Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene041302.t1 | XP_003622266.1 | 84.3 | 197 | 24 | 2 | 45 | 235 | 157 | 352 | 1.70E-84 | 322.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene041302.t1 | Q9LU68 | 42.4 | 118 | 33 | 3 | 111 | 228 | 337 | 419 | 5.5e-12 | 73.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene041302.t1 | G7L5C3 | 84.3 | 197 | 24 | 2 | 45 | 235 | 157 | 352 | 1.2e-84 | 322.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene041302.t1 | TR | Others |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene041302.t1 | MTR_7g032240 | 86.307 | 241 | 22 | 3 | 1 | 235 | 117 | 352 | 2.44e-139 | 397 |
| MS.gene041302.t1 | MTR_5g072780 | 36.885 | 122 | 42 | 3 | 108 | 228 | 123 | 210 | 2.35e-16 | 76.6 |
| MS.gene041302.t1 | MTR_4g127420 | 38.261 | 115 | 42 | 3 | 114 | 228 | 293 | 378 | 3.67e-15 | 75.5 |
| MS.gene041302.t1 | MTR_8g104190 | 34.091 | 176 | 61 | 8 | 76 | 243 | 276 | 404 | 4.96e-15 | 75.1 |
| MS.gene041302.t1 | MTR_1g110870 | 38.281 | 128 | 56 | 4 | 109 | 233 | 316 | 423 | 7.58e-15 | 74.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene041302.t1 | AT5G14370 | 50.000 | 186 | 64 | 9 | 56 | 236 | 177 | 338 | 1.04e-37 | 136 |
| MS.gene041302.t1 | AT5G57180 | 41.525 | 118 | 34 | 3 | 111 | 228 | 337 | 419 | 1.37e-18 | 85.5 |
| MS.gene041302.t1 | AT5G57180 | 41.525 | 118 | 34 | 3 | 111 | 228 | 337 | 419 | 1.75e-18 | 85.5 |
| MS.gene041302.t1 | AT4G25990 | 37.692 | 130 | 46 | 3 | 111 | 239 | 293 | 388 | 6.52e-17 | 80.5 |
| MS.gene041302.t1 | AT1G73870 | 40.310 | 129 | 46 | 5 | 108 | 228 | 276 | 381 | 7.74e-17 | 80.5 |
| MS.gene041302.t1 | AT4G25990 | 40.336 | 119 | 36 | 3 | 111 | 228 | 293 | 377 | 1.27e-16 | 79.7 |
| MS.gene041302.t1 | AT4G25990 | 37.500 | 136 | 43 | 4 | 111 | 238 | 293 | 394 | 2.11e-16 | 79.3 |
| MS.gene041302.t1 | AT1G25440 | 38.583 | 127 | 59 | 4 | 109 | 233 | 293 | 402 | 5.16e-15 | 75.1 |
| MS.gene041302.t1 | AT1G07050 | 38.843 | 121 | 36 | 4 | 109 | 228 | 104 | 187 | 5.64e-14 | 69.7 |
| MS.gene041302.t1 | AT1G07050 | 38.843 | 121 | 36 | 4 | 109 | 228 | 104 | 187 | 5.89e-14 | 69.7 |
| MS.gene041302.t1 | AT1G68520 | 34.351 | 131 | 61 | 4 | 108 | 233 | 288 | 398 | 1.63e-12 | 67.8 |
Find 77 sgRNAs with CRISPR-Local
Find 195 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTGAGTGTTCTTGCCTTCT+TGG | 0.125557 | 7.2:-67242324 | None:intergenic |
| TGGTATTTGTACAGGTAATA+TGG | 0.161633 | 7.2:+67241577 | MS.gene041302:intron |
| CTTCTTGGTGTTTGCTTGTT+TGG | 0.198875 | 7.2:-67242309 | None:intergenic |
| CTCTGCCACCCTTCTTTGTT+AGG | 0.206880 | 7.2:-67242435 | None:intergenic |
| GTAGAGTTTCTCGGAGTTAC+AGG | 0.248195 | 7.2:-67242383 | None:intergenic |
| GGTTATGGGTGTGATGTTAA+TGG | 0.287554 | 7.2:+67241603 | MS.gene041302:CDS |
| TTGTTAGCTCCAACAACTTC+AGG | 0.323703 | 7.2:-67241642 | None:intergenic |
| TTGAATGCTTGGTCTGATAA+AGG | 0.338505 | 7.2:+67240108 | MS.gene041302:CDS |
| CAGGTAATATGGGATGGTTA+TGG | 0.362688 | 7.2:+67241588 | MS.gene041302:intron |
| AGGTAATATGGGATGGTTAT+GGG | 0.363177 | 7.2:+67241589 | MS.gene041302:intron |
| CAGACAAGGACTGACTAATC+TGG | 0.364953 | 7.2:+67242621 | MS.gene041302:intron |
| AAAGGTTCTCTTTATGTTGA+TGG | 0.373469 | 7.2:+67240126 | MS.gene041302:CDS |
| ACCTATGGTTGACTGGTTGC+TGG | 0.376351 | 7.2:-67242459 | None:intergenic |
| CAGACTGTTCCTGATTTGTT+CGG | 0.385801 | 7.2:+67240165 | MS.gene041302:CDS |
