Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene04119.t1 | XP_003600455.1 | 82.8 | 285 | 45 | 2 | 1 | 285 | 1 | 281 | 5.70E-130 | 473.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene04119.t1 | Q8L3W1 | 25.4 | 334 | 185 | 9 | 12 | 285 | 6 | 335 | 1.6e-19 | 98.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene04119.t1 | G8A2Z2 | 82.8 | 285 | 45 | 2 | 1 | 285 | 1 | 281 | 4.1e-130 | 473.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene04119.t1 | TF | B3 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene04119.t1 | MTR_3g061370 | 82.807 | 285 | 45 | 2 | 1 | 285 | 1 | 281 | 3.02e-173 | 480 |
| MS.gene04119.t1 | MTR_3g061350 | 80.351 | 285 | 55 | 1 | 1 | 285 | 1 | 284 | 2.69e-168 | 467 |
| MS.gene04119.t1 | MTR_3g061320 | 74.386 | 285 | 67 | 4 | 1 | 285 | 1 | 279 | 3.39e-147 | 414 |
| MS.gene04119.t1 | MTR_3g061340 | 70.979 | 286 | 70 | 3 | 1 | 285 | 1 | 274 | 1.78e-141 | 399 |
| MS.gene04119.t1 | MTR_3g061330 | 79.051 | 253 | 50 | 3 | 1 | 252 | 1 | 251 | 1.81e-138 | 390 |
| MS.gene04119.t1 | MTR_3g061310 | 68.293 | 287 | 87 | 3 | 1 | 285 | 1 | 285 | 6.76e-136 | 385 |
| MS.gene04119.t1 | MTR_3g061290 | 71.676 | 173 | 47 | 2 | 1 | 173 | 1 | 171 | 1.18e-82 | 247 |
| MS.gene04119.t1 | MTR_3g061300 | 69.421 | 121 | 37 | 0 | 164 | 284 | 2 | 122 | 6.84e-54 | 171 |
| MS.gene04119.t1 | MTR_3g061220 | 67.669 | 133 | 27 | 4 | 1 | 133 | 1 | 117 | 2.04e-52 | 167 |
| MS.gene04119.t1 | MTR_8g103940 | 34.395 | 314 | 148 | 9 | 10 | 285 | 37 | 330 | 2.20e-47 | 165 |
| MS.gene04119.t1 | MTR_8g103940 | 47.692 | 65 | 33 | 1 | 221 | 285 | 431 | 494 | 2.98e-11 | 63.9 |
| MS.gene04119.t1 | MTR_1g035460 | 35.034 | 294 | 148 | 9 | 26 | 285 | 2 | 286 | 2.47e-45 | 157 |
| MS.gene04119.t1 | MTR_7g050560 | 35.052 | 291 | 164 | 8 | 9 | 285 | 10 | 289 | 3.79e-45 | 155 |
| MS.gene04119.t1 | MTR_7g050710 | 33.226 | 310 | 169 | 11 | 5 | 285 | 6 | 306 | 1.61e-44 | 154 |
| MS.gene04119.t1 | MTR_1g108780 | 34.228 | 298 | 139 | 8 | 25 | 285 | 12 | 289 | 2.01e-44 | 156 |
| MS.gene04119.t1 | MTR_1g108780 | 27.468 | 233 | 129 | 10 | 65 | 285 | 253 | 457 | 2.97e-11 | 63.9 |
| MS.gene04119.t1 | MTR_3g098790 | 32.226 | 301 | 168 | 10 | 9 | 285 | 10 | 298 | 4.03e-40 | 142 |
| MS.gene04119.t1 | MTR_5g044670 | 30.952 | 294 | 174 | 9 | 12 | 284 | 16 | 301 | 4.73e-39 | 139 |
