AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene041403

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene041403.t1 MTR_4g116420 96.606 383 13 0 1 383 1 383 0.0 767
MS.gene041403.t1 MTR_3g107880 59.344 305 121 2 79 383 18 319 2.28e-131 379
MS.gene041403.t1 MTR_3g107880 59.344 305 121 2 79 383 76 377 7.68e-131 380
MS.gene041403.t1 MTR_3g107880 59.344 305 121 2 79 383 75 376 9.34e-131 380
MS.gene041403.t1 MTR_5g024340 51.815 303 140 3 80 382 80 376 8.52e-104 311
MS.gene041403.t1 MTR_1g086350 48.308 325 140 6 77 383 55 369 2.24e-98 297
MS.gene041403.t1 MTR_1g086350 48.308 325 140 6 77 383 71 385 2.36e-98 298
MS.gene041403.t1 MTR_2g033000 47.321 336 148 6 62 383 46 366 7.27e-89 273
MS.gene041403.t1 MTR_4g123080 45.480 354 163 8 44 383 42 379 1.66e-88 272
MS.gene041403.t1 MTR_4g123080 48.428 318 143 6 80 383 51 361 2.72e-88 271
MS.gene041403.t1 MTR_1g086350 48.227 282 118 6 120 383 12 283 3.14e-82 253
MS.gene041403.t1 MTR_5g071550 36.330 267 134 7 93 348 131 372 2.73e-45 160
MS.gene041403.t1 MTR_1g050520 31.503 346 181 9 16 348 340 642 2.04e-42 157
MS.gene041403.t1 MTR_1g014640 35.581 267 147 5 87 350 79 323 2.41e-42 151
MS.gene041403.t1 MTR_1g013400 35.581 267 147 5 87 350 79 323 2.41e-42 151
MS.gene041403.t1 MTR_3g105730 36.820 239 134 4 115 350 34 258 3.75e-41 146
MS.gene041403.t1 MTR_3g105730 36.820 239 134 4 115 350 56 280 3.89e-41 147
MS.gene041403.t1 MTR_4g123080 48.765 162 74 3 226 383 110 266 5.25e-41 145
MS.gene041403.t1 MTR_4g007440 31.661 319 158 5 84 352 22 330 5.54e-40 145
MS.gene041403.t1 MTR_3g464650 32.090 268 152 6 93 352 71 316 8.62e-40 144
MS.gene041403.t1 MTR_1g115570 36.134 238 131 5 120 354 122 341 9.41e-40 144
MS.gene041403.t1 MTR_5g071550 37.885 227 107 6 93 310 131 332 6.82e-38 140
MS.gene041403.t1 MTR_6g081850 30.655 336 185 12 39 351 9 319 3.26e-37 137
MS.gene041403.t1 MTR_3g464700 35.242 227 119 5 93 313 95 299 1.06e-35 133
MS.gene041403.t1 MTR_3g074610 33.333 282 152 11 79 351 28 282 3.22e-35 130
MS.gene041403.t1 MTR_3g091060 33.051 236 141 4 121 353 122 343 4.22e-35 132
MS.gene041403.t1 MTR_2g008850 33.333 261 141 9 98 351 1 235 2.53e-34 127
MS.gene041403.t1 MTR_4g094208 33.077 260 143 9 98 351 43 277 3.42e-34 128
MS.gene041403.t1 MTR_2g078760 32.210 267 150 9 92 351 12 254 3.02e-33 125
MS.gene041403.t1 MTR_2g008850 33.333 261 141 9 98 351 47 281 4.00e-33 125
MS.gene041403.t1 MTR_5g063940 32.567 261 143 8 98 351 1 235 5.85e-33 123
MS.gene041403.t1 MTR_1g014190 36.126 191 113 2 184 369 158 344 7.60e-33 126
MS.gene041403.t1 MTR_1g014190 36.126 191 113 2 184 369 196 382 8.59e-33 127
MS.gene041403.t1 MTR_2g078760 32.210 267 150 9 92 351 91 333 1.02e-32 125
MS.gene041403.t1 MTR_8g463130 33.195 241 138 6 117 351 31 254 3.98e-32 122
MS.gene041403.t1 MTR_5g063940 32.567 261 143 8 98 351 48 282 4.39e-32 122
MS.gene041403.t1 MTR_8g463130 33.195 241 138 6 117 351 59 282 5.17e-32 122
MS.gene041403.t1 MTR_3g491830 28.808 302 167 8 82 347 57 346 1.79e-31 123
MS.gene041403.t1 MTR_2g040500 29.006 362 181 11 55 353 190 538 1.18e-29 120
MS.gene041403.t1 MTR_3g104710 29.618 314 159 9 93 353 238 542 1.54e-29 120
MS.gene041403.t1 MTR_1g015110 29.885 261 138 6 124 348 290 541 3.09e-29 119
MS.gene041403.t1 MTR_4g125810 29.167 312 161 11 87 352 208 505 3.89e-29 118
MS.gene041403.t1 MTR_3g105880 34.682 173 108 1 184 351 158 330 5.31e-29 116
MS.gene041403.t1 MTR_5g009370 32.411 253 139 7 83 320 50 285 3.51e-28 113
MS.gene041403.t1 MTR_1g028300 31.579 285 157 7 84 348 111 377 4.74e-28 114