| GGTATTTGTACAGGTAATAT+GGG | 0.387282 | 7.2:+67241578 | MS.gene041302:intron |
| TTTCAGATAGTAGAGTTTCT+CGG | 0.397905 | 7.2:-67242392 | None:intergenic |
| CACCCTTCTTTGTTAGGGTG+TGG | 0.406793 | 7.2:-67242429 | None:intergenic |
| TGTGAAGGTGAAGGAAGAAA+TGG | 0.408295 | 7.2:+67241671 | MS.gene041302:CDS |
| TCTGCCACCCTTCTTTGTTA+GGG | 0.413375 | 7.2:-67242434 | None:intergenic |
| GAAGAAATGGGTTGGAAGCT+TGG | 0.419659 | 7.2:+67241684 | MS.gene041302:CDS |
| AAGAAATGGGTTGGAAGCTT+GGG | 0.434227 | 7.2:+67241685 | MS.gene041302:CDS |
| ATTGAACCACCGAACAAATC+AGG | 0.449972 | 7.2:-67240174 | None:intergenic |
| GGAAAGCAATGAGGAGGAAG+AGG | 0.454954 | 7.2:+67239926 | MS.gene041302:CDS |
| GTTATGGGTGTGATGTTAAT+GGG | 0.457104 | 7.2:+67241604 | MS.gene041302:CDS |
| GACGGTGGAGCAACGCTAAA+CGG | 0.458187 | 7.2:+67239793 | MS.gene041302:CDS |
| GAAGTTAATAGTACTTGTGT+TGG | 0.464035 | 7.2:+67240027 | MS.gene041302:CDS |
| AGGTGTCCGGTGATGGATCA+AGG | 0.465230 | 7.2:+67239895 | MS.gene041302:CDS |
| TGGAAAGTTCCTGAAGTTGT+TGG | 0.467176 | 7.2:+67241633 | MS.gene041302:CDS |
| GTTACAGGTCTGAGGATTTG+TGG | 0.495251 | 7.2:-67242368 | None:intergenic |
| ATTAGTAAAATTACATTGGG+AGG | 0.505856 | 7.2:-67240198 | None:intergenic |
| AGTGATGAGGTGTCCGGTGA+TGG | 0.506901 | 7.2:+67239888 | MS.gene041302:CDS |
| CCGATCTACCTATGGTTGAC+TGG | 0.507193 | 7.2:-67242466 | None:intergenic |
| TGAAGAGAGTGAACAGAGAT+GGG | 0.510202 | 7.2:+67239957 | MS.gene041302:CDS |
| TTAGTAAAATTACATTGGGA+GGG | 0.521925 | 7.2:-67240197 | None:intergenic |
| CAAACAAGCAAACACCAAGA+AGG | 0.527605 | 7.2:+67242310 | MS.gene041302:CDS |
| GACGACGACGGAGGAAGAAG+AGG | 0.527666 | 7.2:+67239855 | MS.gene041302:CDS |
| AGAAACGAAGAAGGAAATGA+TGG | 0.528265 | 7.2:+67240002 | MS.gene041302:CDS |
| ATGCCACACCCTAACAAAGA+AGG | 0.529015 | 7.2:+67242426 | MS.gene041302:CDS |
| ATGATGGGATATTGAATGCT+TGG | 0.532795 | 7.2:+67240097 | MS.gene041302:CDS |
| AGTTGTTGAAGAAACGAAGA+AGG | 0.537457 | 7.2:+67239993 | MS.gene041302:CDS |
| TGTTGAGATACAAAGAGAAG+AGG | 0.545019 | 7.2:+67241724 | MS.gene041302:CDS |
| TCAACTTGCGAACTTCATAA+CGG | 0.545911 | 7.2:-67241773 | None:intergenic |
| TTATGTTGATGGTTGTGATG+AGG | 0.548680 | 7.2:+67240137 | MS.gene041302:CDS |
| TCCGGTGATGGATCAAGGGT+TGG | 0.551320 | 7.2:+67239900 | MS.gene041302:CDS |
| ACTGTTCCTGATTTGTTCGG+TGG | 0.551576 | 7.2:+67240168 | MS.gene041302:CDS |
| AGACAAGGACTGACTAATCT+GGG | 0.558164 | 7.2:+67242622 | MS.gene041302:intron |
| GTTTGAAGCTTGATCATGAT+GGG | 0.563359 | 7.2:+67240082 | MS.gene041302:CDS |
| GCCAGCAACCAGTCAACCAT+AGG | 0.564571 | 7.2:+67242458 | MS.gene041302:CDS |
| TTCTCGGAGTTACAGGTCTG+AGG | 0.564734 | 7.2:-67242376 | None:intergenic |
| AGTTTGAAGCTTGATCATGA+TGG | 0.572212 | 7.2:+67240081 | MS.gene041302:CDS |
| TTTGTACAGGTAATATGGGA+TGG | 0.575240 | 7.2:+67241582 | MS.gene041302:intron |
| GTGAAGGTGAAGGAAGAAAT+GGG | 0.575413 | 7.2:+67241672 | MS.gene041302:CDS |
| CTAACAAAGAAGGGTGGCAG+AGG | 0.579542 | 7.2:+67242436 | MS.gene041302:CDS |
| ATGAAGAGAGTGAACAGAGA+TGG | 0.580517 | 7.2:+67239956 | MS.gene041302:CDS |
| ACCAACCCTTGATCCATCAC+CGG | 0.584061 | 7.2:-67239901 | None:intergenic |
| AACGAAGAAGGAAATGATGG+AGG | 0.585427 | 7.2:+67240005 | MS.gene041302:CDS |
| TGGTGAGGAAAGCAATGAGG+AGG | 0.586113 | 7.2:+67239920 | MS.gene041302:CDS |
| AGGTGAAGGAAGAAATGGGT+TGG | 0.586587 | 7.2:+67241676 | MS.gene041302:CDS |
| CAATAACAATGTGAAGGTGA+AGG | 0.593718 | 7.2:+67241662 | MS.gene041302:CDS |