| MS.gene04119.t1 | MTR_7g050580 | 31.724 | 290 | 179 | 9 | 7 | 285 | 8 | 289 | 8.88e-35 | 128 |
| MS.gene04119.t1 | MTR_7g050720 | 30.000 | 310 | 182 | 9 | 9 | 285 | 7 | 314 | 3.18e-33 | 124 |
| MS.gene04119.t1 | MTR_7g050590 | 29.795 | 292 | 159 | 9 | 26 | 285 | 2 | 279 | 3.33e-31 | 118 |
| MS.gene04119.t1 | MTR_1g035640 | 29.893 | 281 | 178 | 7 | 12 | 284 | 9 | 278 | 6.09e-30 | 117 |
| MS.gene04119.t1 | MTR_4g119990 | 28.525 | 305 | 183 | 11 | 10 | 285 | 13 | 311 | 6.89e-29 | 113 |
| MS.gene04119.t1 | MTR_3g005480 | 29.930 | 284 | 144 | 7 | 12 | 285 | 21 | 259 | 1.41e-28 | 110 |
| MS.gene04119.t1 | MTR_5g070440 | 30.000 | 280 | 157 | 8 | 12 | 285 | 21 | 267 | 1.56e-27 | 107 |
| MS.gene04119.t1 | MTR_3g005490 | 28.674 | 279 | 153 | 7 | 12 | 285 | 21 | 258 | 3.17e-27 | 107 |
| MS.gene04119.t1 | MTR_6g043890 | 27.517 | 298 | 162 | 10 | 10 | 272 | 13 | 291 | 2.41e-24 | 100 |
| MS.gene04119.t1 | MTR_1g035570 | 27.027 | 296 | 174 | 11 | 12 | 284 | 9 | 285 | 9.80e-23 | 97.1 |
| MS.gene04119.t1 | MTR_6g061070 | 27.245 | 323 | 185 | 8 | 2 | 284 | 8 | 320 | 4.47e-22 | 95.9 |
| MS.gene04119.t1 | MTR_3g005420 | 27.208 | 283 | 161 | 7 | 12 | 285 | 289 | 535 | 1.28e-20 | 91.7 |
| MS.gene04119.t1 | MTR_3g005420 | 36.937 | 111 | 67 | 2 | 12 | 119 | 40 | 150 | 1.09e-16 | 80.1 |
| MS.gene04119.t1 | MTR_4g068320 | 32.576 | 132 | 81 | 2 | 12 | 135 | 6 | 137 | 1.96e-20 | 90.9 |
| MS.gene04119.t1 | MTR_1g034240 | 33.582 | 134 | 85 | 2 | 8 | 137 | 1 | 134 | 2.01e-20 | 90.9 |
| MS.gene04119.t1 | MTR_3g005460 | 27.407 | 270 | 142 | 8 | 12 | 279 | 25 | 242 | 4.91e-20 | 90.1 |
| MS.gene04119.t1 | MTR_3g005460 | 27.526 | 287 | 167 | 8 | 10 | 285 | 260 | 516 | 7.59e-20 | 89.4 |
| MS.gene04119.t1 | MTR_1g021360 | 26.298 | 289 | 193 | 9 | 10 | 282 | 182 | 466 | 6.62e-20 | 89.4 |
| MS.gene04119.t1 | MTR_3g005495 | 28.058 | 278 | 137 | 7 | 12 | 279 | 243 | 467 | 7.05e-20 | 89.4 |
| MS.gene04119.t1 | MTR_3g005495 | 38.542 | 96 | 59 | 0 | 25 | 120 | 28 | 123 | 2.36e-17 | 82.0 |
| MS.gene04119.t1 | MTR_1g035620 | 26.174 | 298 | 172 | 12 | 9 | 284 | 6 | 277 | 7.53e-20 | 89.0 |
| MS.gene04119.t1 | MTR_7g050640 | 41.667 | 96 | 54 | 1 | 10 | 103 | 11 | 106 | 3.90e-19 | 81.3 |
| MS.gene04119.t1 | MTR_1g035650 | 40.196 | 102 | 57 | 2 | 9 | 108 | 6 | 105 | 4.12e-19 | 83.6 |
| MS.gene04119.t1 | MTR_1g035440 | 42.308 | 104 | 57 | 2 | 8 | 108 | 11 | 114 | 7.33e-19 | 84.0 |
