Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene04124.t1 | XP_024634637.1 | 92.8 | 264 | 19 | 0 | 1 | 264 | 1 | 264 | 1.90E-141 | 511.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene04124.t1 | Q8L3W1 | 26.5 | 332 | 176 | 8 | 12 | 280 | 6 | 332 | 1.2e-22 | 108.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene04124.t1 | G8A2Z5 | 74.2 | 283 | 62 | 3 | 1 | 282 | 1 | 273 | 8.4e-115 | 422.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene04124.t1 | TF | B3 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene04124.t1 | MTR_3g061340 | 74.205 | 283 | 62 | 3 | 1 | 282 | 1 | 273 | 1.07e-150 | 422 |
| MS.gene04124.t1 | MTR_3g061320 | 73.404 | 282 | 71 | 1 | 1 | 282 | 1 | 278 | 1.28e-150 | 422 |
| MS.gene04124.t1 | MTR_3g061350 | 72.792 | 283 | 76 | 1 | 1 | 282 | 1 | 283 | 1.40e-150 | 422 |
| MS.gene04124.t1 | MTR_3g061370 | 72.085 | 283 | 75 | 2 | 1 | 282 | 1 | 280 | 1.86e-148 | 417 |
| MS.gene04124.t1 | MTR_3g061310 | 71.479 | 284 | 79 | 1 | 1 | 282 | 1 | 284 | 4.97e-148 | 416 |
| MS.gene04124.t1 | MTR_3g061330 | 72.619 | 252 | 66 | 3 | 1 | 250 | 1 | 251 | 1.89e-130 | 370 |
| MS.gene04124.t1 | MTR_3g061290 | 88.889 | 162 | 18 | 0 | 1 | 162 | 1 | 162 | 3.06e-104 | 302 |
| MS.gene04124.t1 | MTR_3g061300 | 94.488 | 127 | 7 | 0 | 161 | 287 | 1 | 127 | 2.49e-87 | 256 |
| MS.gene04124.t1 | MTR_3g061220 | 67.939 | 131 | 28 | 2 | 1 | 131 | 1 | 117 | 4.75e-58 | 182 |
| MS.gene04124.t1 | MTR_1g035460 | 34.708 | 291 | 149 | 9 | 26 | 282 | 2 | 285 | 1.24e-47 | 164 |
| MS.gene04124.t1 | MTR_8g103940 | 32.484 | 314 | 162 | 7 | 4 | 282 | 31 | 329 | 2.15e-45 | 160 |
| MS.gene04124.t1 | MTR_8g103940 | 37.391 | 115 | 62 | 4 | 174 | 282 | 383 | 493 | 2.61e-14 | 73.2 |
| MS.gene04124.t1 | MTR_1g108780 | 31.561 | 301 | 153 | 9 | 21 | 286 | 10 | 292 | 3.18e-41 | 148 |
| MS.gene04124.t1 | MTR_1g108780 | 26.408 | 284 | 168 | 12 | 12 | 282 | 201 | 456 | 1.21e-12 | 68.2 |
| MS.gene04124.t1 | MTR_5g044670 | 30.363 | 303 | 170 | 11 | 12 | 286 | 16 | 305 | 6.59e-41 | 144 |
| MS.gene04124.t1 | MTR_7g050710 | 30.976 | 297 | 181 | 8 | 9 | 282 | 10 | 305 | 1.17e-39 | 141 |
| MS.gene04124.t1 | MTR_7g050560 | 33.910 | 289 | 166 | 8 | 9 | 282 | 10 | 288 | 3.54e-39 | 139 |
| MS.gene04124.t1 | MTR_3g098790 | 29.866 | 298 | 175 | 7 | 9 | 282 | 10 | 297 | 2.33e-36 | 132 |
| MS.gene04124.t1 | MTR_7g050580 | 30.282 | 284 | 183 | 8 | 9 | 282 | 10 | 288 | 7.43e-33 | 123 |
| MS.gene04124.t1 | MTR_1g035640 | 29.329 | 283 | 181 | 6 | 12 | 285 | 9 | 281 | 8.55e-33 | 125 |
| MS.gene04124.t1 | MTR_4g119990 | 30.945 | 307 | 169 | 12 | 10 | 282 | 13 | 310 | 7.85e-32 | 121 |
| MS.gene04124.t1 | MTR_7g050720 | 29.642 | 307 | 183 | 8 | 9 | 282 | 7 | 313 | 1.48e-30 | 117 |
| MS.gene04124.t1 | MTR_7g050590 | 30.466 | 279 | 170 | 10 | 26 | 282 | 2 | 278 | 8.53e-29 | 112 |
| MS.gene04124.t1 | MTR_1g035570 | 28.571 | 287 | 185 | 7 | 12 | 285 | 9 | 288 | 1.24e-27 | 110 |
| MS.gene04124.t1 | MTR_6g043890 | 28.369 | 282 | 178 | 9 | 10 | 270 | 13 | 291 | 1.92e-26 | 106 |
| MS.gene04124.t1 | MTR_3g005480 | 30.357 | 280 | 142 | 10 | 11 | 280 | 20 | 256 | 5.04e-25 | 101 |