| AGAAATAGTACCTTCATCCT+CGG | 0.597938 | 7.2:-67241810 | None:intergenic |
| GTTTAGCGTTGCTCCACCGT+CGG | 0.602611 | 7.2:-67239791 | None:intergenic |
| ATTGTCAGTGATGAGGTGTC+CGG | 0.606087 | 7.2:+67239882 | MS.gene041302:CDS |
| TGCCACACCCTAACAAAGAA+GGG | 0.609411 | 7.2:+67242427 | MS.gene041302:CDS |
| TGATGGATCAAGGGTTGGTG+AGG | 0.611319 | 7.2:+67239905 | MS.gene041302:CDS |
| TTGGAAGCTTGGGCAGAGAG+AGG | 0.619401 | 7.2:+67241695 | MS.gene041302:CDS |
| AACAAATCAGGAACAGTCTG+AGG | 0.628449 | 7.2:-67240162 | None:intergenic |
| AGCTAACAATAACAATGTGA+AGG | 0.629964 | 7.2:+67241656 | MS.gene041302:CDS |
| AACGGTGATGACGACGACGG+AGG | 0.631073 | 7.2:+67239846 | MS.gene041302:CDS |
| AGGAGTCATTGTCAGTGATG+AGG | 0.647629 | 7.2:+67239875 | MS.gene041302:CDS |
| GTGATGTTAATGGGAACACA+TGG | 0.674682 | 7.2:+67241613 | MS.gene041302:CDS |
| GGTTGGTGAGGAAAGCAATG+AGG | 0.677201 | 7.2:+67239917 | MS.gene041302:CDS |
| GCGTTACTCTTCACATCCGA+CGG | 0.677661 | 7.2:+67239775 | MS.gene041302:CDS |
| GGTGTCCGGTGATGGATCAA+GGG | 0.677873 | 7.2:+67239896 | MS.gene041302:CDS |
| TTACTCTTCACATCCGACGG+TGG | 0.716926 | 7.2:+67239778 | MS.gene041302:CDS |
| TGAATCGACTACGTTAACAA+CGG | 0.720555 | 7.2:+67239828 | MS.gene041302:CDS |
| CACACCCTAACAAAGAAGGG+TGG | 0.723841 | 7.2:+67242430 | MS.gene041302:CDS |
| AACAACGGTGATGACGACGA+CGG | 0.737423 | 7.2:+67239843 | MS.gene041302:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAATTAGTAAAATTACAT+TGG | - | chr7.2:67240205-67240224 | None:intergenic | 10.0% |
| !! | AAAATTAGTAAAATTACATT+GGG | - | chr7.2:67240204-67240223 | None:intergenic | 10.0% |
| !! | ATCAATTTAGAAATATATTA+TGG | + | chr7.2:67241511-67241530 | MS.gene041302:intron | 10.0% |
| !!! | AAGAATTTATTTTGATTTAA+AGG | + | chr7.2:67240939-67240958 | MS.gene041302:intron | 10.0% |
| !! | AAAAAATTACTTGAAAAGAA+AGG | + | chr7.2:67241916-67241935 | MS.gene041302:intron | 15.0% |
| !! | ATGAGAGATAATAAATTTAA+TGG | - | chr7.2:67240890-67240909 | None:intergenic | 15.0% |
| !!! | TTAAGTTGATTTTATAAGAT+TGG | + | chr7.2:67241396-67241415 | MS.gene041302:intron | 15.0% |
| !!! | TTTTTGTTTATAAATGTGAA+CGG | + | chr7.2:67241228-67241247 | MS.gene041302:intron | 15.0% |
| !! | AAAATCAACTTAAACCATTA+TGG | - | chr7.2:67241389-67241408 | None:intergenic | 20.0% |
| !! | ACTTGATGCAAATTATAATT+TGG | - | chr7.2:67240468-67240487 | None:intergenic | 20.0% |
| !!! | ATATCTAGTACAATTTTGTT+TGG | + | chr7.2:67242586-67242605 | MS.gene041302:intron | 20.0% |
| !!! | ATCTTACATTTAAAACATGA+TGG | + | chr7.2:67241018-67241037 | MS.gene041302:intron | 20.0% |
| !!! | ATTGTTAGAGAAAATCTTTT+AGG | + | chr7.2:67241479-67241498 | MS.gene041302:intron | 20.0% |
| !!! | ATTTTTTCCAATTAATTGAG+TGG | + | chr7.2:67240413-67240432 | MS.gene041302:intron | 20.0% |
| !!! | GATTTTATAAGATTGGTTTA+TGG | + | chr7.2:67241403-67241422 | MS.gene041302:intron | 20.0% |
| !!! | TCAATGATTTGTTTTTAATC+TGG | - | chr7.2:67240578-67240597 | None:intergenic | 20.0% |
| !!! | TTTCATTATTGGTTACTTTT+TGG | + | chr7.2:67240786-67240805 | MS.gene041302:intron | 20.0% |
| !!! | TTTTTTTTTGTACATGTGAT+CGG | - | chr7.2:67241116-67241135 | None:intergenic | 20.0% |
| ! | AAATATATCACAACCAAACA+GGG | - | chr7.2:67241090-67241109 | None:intergenic | 25.0% |
| ! | AAATGTAAGATCCTAATCAA+GGG | - | chr7.2:67241009-67241028 | None:intergenic | 25.0% |
| ! | AACCAATAATGAAAAGTTGT+CGG | - | chr7.2:67240780-67240799 | None:intergenic | 25.0% |