| MS.gene04119.t1 | MTR_1g021435 | 23.839 | 323 | 182 | 11 | 22 | 284 | 34 | 352 | 1.85e-17 | 81.6 |
| MS.gene04119.t1 | MTR_1g034210 | 38.182 | 110 | 63 | 3 | 7 | 114 | 3 | 109 | 2.99e-17 | 80.9 |
| MS.gene04119.t1 | MTR_3g005440 | 35.185 | 108 | 70 | 0 | 13 | 120 | 23 | 130 | 3.73e-17 | 81.3 |
| MS.gene04119.t1 | MTR_3g005440 | 37.374 | 99 | 62 | 0 | 22 | 120 | 254 | 352 | 2.77e-15 | 75.9 |
| MS.gene04119.t1 | MTR_1g034210 | 38.182 | 110 | 63 | 3 | 7 | 114 | 3 | 109 | 4.35e-17 | 80.9 |
| MS.gene04119.t1 | MTR_1g035520 | 27.414 | 321 | 171 | 14 | 12 | 284 | 76 | 382 | 4.99e-17 | 80.5 |
| MS.gene04119.t1 | MTR_3g005420 | 36.937 | 111 | 67 | 2 | 12 | 119 | 21 | 131 | 1.08e-16 | 80.1 |
| MS.gene04119.t1 | MTR_1g050845 | 25.170 | 294 | 168 | 12 | 9 | 284 | 6 | 265 | 6.83e-16 | 78.2 |
| MS.gene04119.t1 | MTR_1g033740 | 30.464 | 151 | 97 | 4 | 2 | 147 | 12 | 159 | 3.17e-15 | 72.8 |
| MS.gene04119.t1 | MTR_1g035480 | 32.394 | 142 | 85 | 5 | 2 | 136 | 7 | 144 | 1.69e-14 | 70.5 |
| MS.gene04119.t1 | MTR_1g035510 | 33.333 | 114 | 69 | 4 | 26 | 136 | 2 | 111 | 1.13e-12 | 66.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene04119.t1 | AT3G18990 | 26.023 | 342 | 182 | 11 | 8 | 285 | 1 | 335 | 4.71e-28 | 110 |
| MS.gene04119.t1 | AT3G18990 | 26.316 | 342 | 181 | 11 | 8 | 285 | 1 | 335 | 9.41e-28 | 110 |
| MS.gene04119.t1 | AT1G49475 | 40.833 | 120 | 66 | 3 | 11 | 128 | 33 | 149 | 2.26e-20 | 86.7 |
| MS.gene04119.t1 | AT4G01580 | 35.088 | 114 | 72 | 1 | 11 | 122 | 29 | 142 | 2.02e-17 | 79.0 |
| MS.gene04119.t1 | AT3G18960 | 38.000 | 100 | 60 | 1 | 11 | 108 | 29 | 128 | 1.05e-16 | 77.0 |
| MS.gene04119.t1 | AT3G18960 | 38.000 | 100 | 60 | 1 | 11 | 108 | 29 | 128 | 1.20e-16 | 77.0 |
| MS.gene04119.t1 | AT3G18960 | 40.476 | 84 | 50 | 0 | 25 | 108 | 8 | 91 | 5.10e-14 | 68.9 |
| MS.gene04119.t1 | AT4G33280 | 21.782 | 303 | 203 | 9 | 10 | 285 | 23 | 318 | 2.10e-13 | 69.7 |
| MS.gene04119.t1 | AT2G16210 | 27.402 | 281 | 183 | 9 | 12 | 282 | 19 | 288 | 1.50e-11 | 63.9 |
| MS.gene04119.t1 | AT3G53310 | 35.294 | 102 | 64 | 2 | 1 | 101 | 1 | 101 | 2.24e-11 | 63.5 |
Find 52 sgRNAs with CRISPR-Local
Find 76 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCAATAACCCCTTTAAAATT+TGG | 0.181999 | 3.2:+52468869 | None:intergenic |
| GCACTAAATGGAAAGTTTAT+TGG | 0.220986 | 3.2:-52469542 | MS.gene04119:CDS |
