AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene041126

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene041126.t1 MTR_5g017950 99.369 317 1 1 1 316 1 317 0.0 636
MS.gene041126.t1 MTR_3g073690 77.236 123 28 0 1 123 2 124 1.01e-66 208
MS.gene041126.t1 MTR_3g452660 43.202 331 121 11 3 313 2 285 1.45e-61 198
MS.gene041126.t1 MTR_3g077240 68.182 110 35 0 2 111 4 113 2.01e-49 163
MS.gene041126.t1 MTR_7g033800 66.364 110 37 0 2 111 5 114 4.14e-49 162
MS.gene041126.t1 MTR_4g105170 69.811 106 32 0 6 111 9 114 4.26e-49 162
MS.gene041126.t1 MTR_6g005070 67.290 107 35 0 2 108 3 109 1.27e-48 159
MS.gene041126.t1 MTR_6g005080 62.727 110 41 0 2 111 4 113 1.26e-46 154
MS.gene041126.t1 MTR_8g040900 73.394 109 29 0 3 111 2 110 1.27e-46 157
MS.gene041126.t1 MTR_5g083230 59.200 125 50 1 6 130 4 127 1.25e-44 150
MS.gene041126.t1 MTR_3g031660 60.952 105 41 0 4 108 3 107 6.13e-43 146
MS.gene041126.t1 MTR_5g083960 60.748 107 42 0 5 111 36 142 5.52e-42 144
MS.gene041126.t1 MTR_3g071590 58.333 108 45 0 1 108 1 108 1.38e-41 142
MS.gene041126.t1 MTR_4g083680 63.366 101 37 0 7 107 14 114 2.89e-41 142
MS.gene041126.t1 MTR_2g068760 61.165 103 40 0 7 109 12 114 1.68e-40 139
MS.gene041126.t1 MTR_3g094690 60.000 105 42 0 7 111 46 150 3.96e-40 140
MS.gene041126.t1 MTR_5g083010 60.952 105 41 0 5 109 8 112 2.06e-39 137
MS.gene041126.t1 MTR_8g079660 46.309 149 63 3 8 153 8 142 4.57e-39 139
MS.gene041126.t1 MTR_2g093310 56.863 102 44 0 7 108 32 133 1.07e-38 135
MS.gene041126.t1 MTR_3g071420 60.784 102 40 0 5 106 11 112 1.85e-38 135
MS.gene041126.t1 MTR_8g079620 53.982 113 52 0 8 120 8 120 9.96e-38 134
MS.gene041126.t1 MTR_3g094690 59.048 105 42 1 7 111 46 149 1.10e-37 134
MS.gene041126.t1 MTR_7g096530 48.889 135 68 1 2 135 8 142 2.50e-36 130
MS.gene041126.t1 MTR_1g095850 56.436 101 44 0 9 109 73 173 3.01e-36 130
MS.gene041126.t1 MTR_4g060950 54.808 104 46 1 7 109 23 126 5.24e-36 128
MS.gene041126.t1 MTR_5g075020 60.000 105 42 0 7 111 42 146 9.19e-36 129
MS.gene041126.t1 MTR_5g075020 60.000 105 42 0 7 111 46 150 1.44e-35 129
MS.gene041126.t1 MTR_1g070220 56.190 105 45 1 4 107 11 115 5.26e-34 124
MS.gene041126.t1 MTR_8g079580 48.760 121 61 1 1 120 1 121 8.45e-34 124
MS.gene041126.t1 MTR_8g036085 55.238 105 46 1 8 111 23 127 4.31e-33 122
MS.gene041126.t1 MTR_8g036105 52.542 118 49 2 8 124 18 129 5.80e-33 121
MS.gene041126.t1 MTR_7g074990 56.863 102 43 1 8 108 20 121 5.90e-33 122
MS.gene041126.t1 MTR_6g027710 52.427 103 48 1 7 108 39 141 1.14e-31 118