MS.gene041403.t1 MTR_4g094542 30.738 244 139 7 113 350 145 364 6.19e-28 113
MS.gene041403.t1 MTR_3g105880 40.299 134 80 0 184 317 158 291 8.62e-26 106
MS.gene041403.t1 MTR_3g068200 28.788 264 144 7 120 348 119 373 1.98e-25 106
MS.gene041403.t1 MTR_5g071550 40.645 155 71 4 93 242 131 269 6.76e-25 103
MS.gene041403.t1 MTR_3g105730 42.188 128 73 1 115 242 56 182 6.79e-25 101
MS.gene041403.t1 MTR_2g078760 33.333 219 119 8 92 303 91 289 1.39e-24 102
MS.gene041403.t1 MTR_8g102550 28.794 257 143 6 122 353 150 391 2.64e-22 97.8
MS.gene041403.t1 MTR_5g080680 30.093 216 126 4 124 323 132 338 8.56e-22 96.3
MS.gene041403.t1 MTR_4g118340 30.855 269 130 12 122 348 84 338 5.01e-21 94.0
MS.gene041403.t1 MTR_2g020970 28.044 271 137 10 121 348 84 339 1.12e-20 92.8
MS.gene041403.t1 MTR_2g020970 27.473 273 140 9 119 348 82 339 3.23e-20 92.0
MS.gene041403.t1 MTR_7g100240 28.622 283 146 9 123 353 70 348 6.19e-20 90.5
MS.gene041403.t1 MTR_6g087000 27.378 347 159 14 112 383 116 444 8.21e-20 92.0
MS.gene041403.t1 MTR_6g087000 27.378 347 159 15 112 383 116 444 8.70e-20 92.0
MS.gene041403.t1 MTR_1g019760 30.916 262 134 10 123 358 64 304 1.53e-19 90.1
MS.gene041403.t1 MTR_1g019760 30.916 262 134 10 123 358 64 304 1.58e-19 90.1
MS.gene041403.t1 MTR_1g116260 26.531 294 142 11 123 355 79 359 6.09e-19 87.8
MS.gene041403.t1 MTR_8g074930 26.644 289 142 11 123 352 78 355 6.82e-18 84.7
MS.gene041403.t1 MTR_3g101540 28.676 272 145 11 116 360 56 305 6.27e-17 82.4
MS.gene041403.t1 MTR_3g032700 29.661 236 127 10 115 315 60 291 6.66e-17 82.4
MS.gene041403.t1 MTR_3g101540 28.676 272 145 11 116 360 56 305 9.16e-17 81.6
MS.gene041403.t1 MTR_4g120410 26.596 282 152 10 118 354 85 356 1.10e-16 80.9
MS.gene041403.t1 MTR_7g090550 29.119 261 128 13 124 341 70 316 1.16e-16 81.6
MS.gene041403.t1 MTR_3g032660 29.237 236 128 10 115 315 60 291 1.90e-16 80.9
MS.gene041403.t1 MTR_7g090530 26.855 283 139 12 106 341 52 313 2.79e-16 80.5
MS.gene041403.t1 MTR_7g081020 25.796 314 153 13 123 374 75 370 3.91e-16 79.7
MS.gene041403.t1 MTR_1g112840 26.573 286 146 11 123 352 80 357 5.84e-16 79.3
MS.gene041403.t1 MTR_1g067210 27.500 280 143 9 123 348 75 348 6.38e-16 79.0
MS.gene041403.t1 MTR_7g112490 27.347 245 119 8 118 312 103 338 1.03e-15 78.6
MS.gene041403.t1 MTR_7g112490 27.347 245 119 8 118 312 85 320 1.13e-15 78.2
MS.gene041403.t1 MTR_1g083690 26.882 279 151 13 118 352 83 352 1.75e-15 77.4
MS.gene041403.t1 MTR_1g110210 27.473 273 152 11 121 367 65 317 7.05e-15 75.5
MS.gene041403.t1 MTR_2g078760 33.987 153 88 6 92 242 91 232 9.20e-15 73.9
MS.gene041403.t1 MTR_4g013295 30.088 226 104 8 124 304 78 294 1.11e-14 75.1
MS.gene041403.t1 MTR_7g081020 27.155 232 121 9 123 314 75 298 1.27e-14 74.3
MS.gene041403.t1 MTR_7g112430 30.159 252 131 10 121 348 65 295 1.60e-14 75.1
MS.gene041403.t1 MTR_2g033910 27.092 251 143 9 123 337 74 320 1.98e-14 74.3
MS.gene041403.t1 MTR_4g094208 33.108 148 86 5 98 244 43 178 2.89e-14 71.6
MS.gene041403.t1 MTR_0015s0140 24.658 292 143 11 124 353 79 355 7.43e-14 72.8
MS.gene041403.t1 MTR_8g017240 29.075 227 117 9 120 311 82 299 1.10e-13 72.0
MS.gene041403.t1 MTR_1g083750 29.084 251 135 9 121 348 65 295 1.24e-13 72.4
MS.gene041403.t1 MTR_5g080680 31.788 151 87 3 124 258 132 282 3.23e-13 69.7
MS.gene041403.t1 MTR_1g016620 25.991 227 115 7 123 307 67 282 1.23e-12 68.9
MS.gene041403.t1 MTR_4g113345 29.918 244 139 11 115 341 53 281 1.65e-12 68.2
MS.gene041403.t1 MTR_5g005810 25.200 250 162 9 120 352 332 573 1.84e-12 68.9