| ! | ATTAGTAAAATTACATTGGG+AGG | - | chr7.2:67240201-67240220 | None:intergenic | 25.0% |
| ! | TAAATGTAAGATCCTAATCA+AGG | - | chr7.2:67241010-67241029 | None:intergenic | 25.0% |
| ! | TTAGTAAAATTACATTGGGA+GGG | - | chr7.2:67240200-67240219 | None:intergenic | 25.0% |
| ! | TTCAATTTATTGCATCAACT+TGG | - | chr7.2:67241460-67241479 | None:intergenic | 25.0% |
| ! | TTCTCGTTTATATTGTACAA+GGG | - | chr7.2:67242075-67242094 | None:intergenic | 25.0% |
| ! | TTTCTCGTTTATATTGTACA+AGG | - | chr7.2:67242076-67242095 | None:intergenic | 25.0% |
| !! | ATTTCTTTTGTGCATGTTTT+TGG | + | chr7.2:67240724-67240743 | MS.gene041302:intron | 25.0% |
| !! | CAACTTTTGAACAATTTTCT+TGG | + | chr7.2:67242121-67242140 | MS.gene041302:intron | 25.0% |
| !! | GAATAGTGATGATTTCATTT+TGG | + | chr7.2:67240752-67240771 | MS.gene041302:intron | 25.0% |
| !! | TGCTTATATTTGAAACTCAA+GGG | - | chr7.2:67242000-67242019 | None:intergenic | 25.0% |
| !! | TTCATTTGATAGTAACAAGT+GGG | - | chr7.2:67241538-67241557 | None:intergenic | 25.0% |
| !! | TTGCTTATATTTGAAACTCA+AGG | - | chr7.2:67242001-67242020 | None:intergenic | 25.0% |
| !! | TTTCATACATATTTGATTCG+CGG | + | chr7.2:67240245-67240264 | MS.gene041302:intron | 25.0% |
| !! | TTTTTAATCAGTTATGAGTG+TGG | + | chr7.2:67240627-67240646 | MS.gene041302:intron | 25.0% |
| !!! | TACAATTTTGTTTGGAAACT+CGG | + | chr7.2:67242594-67242613 | MS.gene041302:intron | 25.0% |
| !!! | TGTGTGTTATTTTGTTTGAA+TGG | + | chr7.2:67241962-67241981 | MS.gene041302:intron | 25.0% |
| AAAACAGGAGAAAAATACAC+TGG | - | chr7.2:67240847-67240866 | None:intergenic | 30.0% | |
| AAAGGTTCTCTTTATGTTGA+TGG | + | chr7.2:67240126-67240145 | MS.gene041302:CDS | 30.0% | |
| AAGCTATTTGGTATTTGTAC+AGG | + | chr7.2:67241569-67241588 | MS.gene041302:intron | 30.0% | |
| AATACACCCAAATAAAACGA+AGG | + | chr7.2:67242281-67242300 | MS.gene041302:intron | 30.0% | |
| AATGTAAGATCCTAATCAAG+GGG | - | chr7.2:67241008-67241027 | None:intergenic | 30.0% | |
| ACTTTCTTCTCTCTTCTTAT+TGG | - | chr7.2:67242210-67242229 | None:intergenic | 30.0% | |
| AGCTAACAATAACAATGTGA+AGG | + | chr7.2:67241656-67241675 | MS.gene041302:CDS | 30.0% | |
| GAAATATATCACAACCAAAC+AGG | - | chr7.2:67241091-67241110 | None:intergenic | 30.0% | |
| GAAGTTAATAGTACTTGTGT+TGG | + | chr7.2:67240027-67240046 | MS.gene041302:CDS | 30.0% | |
| GGTATTTGTACAGGTAATAT+GGG | + | chr7.2:67241578-67241597 | MS.gene041302:intron | 30.0% | |
| TGGTATTTGTACAGGTAATA+TGG | + | chr7.2:67241577-67241596 | MS.gene041302:intron | 30.0% | |
| TGGTGTGACAAAGATTATTA+TGG | + | chr7.2:67241423-67241442 | MS.gene041302:intron | 30.0% | |
| TTTCAGATAGTAGAGTTTCT+CGG | - | chr7.2:67242395-67242414 | None:intergenic | 30.0% | |
| ! | CTTCATTTGATAGTAACAAG+TGG | - | chr7.2:67241539-67241558 | None:intergenic | 30.0% |
| ! | GTTAGAGAAAATCTTTTAGG+TGG | + | chr7.2:67241482-67241501 | MS.gene041302:intron | 30.0% |
| !! | TTCTTTTACCCTTGTTTCAA+TGG | + | chr7.2:67241064-67241083 | MS.gene041302:intron | 30.0% |
| !!! | AGTGTTTTGATGAAGCTATT+TGG | + | chr7.2:67241557-67241576 | MS.gene041302:intron | 30.0% |
| !!! | ATTGGTTACTTTTTGGTAAG+AGG | + | chr7.2:67240793-67240812 | MS.gene041302:intron | 30.0% |
| ACCAGATATGTCTAAATGCA+TGG | - | chr7.2:67241846-67241865 | None:intergenic | 35.0% | |
| ACCATGCATTTAGACATATC+TGG | + | chr7.2:67241842-67241861 | MS.gene041302:intron | 35.0% | |
| ACTAGATATAACCTCTATCC+TGG | - | chr7.2:67242575-67242594 | None:intergenic | 35.0% | |