| MS.gene04124.t1 | MTR_5g070440 | 25.352 | 284 | 169 | 5 | 11 | 285 | 20 | 269 | 7.36e-25 | 100 |
| MS.gene04124.t1 | MTR_3g005490 | 28.622 | 283 | 152 | 9 | 11 | 285 | 20 | 260 | 9.70e-24 | 97.8 |
| MS.gene04124.t1 | MTR_3g005460 | 26.441 | 295 | 174 | 8 | 1 | 282 | 251 | 515 | 6.20e-23 | 98.6 |
| MS.gene04124.t1 | MTR_3g005460 | 26.523 | 279 | 148 | 7 | 11 | 285 | 24 | 249 | 1.57e-18 | 85.5 |
| MS.gene04124.t1 | MTR_6g061070 | 25.962 | 312 | 185 | 10 | 10 | 282 | 16 | 320 | 7.07e-23 | 98.2 |
| MS.gene04124.t1 | MTR_3g005420 | 25.965 | 285 | 166 | 6 | 11 | 285 | 288 | 537 | 9.97e-23 | 97.8 |
| MS.gene04124.t1 | MTR_3g005420 | 25.540 | 278 | 139 | 7 | 11 | 277 | 39 | 259 | 1.99e-18 | 85.5 |
| MS.gene04124.t1 | MTR_4g068320 | 36.364 | 132 | 74 | 2 | 12 | 133 | 6 | 137 | 5.20e-22 | 95.1 |
| MS.gene04124.t1 | MTR_1g035620 | 25.253 | 297 | 180 | 10 | 9 | 285 | 6 | 280 | 1.12e-20 | 91.3 |
| MS.gene04124.t1 | MTR_3g005495 | 29.091 | 275 | 138 | 8 | 11 | 277 | 242 | 467 | 1.44e-20 | 91.3 |
| MS.gene04124.t1 | MTR_3g005495 | 42.857 | 84 | 48 | 0 | 25 | 108 | 28 | 111 | 4.64e-17 | 81.3 |
| MS.gene04124.t1 | MTR_1g035440 | 43.137 | 102 | 55 | 2 | 10 | 108 | 13 | 114 | 3.55e-20 | 87.8 |
| MS.gene04124.t1 | MTR_1g034240 | 35.938 | 128 | 78 | 2 | 12 | 135 | 7 | 134 | 6.27e-20 | 89.4 |
| MS.gene04124.t1 | MTR_7g050640 | 44.792 | 96 | 51 | 2 | 10 | 103 | 11 | 106 | 8.22e-20 | 83.2 |
| MS.gene04124.t1 | MTR_1g050845 | 24.000 | 300 | 168 | 10 | 9 | 285 | 6 | 268 | 1.73e-19 | 89.0 |
| MS.gene04124.t1 | MTR_1g035650 | 42.157 | 102 | 55 | 2 | 9 | 108 | 6 | 105 | 3.37e-19 | 84.0 |
| MS.gene04124.t1 | MTR_1g035510 | 28.571 | 231 | 134 | 9 | 26 | 235 | 2 | 222 | 5.45e-19 | 84.0 |
| MS.gene04124.t1 | MTR_3g005420 | 25.540 | 278 | 139 | 7 | 11 | 277 | 20 | 240 | 1.48e-18 | 85.5 |
| MS.gene04124.t1 | MTR_1g021360 | 24.516 | 310 | 185 | 9 | 10 | 287 | 182 | 474 | 1.97e-18 | 85.1 |
| MS.gene04124.t1 | MTR_1g034210 | 38.889 | 108 | 62 | 2 | 12 | 117 | 7 | 112 | 1.28e-17 | 81.6 |
| MS.gene04124.t1 | MTR_1g034210 | 38.889 | 108 | 62 | 2 | 12 | 117 | 7 | 112 | 1.96e-17 | 81.6 |
| MS.gene04124.t1 | MTR_3g005440 | 35.897 | 117 | 73 | 1 | 13 | 127 | 23 | 139 | 2.94e-17 | 81.6 |
| MS.gene04124.t1 | MTR_3g005440 | 26.415 | 212 | 126 | 4 | 11 | 219 | 241 | 425 | 5.22e-14 | 72.0 |
| MS.gene04124.t1 | MTR_1g035480 | 32.624 | 141 | 84 | 5 | 2 | 134 | 7 | 144 | 8.59e-16 | 74.3 |
| MS.gene04124.t1 | MTR_1g035520 | 26.006 | 323 | 188 | 12 | 4 | 282 | 67 | 382 | 2.37e-15 | 75.9 |
| MS.gene04124.t1 | MTR_1g035470 | 33.824 | 136 | 80 | 4 | 26 | 155 | 2 | 133 | 4.45e-15 | 71.2 |
| MS.gene04124.t1 | MTR_1g033740 | 33.333 | 129 | 76 | 5 | 10 | 131 | 20 | 145 | 1.02e-14 | 71.6 |
| MS.gene04124.t1 | MTR_1g035500 | 32.624 | 141 | 84 | 5 | 2 | 134 | 15 | 152 | 8.89e-14 | 68.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene04124.t1 | AT3G18990 | 27.410 | 332 | 173 | 10 | 12 | 280 | 6 | 332 | 7.58e-30 | 115 |
| MS.gene04124.t1 | AT3G18990 | 27.410 | 332 | 173 | 10 | 12 | 280 | 6 | 332 | 2.29e-29 | 115 |