MS.gene041403.t1 MTR_4g113480 26.744 258 137 10 124 344 74 316 3.38e-12 68.2
MS.gene041403.t1 MTR_7g029240 28.826 281 154 15 121 378 65 322 9.39e-12 66.6
MS.gene041403.t1 MTR_7g060770 24.535 269 158 10 116 341 254 520 1.20e-11 66.6
MS.gene041403.t1 MTR_8g074930 27.189 217 100 8 186 352 35 243 3.35e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene041403.t1 AT2G25620 55.848 342 136 3 44 383 60 388 1.04e-130 380
MS.gene041403.t1 AT2G25620 55.848 342 136 3 44 383 60 388 1.04e-130 380
MS.gene041403.t1 AT2G33700 54.605 304 133 2 80 383 79 377 2.30e-115 341
MS.gene041403.t1 AT3G51470 50.329 304 140 4 79 382 22 314 1.47e-102 306
MS.gene041403.t1 AT3G51470 50.329 304 140 4 79 382 66 358 2.82e-102 307
MS.gene041403.t1 AT3G62260 47.256 328 148 6 72 383 64 382 5.83e-90 276
MS.gene041403.t1 AT3G62260 47.256 328 148 6 72 383 65 383 6.34e-90 276
MS.gene041403.t1 AT1G48040 43.296 358 183 7 36 382 32 380 9.25e-87 268
MS.gene041403.t1 AT3G62260 48.344 302 131 6 98 383 1 293 3.01e-82 253
MS.gene041403.t1 AT3G17250 40.179 336 180 7 61 383 94 421 7.11e-78 246
MS.gene041403.t1 AT5G10740 38.148 270 136 6 87 350 35 279 3.40e-46 162
MS.gene041403.t1 AT5G10740 38.148 270 136 6 87 350 35 279 3.40e-46 162
MS.gene041403.t1 AT5G24940 37.407 270 138 6 87 350 35 279 4.56e-45 161
MS.gene041403.t1 AT1G07160 35.338 266 141 6 93 348 130 374 2.21e-41 150
MS.gene041403.t1 AT4G31750 37.190 242 135 4 115 353 55 282 3.81e-41 147
MS.gene041403.t1 AT4G31750 37.190 242 135 4 115 353 55 282 3.81e-41 147
MS.gene041403.t1 AT4G31750 37.190 242 135 4 115 353 55 282 3.82e-41 147
MS.gene041403.t1 AT2G30020 35.094 265 142 6 93 348 147 390 4.71e-39 144
MS.gene041403.t1 AT1G67820 37.778 225 111 5 93 310 92 294 3.27e-38 142
MS.gene041403.t1 AT1G18030 28.219 365 219 9 10 351 5 349 4.68e-38 140
MS.gene041403.t1 AT1G67820 37.778 225 111 5 93 310 128 330 5.95e-38 142
MS.gene041403.t1 AT1G78200 31.538 260 150 6 98 351 1 238 2.30e-37 135
MS.gene041403.t1 AT1G78200 31.538 260 150 6 98 351 1 238 2.30e-37 135
MS.gene041403.t1 AT1G43900 34.836 244 129 7 117 351 147 369 5.40e-37 138
MS.gene041403.t1 AT1G78200 32.308 260 148 7 98 351 46 283 1.19e-36 135
MS.gene041403.t1 AT1G78200 32.308 260 148 7 98 351 46 283 1.19e-36 135
MS.gene041403.t1 AT1G78200 32.308 260 148 7 98 351 46 283 1.19e-36 135
MS.gene041403.t1 AT5G53140 32.766 235 141 4 120 351 128 348 2.04e-36 137
MS.gene041403.t1 AT5G53140 32.766 235 141 4 120 351 128 348 2.04e-36 137
MS.gene041403.t1 AT1G22280 32.950 261 142 9 98 351 47 281 3.75e-36 133
MS.gene041403.t1 AT2G40180 33.091 275 152 7 93 355 136 390 5.08e-36 135
MS.gene041403.t1 AT2G20630 32.210 267 143 10 94 351 42 279 2.61e-34 128
MS.gene041403.t1 AT2G40860 31.802 283 156 8 80 348 289 548 2.67e-34 134
MS.gene041403.t1 AT2G40860 31.802 283 156 8 80 348 387 646 2.83e-34 134
MS.gene041403.t1 AT2G20630 31.955 266 143 10 94 350 42 278 4.87e-34 128
MS.gene041403.t1 AT1G22280 32.210 267 142 10 98 351 47 287 9.38e-34 127
MS.gene041403.t1 AT4G28400 33.891 239 129 7 122 351 43 261 3.63e-33 125
MS.gene041403.t1 AT4G28400 33.891 239 129 7 122 351 65 283 8.23e-33 124
MS.gene041403.t1 AT2G25070 35.593 177 109 1 184 355 158 334 4.00e-32 124
MS.gene041403.t1 AT2G25070 35.593 177 109 1 184 355 158 334 4.00e-32 124
MS.gene041403.t1 AT1G34750 31.439 264 137 8 111 348 34 279 4.23e-32 122
MS.gene041403.t1 AT1G34750 31.439 264 137 8 111 348 34 279 4.23e-32 122
MS.gene041403.t1 AT1G34750 31.439 264 137 8 111 348 34 279 4.23e-32 122
MS.gene041403.t1 AT4G31860 35.028 177 110 1 184 355 158 334 3.10e-31 122