| AGAAACGAAGAAGGAAATGA+TGG | + | chr7.2:67240002-67240021 | MS.gene041302:CDS | 35.0% | |
| AGAAATAGTACCTTCATCCT+CGG | - | chr7.2:67241813-67241832 | None:intergenic | 35.0% | |
| AGGTAATATGGGATGGTTAT+GGG | + | chr7.2:67241589-67241608 | MS.gene041302:intron | 35.0% | |
| AGTTGTTGAAGAAACGAAGA+AGG | + | chr7.2:67239993-67240012 | MS.gene041302:CDS | 35.0% | |
| CAATAACAATGTGAAGGTGA+AGG | + | chr7.2:67241662-67241681 | MS.gene041302:CDS | 35.0% | |
| GACAAAGATTATTATGGACG+AGG | + | chr7.2:67241429-67241448 | MS.gene041302:intron | 35.0% | |
| GCTTGAAGTTGGCAAAATTA+TGG | - | chr7.2:67240377-67240396 | None:intergenic | 35.0% | |
| GTTATGGGTGTGATGTTAAT+GGG | + | chr7.2:67241604-67241623 | MS.gene041302:CDS | 35.0% | |
| TCAACTTGCGAACTTCATAA+CGG | - | chr7.2:67241776-67241795 | None:intergenic | 35.0% | |
| TGAATCGACTACGTTAACAA+CGG | + | chr7.2:67239828-67239847 | MS.gene041302:CDS | 35.0% | |
| TGTCTCAAAAGTTGTCACAA+TGG | + | chr7.2:67242230-67242249 | MS.gene041302:intron | 35.0% | |
| TGTTGAGATACAAAGAGAAG+AGG | + | chr7.2:67241724-67241743 | MS.gene041302:CDS | 35.0% | |
| TTGAATGCTTGGTCTGATAA+AGG | + | chr7.2:67240108-67240127 | MS.gene041302:CDS | 35.0% | |
| TTTAAAGGCTGAGATTTCAC+TGG | + | chr7.2:67240954-67240973 | MS.gene041302:intron | 35.0% | |
| TTTGTACAGGTAATATGGGA+TGG | + | chr7.2:67241582-67241601 | MS.gene041302:intron | 35.0% | |
| TTTGTGTGTGACATCCATAA+TGG | + | chr7.2:67241372-67241391 | MS.gene041302:intron | 35.0% | |
| ! | AGTGATTTTGCCAACTTCAA+AGG | - | chr7.2:67240348-67240367 | None:intergenic | 35.0% |
| ! | AGTTTGAAGCTTGATCATGA+TGG | + | chr7.2:67240081-67240100 | MS.gene041302:CDS | 35.0% |
| ! | ATGATGGGATATTGAATGCT+TGG | + | chr7.2:67240097-67240116 | MS.gene041302:CDS | 35.0% |
| ! | CACCGACAACTTTTCATTAT+TGG | + | chr7.2:67240775-67240794 | MS.gene041302:intron | 35.0% |
| ! | GCAAGTTGAATGCTGAAAAA+CGG | + | chr7.2:67241787-67241806 | MS.gene041302:CDS | 35.0% |
| ! | GTTTGAAGCTTGATCATGAT+GGG | + | chr7.2:67240082-67240101 | MS.gene041302:CDS | 35.0% |
| ! | TTGTGCATGTGACTGATTTA+TGG | + | chr7.2:67240689-67240708 | MS.gene041302:intron | 35.0% |
| !! | TTATGTTGATGGTTGTGATG+AGG | + | chr7.2:67240137-67240156 | MS.gene041302:CDS | 35.0% |
| !!! | CTTTTGTGCATGTTTTTGGA+TGG | + | chr7.2:67240728-67240747 | MS.gene041302:intron | 35.0% |
| !!! | TTGAAACGACGTCGTTTTTT+GGG | + | chr7.2:67240052-67240071 | MS.gene041302:CDS | 35.0% |
| !!! | TTTGAAACGACGTCGTTTTT+TGG | + | chr7.2:67240051-67240070 | MS.gene041302:CDS | 35.0% |
| AAACAGGGCCATTGAAACAA+GGG | - | chr7.2:67241075-67241094 | None:intergenic | 40.0% | |
| AACAAATCAGGAACAGTCTG+AGG | - | chr7.2:67240165-67240184 | None:intergenic | 40.0% | |
| AACGAAGAAGGAAATGATGG+AGG | + | chr7.2:67240005-67240024 | MS.gene041302:CDS | 40.0% | |
| AAGATCCTAATCAAGGGGAA+TGG | - | chr7.2:67241003-67241022 | None:intergenic | 40.0% | |
| ACAGGAGAAAAATACACTGG+AGG | - | chr7.2:67240844-67240863 | None:intergenic | 40.0% | |
| AGACAAGGACTGACTAATCT+GGG | + | chr7.2:67242622-67242641 | MS.gene041302:intron | 40.0% | |
| ATAATAGTCGTGACCCTTGT+CGG | + | chr7.2:67241258-67241277 | MS.gene041302:intron | 40.0% | |
| ATGAAGAGAGTGAACAGAGA+TGG | + | chr7.2:67239956-67239975 | MS.gene041302:CDS | 40.0% | |
| ATTGAACCACCGAACAAATC+AGG | - | chr7.2:67240177-67240196 | None:intergenic | 40.0% | |
| ATTGAGTGTTCTTGCCTTCT+TGG | - | chr7.2:67242327-67242346 | None:intergenic | 40.0% | |