MS.gene041126.t1 MTR_7g028905 48.544 103 53 0 7 109 4 106 1.64e-31 114
MS.gene041126.t1 MTR_7g096610 53.922 102 46 1 1 101 1 102 1.67e-30 115
MS.gene041126.t1 MTR_5g093010 46.602 103 55 0 9 111 6 108 3.03e-30 112
MS.gene041126.t1 MTR_5g080470 52.577 97 45 1 7 102 6 102 8.70e-30 112
MS.gene041126.t1 MTR_6g027700 41.259 143 82 2 8 148 7 149 3.92e-29 111
MS.gene041126.t1 MTR_1g070205 51.456 103 49 1 8 109 12 114 5.83e-29 111
MS.gene041126.t1 MTR_6g011200 46.667 105 55 1 6 109 7 111 2.38e-28 110
MS.gene041126.t1 MTR_7g075230 51.887 106 48 2 8 110 12 117 4.07e-27 105
MS.gene041126.t1 MTR_6g011230 42.574 101 58 0 5 105 8 108 1.45e-26 104
MS.gene041126.t1 MTR_6g011250 45.794 107 57 1 5 110 6 112 1.11e-25 101
MS.gene041126.t1 MTR_4g107450 46.000 100 54 0 9 108 11 110 9.10e-25 101
MS.gene041126.t1 MTR_4g099230 37.879 132 77 3 9 139 3 130 9.12e-25 98.2
MS.gene041126.t1 MTR_8g017090 38.835 103 63 0 9 111 13 115 8.75e-22 93.6
MS.gene041126.t1 MTR_5g085390 40.952 105 61 1 6 109 7 111 1.21e-20 89.4
MS.gene041126.t1 MTR_2g100020 35.294 102 66 0 9 110 20 121 9.82e-19 84.7
MS.gene041126.t1 MTR_4g088035 34.884 86 56 0 9 94 7 92 1.84e-14 72.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene041126.t1 AT5G66870 53.689 244 83 7 3 229 2 232 2.71e-69 218
MS.gene041126.t1 AT2G23660 43.226 310 129 12 5 303 2 275 2.69e-65 208
MS.gene041126.t1 AT2G23660 43.226 310 129 12 5 303 2 275 2.69e-65 208
MS.gene041126.t1 AT2G23660 43.226 310 129 12 5 303 2 275 2.69e-65 208
MS.gene041126.t1 AT1G65620 77.273 110 25 0 2 111 3 112 8.78e-50 164
MS.gene041126.t1 AT1G65620 77.273 110 25 0 2 111 3 112 8.78e-50 164
MS.gene041126.t1 AT1G65620 77.273 110 25 0 2 111 3 112 8.78e-50 164
MS.gene041126.t1 AT1G65620 77.273 110 25 0 2 111 3 112 8.78e-50 164
MS.gene041126.t1 AT1G65620 77.273 110 25 0 2 111 3 112 8.78e-50 164
MS.gene041126.t1 AT5G63090 62.400 125 47 0 2 126 5 129 1.31e-49 164
MS.gene041126.t1 AT5G63090 62.400 125 47 0 2 126 5 129 1.31e-49 164
MS.gene041126.t1 AT5G63090 62.400 125 47 0 2 126 5 129 1.31e-49 164
MS.gene041126.t1 AT5G63090 62.400 125 47 0 2 126 5 129 1.31e-49 164
MS.gene041126.t1 AT3G27650 64.602 113 40 0 1 113 32 144 2.39e-49 162
MS.gene041126.t1 AT2G30130 60.185 108 43 0 1 108 1 108 4.19e-43 147
MS.gene041126.t1 AT2G30340 52.381 126 55 1 7 132 52 172 7.04e-40 141
MS.gene041126.t1 AT2G30340 52.381 126 55 1 7 132 51 171 7.08e-40 141
MS.gene041126.t1 AT1G07900 50.388 129 62 1 7 133 32 160 1.09e-39 138
MS.gene041126.t1 AT1G31320 69.318 88 27 0 7 94 12 99 1.81e-39 137
MS.gene041126.t1 AT1G16530 60.194 103 40 1 7 108 13 115 5.05e-38 133