MS.gene041403.t1 AT4G27800 26.765 340 202 7 68 372 43 370 4.14e-31 122
MS.gene041403.t1 AT3G15260 33.610 241 137 6 117 351 66 289 6.05e-31 119
MS.gene041403.t1 AT3G15260 33.610 241 137 6 117 351 66 289 6.05e-31 119
MS.gene041403.t1 AT2G34740 31.780 236 136 8 122 350 117 334 1.34e-30 120
MS.gene041403.t1 AT2G40860 30.882 272 151 8 80 337 387 635 1.36e-29 120
MS.gene041403.t1 AT1G18030 27.848 316 186 8 10 303 5 300 5.97e-29 114
MS.gene041403.t1 AT4G26080 29.114 316 169 8 75 348 118 420 7.48e-29 117
MS.gene041403.t1 AT4G31860 29.924 264 129 4 84 301 22 275 1.41e-28 113
MS.gene041403.t1 AT5G51760 29.450 309 156 7 90 348 83 379 6.43e-28 113
MS.gene041403.t1 AT5G51760 32.143 252 131 5 98 321 121 360 1.06e-27 113
MS.gene041403.t1 AT4G27800 27.517 298 169 7 68 330 43 328 1.76e-27 111
MS.gene041403.t1 AT4G27800 27.797 295 166 7 68 327 43 325 2.65e-27 110
MS.gene041403.t1 AT1G17550 28.159 277 143 6 124 353 237 504 3.38e-27 113
MS.gene041403.t1 AT1G17550 28.159 277 143 6 124 353 237 504 3.38e-27 113
MS.gene041403.t1 AT4G31860 41.045 134 79 0 184 317 158 291 6.50e-27 108
MS.gene041403.t1 AT2G29380 31.518 257 134 9 124 348 112 358 2.94e-26 108
MS.gene041403.t1 AT1G07430 32.692 208 114 5 124 314 157 355 3.01e-26 109
MS.gene041403.t1 AT1G72770 27.174 276 146 6 124 353 238 504 4.32e-26 109
MS.gene041403.t1 AT1G72770 27.174 276 146 6 124 353 238 504 4.32e-26 109
MS.gene041403.t1 AT1G72770 27.174 276 146 6 124 353 238 504 4.32e-26 109
MS.gene041403.t1 AT5G57050 27.532 316 192 8 49 338 33 337 4.78e-26 108
MS.gene041403.t1 AT5G57050 30.568 229 134 5 124 338 160 377 7.26e-26 108
MS.gene041403.t1 AT4G28400 35.079 191 99 6 122 303 65 239 3.37e-25 103
MS.gene041403.t1 AT2G34740 33.862 189 104 7 122 303 113 287 2.17e-24 102
MS.gene041403.t1 AT2G34740 33.862 189 104 7 122 303 131 305 2.74e-24 102
MS.gene041403.t1 AT1G34750 31.507 219 110 7 111 303 34 238 1.02e-23 99.0
MS.gene041403.t1 AT3G11410 30.556 216 116 5 124 314 137 343 1.88e-23 101
MS.gene041403.t1 AT5G59220 32.195 205 116 4 124 314 148 343 2.46e-23 100
MS.gene041403.t1 AT2G20050 29.054 296 138 13 124 361 143 424 7.00e-23 101
MS.gene041403.t1 AT2G20050 29.054 296 138 13 124 361 143 424 7.40e-23 101
MS.gene041403.t1 AT2G40860 31.004 229 124 7 80 294 387 595 6.41e-22 98.2
MS.gene041403.t1 AT4G08260 31.034 232 119 7 119 348 14 206 1.17e-21 92.4
MS.gene041403.t1 AT5G02760 28.975 283 145 10 123 354 71 348 1.46e-21 95.5
MS.gene041403.t1 AT3G16800 30.147 272 143 11 118 351 87 349 5.60e-20 90.5
MS.gene041403.t1 AT3G16800 30.147 272 143 11 118 351 87 349 5.60e-20 90.5
MS.gene041403.t1 AT3G16800 30.147 272 143 11 118 351 87 349 5.60e-20 90.5
MS.gene041403.t1 AT3G27140 28.049 246 111 6 119 362 14 195 6.18e-18 82.8
MS.gene041403.t1 AT1G47380 29.368 269 145 11 121 365 61 308 6.59e-18 85.1
MS.gene041403.t1 AT1G09160 30.147 272 140 11 121 363 65 315 9.28e-18 84.7
MS.gene041403.t1 AT1G09160 30.147 272 140 11 121 363 65 315 9.28e-18 84.7
MS.gene041403.t1 AT4G32950 26.207 290 171 10 93 356 50 322 2.11e-17 82.8
MS.gene041403.t1 AT3G51370 26.645 304 144 13 123 360 78 368 2.18e-17 83.2
MS.gene041403.t1 AT3G51370 26.645 304 144 13 123 360 78 368 2.18e-17 83.2
MS.gene041403.t1 AT3G16800 29.278 263 139 11 127 351 1 254 4.35e-17 80.9
MS.gene041403.t1 AT3G16800 29.278 263 139 11 127 351 1 254 4.35e-17 80.9
MS.gene041403.t1 AT1G22280 32.215 149 86 5 98 244 47 182 5.99e-17 79.0
MS.gene041403.t1 AT5G57050 32.450 151 86 4 124 260 160 308 1.06e-16 80.5
MS.gene041403.t1 AT4G38520 26.573 286 146 9 123 352 80 357 1.35e-16 81.3