| CGTTCTTATGAGAGCAAAAT+TGG | 0.231886 | 3.2:-52468785 | MS.gene04119:CDS |
| GTATGTTCTACCAGATTAAT+TGG | 0.237843 | 3.2:+52468993 | None:intergenic |
| CTCTCTTGGACATGGCTCTT+TGG | 0.255477 | 3.2:-52469460 | MS.gene04119:CDS |
| AAAGAACTTCATCAATAAAT+TGG | 0.266413 | 3.2:-52469091 | MS.gene04119:CDS |
| ACATGAATCAGTGGAGATTT+TGG | 0.267981 | 3.2:-52469307 | MS.gene04119:CDS |
| AGTCTCCTGATGGCACTAAA+TGG | 0.295161 | 3.2:-52469554 | MS.gene04119:CDS |
| TTTACTGAAAATTACTCTCT+TGG | 0.354240 | 3.2:-52469474 | MS.gene04119:CDS |
| TCCTGAGCTCTAGCATCCTT+TGG | 0.372162 | 3.2:+52469068 | None:intergenic |
| TGGTGAGATTTGGTTGGAAA+AGG | 0.389295 | 3.2:-52469508 | MS.gene04119:CDS |
| TTGAATATAAAGGAACTTCC+AGG | 0.390030 | 3.2:-52469431 | MS.gene04119:CDS |
| TTGGTGATGTTTGAATATAA+AGG | 0.393557 | 3.2:-52469441 | MS.gene04119:CDS |
| AATCTATTTCCACTGCATTC+CGG | 0.411258 | 3.2:+52469388 | None:intergenic |
| TCTCATCAAGCCAATTAATC+TGG | 0.435253 | 3.2:-52469003 | MS.gene04119:CDS |
| ATTGGCCGTCGCCTTTCTGC+GGG | 0.435935 | 3.2:-52468767 | MS.gene04119:CDS |
| ACTTTCCATTTAGTGCCATC+AGG | 0.440549 | 3.2:+52469549 | None:intergenic |
| AGAGAAAGTGGACTGAAATC+AGG | 0.441039 | 3.2:-52468728 | MS.gene04119:CDS |
| TGTCTCCTAGTAAACTCATT+TGG | 0.453985 | 3.2:+52469609 | None:intergenic |
| GCCGTCGCCTTTCTGCGGGC+TGG | 0.456110 | 3.2:-52468763 | MS.gene04119:CDS |
| AAATACCAAATGAGTTTACT+AGG | 0.476109 | 3.2:-52469614 | MS.gene04119:CDS |
| AATTGGCCGTCGCCTTTCTG+CGG | 0.476230 | 3.2:-52468768 | MS.gene04119:CDS |
| AATCGATGGTGAGATTTGGT+TGG | 0.480662 | 3.2:-52469514 | MS.gene04119:CDS |
| AGAATGTGATGCTGCTGATT+GGG | 0.480788 | 3.2:-52468835 | MS.gene04119:CDS |
| AAGAATGTGATGCTGCTGAT+TGG | 0.482287 | 3.2:-52468836 | MS.gene04119:CDS |
| TACTTATTTGCAAGAGAAAG+TGG | 0.484810 | 3.2:-52468740 | MS.gene04119:CDS |
| AGATTTGGTTGGAAAAGGGT+TGG | 0.493581 | 3.2:-52469503 | MS.gene04119:CDS |
| CTTATGTGGTCGAGGAGAAA+CGG | 0.495106 | 3.2:+52469242 | None:intergenic |
| CGACCACATAAGAAAGTTCG+AGG | 0.495617 | 3.2:-52469231 | MS.gene04119:intron |
| TAAAGGGGTTATTGAGAACA+AGG | 0.498536 | 3.2:-52468861 | MS.gene04119:CDS |
| TTGATGTACAAATATTTGAC+CGG | 0.506165 | 3.2:-52469407 | MS.gene04119:CDS |
| GCCAAAGGATGCTAGAGCTC+AGG | 0.513948 | 3.2:-52469069 | MS.gene04119:CDS |
| GGTGAGATTTGGTTGGAAAA+GGG | 0.515702 | 3.2:-52469507 | MS.gene04119:CDS |
