTACTCTCCAACCTTGATTTTCACCACTGCAGTACTGCCACTCTTCTTCTATTAATATGATTAGATTTTCACTAAGTGTTTATGTTGAAGTTAATGTTCAAATTGTAGCTAAAGTTGATTGTTTTCCAAATATTGAGTAGCAGCCCTGCTGAACTTTTCAGAGTTTTTCTTTTTCCAACATGGCAGACTCAATTTCTTTTTCTATAGATGAAATGAGTTTTGGAAGTTTGAAGTTAAAGATGTGACAAAAAAAAATTACCTATACATTGTTTCCTTTCAAACCATTAGGCGTGAGCAAGTCTTTCTGCTATTTTGTTTTTTTTCTTCGTCTTTTTTCTTTTGGTTTATAACAATCTATGTACTTCTCAGTAACTTATCAAAAATGTTATTTCCATGGGCATTGGGACAGGCTTTGTCTAAGGCATTAACTGTGGATGAGCTAATCTATTTGAAGGAGCAGTTTGCACTTTTAGAACCTAACAAAAGTGGCACCATAAACTTGGAAAATATAAAAGCGGTTGGTATTTTGTTTCATTTCTTTTTTTATGCATGCTATTGGGAGGAAGGTGTTTATCATCTCACAAGTTTGAGTTGCTCAGGCCTTTTCAGTAAATGCAACAGATGCAATGAAGGAGTCACGCATTGCCGACTTTCTGGCATCAGTAAGTGCTGTGATTTAACTGTAGAATACCTCTATAAACTAAGAAAGAGAATTTTGTGGCCACAATAGTTATTGATACAAATAATCTGGGTGGCAGCTTAATGCATTGCAATATAGAAGGATGGATTTTGACGAGTTCTGTGCAGCTGCCCTTAGTGTTCATCAAATTGAAGCACTCGACCACTGGGAGAAGCGTGCACGTTATGCCTTTGACCTGTTTGAAAAGGATGGAAACAAGGCCATAGTCATTGACGAATTAGCTTCGGTATGCTTGATTTGACTATAATTATAAGTTATACATGTTTAAACTTCTCATGGTGCTGCATTTTGATCTCAATATATGAAGTTTCTTTATTCCTCATAATCTACTTTTCTAGCTACATTTACATAATGCCTAGTGGTTGCTAAATTAATAGAATGTAAAGGTCAATATTGTTGCAGATATAATGCAAGAAAAGAAACTAGCTTTTTTTTTTTTTCCTTTTTTCTAAATTAGTTTCAGTTGATATAATGTTTATAAGTTAATAAATGTTGTCTTTTCATTAGCAGTTTATGGAACTATCTGGTTTCGCTTGAATTTAGTAAACAATGGTCACTTTTAATAATTATGGAACTACATTTCTGATGAATGGTTTAAACTGAAATAATCAGGAGCTTGGGCTTGGTCCATCCATTCCTGTTCATGCTGTTCTTCATGATTGGATTCGGCACACTGATGGGAAGTTAAGCTTCCTTGGATTTGTGAAATTGTTGCATGGCCCATCAAGAAGTCTTGCAAAAGTTCAATAG

Protein sequence

>MS.gene041121.t1

MGLCTSKNLTSHSSHNFNTELPQQNSVTLNGSSEPHTNSVTVNGENSNETEAVKRSPLFPFYTPSPAHQFFSKMSPARIFKRPFPPPSPAKHIRSLLARRRGSVEVSIPEGGEEETVVALDKNFGFSKHFGSRYEVGDEVGRGHFGYTCAARLKKGDRRGQQVAVKVIPKAKMTSAIAIEDVRREVKILRALNGHKNLVRFYDAYEDRDNVYIVMELCEGGELLDRILSRGGKYTEEDAKAILRQILNAAAFCHLQGVVHRDLKPENFLFASNDENSELKAIDFGLSDFVKLDERLNDIVGSAYYVAPEVLLRAYSTEADVWSIGVIAYILLCGSRPFWARTESGIFRTVLKSDPSFDDPPWPSLSDEASDFVKRLLNKDPRKRMSAAQALSHPWIKDYDDTEVPLDILIFKLMKAYMRSSSLRKAALRALSKALTVDELIYLKEQFALLEPNKSGTINLENIKAAFSVNATDAMKESRIADFLASLNALQYRRMDFDEFCAAALSVHQIEALDHWEKRARYAFDLFEKDGNKAIVIDELASELGLGPSIPVHAVLHDWIRHTDGKLSFLGFVKLLHGPSRSLAKVQ