MS.gene041403.t1 AT4G38520 26.573 286 146 9 123 352 80 357 1.35e-16 81.3
MS.gene041403.t1 AT3G12620 26.712 292 140 11 123 353 82 360 1.75e-16 80.9
MS.gene041403.t1 AT3G12620 26.712 292 140 11 123 353 82 360 1.75e-16 80.9
MS.gene041403.t1 AT5G66080 27.668 253 138 11 123 337 81 326 1.36e-15 78.2
MS.gene041403.t1 AT3G55050 27.273 286 144 11 123 352 83 360 2.15e-15 77.4
MS.gene041403.t1 AT3G55050 27.273 286 144 11 123 352 83 360 2.15e-15 77.4
MS.gene041403.t1 AT5G59220 34.000 150 85 3 124 259 148 297 4.72e-15 75.5
MS.gene041403.t1 AT1G72770 30.488 164 85 3 124 258 238 401 1.23e-13 72.4
MS.gene041403.t1 AT1G72770 30.488 164 85 3 124 258 238 401 1.23e-13 72.4
MS.gene041403.t1 AT5G19280 27.757 263 152 11 109 352 336 579 5.06e-13 70.9
MS.gene041403.t1 AT4G32950 28.571 231 125 9 93 300 50 263 7.70e-13 68.9
MS.gene041403.t1 AT5G26010 24.290 317 175 11 81 356 38 330 1.56e-12 68.6
MS.gene041403.t1 AT5G01700 27.155 232 119 8 119 310 24 245 5.17e-12 67.0
MS.gene041403.t1 AT5G01700 27.155 232 119 8 119 310 73 294 1.06e-11 66.2
MS.gene041403.t1 AT5G27930 30.088 226 105 11 118 300 86 301 2.64e-11 64.7
MS.gene041403.t1 AT1G79630 29.714 175 96 5 156 312 83 248 6.58e-11 63.9
MS.gene041403.t1 AT1G79630 29.714 175 96 5 156 312 83 248 6.58e-11 63.9
MS.gene041403.t1 AT1G79630 29.714 175 96 5 156 312 83 248 6.58e-11 63.9
MS.gene041403.t1 AT1G79630 29.714 175 96 5 156 312 83 248 6.58e-11 63.9
MS.gene041403.t1 AT1G79630 29.714 175 96 5 156 312 123 288 8.28e-11 63.5
MS.gene041403.t1 AT1G79630 29.714 175 96 5 156 312 123 288 8.28e-11 63.5

Find 88 sgRNAs with CRISPR-Local

Find 162 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCTTTGACTGCAATTATATT+TGG 0.135131 8.2:-12616339 MS.gene041403:CDS
GAGGACTTGGCAAAGAAATT+TGG 0.243759 8.2:-12616760 MS.gene041403:CDS
ATTGAGTCTTCCCTGTCTTC+TGG 0.285045 8.2:-12616369 MS.gene041403:CDS
TAATTGGAAGTGATGGAATA+TGG 0.292557 8.2:-12615724 MS.gene041403:CDS
TAGATGGCATACACCATAAA+AGG 0.303590 8.2:+12616708 None:intergenic
ATCCTTTCTTTCATGCATAA+AGG 0.303955 8.2:+12615929 None:intergenic
ACACTAACAGGAAATGAATT+AGG 0.317080 8.2:+12617641 None:intergenic
TAGCAAAATCTACAGCGTTT+TGG 0.332140 8.2:+12615687 None:intergenic
TAGCCAATGCCGGGGACTGC+AGG 0.348722 8.2:-12616003 MS.gene041403:CDS
TGATCAAGATAATAATAATA+TGG 0.349493 8.2:-12617780 MS.gene041403:CDS
CAATGTTGCAAGGAAATAAT+AGG 0.358586 8.2:-12615632 MS.gene041403:CDS
TTGATAACAGAAGGATTTCA+TGG 0.366492 8.2:-12617751 MS.gene041403:CDS
ATCAGAACCACCACCACCTT+TGG 0.374581 8.2:-12615552 MS.gene041403:CDS
ATTGATGATGGTTACTTGAA+TGG 0.410247 8.2:-12615881 MS.gene041403:CDS
ATGCTTCTCCTGACTCTGTT+AGG 0.416065 8.2:+12615518 None:intergenic
GAATAATCTATATTTCTAAC+AGG 0.426263 8.2:+12615465 None:intergenic
TTCGTCCCTACACTTCGGTC+GGG 0.430679 8.2:-12616838 MS.gene041403:CDS
ATGTGAGTATCTTCCATGTA+AGG 0.437191 8.2:+12616790 None:intergenic
TTCTATTACCCCTCCAGCTC+GGG 0.442074 8.2:+12615970 None:intergenic
TATTCTGTGCAGGTATTTGA+TGG 0.443156 8.2:-12616537 MS.gene041403:intron
TCACATATGCATTGAGGACT+TGG 0.445711 8.2:-12616773 MS.gene041403:CDS
ATGAATTAGGAGCACTGATC+TGG 0.445790 8.2:+12617654 None:intergenic
CTTTACTTGTAGCCAATGCC+GGG 0.446990 8.2:-12616012 MS.gene041403:CDS
GCATAAAGGCCTATGATCTC+TGG 0.449074 8.2:+12615943 None:intergenic
AAGGAAGTGAGTGGAAGAAA+TGG 0.449462 8.2:-12615809 MS.gene041403:CDS
TCGTCCCTACACTTCGGTCG+GGG 0.449528 8.2:-12616837 MS.gene041403:CDS
CACCACCTTTGGTTGTTGAA+AGG 0.451444 8.2:-12615541 MS.gene041403:CDS
AGTTCTGGCTCAGCACTTAG+TGG 0.454686 8.2:+12615785 None:intergenic