| AAACCTCGAACTTTCTTATG+TGG | 0.519561 | 3.2:+52469228 | None:intergenic |
| CGAACTTTCTTATGTGGTCG+AGG | 0.535602 | 3.2:+52469234 | None:intergenic |
| GGGAAGGATAGAACTTCCTC+TGG | 0.541117 | 3.2:+52469945 | None:intergenic |
| AAATATTTGTACATCAAACC+TGG | 0.549822 | 3.2:+52469413 | None:intergenic |
| ACCAGCCCGCAGAAAGGCGA+CGG | 0.552188 | 3.2:+52468762 | None:intergenic |
| TCAGGAGACTTTATCAACAC+TGG | 0.553370 | 3.2:+52469567 | None:intergenic |
| TAATCTGGTAGAACATACTC+TGG | 0.560062 | 3.2:-52468988 | MS.gene04119:intron |
| GATAGAACTTCCTCTGGCCA+TGG | 0.562311 | 3.2:+52469951 | None:intergenic |
| TGCTGATTGGGAAAAGATCA+TGG | 0.586680 | 3.2:-52468823 | MS.gene04119:CDS |
| TGAATGGCTTAATCGGAAGA+AGG | 0.588393 | 3.2:-52469283 | MS.gene04119:CDS |
| TTCATCAATAAATTGGCCAA+AGG | 0.589930 | 3.2:-52469084 | MS.gene04119:CDS |
| AATATTTGACCGGAATGCAG+TGG | 0.607234 | 3.2:-52469397 | MS.gene04119:CDS |
| ATAAGTACCAGCCCGCAGAA+AGG | 0.609979 | 3.2:+52468756 | None:intergenic |
| AATGAGTTTACTAGGAGACA+TGG | 0.629813 | 3.2:-52469606 | MS.gene04119:CDS |
| GAAAATTACTCTCTTGGACA+TGG | 0.632483 | 3.2:-52469468 | MS.gene04119:CDS |
| GTGTTGATAAAGTCTCCTGA+TGG | 0.651956 | 3.2:-52469564 | MS.gene04119:CDS |
| TGTGGTCGAGGAGAAACGGA+AGG | 0.658286 | 3.2:+52469246 | None:intergenic |
| ACTCTTTCATCCATGGCCAG+AGG | 0.664430 | 3.2:-52469961 | None:intergenic |
| TAGTGATGAACATGAATCAG+TGG | 0.678456 | 3.2:-52469316 | MS.gene04119:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CTAAAGTAAATAGTATTAAT+AGG | + | chr3.2:52468748-52468767 | None:intergenic | 15.0% |
| !! | AAAGAACTTCATCAATAAAT+TGG | - | chr3.2:52469522-52469541 | MS.gene04119:CDS | 20.0% |
| !! | ATACAATTATTCTTTCTAGA+AGG | + | chr3.2:52468931-52468950 | None:intergenic | 20.0% |
| !!! | TAGCACTAGAAATTTTATTA+TGG | - | chr3.2:52468876-52468895 | MS.gene04119:CDS | 20.0% |
| ! | AAATACCAAATGAGTTTACT+AGG | - | chr3.2:52468999-52469018 | MS.gene04119:CDS | 25.0% |
| ! | AAATATTTGTACATCAAACC+TGG | + | chr3.2:52469203-52469222 | None:intergenic | 25.0% |
| ! | GTTTATTGGAAAAAAATCGA+TGG | - | chr3.2:52469085-52469104 | MS.gene04119:CDS | 25.0% |
| ! | TAAAAATTAAAGAACCCCTT+TGG | + | chr3.2:52468975-52468994 | None:intergenic | 25.0% |
| ! | TAAAATAGAGAAGAAACACT+TGG | + | chr3.2:52469461-52469480 | None:intergenic | 25.0% |
| ! | TTGATGTACAAATATTTGAC+CGG | - | chr3.2:52469206-52469225 | MS.gene04119:intron | 25.0% |