| MS.gene04124.t1 | AT4G01580 | 32.847 | 137 | 83 | 3 | 12 | 145 | 30 | 160 | 5.27e-19 | 83.2 |
| MS.gene04124.t1 | AT1G49475 | 39.831 | 118 | 67 | 3 | 12 | 127 | 34 | 149 | 9.17e-19 | 82.4 |
| MS.gene04124.t1 | AT3G18960 | 38.384 | 99 | 59 | 1 | 12 | 108 | 30 | 128 | 3.73e-17 | 78.2 |
| MS.gene04124.t1 | AT3G18960 | 38.384 | 99 | 59 | 1 | 12 | 108 | 30 | 128 | 4.08e-17 | 78.6 |
| MS.gene04124.t1 | AT4G33280 | 25.658 | 304 | 194 | 11 | 10 | 286 | 23 | 321 | 5.55e-17 | 80.1 |
| MS.gene04124.t1 | AT3G18960 | 40.476 | 84 | 50 | 0 | 25 | 108 | 8 | 91 | 1.23e-14 | 70.9 |
| MS.gene04124.t1 | AT4G31640 | 26.449 | 276 | 152 | 12 | 11 | 280 | 13 | 243 | 2.68e-13 | 69.7 |
| MS.gene04124.t1 | AT5G18090 | 24.915 | 293 | 185 | 10 | 12 | 280 | 18 | 299 | 2.69e-11 | 63.5 |
| MS.gene04124.t1 | AT4G31650 | 23.077 | 273 | 156 | 8 | 11 | 276 | 13 | 238 | 4.97e-11 | 63.5 |
Find 57 sgRNAs with CRISPR-Local
Find 133 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAGTGTGTACCAACTTTAAA+TGG | 0.174261 | 3.2:+52261951 | MS.gene04124:intron |
| GTACTAAATGGAAAGTTTAT+TGG | 0.221899 | 3.2:+52260367 | MS.gene04124:CDS |
| CTCTCTTGGACATGGCTGTT+TGG | 0.307883 | 3.2:+52260449 | MS.gene04124:CDS |
| AGTCTATTTCTACTGCATTC+TGG | 0.324981 | 3.2:-52260521 | None:intergenic |
| AGAGTCCTGATGGTACTAAA+TGG | 0.342374 | 3.2:+52260355 | MS.gene04124:CDS |
| CAAGTCTTTGAAGATTAGAT+TGG | 0.342933 | 3.2:-52260057 | None:intergenic |
| TGTTTCCTTGTAAACTCATT+TGG | 0.356165 | 3.2:-52260300 | None:intergenic |
| TTTACTGAAAATTACTCTCT+TGG | 0.363298 | 3.2:+52260435 | MS.gene04124:CDS |
| TGGTGAGATTTGGTTTGAAA+AGG | 0.373936 | 3.2:+52260401 | MS.gene04124:CDS |
| CTACTCACCTAGCAGAAAAT+CGG | 0.374095 | 3.2:+52261825 | MS.gene04124:CDS |
| AAAGAACTACATCATGGAAT+TGG | 0.395138 | 3.2:+52261726 | MS.gene04124:CDS |
| GATACATTAAGTGTCACTTT+TGG | 0.397798 | 3.2:-52262183 | None:intergenic |
| ACATTTCTAGCCTCACAATA+AGG | 0.400255 | 3.2:-52262044 | None:intergenic |
| TCCTGAGCTCTAGCTCCCTT+TGG | 0.408256 | 3.2:-52261749 | None:intergenic |
| ACTGATAAACAAGAAAGATA+TGG | 0.417726 | 3.2:+52262142 | MS.gene04124:CDS |
| TCAATAACCCCATTTAAAGT+TGG | 0.446011 | 3.2:-52261960 | None:intergenic |
| CGACCACATAAGAAAGTAAG+AGG | 0.449011 | 3.2:+52260672 | MS.gene04124:CDS |
| AGTGTGTACCAACTTTAAAT+GGG | 0.455268 | 3.2:+52261952 | MS.gene04124:intron |
| TGTGGTCGAGGAGAAAATAA+TGG | 0.464278 | 3.2:-52260657 | None:intergenic |
| AAGTTTGATGTAGTAATACT+TGG | 0.466742 | 3.2:+52260498 | MS.gene04124:CDS |
| ACCACTTTCTCTTGCAAACA+AGG | 0.468664 | 3.2:-52262090 | None:intergenic |
| AGATTTGGTTTGAAAAGGGT+TGG | 0.470784 | 3.2:+52260406 | MS.gene04124:CDS |
| TCTTGCAAACAAGGACCAAC+CGG | 0.476293 | 3.2:-52262081 | None:intergenic |
| ACTTTCCATTTAGTACCATC+AGG | 0.482876 | 3.2:-52260360 | None:intergenic |
| ATACCTCTTACTTTCTTATG+TGG | 0.489376 | 3.2:-52260675 | None:intergenic |
| AATGTTCGCCGCCTCTCGGC+CGG | 0.489655 | 3.2:+52262062 | MS.gene04124:CDS |
| TTGGTGGTGTTTGAATATAA+AGG | 0.491592 | 3.2:+52260468 | MS.gene04124:CDS |
| AGTATGTGATGCTGCAGATT+GGG | 0.492313 | 3.2:+52261994 | MS.gene04124:CDS |