MS.gene041126.t1 AT2G28500 56.311 103 45 0 7 109 54 156 8.90e-38 134
MS.gene041126.t1 AT3G26660 52.941 102 48 0 9 110 6 107 2.40e-37 130
MS.gene041126.t1 AT3G26620 52.941 102 48 0 9 110 6 107 3.17e-37 129
MS.gene041126.t1 AT2G40470 60.000 105 42 0 7 111 19 123 2.17e-36 130
MS.gene041126.t1 AT2G40470 60.000 105 42 0 7 111 44 148 2.82e-36 130
MS.gene041126.t1 AT3G11090 55.963 109 48 0 5 113 8 116 5.43e-36 127
MS.gene041126.t1 AT4G00210 53.719 121 49 2 2 121 5 119 1.49e-35 128
MS.gene041126.t1 AT3G50510 45.455 143 73 3 6 146 10 149 1.80e-34 125
MS.gene041126.t1 AT3G50510 45.455 143 73 3 6 146 10 149 1.80e-34 125
MS.gene041126.t1 AT3G03760 56.311 103 44 1 7 108 50 152 4.68e-34 126
MS.gene041126.t1 AT2G42430 51.376 109 52 1 2 109 9 117 5.36e-32 120
MS.gene041126.t1 AT4G00220 55.446 101 44 1 11 110 20 120 1.85e-30 115
MS.gene041126.t1 AT2G45410 48.872 133 55 3 11 136 19 145 2.36e-30 114
MS.gene041126.t1 AT3G58190 52.427 103 48 1 8 109 11 113 5.46e-30 114
MS.gene041126.t1 AT5G35900 41.912 136 72 3 9 142 6 136 1.01e-29 112
MS.gene041126.t1 AT2G31310 50.000 102 50 1 7 107 6 107 8.18e-29 109
MS.gene041126.t1 AT2G45420 52.475 101 47 1 11 110 40 140 1.93e-28 110
MS.gene041126.t1 AT5G06080 52.000 100 47 1 3 101 2 101 1.87e-27 105
MS.gene041126.t1 AT2G42440 48.113 106 54 1 3 107 2 107 4.56e-27 106
MS.gene041126.t1 AT3G13850 40.777 103 61 0 9 111 37 139 2.43e-25 102
MS.gene041126.t1 AT3G47870 36.937 111 70 0 1 111 29 139 5.31e-24 100
MS.gene041126.t1 AT1G72980 42.056 107 62 0 2 108 7 113 7.25e-24 97.4
MS.gene041126.t1 AT4G22700 38.679 106 63 2 9 113 6 110 1.90e-19 85.1
MS.gene041126.t1 AT1G06280 38.947 95 58 0 9 103 25 119 5.98e-18 81.3
MS.gene041126.t1 AT2G19820 34.021 97 63 1 7 102 11 107 1.63e-13 66.6
MS.gene041126.t1 AT3G27940 27.826 115 83 0 7 121 4 118 6.31e-12 63.2
MS.gene041126.t1 AT3G27940 27.826 115 83 0 7 121 4 118 6.31e-12 63.2
MS.gene041126.t1 AT3G27940 27.826 115 83 0 7 121 4 118 6.31e-12 63.2

Find 75 sgRNAs with CRISPR-Local

Find 83 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGATCAATTGTCTCCTTCTT+TGG 0.211819 5.2:+10075607 MS.gene041126:CDS
ATTGTCTCCTTCTTTGGCTT+TGG 0.232947 5.2:+10075613 MS.gene041126:CDS
CGGCTGAGGGATCCGGTTTA+TGG 0.239083 5.2:+10075116 MS.gene041126:CDS
TTGTCTCCTTCTTTGGCTTT+GGG 0.248585 5.2:+10075614 MS.gene041126:CDS
GCGGGAACACCACCATTATA+AGG 0.269383 5.2:-10075314 None:intergenic
AATTCTCTTTACCCTTATAA+TGG 0.295168 5.2:+10075302 MS.gene041126:CDS
GCAACACCAACAGCAGAAAC+TGG 0.315263 5.2:-10075581 None:intergenic