AGCCCTGCAGTCCCCGGCAT+TGG 0.455154 8.2:+12616000 None:intergenic
TATTGGAGGTCGCCCTTACA+TGG 0.456928 8.2:-12616803 MS.gene041403:CDS
TCTTTACTTGTAGCCAATGC+CGG 0.457915 8.2:-12616013 MS.gene041403:CDS
TGACGCGGGCTCTAGGCAAC+TGG 0.460183 8.2:-12615847 MS.gene041403:CDS
CTAGGCGTGACGCGGGCTCT+AGG 0.463224 8.2:-12615854 MS.gene041403:CDS
TTGAAAGGCCTAACAGAGTC+AGG 0.464128 8.2:-12615526 MS.gene041403:CDS
AATGTCATCAATTTAAGTTC+TGG 0.464919 8.2:+12615770 None:intergenic
CTTGGCGGATTTATTGATGA+TGG 0.469287 8.2:-12615893 MS.gene041403:CDS
CTAGGCAACTGGCATCTTGA+AGG 0.481839 8.2:-12615836 MS.gene041403:CDS
GGCCTTTATGCATGAAAGAA+AGG 0.485159 8.2:-12615931 MS.gene041403:CDS
CAAAACAGCCCTGCAGTCCC+CGG 0.507129 8.2:+12615994 None:intergenic
GTGTAGGGACGAAATTCATC+AGG 0.507331 8.2:+12616848 None:intergenic
TTTCGTCCCTACACTTCGGT+CGG 0.513079 8.2:-12616839 MS.gene041403:CDS
AAGCAGTTGTACCAGAAGAC+AGG 0.513476 8.2:+12616358 None:intergenic
CTGGCATCTTGAAGGAATGA+AGG 0.515181 8.2:-12615828 MS.gene041403:CDS
TAGAATTGTCCAGAGATCAT+AGG 0.529312 8.2:-12615952 MS.gene041403:CDS
TCAACAACCAAAGGTGGTGG+TGG 0.531756 8.2:+12615545 None:intergenic
AATTGGAAGTGATGGAATAT+GGG 0.533968 8.2:-12615723 MS.gene041403:CDS
AGGAGCACTGATCTGGTCAC+TGG 0.548106 8.2:+12617661 None:intergenic
AGCCAATGCCGGGGACTGCA+GGG 0.552576 8.2:-12616002 MS.gene041403:CDS
AGATAATTTAACTGTTGTGA+TGG 0.557874 8.2:-12615585 MS.gene041403:CDS
TTGTTCGCGATCATCTGCCG+AGG 0.564331 8.2:-12616488 MS.gene041403:CDS
TGGAGAAACTTGATAACAGA+AGG 0.570639 8.2:-12617760 MS.gene041403:CDS
TATGCATGAAAGAAAGGATG+AGG 0.570968 8.2:-12615925 MS.gene041403:CDS
ATTCTATTACCCCTCCAGCT+CGG 0.573089 8.2:+12615969 None:intergenic
CTTCCCTCTTGAACTCGAGA+AGG 0.574740 8.2:-12616445 MS.gene041403:CDS
ATGAGGATCGAGTCTCTTGG+CGG 0.579884 8.2:-12615908 MS.gene041403:CDS
CGTCCCTACACTTCGGTCGG+GGG 0.582208 8.2:-12616836 MS.gene041403:CDS
GTGCAGGTATTTGATGGACA+TGG 0.586679 8.2:-12616531 MS.gene041403:intron
TGACTGCAATTATATTTGGA+CGG 0.586908 8.2:-12616335 MS.gene041403:intron
TTAGGCCTTTCAACAACCAA+AGG 0.587308 8.2:+12615536 None:intergenic
ACCACCTTCTCGAGTTCAAG+AGG 0.589310 8.2:+12616441 None:intergenic
AGGATGAGGATCGAGTCTCT+TGG 0.591958 8.2:-12615911 MS.gene041403:CDS
TGGACAGCTAGGCGTGACGC+GGG 0.593529 8.2:-12615861 MS.gene041403:CDS
AACTCGAGAAGGTGGTCACA+AGG 0.594388 8.2:-12616434 MS.gene041403:CDS
CTTTCAACAACCAAAGGTGG+TGG 0.598090 8.2:+12615542 None:intergenic
TGAATTTCGTCCCTACACTT+CGG 0.599296 8.2:-12616843 MS.gene041403:CDS
TGTGAGTATCTTCCATGTAA+GGG 0.599872 8.2:+12616791 None:intergenic
CAGGAGAAGCATATCTGCTG+AGG 0.600005 8.2:-12615507 MS.gene041403:CDS
CCCTCTTGAACTCGAGAAGG+TGG 0.601383 8.2:-12616442 MS.gene041403:CDS
AGCAGTTGTACCAGAAGACA+GGG 0.602803 8.2:+12616359 None:intergenic
TGCAAAAGATCACAATGCAA+TGG 0.604015 8.2:+12617728 None:intergenic
ATGGACAGCTAGGCGTGACG+CGG 0.605836 8.2:-12615862 MS.gene041403:CDS
GCATCCTCAACAATCACCCT+CGG 0.609381 8.2:+12616471 None:intergenic
GGTTACTTGAATGGACAGCT+AGG 0.611625 8.2:-12615872 MS.gene041403:CDS
GGCCTTTCAACAACCAAAGG+TGG 0.612573 8.2:+12615539 None:intergenic
GAAGGAATGAAGGAAGTGAG+TGG 0.614412 8.2:-12615818 MS.gene041403:CDS
TTAGCTGGAAAGCATTTGTG+AGG 0.615709 8.2:-12616899 MS.gene041403:intron
AGGAGAAGCATATCTGCTGA+GGG 0.620558 8.2:-12615506 MS.gene041403:CDS
GGGGAGTGGTCTGATATTGG+AGG 0.624136 8.2:-12616817 MS.gene041403:CDS
TGTTCGCGATCATCTGCCGA+GGG 0.626852 8.2:-12616487 MS.gene041403:CDS
AGATACTCACATATGCATTG+AGG 0.642485 8.2:-12616779 MS.gene041403:CDS
GTCAACATGTGTGTGCAAGA+AGG 0.652909 8.2:-12617812 None:intergenic