| GGTGAGATTTGGTTTGAAAA+GGG | 0.495938 | 3.2:+52260402 | MS.gene04124:CDS |
| CTTACTTTCTTATGTGGTCG+AGG | 0.501623 | 3.2:-52260669 | None:intergenic |
| TCTTGGACATGGCTGTTTGG+TGG | 0.505898 | 3.2:+52260452 | MS.gene04124:CDS |
| TAGAAATGTTCGCCGCCTCT+CGG | 0.526048 | 3.2:+52262058 | MS.gene04124:CDS |
| TCCTTGTTTGCAAGAGAAAG+TGG | 0.529022 | 3.2:+52262089 | MS.gene04124:CDS |
| ACATCATGGAATTGGCCAAA+GGG | 0.541191 | 3.2:+52261734 | MS.gene04124:CDS |
| AGAGAAAGTGGTCTGCAAGT+AGG | 0.546476 | 3.2:+52262101 | MS.gene04124:CDS |
| TACTCACCTAGCAGAAAATC+GGG | 0.546681 | 3.2:+52261826 | MS.gene04124:CDS |
| AAGTATTACTACATCAAACT+TGG | 0.549129 | 3.2:-52260496 | None:intergenic |
| GCCAAAGGGAGCTAGAGCTC+AGG | 0.549833 | 3.2:+52261748 | MS.gene04124:CDS |
| TTCGCCGCCTCTCGGCCGGT+TGG | 0.551560 | 3.2:+52262066 | MS.gene04124:CDS |
| AAATACCAAATGAGTTTACA+AGG | 0.560882 | 3.2:+52260295 | MS.gene04124:CDS |
| AAACTCCATCATCCATGGCT+AGG | 0.568367 | 3.2:+52259993 | None:intergenic |
| TGCAGATTGGGAAAAGATCA+TGG | 0.571416 | 3.2:+52262006 | MS.gene04124:CDS |
| TCAGGACTCTTGATCAACAC+TGG | 0.571999 | 3.2:-52260342 | None:intergenic |
| CTAATCAAAGAACTACATCA+TGG | 0.573456 | 3.2:+52261720 | MS.gene04124:CDS |
| AAGTATGTGATGCTGCAGAT+TGG | 0.577298 | 3.2:+52261993 | MS.gene04124:CDS |
| AGGACCAACCGGCCGAGAGG+CGG | 0.587468 | 3.2:-52262070 | None:intergenic |
| GGTAGCATTTCTCCTAGCCA+TGG | 0.598825 | 3.2:-52260005 | None:intergenic |
| GTGTTGATCAAGAGTCCTGA+TGG | 0.607925 | 3.2:+52260345 | MS.gene04124:CDS |
| TACATCATGGAATTGGCCAA+AGG | 0.610272 | 3.2:+52261733 | MS.gene04124:CDS |
| GATGATGAAAATGACAATGT+TGG | 0.615278 | 3.2:+52260564 | MS.gene04124:CDS |
| GAAACTGCTTCCTTATTGTG+AGG | 0.617392 | 3.2:+52262034 | MS.gene04124:CDS |
| GAAAATTACTCTCTTGGACA+TGG | 0.632483 | 3.2:+52260441 | MS.gene04124:CDS |
| AATGAGTTTACAAGGAAACA+TGG | 0.634098 | 3.2:+52260303 | MS.gene04124:CDS |
| ACAAGGACCAACCGGCCGAG+AGG | 0.636650 | 3.2:-52262073 | None:intergenic |
| GTGTGTACCAACTTTAAATG+GGG | 0.652978 | 3.2:+52261953 | MS.gene04124:intron |
| TCACCTAGCAGAAAATCGGG+TGG | 0.717171 | 3.2:+52261829 | MS.gene04124:CDS |
| GGTCGAGGAGAAAATAATGG+CGG | 0.736189 | 3.2:-52260654 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAAATGAAAAAAATTTAGA+AGG | - | chr3.2:52261395-52261414 | None:intergenic | 10.0% |
| !! | TAAAATCAAATGTATATTTA+GGG | + | chr3.2:52261488-52261507 | MS.gene04124:intron | 10.0% |
| !! | AAAATCAAATGTATATTTAG+GGG | + | chr3.2:52261489-52261508 | MS.gene04124:intron | 15.0% |
| !! | CTAAAATCAAATGTATATTT+AGG | + | chr3.2:52261487-52261506 | MS.gene04124:intron | 15.0% |
| !! | TTATTTAACCCTAAATTAAA+TGG | + | chr3.2:52261522-52261541 | MS.gene04124:intron | 15.0% |
| !!! | ATGTTATAGCATTTAATTTT+TGG | - | chr3.2:52261107-52261126 | None:intergenic | 15.0% |
| !!! | ATTTAATTTAGGGTTAAATA+AGG | - | chr3.2:52261523-52261542 | None:intergenic | 15.0% |
| !!! | TATAGATGAAATTTTTTAGA+GGG | + | chr3.2:52261463-52261482 | MS.gene04124:intron | 15.0% |
| !!! | TTATAGATGAAATTTTTTAG+AGG | + | chr3.2:52261462-52261481 | MS.gene04124:intron | 15.0% |