AAGGAACTTGCTACTTATAT+TGG 0.327213 5.2:+10075209 MS.gene041126:CDS
CAGCAGCATAATAACCCTTT+TGG 0.373437 5.2:+10075278 MS.gene041126:CDS
TCATCATCATCTTCCACTTC+AGG 0.390138 5.2:+10075721 MS.gene041126:CDS
TGTACATATGCAAATCTTTG+AGG 0.398921 5.2:-10074993 None:intergenic
TCTAATTCTTCTGCTGGTGG+TGG 0.400810 5.2:+10075542 MS.gene041126:CDS
TCAGTTTCTAATTCTTCTGC+TGG 0.413224 5.2:+10075536 MS.gene041126:CDS
GTCTGTTGTTGATGAGTTTG+TGG 0.423662 5.2:-10075782 None:intergenic
ATGAGGCCGAGGCGCGGCTG+AGG 0.424591 5.2:+10075102 MS.gene041126:CDS
GCCGCAGCAGGCGTCTGCTG+CGG 0.439247 5.2:-10075371 None:intergenic
GGTTAAGTCGTTGGCTTATG+AGG 0.447260 5.2:+10075085 MS.gene041126:CDS
CGAGGCGCGGCTGAGGGATC+CGG 0.449579 5.2:+10075109 MS.gene041126:CDS
ATTGGTCCTCAGGCGCTTCA+AGG 0.451437 5.2:+10075227 MS.gene041126:CDS
CCGCAGCAGGCGTCTGCTGC+GGG 0.454243 5.2:-10075370 None:intergenic
TGCTACTTATATTGGTCCTC+AGG 0.459742 5.2:+10075217 MS.gene041126:CDS
CTAATTCTTCTGCTGGTGGT+GGG 0.463044 5.2:+10075543 MS.gene041126:CDS
TTGTGCACCCGCGGTTACCG+CGG 0.464714 5.2:-10075333 None:intergenic
CGGGAACACCACCATTATAA+GGG 0.465460 5.2:-10075313 None:intergenic
ATCTGATGTTGAGCCGCAGC+AGG 0.471893 5.2:-10075383 None:intergenic
GATCTTGGAAGCTCAACAAT+TGG 0.474204 5.2:+10075403 MS.gene041126:CDS
CAGCAGAAACTGGGGACACT+TGG 0.475268 5.2:-10075571 None:intergenic
GGTAACCGCGGGTGCACAAA+TGG 0.477206 5.2:+10075337 MS.gene041126:CDS
GGCTGTGCTTGCTTCTGTTG+TGG 0.478322 5.2:-10075761 None:intergenic
GCAAATCTTTGAGGATTGTC+CGG 0.480888 5.2:-10074984 None:intergenic
GGTGTTCCCGCGGTAACCGC+GGG 0.482391 5.2:+10075326 MS.gene041126:CDS
GGGTAAAGAGAATTACCAAA+AGG 0.483287 5.2:-10075293 None:intergenic
TGAACTTAATAATGCTAAGA+AGG 0.486169 5.2:+10075190 MS.gene041126:CDS
CAACACCAACAGCAGAAACT+GGG 0.487780 5.2:-10075580 None:intergenic
TGCGGCTCAACATCAGATCT+TGG 0.495170 5.2:+10075388 MS.gene041126:CDS
GATCCGGTTTATGGTTGTGT+TGG 0.495699 5.2:+10075125 MS.gene041126:CDS
AGACCAACACAACCATAAAC+CGG 0.496772 5.2:-10075128 None:intergenic
GTGTCCCCAGTTTCTGCTGT+TGG 0.507305 5.2:+10075575 MS.gene041126:CDS
GTGCGGCGTGTAAGTTTCTC+CGG 0.509242 5.2:+10074919 MS.gene041126:CDS
GGTAAAGAGAATTACCAAAA+GGG 0.512111 5.2:-10075292 None:intergenic
AGCGAGGAGTGTAGGAGTGT+TGG 0.514933 5.2:+10075809 MS.gene041126:CDS
TGTGCACCCGCGGTTACCGC+GGG 0.515303 5.2:-10075332 None:intergenic
CATAAGCTAAGAGCTATTCA+AGG 0.519225 5.2:+10075167 MS.gene041126:CDS
TGATGACGCGGTTAAGTCGT+TGG 0.519238 5.2:+10075076 MS.gene041126:CDS
GGATTGTCCGGTGGAAAATA+CGG 0.519970 5.2:-10074972 None:intergenic