TGATGTGAAACAATGTTGCA+AGG 0.658172 8.2:-12615642 MS.gene041403:CDS
CCACCTTCTCGAGTTCAAGA+GGG 0.662371 8.2:+12616442 None:intergenic
TTTACTTGTAGCCAATGCCG+GGG 0.668453 8.2:-12616011 MS.gene041403:CDS
AGGTATTTGATGGACATGGA+GGG 0.676243 8.2:-12616527 MS.gene041403:CDS
TCTGCCGAGGGTGATTGTTG+AGG 0.686396 8.2:-12616475 MS.gene041403:CDS
CAGGTATTTGATGGACATGG+AGG 0.705749 8.2:-12616528 MS.gene041403:CDS
ATAGGCGAAGCAATAAAGCG+AGG 0.718434 8.2:-12615614 MS.gene041403:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATAATGATAATTAAACA+AGG + chr8.2:12617235-12617254 None:intergenic 10.0%
!! AAAGAATAATAATTTCTAAT+GGG - chr8.2:12617144-12617163 MS.gene041403:intron 10.0%
!!! AAATGAAATTATGATTTTTA+AGG - chr8.2:12616166-12616185 MS.gene041403:intron 10.0%
!!! AATGAAATTATGATTTTTAA+GGG - chr8.2:12616167-12616186 MS.gene041403:intron 10.0%
!! GAAAGAATAATAATTTCTAA+TGG - chr8.2:12617143-12617162 MS.gene041403:intron 15.0%
!! TAATCATGATTTAACATTAA+AGG - chr8.2:12616711-12616730 MS.gene041403:intron 15.0%
!! TGATCAAGATAATAATAATA+TGG - chr8.2:12615498-12615517 MS.gene041403:CDS 15.0%
!!! AGATAAGAATTTAAAACAAA+AGG + chr8.2:12616071-12616090 None:intergenic 15.0%
!!! CTTTTTTCTAAATTTGAAAT+TGG - chr8.2:12616097-12616116 MS.gene041403:intron 15.0%
!! AAAAGAAAATTTATGACAAC+AGG + chr8.2:12616613-12616632 None:intergenic 20.0%
!! AATGCATAATTAAGCAATTA+AGG + chr8.2:12616027-12616046 None:intergenic 20.0%
!! AATTAACAAAATCAGTTAGA+TGG + chr8.2:12616589-12616608 None:intergenic 20.0%
!! CTAGCTTATAATATAACATA+GGG + chr8.2:12615730-12615749 None:intergenic 20.0%
!! TAGCTTATAATATAACATAG+GGG + chr8.2:12615729-12615748 None:intergenic 20.0%
!!! ACTAGCTTATAATATAACAT+AGG + chr8.2:12615731-12615750 None:intergenic 20.0%
!!! CATTTTTGTGATTATAAGAT+AGG - chr8.2:12616654-12616673 MS.gene041403:intron 20.0%
!!! GTTATATTATAAGCTAGTTT+TGG - chr8.2:12615733-12615752 MS.gene041403:CDS 20.0%
!!! TAGTTTTGGATTTTTTAAGA+TGG - chr8.2:12615747-12615766 MS.gene041403:CDS 20.0%
! AAGTATAATGAAAGTCTAAG+AGG + chr8.2:12615786-12615805 None:intergenic 25.0%
! ACATATCTAAGAGAATTTCA+AGG + chr8.2:12616201-12616220 None:intergenic 25.0%
! AGATAATTTAACTGTTGTGA+TGG - chr8.2:12617693-12617712 MS.gene041403:CDS 25.0%
! CTAATCACATCTTATATCAA+AGG + chr8.2:12616250-12616269 None:intergenic 25.0%
! CTTAGACTTTCATTATACTT+AGG - chr8.2:12615786-12615805 MS.gene041403:CDS 25.0%
! CTTTCATTATACTTAGGATA+TGG - chr8.2:12615792-12615811 MS.gene041403:CDS 25.0%
! GAAAATTGCATTCATAACAA+AGG - chr8.2:12616676-12616695 MS.gene041403:intron 25.0%
! GAAGAAAAGAAGAACAAAAA+TGG + chr8.2:12615707-12615726 None:intergenic 25.0%
! GATTTAACATTAAAGGCAAA+TGG - chr8.2:12616718-12616737 MS.gene041403:intron 25.0%
!! AATGTCATCAATTTAAGTTC+TGG + chr8.2:12617511-12617530 None:intergenic 25.0%
!! ATAAAAATATTGACTGCTAC+GGG - chr8.2:12617092-12617111 MS.gene041403:intron 25.0%
!! ATTTTTATCTGTGTCATGTT+CGG + chr8.2:12617080-12617099 None:intergenic 25.0%
!! GATAAAAATATTGACTGCTA+CGG - chr8.2:12617091-12617110 MS.gene041403:intron 25.0%
!! TTATCATTATTTTCCTGTAC+AGG - chr8.2:12617242-12617261 MS.gene041403:intron 25.0%
!! TTATGTTATTTATCCAAACC+AGG - chr8.2:12616001-12616020 MS.gene041403:CDS 25.0%
!!! ATGGTCTTATGGTTATAAAA+TGG + chr8.2:12616995-12617014 None:intergenic 25.0%
!!! TTTAAGATGGTTTTCCAATA+AGG - chr8.2:12615760-12615779 MS.gene041403:CDS 25.0%
!!! TTTTTGATAATTGGAAGTGA+TGG - chr8.2:12617547-12617566 MS.gene041403:intron 25.0%
ACAAAAATGGCATAACAAGA+AGG + chr8.2:12615694-12615713 None:intergenic 30.0%