| !! | AAAATTATCCTTCAATAATG+AGG | - | chr3.2:52261252-52261271 | None:intergenic | 20.0% |
| !! | AAACCACTTACAATAAAATA+CGG | + | chr3.2:52261578-52261597 | MS.gene04124:intron | 20.0% |
| !! | AAATCAAATGTATATTTAGG+GGG | + | chr3.2:52261490-52261509 | MS.gene04124:intron | 20.0% |
| !! | AATCAAATGTTGGTATATTT+AGG | - | chr3.2:52261338-52261357 | None:intergenic | 20.0% |
| !! | ACGATCATTAGTAAAAAAAA+TGG | + | chr3.2:52260754-52260773 | MS.gene04124:intron | 20.0% |
| !! | ATCAAATGTTGGTATATTTA+GGG | - | chr3.2:52261337-52261356 | None:intergenic | 20.0% |
| !! | GTTTATTGGAAAAAAATCAA+TGG | + | chr3.2:52260381-52260400 | MS.gene04124:CDS | 20.0% |
| !! | TTTATGAGAATTGTGAAAAA+AGG | - | chr3.2:52261803-52261822 | None:intergenic | 20.0% |
| !!! | ATTTAACCCTTTAATTTAAG+TGG | - | chr3.2:52261301-52261320 | None:intergenic | 20.0% |
| !!! | TAAGTCTTTTTATTTCTAGA+AGG | + | chr3.2:52260214-52260233 | MS.gene04124:intron | 20.0% |
| !!! | TCTTTTCCACTTAAATTAAA+GGG | + | chr3.2:52261292-52261311 | MS.gene04124:intron | 20.0% |
| ! | AAAAAATCAATGGTGAGATT+TGG | + | chr3.2:52260391-52260410 | MS.gene04124:CDS | 25.0% |
| ! | AAAAATTTAAGTACCCAAGT+TGG | - | chr3.2:52260270-52260289 | None:intergenic | 25.0% |
| ! | AAAATGAAATCCAAAGACTT+TGG | - | chr3.2:52260871-52260890 | None:intergenic | 25.0% |
| ! | AAATACCAAATGAGTTTACA+AGG | + | chr3.2:52260295-52260314 | MS.gene04124:CDS | 25.0% |
| ! | AAGTATTACTACATCAAACT+TGG | - | chr3.2:52260499-52260518 | None:intergenic | 25.0% |
| ! | AAGTTTGATGTAGTAATACT+TGG | + | chr3.2:52260498-52260517 | MS.gene04124:CDS | 25.0% |
| ! | ACTGATAAACAAGAAAGATA+TGG | + | chr3.2:52262142-52262161 | MS.gene04124:CDS | 25.0% |
| ! | ATGATCTTGAAAAAATGGAT+GGG | - | chr3.2:52260034-52260053 | None:intergenic | 25.0% |
| ! | GTACTAAATGGAAAGTTTAT+TGG | + | chr3.2:52260367-52260386 | MS.gene04124:CDS | 25.0% |
| ! | TCAAATGTTGGTATATTTAG+GGG | - | chr3.2:52261336-52261355 | None:intergenic | 25.0% |
| ! | TTTACTGAAAATTACTCTCT+TGG | + | chr3.2:52260435-52260454 | MS.gene04124:CDS | 25.0% |
| !! | AACGCCTAAAGAATATTTTA+AGG | - | chr3.2:52261368-52261387 | None:intergenic | 25.0% |
| !! | AAGTCTTTGGATTTCATTTT+CGG | + | chr3.2:52260871-52260890 | MS.gene04124:intron | 25.0% |
| !! | ACGTAGAATCCATTTAATTT+AGG | - | chr3.2:52261534-52261553 | None:intergenic | 25.0% |
| !! | CGTAGAATCCATTTAATTTA+GGG | - | chr3.2:52261533-52261552 | None:intergenic | 25.0% |
| !! | CTCTTTTCCACTTAAATTAA+AGG | + | chr3.2:52261291-52261310 | MS.gene04124:intron | 25.0% |
| !! | CTTTATTTCCTCATTATTGA+AGG | + | chr3.2:52261241-52261260 | MS.gene04124:intron | 25.0% |
| !! | TATCCGTATTTTATTGTAAG+TGG | - | chr3.2:52261584-52261603 | None:intergenic | 25.0% |
| !! | TTTAGGGTTAAATAAGGAAA+TGG | - | chr3.2:52261517-52261536 | None:intergenic | 25.0% |
| !!! | ACGCCTAAAGAATATTTTAA+GGG | - | chr3.2:52261367-52261386 | None:intergenic | 25.0% |
| AAAGAACTACATCATGGAAT+TGG | + | chr3.2:52261726-52261745 | MS.gene04124:CDS | 30.0% | |
| AATGAGTTTACAAGGAAACA+TGG | + | chr3.2:52260303-52260322 | MS.gene04124:CDS | 30.0% | |
| ACCTCTACTATAAAAAGTTC+AGG | + | chr3.2:52261184-52261203 | MS.gene04124:intron | 30.0% | |