| CAAACAAGCAAACACCAAGA+AGG | + | chr7.2:67242310-67242329 | MS.gene041302:CDS | 40.0% | |
| CAGGTAATATGGGATGGTTA+TGG | + | chr7.2:67241588-67241607 | MS.gene041302:intron | 40.0% | |
| CAGTGTTATCATGATCCGAT+TGG | + | chr7.2:67240285-67240304 | MS.gene041302:intron | 40.0% | |
| GGTTATGGGTGTGATGTTAA+TGG | + | chr7.2:67241603-67241622 | MS.gene041302:CDS | 40.0% | |
| GTGAAGGTGAAGGAAGAAAT+GGG | + | chr7.2:67241672-67241691 | MS.gene041302:CDS | 40.0% | |
| GTGATGTTAATGGGAACACA+TGG | + | chr7.2:67241613-67241632 | MS.gene041302:CDS | 40.0% | |
| GTGTGAGCCACTCAATTAAT+TGG | - | chr7.2:67240423-67240442 | None:intergenic | 40.0% | |
| TGAAGAGAGTGAACAGAGAT+GGG | + | chr7.2:67239957-67239976 | MS.gene041302:CDS | 40.0% | |
| TGGAAAGTTCCTGAAGTTGT+TGG | + | chr7.2:67241633-67241652 | MS.gene041302:CDS | 40.0% | |
| TGTGAAGGTGAAGGAAGAAA+TGG | + | chr7.2:67241671-67241690 | MS.gene041302:CDS | 40.0% | |
| TTGCCAACTTCAAAGCCAAT+CGG | - | chr7.2:67240303-67240322 | None:intergenic | 40.0% | |
| TTGTTAGCTCCAACAACTTC+AGG | - | chr7.2:67241645-67241664 | None:intergenic | 40.0% | |
| ! | ATTTTGCCAACTTCAAGCTG+AGG | + | chr7.2:67240379-67240398 | MS.gene041302:intron | 40.0% |
| !! | AAGAAATGGGTTGGAAGCTT+GGG | + | chr7.2:67241685-67241704 | MS.gene041302:CDS | 40.0% |
| !! | CAGACTGTTCCTGATTTGTT+CGG | + | chr7.2:67240165-67240184 | MS.gene041302:CDS | 40.0% |
| !! | CTTCTTGGTGTTTGCTTGTT+TGG | - | chr7.2:67242312-67242331 | None:intergenic | 40.0% |
| !!! | GTCCTGCCTTCGTTTTATTT+GGG | - | chr7.2:67242290-67242309 | None:intergenic | 40.0% |
| AATGCTCAATTCCTCCGACA+AGG | - | chr7.2:67241275-67241294 | None:intergenic | 45.0% | |
| ACGTCTGTACCTACTATGAG+TGG | - | chr7.2:67242550-67242569 | None:intergenic | 45.0% | |
| AGGAGTCATTGTCAGTGATG+AGG | + | chr7.2:67239875-67239894 | MS.gene041302:CDS | 45.0% | |
| AGGATCCATTCCCCTTGATT+AGG | + | chr7.2:67240995-67241014 | MS.gene041302:intron | 45.0% | |
| AGGTGAAGGAAGAAATGGGT+TGG | + | chr7.2:67241676-67241695 | MS.gene041302:CDS | 45.0% | |
| ATGCCACACCCTAACAAAGA+AGG | + | chr7.2:67242426-67242445 | MS.gene041302:CDS | 45.0% | |
| ATGCTCAATTCCTCCGACAA+GGG | - | chr7.2:67241274-67241293 | None:intergenic | 45.0% | |
| ATTCCCACACTGCAGAAAAC+AGG | - | chr7.2:67240862-67240881 | None:intergenic | 45.0% | |
| CAAACAGGGCCATTGAAACA+AGG | - | chr7.2:67241076-67241095 | None:intergenic | 45.0% | |
| CACCCAAATAAAACGAAGGC+AGG | + | chr7.2:67242285-67242304 | MS.gene041302:intron | 45.0% | |
| CAGACAAGGACTGACTAATC+TGG | + | chr7.2:67242621-67242640 | MS.gene041302:intron | 45.0% | |
| CCAGTCAACCATAGGTAGAT+CGG | + | chr7.2:67242466-67242485 | MS.gene041302:intron | 45.0% | |
| CGTCTGTACCTACTATGAGT+GGG | - | chr7.2:67242549-67242568 | None:intergenic | 45.0% | |
| CTTGTTTCAATGGCCCTGTT+TGG | + | chr7.2:67241074-67241093 | MS.gene041302:intron | 45.0% | |
| GGAAACTCGGTATACAGACA+AGG | + | chr7.2:67242607-67242626 | MS.gene041302:intron | 45.0% | |
| GTAAGAGGCCTGCTTGATTA+GGG | + | chr7.2:67240808-67240827 | MS.gene041302:intron | 45.0% | |
| GTAGAGTTTCTCGGAGTTAC+AGG | - | chr7.2:67242386-67242405 | None:intergenic | 45.0% | |
| GTTACAGGTCTGAGGATTTG+TGG | - | chr7.2:67242371-67242390 | None:intergenic | 45.0% | |
| TAAGAGGCCTGCTTGATTAG+GGG | + | chr7.2:67240809-67240828 | MS.gene041302:intron | 45.0% | |
| TACAGACGTAACCAGGATAG+AGG | + | chr7.2:67242561-67242580 | MS.gene041302:intron | 45.0% | |