CGGATCCCTCAGCCGCGCCT+CGG 0.522353 5.2:-10075108 None:intergenic
TGAGGCCGAGGCGCGGCTGA+GGG 0.524798 5.2:+10075103 MS.gene041126:CDS
GTTTCTAATTCTTCTGCTGG+TGG 0.536833 5.2:+10075539 MS.gene041126:CDS
GAGTGTAGGAGTGTTGGACT+TGG 0.536956 5.2:+10075815 MS.gene041126:CDS
AGACGGAAAGCGAGGAGTGT+AGG 0.539133 5.2:+10075801 MS.gene041126:CDS
GTTTAGTGGTGGGTTTGATG+TGG 0.541632 5.2:+10075511 MS.gene041126:CDS
AAAGATCCCAAAGCCAAAGA+AGG 0.541675 5.2:-10075620 None:intergenic
TGTTGCTGAAGAATCGTTGT+GGG 0.541846 5.2:-10075254 None:intergenic
CCCGCAGCAGACGCCTGCTG+CGG 0.542542 5.2:+10075370 MS.gene041126:CDS
TCTCTTTACCCTTATAATGG+TGG 0.546514 5.2:+10075305 MS.gene041126:CDS
GTCGTTGGCTTATGAGGCCG+AGG 0.551333 5.2:+10075091 MS.gene041126:CDS
TGGTGTTCCCGCGGTAACCG+CGG 0.556227 5.2:+10075325 MS.gene041126:CDS
CAACAAGCACAACAAGGACA+AGG 0.557226 5.2:+10075665 MS.gene041126:CDS
CGCGACGCAGCGTGATGACG+CGG 0.567241 5.2:+10075064 MS.gene041126:CDS
ATCATCAAATTCACCGTGTG+CGG 0.568953 5.2:+10074902 MS.gene041126:CDS
AACACCAACAGCAGAAACTG+GGG 0.572504 5.2:-10075579 None:intergenic
TGTGCTTGCTTCTGTTGTGG+TGG 0.587755 5.2:-10075758 None:intergenic
AGTAATAGCTGAGCCTGAAG+TGG 0.590089 5.2:-10075734 None:intergenic
TGGCTTATGAGGCCGAGGCG+CGG 0.601042 5.2:+10075096 MS.gene041126:CDS
CTGTTGCTGAAGAATCGTTG+TGG 0.605192 5.2:-10075255 None:intergenic
AAATTTGAAAATCAACAAGA+AGG 0.611014 5.2:-10075839 None:intergenic
ACAAACTCATCAACAACAGA+CGG 0.618822 5.2:+10075784 MS.gene041126:CDS
AATCACCATTTGTGCACCCG+CGG 0.620661 5.2:-10075342 None:intergenic
GGAATACCTTGAAGCGCCTG+AGG 0.633316 5.2:-10075233 None:intergenic
CACATGCAACAAGCACAACA+AGG 0.635119 5.2:+10075659 MS.gene041126:CDS
AGAAACTTACACGCCGCACA+CGG 0.639705 5.2:-10074915 None:intergenic
CAAGCACAACAAGGACAAGG+AGG 0.641075 5.2:+10075668 MS.gene041126:CDS
TTATAATGGTGGTGTTCCCG+CGG 0.653196 5.2:+10075316 MS.gene041126:CDS
AATCTTTGAGGATTGTCCGG+TGG 0.653598 5.2:-10074981 None:intergenic
TCAACAACAGACGGAAAGCG+AGG 0.658343 5.2:+10075793 MS.gene041126:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
! AATTCTCTTTACCCTTATAA+TGG + chr5.2:10075302-10075321 MS.gene041126:CDS 25.0%
! TGAACTTAATAATGCTAAGA+AGG + chr5.2:10075190-10075209 MS.gene041126:CDS 25.0%
GGTAAAGAGAATTACCAAAA+GGG - chr5.2:10075295-10075314 None:intergenic 30.0%
TGTACATATGCAAATCTTTG+AGG - chr5.2:10074996-10075015 None:intergenic 30.0%
! GCATATGTACACAAAGTTTT+TGG + chr5.2:10075005-10075024 MS.gene041126:CDS 30.0%
!! AAGGAACTTGCTACTTATAT+TGG + chr5.2:10075209-10075228 MS.gene041126:CDS 30.0%
ACAAACTCATCAACAACAGA+CGG + chr5.2:10075784-10075803 MS.gene041126:CDS 35.0%