| AGTGTGTACCAACTTTAAAT+GGG | + | chr3.2:52261952-52261971 | MS.gene04124:intron | 30.0% | |
| ATACCTCTTACTTTCTTATG+TGG | - | chr3.2:52260678-52260697 | None:intergenic | 30.0% | |
| ATAGTAGAGGTTTCCATAAT+TGG | - | chr3.2:52261175-52261194 | None:intergenic | 30.0% | |
| CAAATGTTGGTATATTTAGG+GGG | - | chr3.2:52261335-52261354 | None:intergenic | 30.0% | |
| CTAATCAAAGAACTACATCA+TGG | + | chr3.2:52261720-52261739 | MS.gene04124:CDS | 30.0% | |
| GATGATCTTGAAAAAATGGA+TGG | - | chr3.2:52260035-52260054 | None:intergenic | 30.0% | |
| GATGATGAAAATGACAATGT+TGG | + | chr3.2:52260564-52260583 | MS.gene04124:CDS | 30.0% | |
| GTATAGCTCTTGACATTATT+TGG | - | chr3.2:52261085-52261104 | None:intergenic | 30.0% | |
| GTCCCCTTAAAATATTCTTT+AGG | + | chr3.2:52261361-52261380 | MS.gene04124:intron | 30.0% | |
| TACGGATATAGTACAAAAGA+TGG | + | chr3.2:52261596-52261615 | MS.gene04124:intron | 30.0% | |
| TATAGTATGTCACACTCTAT+TGG | - | chr3.2:52260931-52260950 | None:intergenic | 30.0% | |
| TGTTTCCTTGTAAACTCATT+TGG | - | chr3.2:52260303-52260322 | None:intergenic | 30.0% | |
| TTGACATTATTTGGAAAGCA+AGG | - | chr3.2:52261076-52261095 | None:intergenic | 30.0% | |
| ! | AAGAAAGTAAGAGGTATGTA+TGG | + | chr3.2:52260681-52260700 | MS.gene04124:intron | 30.0% |
| ! | CAAGTCTTTGAAGATTAGAT+TGG | - | chr3.2:52260060-52260079 | None:intergenic | 30.0% |
| ! | CATTTCACACATTTTGTGTT+TGG | + | chr3.2:52260124-52260143 | MS.gene04124:intron | 30.0% |
| ! | CTGTTGAGATTTTAGATGAA+TGG | + | chr3.2:52260604-52260623 | MS.gene04124:CDS | 30.0% |
| ! | TCAATAACCCCATTTAAAGT+TGG | - | chr3.2:52261963-52261982 | None:intergenic | 30.0% |
| ! | TCCTGAACTTTTTATAGTAG+AGG | - | chr3.2:52261188-52261207 | None:intergenic | 30.0% |
| !! | AATTGATTAGTTAGCCTTGT+GGG | + | chr3.2:52260950-52260969 | MS.gene04124:intron | 30.0% |
| !! | ATGCAATCAGTTTGTTGATA+AGG | + | chr3.2:52261030-52261049 | MS.gene04124:intron | 30.0% |
| !! | CGCCTAAAGAATATTTTAAG+GGG | - | chr3.2:52261366-52261385 | None:intergenic | 30.0% |
| !! | TAATTGATTAGTTAGCCTTG+TGG | + | chr3.2:52260949-52260968 | MS.gene04124:intron | 30.0% |
| !! | TTGGTGGTGTTTGAATATAA+AGG | + | chr3.2:52260468-52260487 | MS.gene04124:CDS | 30.0% |
| ACTTTCCATTTAGTACCATC+AGG | - | chr3.2:52260363-52260382 | None:intergenic | 35.0% | |
| AGGGGACTAAAATCAAATGT+TGG | - | chr3.2:52261348-52261367 | None:intergenic | 35.0% | |
| ATCCTTATCTTTACCACACT+GGG | + | chr3.2:52261127-52261146 | MS.gene04124:intron | 35.0% | |
| ATGTCTATGACCAAAGTCTT+TGG | + | chr3.2:52260858-52260877 | MS.gene04124:intron | 35.0% | |
| ATTAGTCACATTGAACAGCA+TGG | + | chr3.2:52261005-52261024 | MS.gene04124:intron | 35.0% | |
| CAGTGTGTACCAACTTTAAA+TGG | + | chr3.2:52261951-52261970 | MS.gene04124:intron | 35.0% | |
| CTTGAAAAAATGGATGGGAA+AGG | - | chr3.2:52260029-52260048 | None:intergenic | 35.0% | |
| GAAAATTACTCTCTTGGACA+TGG | + | chr3.2:52260441-52260460 | MS.gene04124:CDS | 35.0% | |
| GAATACTAATTTGACACCGT+TGG | + | chr3.2:52260236-52260255 | MS.gene04124:intron | 35.0% | |