| TACCTACTATGAGTGGGAAG+TGG | - | chr7.2:67242543-67242562 | None:intergenic | 45.0% | |
| TAGTAGGTACAGACGTAACC+AGG | + | chr7.2:67242554-67242573 | MS.gene041302:intron | 45.0% | |
| TATCTGCTCCAACACAAGAC+CGG | + | chr7.2:67242515-67242534 | MS.gene041302:intron | 45.0% | |
| TCATCTCCTCAGCTTGAAGT+TGG | - | chr7.2:67240388-67240407 | None:intergenic | 45.0% | |
| TCTGCCACCCTTCTTTGTTA+GGG | - | chr7.2:67242437-67242456 | None:intergenic | 45.0% | |
| TGCCACACCCTAACAAAGAA+GGG | + | chr7.2:67242427-67242446 | MS.gene041302:CDS | 45.0% | |
| ! | ATTGTCAGTGATGAGGTGTC+CGG | + | chr7.2:67239882-67239901 | MS.gene041302:CDS | 45.0% |
| ! | TCTCCTGTTTTCTGCAGTGT+GGG | + | chr7.2:67240856-67240875 | MS.gene041302:intron | 45.0% |
| ! | TTCTCCTGTTTTCTGCAGTG+TGG | + | chr7.2:67240855-67240874 | MS.gene041302:intron | 45.0% |
| !! | ACTGTTCCTGATTTGTTCGG+TGG | + | chr7.2:67240168-67240187 | MS.gene041302:CDS | 45.0% |
| !! | GAAGAAATGGGTTGGAAGCT+TGG | + | chr7.2:67241684-67241703 | MS.gene041302:CDS | 45.0% |
| !! | GATCCGATTGGCTTTGAAGT+TGG | + | chr7.2:67240297-67240316 | MS.gene041302:intron | 45.0% |
| !! | GCGATGATTGCCTTTGAAGT+TGG | + | chr7.2:67240335-67240354 | MS.gene041302:intron | 45.0% |
| !! | GGTCCTGCCTTCGTTTTATT+TGG | - | chr7.2:67242291-67242310 | None:intergenic | 45.0% |
| AATGGATCCTCTCCAGTGAC+TGG | - | chr7.2:67240985-67241004 | None:intergenic | 50.0% | |
| ACCAACCCTTGATCCATCAC+CGG | - | chr7.2:67239904-67239923 | None:intergenic | 50.0% | |
| AGCCACTTCCCACTCATAGT+AGG | + | chr7.2:67242538-67242557 | MS.gene041302:intron | 50.0% | |
| CACACCCTAACAAAGAAGGG+TGG | + | chr7.2:67242430-67242449 | MS.gene041302:CDS | 50.0% | |
| CACCCTTCTTTGTTAGGGTG+TGG | - | chr7.2:67242432-67242451 | None:intergenic | 50.0% | |
| CCGATCTACCTATGGTTGAC+TGG | - | chr7.2:67242469-67242488 | None:intergenic | 50.0% | |
| CTAACAAAGAAGGGTGGCAG+AGG | + | chr7.2:67242436-67242455 | MS.gene041302:CDS | 50.0% | |
| CTCTGCCACCCTTCTTTGTT+AGG | - | chr7.2:67242438-67242457 | None:intergenic | 50.0% | |
| GCGTTACTCTTCACATCCGA+CGG | + | chr7.2:67239775-67239794 | MS.gene041302:CDS | 50.0% | |
| GGAAAGCAATGAGGAGGAAG+AGG | + | chr7.2:67239926-67239945 | MS.gene041302:CDS | 50.0% | |
| GGTAAGAGGCCTGCTTGATT+AGG | + | chr7.2:67240807-67240826 | MS.gene041302:intron | 50.0% | |
| GTGTTGGAGCAGATAGCGTT+GGG | - | chr7.2:67242510-67242529 | None:intergenic | 50.0% | |
| GTTGGGTGAAGGGGTAGTTA+CGG | - | chr7.2:67242493-67242512 | None:intergenic | 50.0% | |
| TGAAAAACGGCCGAGGATGA+AGG | + | chr7.2:67241800-67241819 | MS.gene041302:CDS | 50.0% | |
| TGAATGCTGAAAAACGGCCG+AGG | + | chr7.2:67241793-67241812 | MS.gene041302:CDS | 50.0% | |
| TGGTGAGGAAAGCAATGAGG+AGG | + | chr7.2:67239920-67239939 | MS.gene041302:CDS | 50.0% | |
| TGTGTTGGAGCAGATAGCGT+TGG | - | chr7.2:67242511-67242530 | None:intergenic | 50.0% | |
| TTACTCTTCACATCCGACGG+TGG | + | chr7.2:67239778-67239797 | MS.gene041302:CDS | 50.0% | |
| TTCTCGGAGTTACAGGTCTG+AGG | - | chr7.2:67242379-67242398 | None:intergenic | 50.0% | |
| TTGGGTGAAGGGGTAGTTAC+GGG | - | chr7.2:67242492-67242511 | None:intergenic | 50.0% | |
| ! | AACAACGGTGATGACGACGA+CGG | + | chr7.2:67239843-67239862 | MS.gene041302:CDS | 50.0% |
| ! | ACCTATGGTTGACTGGTTGC+TGG | - | chr7.2:67242462-67242481 | None:intergenic | 50.0% |
| ! | AGCAGATAGCGTTGGGTGAA+GGG | - | chr7.2:67242503-67242522 | None:intergenic | 50.0% |