CATAAGCTAAGAGCTATTCA+AGG + chr5.2:10075167-10075186 MS.gene041126:CDS 35.0%
GGGTAAAGAGAATTACCAAA+AGG - chr5.2:10075296-10075315 None:intergenic 35.0%
TCAGTTTCTAATTCTTCTGC+TGG + chr5.2:10075536-10075555 MS.gene041126:CDS 35.0%
TCTCTTTACCCTTATAATGG+TGG + chr5.2:10075305-10075324 MS.gene041126:CDS 35.0%
TGATCAATTGTCTCCTTCTT+TGG + chr5.2:10075607-10075626 MS.gene041126:CDS 35.0%
!!! AGTTTTTGAGGTTTAGTGGT+GGG + chr5.2:10075501-10075520 MS.gene041126:CDS 35.0%
!!! CAAGAGTTTTTGAGGTTTAG+TGG + chr5.2:10075497-10075516 MS.gene041126:CDS 35.0%
AAAGATCCCAAAGCCAAAGA+AGG - chr5.2:10075623-10075642 None:intergenic 40.0%
AGACCAACACAACCATAAAC+CGG - chr5.2:10075131-10075150 None:intergenic 40.0%
ATCATCAAATTCACCGTGTG+CGG + chr5.2:10074902-10074921 MS.gene041126:CDS 40.0%
GATCTTGGAAGCTCAACAAT+TGG + chr5.2:10075403-10075422 MS.gene041126:CDS 40.0%
GTTTCTAATTCTTCTGCTGG+TGG + chr5.2:10075539-10075558 MS.gene041126:CDS 40.0%
TCATCATCATCTTCCACTTC+AGG + chr5.2:10075721-10075740 MS.gene041126:CDS 40.0%
TGTTGCTGAAGAATCGTTGT+GGG - chr5.2:10075257-10075276 None:intergenic 40.0%
! AGCAACAGCAAGAGTTTTTG+AGG + chr5.2:10075489-10075508 MS.gene041126:CDS 40.0%
! ATTGTCTCCTTCTTTGGCTT+TGG + chr5.2:10075613-10075632 MS.gene041126:CDS 40.0%
! CAGCAGCATAATAACCCTTT+TGG + chr5.2:10075278-10075297 MS.gene041126:CDS 40.0%
! GAGAGCAGCAAGAGATTTTT+AGG + chr5.2:10075444-10075463 MS.gene041126:CDS 40.0%
! GCAAATCTTTGAGGATTGTC+CGG - chr5.2:10074987-10075006 None:intergenic 40.0%
! GTCTGTTGTTGATGAGTTTG+TGG - chr5.2:10075785-10075804 None:intergenic 40.0%
! TGCTACTTATATTGGTCCTC+AGG + chr5.2:10075217-10075236 MS.gene041126:CDS 40.0%
! TTTTGCACCGTATTTTCCAC+CGG + chr5.2:10074965-10074984 MS.gene041126:CDS 40.0%
!! TTGTCTCCTTCTTTGGCTTT+GGG + chr5.2:10075614-10075633 MS.gene041126:CDS 40.0%
!!! AGTTTTTGGAGCTAGTAACG+TGG + chr5.2:10075019-10075038 MS.gene041126:CDS 40.0%
!!! GAGTTTTTGAGGTTTAGTGG+TGG + chr5.2:10075500-10075519 MS.gene041126:CDS 40.0%
AACACCAACAGCAGAAACTG+GGG - chr5.2:10075582-10075601 None:intergenic 45.0%
AGTAATAGCTGAGCCTGAAG+TGG - chr5.2:10075737-10075756 None:intergenic 45.0%
CAACAAGCACAACAAGGACA+AGG + chr5.2:10075665-10075684 MS.gene041126:CDS 45.0%
CAACACCAACAGCAGAAACT+GGG - chr5.2:10075583-10075602 None:intergenic 45.0%
CACATGCAACAAGCACAACA+AGG + chr5.2:10075659-10075678 MS.gene041126:CDS 45.0%
CGGGAACACCACCATTATAA+GGG - chr5.2:10075316-10075335 None:intergenic 45.0%
CTAATTCTTCTGCTGGTGGT+GGG + chr5.2:10075543-10075562 MS.gene041126:CDS 45.0%