| GGACGATGATCTTGAAAAAA+TGG | - | chr3.2:52260039-52260058 | None:intergenic | 35.0% | |
| GTGTGTACCAACTTTAAATG+GGG | + | chr3.2:52261953-52261972 | MS.gene04124:intron | 35.0% | |
| TACACAAATATATGCAGCTG+AGG | + | chr3.2:52261688-52261707 | MS.gene04124:intron | 35.0% | |
| TATCCTTATCTTTACCACAC+TGG | + | chr3.2:52261126-52261145 | MS.gene04124:intron | 35.0% | |
| !! | ACATTTCTAGCCTCACAATA+AGG | - | chr3.2:52262047-52262066 | None:intergenic | 35.0% |
| !! | AGATTTGGTTTGAAAAGGGT+TGG | + | chr3.2:52260406-52260425 | MS.gene04124:CDS | 35.0% |
| !! | AGTCTATTTCTACTGCATTC+TGG | - | chr3.2:52260524-52260543 | None:intergenic | 35.0% |
| !! | GGTGAGATTTGGTTTGAAAA+GGG | + | chr3.2:52260402-52260421 | MS.gene04124:CDS | 35.0% |
| !! | TGGTGAGATTTGGTTTGAAA+AGG | + | chr3.2:52260401-52260420 | MS.gene04124:CDS | 35.0% |
| AACTTATCATCTACCCAGTG+TGG | - | chr3.2:52261143-52261162 | None:intergenic | 40.0% | |
| AAGTATGTGATGCTGCAGAT+TGG | + | chr3.2:52261993-52262012 | MS.gene04124:CDS | 40.0% | |
| AATCAGGCTAAGGTCATCTT+TGG | - | chr3.2:52260988-52261007 | None:intergenic | 40.0% | |
| ACATCATGGAATTGGCCAAA+GGG | + | chr3.2:52261734-52261753 | MS.gene04124:CDS | 40.0% | |
| ACCACTTTCTCTTGCAAACA+AGG | - | chr3.2:52262093-52262112 | None:intergenic | 40.0% | |
| AGAGTCCTGATGGTACTAAA+TGG | + | chr3.2:52260355-52260374 | MS.gene04124:CDS | 40.0% | |
| AGTATGTGATGCTGCAGATT+GGG | + | chr3.2:52261994-52262013 | MS.gene04124:CDS | 40.0% | |
| AGTTGAGCAGCTTCCAATTA+TGG | + | chr3.2:52261159-52261178 | MS.gene04124:intron | 40.0% | |
| ATGTATGGATGAGTTAGGCT+TGG | + | chr3.2:52260696-52260715 | MS.gene04124:intron | 40.0% | |
| CAATGTGACTAATCAGGCTA+AGG | - | chr3.2:52260998-52261017 | None:intergenic | 40.0% | |
| CGACCACATAAGAAAGTAAG+AGG | + | chr3.2:52260672-52260691 | MS.gene04124:CDS | 40.0% | |
| CTACTCACCTAGCAGAAAAT+CGG | + | chr3.2:52261825-52261844 | MS.gene04124:CDS | 40.0% | |
| CTTACTTTCTTATGTGGTCG+AGG | - | chr3.2:52260672-52260691 | None:intergenic | 40.0% | |
| GAAACTGCTTCCTTATTGTG+AGG | + | chr3.2:52262034-52262053 | MS.gene04124:CDS | 40.0% | |
| GAGGTATGTATGGATGAGTT+AGG | + | chr3.2:52260691-52260710 | MS.gene04124:intron | 40.0% | |
| GCTGTTCAATGTGACTAATC+AGG | - | chr3.2:52261004-52261023 | None:intergenic | 40.0% | |
| TACATCATGGAATTGGCCAA+AGG | + | chr3.2:52261733-52261752 | MS.gene04124:CDS | 40.0% | |
| TACCCAGTGTGGTAAAGATA+AGG | - | chr3.2:52261132-52261151 | None:intergenic | 40.0% | |
| TACTCACCTAGCAGAAAATC+GGG | + | chr3.2:52261826-52261845 | MS.gene04124:CDS | 40.0% | |
| TGCAGATTGGGAAAAGATCA+TGG | + | chr3.2:52262006-52262025 | MS.gene04124:CDS | 40.0% | |
| TGTGGTCGAGGAGAAAATAA+TGG | - | chr3.2:52260660-52260679 | None:intergenic | 40.0% | |
| ! | GATTTTCTGCTAGGTGAGTA+GGG | - | chr3.2:52261826-52261845 | None:intergenic | 40.0% |
| ! | TCATGATGCTTGACGTTTTC+AGG | - | chr3.2:52261637-52261656 | None:intergenic | 40.0% |
| ! | TCCTTGTTTGCAAGAGAAAG+TGG | + | chr3.2:52262089-52262108 | MS.gene04124:CDS | 40.0% |
| AGAGAAAGTGGTCTGCAAGT+AGG | + | chr3.2:52262101-52262120 | MS.gene04124:CDS | 45.0% | |