| ! | TTTACTGAAAATTACTCTCT+TGG | - | chr3.2:52469139-52469158 | MS.gene04119:intron | 25.0% |
| ! | TTTCTTTACAGTATACGTAA+TGG | - | chr3.2:52469424-52469443 | MS.gene04119:CDS | 25.0% |
| !! | AGTCTGTACCAAATTTTAAA+GGG | - | chr3.2:52469736-52469755 | MS.gene04119:intron | 25.0% |
| !!! | CAATCTTTTGAAGATTAGTT+TGG | + | chr3.2:52468717-52468736 | None:intergenic | 25.0% |
| !!! | TCAATAACCCCTTTAAAATT+TGG | + | chr3.2:52469747-52469766 | None:intergenic | 25.0% |
| !!! | TTGGTGATGTTTGAATATAA+AGG | - | chr3.2:52469172-52469191 | MS.gene04119:intron | 25.0% |
| AAAAAATCGATGGTGAGATT+TGG | - | chr3.2:52469095-52469114 | MS.gene04119:CDS | 30.0% | |
| GCACTAAATGGAAAGTTTAT+TGG | - | chr3.2:52469071-52469090 | MS.gene04119:CDS | 30.0% | |
| GTATGTTCTACCAGATTAAT+TGG | + | chr3.2:52469623-52469642 | None:intergenic | 30.0% | |
| TACATTTCACACATATATGC+AGG | - | chr3.2:52469479-52469498 | MS.gene04119:CDS | 30.0% | |
| TACTTATTTGCAAGAGAAAG+TGG | - | chr3.2:52469873-52469892 | MS.gene04119:intron | 30.0% | |
| TTCATCAATAAATTGGCCAA+AGG | - | chr3.2:52469529-52469548 | MS.gene04119:CDS | 30.0% | |
| TTGAATATAAAGGAACTTCC+AGG | - | chr3.2:52469182-52469201 | MS.gene04119:intron | 30.0% | |
| ! | CAGTCTGTACCAAATTTTAA+AGG | - | chr3.2:52469735-52469754 | MS.gene04119:intron | 30.0% |
| ! | TTTTGGATGAATGGCTTAAT+CGG | - | chr3.2:52469323-52469342 | MS.gene04119:CDS | 30.0% |
| !! | AATGATTTTGAAGAAACGGA+TGG | + | chr3.2:52468692-52468711 | None:intergenic | 30.0% |
| !! | ATGATTTTGAAGAAACGGAT+GGG | + | chr3.2:52468691-52468710 | None:intergenic | 30.0% |
| !! | GGAGAATGATTTTGAAGAAA+CGG | + | chr3.2:52468696-52468715 | None:intergenic | 30.0% |
| !! | GTCTGTACCAAATTTTAAAG+GGG | - | chr3.2:52469737-52469756 | MS.gene04119:intron | 30.0% |
| AAACCTCGAACTTTCTTATG+TGG | + | chr3.2:52469388-52469407 | None:intergenic | 35.0% | |
| AATCTATTTCCACTGCATTC+CGG | + | chr3.2:52469228-52469247 | None:intergenic | 35.0% | |
| AATGAGTTTACTAGGAGACA+TGG | - | chr3.2:52469007-52469026 | MS.gene04119:CDS | 35.0% | |
| ACATAAGAAAGTTCGAGGTT+TGG | - | chr3.2:52469387-52469406 | MS.gene04119:CDS | 35.0% | |
| CGTTCTTATGAGAGCAAAAT+TGG | - | chr3.2:52469828-52469847 | MS.gene04119:intron | 35.0% | |
| GAAAATTACTCTCTTGGACA+TGG | - | chr3.2:52469145-52469164 | MS.gene04119:intron | 35.0% | |
| TAAAGGGGTTATTGAGAACA+AGG | - | chr3.2:52469752-52469771 | MS.gene04119:intron | 35.0% | |