CTGTTGCTGAAGAATCGTTG+TGG - chr5.2:10075258-10075277 None:intergenic 45.0%
GATCCGGTTTATGGTTGTGT+TGG + chr5.2:10075125-10075144 MS.gene041126:CDS 45.0%
GGATTGTCCGGTGGAAAATA+CGG - chr5.2:10074975-10074994 None:intergenic 45.0%
TCTAATTCTTCTGCTGGTGG+TGG + chr5.2:10075542-10075561 MS.gene041126:CDS 45.0%
! AATCTTTGAGGATTGTCCGG+TGG - chr5.2:10074984-10075003 None:intergenic 45.0%
! ACTCTTGAGTGCATTTTCGC+CGG - chr5.2:10074941-10074960 None:intergenic 45.0%
! TTATAATGGTGGTGTTCCCG+CGG + chr5.2:10075316-10075335 MS.gene041126:CDS 45.0%
!! GGTTAAGTCGTTGGCTTATG+AGG + chr5.2:10075085-10075104 MS.gene041126:CDS 45.0%
!! GTTTAGTGGTGGGTTTGATG+TGG + chr5.2:10075511-10075530 MS.gene041126:CDS 45.0%
AATCACCATTTGTGCACCCG+CGG - chr5.2:10075345-10075364 None:intergenic 50.0%
AGAAACTTACACGCCGCACA+CGG - chr5.2:10074918-10074937 None:intergenic 50.0%
CAAGCACAACAAGGACAAGG+AGG + chr5.2:10075668-10075687 MS.gene041126:CDS 50.0%
GCAACACCAACAGCAGAAAC+TGG - chr5.2:10075584-10075603 None:intergenic 50.0%
GCGGGAACACCACCATTATA+AGG - chr5.2:10075317-10075336 None:intergenic 50.0%
TCAACAACAGACGGAAAGCG+AGG + chr5.2:10075793-10075812 MS.gene041126:CDS 50.0%
TGCGGCTCAACATCAGATCT+TGG + chr5.2:10075388-10075407 MS.gene041126:CDS 50.0%
TGTGCTTGCTTCTGTTGTGG+TGG - chr5.2:10075761-10075780 None:intergenic 50.0%
! TGATGACGCGGTTAAGTCGT+TGG + chr5.2:10075076-10075095 MS.gene041126:CDS 50.0%
!! GAGTGTAGGAGTGTTGGACT+TGG + chr5.2:10075815-10075834 MS.gene041126:CDS 50.0%
ATCTGATGTTGAGCCGCAGC+AGG - chr5.2:10075386-10075405 None:intergenic 55.0%
ATTGGTCCTCAGGCGCTTCA+AGG + chr5.2:10075227-10075246 MS.gene041126:CDS 55.0%
CAGCAGAAACTGGGGACACT+TGG - chr5.2:10075574-10075593 None:intergenic 55.0%
GGCTGTGCTTGCTTCTGTTG+TGG - chr5.2:10075764-10075783 None:intergenic 55.0%
GTGCGGCGTGTAAGTTTCTC+CGG + chr5.2:10074919-10074938 MS.gene041126:CDS 55.0%
GTGTCCCCAGTTTCTGCTGT+TGG + chr5.2:10075575-10075594 MS.gene041126:CDS 55.0%
! AGACGGAAAGCGAGGAGTGT+AGG + chr5.2:10075801-10075820 MS.gene041126:CDS 55.0%
! AGCGAGGAGTGTAGGAGTGT+TGG + chr5.2:10075809-10075828 MS.gene041126:CDS 55.0%
! GGAATACCTTGAAGCGCCTG+AGG - chr5.2:10075236-10075255 None:intergenic 55.0%
CGGCTGAGGGATCCGGTTTA+TGG + chr5.2:10075116-10075135 MS.gene041126:CDS 60.0%
GGTAACCGCGGGTGCACAAA+TGG + chr5.2:10075337-10075356 MS.gene041126:CDS 60.0%
!! GTCGTTGGCTTATGAGGCCG+AGG + chr5.2:10075091-10075110 MS.gene041126:CDS 60.0%
TGGCTTATGAGGCCGAGGCG+CGG + chr5.2:10075096-10075115 MS.gene041126:CDS 65.0%
TGGTGTTCCCGCGGTAACCG+CGG + chr5.2:10075325-10075344 MS.gene041126:CDS 65.0%