| !! | GGTTGGTGAGGAAAGCAATG+AGG | + | chr7.2:67239917-67239936 | MS.gene041302:CDS | 50.0% |
| !! | TGATGGATCAAGGGTTGGTG+AGG | + | chr7.2:67239905-67239924 | MS.gene041302:CDS | 50.0% |
| AGGCCTGCTTGATTAGGGGA+GGG | + | chr7.2:67240813-67240832 | MS.gene041302:intron | 55.0% | |
| ATAGTCGTGACCCTTGTCGG+AGG | + | chr7.2:67241261-67241280 | MS.gene041302:intron | 55.0% | |
| ATCCCCTCCCCTAATCAAGC+AGG | - | chr7.2:67240819-67240838 | None:intergenic | 55.0% | |
| CTATGAGTGGGAAGTGGCTC+CGG | - | chr7.2:67242537-67242556 | None:intergenic | 55.0% | |
| GACGGTGGAGCAACGCTAAA+CGG | + | chr7.2:67239793-67239812 | MS.gene041302:CDS | 55.0% | |
| GATCCTCTCCAGTGACTGGA+GGG | - | chr7.2:67240981-67241000 | None:intergenic | 55.0% | |
| GCCAGCAACCAGTCAACCAT+AGG | + | chr7.2:67242458-67242477 | MS.gene041302:CDS | 55.0% | |
| GTTACGGGCCGATCTACCTA+TGG | - | chr7.2:67242477-67242496 | None:intergenic | 55.0% | |
| GTTTAGCGTTGCTCCACCGT+CGG | - | chr7.2:67239794-67239813 | None:intergenic | 55.0% | |
| TTGGAAGCTTGGGCAGAGAG+AGG | + | chr7.2:67241695-67241714 | MS.gene041302:CDS | 55.0% | |
| ! | AAGTGGCTCCGGTCTTGTGT+TGG | - | chr7.2:67242526-67242545 | None:intergenic | 55.0% |
| ! | AGTGATGAGGTGTCCGGTGA+TGG | + | chr7.2:67239888-67239907 | MS.gene041302:CDS | 55.0% |
| ! | GAGCAGATAGCGTTGGGTGA+AGG | - | chr7.2:67242504-67242523 | None:intergenic | 55.0% |
| ! | GCAGATAGCGTTGGGTGAAG+GGG | - | chr7.2:67242502-67242521 | None:intergenic | 55.0% |
| !! | AGGTGTCCGGTGATGGATCA+AGG | + | chr7.2:67239895-67239914 | MS.gene041302:CDS | 55.0% |
| !! | GGTGTCCGGTGATGGATCAA+GGG | + | chr7.2:67239896-67239915 | MS.gene041302:CDS | 55.0% |
| !! | TCCGGTGATGGATCAAGGGT+TGG | + | chr7.2:67239900-67239919 | MS.gene041302:CDS | 55.0% |
| GACGACGACGGAGGAAGAAG+AGG | + | chr7.2:67239855-67239874 | MS.gene041302:CDS | 60.0% | |
| GAGGCCTGCTTGATTAGGGG+AGG | + | chr7.2:67240812-67240831 | MS.gene041302:intron | 60.0% | |
| GGATCCTCTCCAGTGACTGG+AGG | - | chr7.2:67240982-67241001 | None:intergenic | 60.0% | |
| GGCCTGCTTGATTAGGGGAG+GGG | + | chr7.2:67240814-67240833 | MS.gene041302:intron | 60.0% | |
| TCACTGGACCCTCCAGTCAC+TGG | + | chr7.2:67240970-67240989 | MS.gene041302:intron | 60.0% | |
| ! | AACGGTGATGACGACGACGG+AGG | + | chr7.2:67239846-67239865 | MS.gene041302:CDS | 60.0% |
| GGACCCTCCAGTCACTGGAG+AGG | + | chr7.2:67240975-67240994 | MS.gene041302:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.2 | gene | 67239754 | 67242648 | 67239754 | ID=MS.gene041302 |
| chr7.2 | mRNA | 67239754 | 67242648 | 67239754 | ID=MS.gene041302.t1;Parent=MS.gene041302 |
| chr7.2 | exon | 67239754 | 67240206 | 67239754 | ID=MS.gene041302.t1.exon1;Parent=MS.gene041302.t1 |
| chr7.2 | CDS | 67239754 | 67240206 | 67239754 | ID=cds.MS.gene041302.t1;Parent=MS.gene041302.t1 |
| chr7.2 | exon | 67241591 | 67241821 | 67241591 | ID=MS.gene041302.t1.exon2;Parent=MS.gene041302.t1 |
| chr7.2 | CDS | 67241591 | 67241821 | 67241591 | ID=cds.MS.gene041302.t1;Parent=MS.gene041302.t1 |
| chr7.2 | exon | 67242307 | 67242479 | 67242307 | ID=MS.gene041302.t1.exon3;Parent=MS.gene041302.t1 |
| chr7.2 | CDS | 67242307 | 67242479 | 67242307 | ID=cds.MS.gene041302.t1;Parent=MS.gene041302.t1 |
| chr7.2 | exon | 67242624 | 67242648 | 67242624 | ID=MS.gene041302.t1.exon4;Parent=MS.gene041302.t1 |
| chr7.2 | CDS | 67242624 | 67242648 | 67242624 | ID=cds.MS.gene041302.t1;Parent=MS.gene041302.t1 |
| Gene Sequence |
| Protein sequence |