| TAATCTGGTAGAACATACTC+TGG | - | chr3.2:52469625-52469644 | MS.gene04119:intron | 35.0% | |
| TAGTGATGAACATGAATCAG+TGG | - | chr3.2:52469297-52469316 | MS.gene04119:CDS | 35.0% | |
| TCTCATCAAGCCAATTAATC+TGG | - | chr3.2:52469610-52469629 | MS.gene04119:CDS | 35.0% | |
| TGTCTCCTAGTAAACTCATT+TGG | + | chr3.2:52469007-52469026 | None:intergenic | 35.0% | |
| ! | ACATGAATCAGTGGAGATTT+TGG | - | chr3.2:52469306-52469325 | MS.gene04119:CDS | 35.0% |
| ! | ACCATTTTCTAAGTGACCAA+AGG | - | chr3.2:52468956-52468975 | MS.gene04119:intron | 35.0% |
| ! | CATTTTCTAAGTGACCAAAG+GGG | - | chr3.2:52468958-52468977 | MS.gene04119:intron | 35.0% |
| ! | CCATTTTCTAAGTGACCAAA+GGG | - | chr3.2:52468957-52468976 | MS.gene04119:intron | 35.0% |
| AAGAATGTGATGCTGCTGAT+TGG | - | chr3.2:52469777-52469796 | MS.gene04119:intron | 40.0% | |
| AATATTTGACCGGAATGCAG+TGG | - | chr3.2:52469216-52469235 | MS.gene04119:intron | 40.0% | |
| ACTTTCCATTTAGTGCCATC+AGG | + | chr3.2:52469067-52469086 | None:intergenic | 40.0% | |
| CCCTTTGGTCACTTAGAAAA+TGG | + | chr3.2:52468960-52468979 | None:intergenic | 40.0% | |
| TCAGGAGACTTTATCAACAC+TGG | + | chr3.2:52469049-52469068 | None:intergenic | 40.0% | |
| TGAATGGCTTAATCGGAAGA+AGG | - | chr3.2:52469330-52469349 | MS.gene04119:CDS | 40.0% | |
| ! | AATCGATGGTGAGATTTGGT+TGG | - | chr3.2:52469099-52469118 | MS.gene04119:CDS | 40.0% |
| ! | AGAATGTGATGCTGCTGATT+GGG | - | chr3.2:52469778-52469797 | MS.gene04119:intron | 40.0% |
| ! | AGATTTGGTTGGAAAAGGGT+TGG | - | chr3.2:52469110-52469129 | MS.gene04119:CDS | 40.0% |
| ! | CAGTGGAGATTTTGGATGAA+TGG | - | chr3.2:52469314-52469333 | MS.gene04119:CDS | 40.0% |
| ! | GGTGAGATTTGGTTGGAAAA+GGG | - | chr3.2:52469106-52469125 | MS.gene04119:CDS | 40.0% |
| ! | GTGTTGATAAAGTCTCCTGA+TGG | - | chr3.2:52469049-52469068 | MS.gene04119:CDS | 40.0% |
| ! | TGCTGATTGGGAAAAGATCA+TGG | - | chr3.2:52469790-52469809 | MS.gene04119:intron | 40.0% |
| ! | TGGTGAGATTTGGTTGGAAA+AGG | - | chr3.2:52469105-52469124 | MS.gene04119:CDS | 40.0% |
| !! | AGAGAAAGTGGACTGAAATC+AGG | - | chr3.2:52469885-52469904 | MS.gene04119:intron | 40.0% |
| !! | TTTTGAAGAAACGGATGGGA+AGG | + | chr3.2:52468687-52468706 | None:intergenic | 40.0% |
| AGTCTCCTGATGGCACTAAA+TGG | - | chr3.2:52469059-52469078 | MS.gene04119:CDS | 45.0% | |