TTGTGCACCCGCGGTTACCG+CGG - chr5.2:10075336-10075355 None:intergenic 65.0%
GGTGTTCCCGCGGTAACCGC+GGG + chr5.2:10075326-10075345 MS.gene041126:CDS 70.0%
TGTGCACCCGCGGTTACCGC+GGG - chr5.2:10075335-10075354 None:intergenic 70.0%
! CGCGACGCAGCGTGATGACG+CGG + chr5.2:10075064-10075083 MS.gene041126:CDS 70.0%
ATGAGGCCGAGGCGCGGCTG+AGG + chr5.2:10075102-10075121 MS.gene041126:CDS 75.0%
CCCGCAGCAGACGCCTGCTG+CGG + chr5.2:10075370-10075389 MS.gene041126:CDS 75.0%
CCGCAGCAGGCGTCTGCTGC+GGG - chr5.2:10075373-10075392 None:intergenic 75.0%
CGAGGCGCGGCTGAGGGATC+CGG + chr5.2:10075109-10075128 MS.gene041126:CDS 75.0%
CGGATCCCTCAGCCGCGCCT+CGG - chr5.2:10075111-10075130 None:intergenic 75.0%
GCCGCAGCAGGCGTCTGCTG+CGG - chr5.2:10075374-10075393 None:intergenic 75.0%
TGAGGCCGAGGCGCGGCTGA+GGG + chr5.2:10075103-10075122 MS.gene041126:CDS 75.0%


Chromosome Type Strat End Strand Name
chr5.2 gene 10074894 10075850 10074894 ID=MS.gene041126
chr5.2 mRNA 10074894 10075850 10074894 ID=MS.gene041126.t1;Parent=MS.gene041126
chr5.2 exon 10074894 10075850 10074894 ID=MS.gene041126.t1.exon1;Parent=MS.gene041126.t1
chr5.2 CDS 10074894 10075850 10074894 ID=cds.MS.gene041126.t1;Parent=MS.gene041126.t1
Gene Sequence

>MS.gene041126

ATGTCGTCATCATCAAATTCACCGTGTGCGGCGTGTAAGTTTCTCCGGCGAAAATGCACTCAAGAGTGTGTTTTTGCACCGTATTTTCCACCGGACAATCCTCAAAGATTTGCATATGTACACAAAGTTTTTGGAGCTAGTAACGTGGCTAAGCTGTTAAACGAGCTTAACGCGACGCAGCGTGATGACGCGGTTAAGTCGTTGGCTTATGAGGCCGAGGCGCGGCTGAGGGATCCGGTTTATGGTTGTGTTGGTCTTATTTCACTTCTTCAGCATAAGCTAAGAGCTATTCAAGGTGAACTTAATAATGCTAAGAAGGAACTTGCTACTTATATTGGTCCTCAGGCGCTTCAAGGTATTCCCACAACGATTCTTCAGCAACAGCAGCAGCATAATAACCCTTTTGGTAATTCTCTTTACCCTTATAATGGTGGTGTTCCCGCGGTAACCGCGGGTGCACAAATGGTGATTCGTGACCCGCAGCAGACGCCTGCTGCGGCTCAACATCAGATCTTGGAAGCTCAACAATTGGCTGCTGCTGTTGCTGCTAGAGAGCAGCAAGAGATTTTTAGGACTTTTGAGAATCAACAACAGCAGCAACAGCAAGAGTTTTTGAGGTTTAGTGGTGGGTTTGATGTGGATTCAGTTTCTAATTCTTCTGCTGGTGGTGGGTTCAACCAAGTGTCCCCAGTTTCTGCTGTTGGTGTTGCTGCTGATCAATTGTCTCCTTCTTTGGCTTTGGGATCTTTTGATAACACTTATCATCACATGCAACAAGCACAACAAGGACAAGGAGGAGAATCTCATAATCTTCATCATCATCATAATCATCATCATCTTCCACTTCAGGCTCAGCTATTACTTCCACCACAACAGAAGCAAGCACAGCCACAAACTCATCAACAACAGACGGAAAGCGAGGAGTGTAGGAGTGTTGGACTTGGTCCTTCTTGTTGA
Protein sequence

>MS.gene041126.t1

MSSSSNSPCAACKFLRRKCTQECVFAPYFPPDNPQRFAYVHKVFGASNVAKLLNELNATQRDDAVKSLAYEAEARLRDPVYGCVGLISLLQHKLRAIQGELNNAKKELATYIGPQALQGIPTTILQQQQQHNNPFGNSLYPYNGGVPAVTAGAQMVIRDPQQTPAAAQHQILEAQQLAAAVAAREQQEIFRTFENQQQQQQQEFLRFSGGFDVDSVSNSSAGGGFNQVSPVSAVGVAADQLSPSLALGSFDNTYHHMQQAQQGQGGESHNLHHHHNHHHLPLQAQLLLPPQQKQAQPQTHQQQTESEECRSVGLGPSC