| GGTCGAGGAGAAAATAATGG+CGG | - | chr3.2:52260657-52260676 | None:intergenic | 45.0% | |
| TCAGGACTCTTGATCAACAC+TGG | - | chr3.2:52260345-52260364 | None:intergenic | 45.0% | |
| TCTTGCAAACAAGGACCAAC+CGG | - | chr3.2:52262084-52262103 | None:intergenic | 45.0% | |
| TTGGAAAGCAAGGAACGTGT+TGG | - | chr3.2:52261066-52261085 | None:intergenic | 45.0% | |
| ! | ATGGATGAGTTAGGCTTGGT+TGG | + | chr3.2:52260700-52260719 | MS.gene04124:intron | 45.0% |
| ! | CGATTTTCTGCTAGGTGAGT+AGG | - | chr3.2:52261827-52261846 | None:intergenic | 45.0% |
| ! | GTGTTGATCAAGAGTCCTGA+TGG | + | chr3.2:52260345-52260364 | MS.gene04124:CDS | 45.0% |
| ! | GTTGGCTTACTGACCAACTT+GGG | + | chr3.2:52260254-52260273 | MS.gene04124:intron | 45.0% |
| ! | TTACCACCCGATTTTCTGCT+AGG | - | chr3.2:52261835-52261854 | None:intergenic | 45.0% |
| !! | CAAGTTGGTCAGTAAGCCAA+CGG | - | chr3.2:52260255-52260274 | None:intergenic | 45.0% |
| !! | TTAGTTAGCCTTGTGGGAGT+TGG | + | chr3.2:52260956-52260975 | MS.gene04124:intron | 45.0% |
| CTCTCTTGGACATGGCTGTT+TGG | + | chr3.2:52260449-52260468 | MS.gene04124:CDS | 50.0% | |
| GGTTAGAACCAACTCCCACA+AGG | - | chr3.2:52260967-52260986 | None:intergenic | 50.0% | |
| TAGAAATGTTCGCCGCCTCT+CGG | + | chr3.2:52262058-52262077 | MS.gene04124:CDS | 50.0% | |
| TCACCTAGCAGAAAATCGGG+TGG | + | chr3.2:52261829-52261848 | MS.gene04124:CDS | 50.0% | |
| TCTTGGACATGGCTGTTTGG+TGG | + | chr3.2:52260452-52260471 | MS.gene04124:CDS | 50.0% | |
| !! | CGTTGGCTTACTGACCAACT+TGG | + | chr3.2:52260253-52260272 | MS.gene04124:intron | 50.0% |
| ! | TCCTGAGCTCTAGCTCCCTT+TGG | - | chr3.2:52261752-52261771 | None:intergenic | 55.0% |
| GCCAAAGGGAGCTAGAGCTC+AGG | + | chr3.2:52261748-52261767 | MS.gene04124:CDS | 60.0% | |
| AATGTTCGCCGCCTCTCGGC+CGG | + | chr3.2:52262062-52262081 | MS.gene04124:CDS | 65.0% | |
| ACAAGGACCAACCGGCCGAG+AGG | - | chr3.2:52262076-52262095 | None:intergenic | 65.0% | |
| AGGACCAACCGGCCGAGAGG+CGG | - | chr3.2:52262073-52262092 | None:intergenic | 70.0% | |
| TTCGCCGCCTCTCGGCCGGT+TGG | + | chr3.2:52262066-52262085 | MS.gene04124:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 52260007 | 52262199 | 52260007 | ID=MS.gene04124 |
| chr3.2 | mRNA | 52260007 | 52262199 | 52260007 | ID=MS.gene04124.t1;Parent=MS.gene04124 |
| chr3.2 | exon | 52260007 | 52260078 | 52260007 | ID=MS.gene04124.t1.exon1;Parent=MS.gene04124.t1 |
| chr3.2 | CDS | 52260007 | 52260078 | 52260007 | ID=cds.MS.gene04124.t1;Parent=MS.gene04124.t1 |
| chr3.2 | exon | 52260294 | 52260693 | 52260294 | ID=MS.gene04124.t1.exon2;Parent=MS.gene04124.t1 |
| chr3.2 | CDS | 52260294 | 52260693 | 52260294 | ID=cds.MS.gene04124.t1;Parent=MS.gene04124.t1 |
| chr3.2 | exon | 52261705 | 52261850 | 52261705 | ID=MS.gene04124.t1.exon3;Parent=MS.gene04124.t1 |
| chr3.2 | CDS | 52261705 | 52261850 | 52261705 | ID=cds.MS.gene04124.t1;Parent=MS.gene04124.t1 |
| chr3.2 | exon | 52261954 | 52262199 | 52261954 | ID=MS.gene04124.t1.exon4;Parent=MS.gene04124.t1 |
| chr3.2 | CDS | 52261954 | 52262199 | 52261954 | ID=cds.MS.gene04124.t1;Parent=MS.gene04124.t1 |
| Gene Sequence |
| Protein sequence |