| CGAACTTTCTTATGTGGTCG+AGG | + | chr3.2:52469382-52469401 | None:intergenic | 45.0% | |
| CGACCACATAAGAAAGTTCG+AGG | - | chr3.2:52469382-52469401 | MS.gene04119:CDS | 45.0% | |
| CTGGTAGAACATACTCTGGT+AGG | - | chr3.2:52469629-52469648 | MS.gene04119:intron | 45.0% | |
| CTTATGTGGTCGAGGAGAAA+CGG | + | chr3.2:52469374-52469393 | None:intergenic | 45.0% | |
| ATAAGTACCAGCCCGCAGAA+AGG | + | chr3.2:52469860-52469879 | None:intergenic | 50.0% | |
| CATGTTGCAAGTGTGATGCG+TGG | + | chr3.2:52468787-52468806 | None:intergenic | 50.0% | |
| CTCTCTTGGACATGGCTCTT+TGG | - | chr3.2:52469153-52469172 | MS.gene04119:intron | 50.0% | |
| GGGAAGGATAGAACTTCCTC+TGG | + | chr3.2:52468671-52468690 | None:intergenic | 50.0% | |
| ! | TCCTGAGCTCTAGCATCCTT+TGG | + | chr3.2:52469548-52469567 | None:intergenic | 50.0% |
| AATTGGCCGTCGCCTTTCTG+CGG | - | chr3.2:52469845-52469864 | MS.gene04119:intron | 55.0% | |
| GCCAAAGGATGCTAGAGCTC+AGG | - | chr3.2:52469544-52469563 | MS.gene04119:CDS | 55.0% | |
| TGTGGTCGAGGAGAAACGGA+AGG | + | chr3.2:52469370-52469389 | None:intergenic | 55.0% | |
| ATTGGCCGTCGCCTTTCTGC+GGG | - | chr3.2:52469846-52469865 | MS.gene04119:intron | 60.0% | |
| ACCAGCCCGCAGAAAGGCGA+CGG | + | chr3.2:52469854-52469873 | None:intergenic | 65.0% | |
| GCCGTCGCCTTTCTGCGGGC+TGG | - | chr3.2:52469850-52469869 | MS.gene04119:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 52468664 | 52469971 | 52468664 | ID=MS.gene04119 |
| chr3.2 | mRNA | 52468664 | 52469971 | 52468664 | ID=MS.gene04119.t1;Parent=MS.gene04119 |
| chr3.2 | exon | 52469900 | 52469971 | 52469900 | ID=MS.gene04119.t1.exon1;Parent=MS.gene04119.t1 |
| chr3.2 | CDS | 52469900 | 52469971 | 52469900 | ID=cds.MS.gene04119.t1;Parent=MS.gene04119.t1 |
| chr3.2 | exon | 52469232 | 52469637 | 52469232 | ID=MS.gene04119.t1.exon2;Parent=MS.gene04119.t1 |
| chr3.2 | CDS | 52469232 | 52469637 | 52469232 | ID=cds.MS.gene04119.t1;Parent=MS.gene04119.t1 |
| chr3.2 | exon | 52468989 | 52469134 | 52468989 | ID=MS.gene04119.t1.exon3;Parent=MS.gene04119.t1 |
| chr3.2 | CDS | 52468989 | 52469134 | 52468989 | ID=cds.MS.gene04119.t1;Parent=MS.gene04119.t1 |
| chr3.2 | exon | 52468664 | 52468897 | 52468664 | ID=MS.gene04119.t1.exon4;Parent=MS.gene04119.t1 |
| chr3.2 | CDS | 52468664 | 52468897 | 52468664 | ID=cds.MS.gene04119.t1;Parent=MS.gene04119.t1 |
| Gene Sequence |
| Protein sequence |