ACAAAAGAAAGAGAAGATGA+AGG + chr8.2:12615670-12615689 None:intergenic 30.0%
ACACTAACAGGAAATGAATT+AGG + chr8.2:12615640-12615659 None:intergenic 30.0%
ATAATTAAGCAATTAAGGCC+TGG + chr8.2:12616022-12616041 None:intergenic 30.0%
ATCAGCTGAAAACAACTTAT+AGG + chr8.2:12615871-12615890 None:intergenic 30.0%
ATCCTTTCTTTCATGCATAA+AGG + chr8.2:12617352-12617371 None:intergenic 30.0%
CAATGTTGCAAGGAAATAAT+AGG - chr8.2:12617646-12617665 MS.gene041403:intron 30.0%
GCTTTGACTGCAATTATATT+TGG - chr8.2:12616939-12616958 MS.gene041403:intron 30.0%
GGTTATAAAATGGCAAAGAA+TGG + chr8.2:12616985-12617004 None:intergenic 30.0%
TATAAAATGGCAAAGAATGG+TGG + chr8.2:12616982-12617001 None:intergenic 30.0%
TGACTGCAATTATATTTGGA+CGG - chr8.2:12616943-12616962 MS.gene041403:intron 30.0%
! AATTGGAAGTGATGGAATAT+GGG - chr8.2:12617555-12617574 MS.gene041403:intron 30.0%
! ATAACCATAAGACCATTTTG+TGG - chr8.2:12616999-12617018 MS.gene041403:intron 30.0%
! TAATTGGAAGTGATGGAATA+TGG - chr8.2:12617554-12617573 MS.gene041403:intron 30.0%
! TTGATAACAGAAGGATTTCA+TGG - chr8.2:12615527-12615546 MS.gene041403:CDS 30.0%
!! ATAAGATGTGATTAGTCTCT+AGG - chr8.2:12616255-12616274 MS.gene041403:intron 30.0%
!! ATTGATGATGGTTACTTGAA+TGG - chr8.2:12617397-12617416 MS.gene041403:intron 30.0%
!! TAAGATGTGATTAGTCTCTA+GGG - chr8.2:12616256-12616275 MS.gene041403:intron 30.0%
!!! TTTCTGTGCATTATTTTAGC+TGG - chr8.2:12616364-12616383 MS.gene041403:CDS 30.0%
AGATACTCACATATGCATTG+AGG - chr8.2:12616499-12616518 MS.gene041403:CDS 35.0%
ATGTGAGTATCTTCCATGTA+AGG + chr8.2:12616491-12616510 None:intergenic 35.0%
CAACACGACTATAACTCTAA+TGG + chr8.2:12617121-12617140 None:intergenic 35.0%
CATTAGAGTTATAGTCGTGT+TGG - chr8.2:12617119-12617138 MS.gene041403:intron 35.0%
GAAGGAAATCAAACACTAAC+AGG + chr8.2:12615652-12615671 None:intergenic 35.0%
TAGAATTGTCCAGAGATCAT+AGG - chr8.2:12617326-12617345 MS.gene041403:intron 35.0%
TAGATGGCATACACCATAAA+AGG + chr8.2:12616573-12616592 None:intergenic 35.0%
TATGATTGTATGCATTCCCT+AGG + chr8.2:12617209-12617228 None:intergenic 35.0%
TATGCATGAAAGAAAGGATG+AGG - chr8.2:12617353-12617372 MS.gene041403:intron 35.0%
TATTCTGTGCAGGTATTTGA+TGG - chr8.2:12616741-12616760 MS.gene041403:CDS 35.0%
TGATGTGAAACAATGTTGCA+AGG - chr8.2:12617636-12617655 MS.gene041403:intron 35.0%
TGCAAAAGATCACAATGCAA+TGG + chr8.2:12615553-12615572 None:intergenic 35.0%
TGTGAGTATCTTCCATGTAA+GGG + chr8.2:12616490-12616509 None:intergenic 35.0%
! AGCTTGTCAAGATAGCTTTA+TGG - chr8.2:12615898-12615917 MS.gene041403:CDS 35.0%
! TAGCAAAATCTACAGCGTTT+TGG + chr8.2:12617594-12617613 None:intergenic 35.0%
! TGATCTTTTGCATGCTCAAA+TGG - chr8.2:12615561-12615580 MS.gene041403:CDS 35.0%
! TGGAGAAACTTGATAACAGA+AGG - chr8.2:12615518-12615537 MS.gene041403:CDS 35.0%
!! ACACATGTCGTTATTTTCCT+AGG - chr8.2:12617189-12617208 MS.gene041403:intron 35.0%
!! CACATGTCGTTATTTTCCTA+GGG - chr8.2:12617190-12617209 MS.gene041403:intron 35.0%
!! GACGAAGCTATTTCCTTTTA+TGG - chr8.2:12616557-12616576 MS.gene041403:intron 35.0%
!! GACGACGAGTTTTTGATAAT+TGG - chr8.2:12617538-12617557 MS.gene041403:intron 35.0%
AAGGAAGTGAGTGGAAGAAA+TGG - chr8.2:12617469-12617488 MS.gene041403:intron 40.0%
CTACAAGTAAAGACCTGTAC+AGG + chr8.2:12617258-12617277 None:intergenic 40.0%
GAGGACTTGGCAAAGAAATT+TGG - chr8.2:12616518-12616537 MS.gene041403:CDS 40.0%
GGCCTTTATGCATGAAAGAA+AGG - chr8.2:12617347-12617366 MS.gene041403:intron 40.0%
GTGTCAGACATCACATTTAG+AGG + chr8.2:12617173-12617192 None:intergenic 40.0%
TAAGCAATTAAGGCCTGGTT+TGG + chr8.2:12616017-12616036 None:intergenic 40.0%
TCACATATGCATTGAGGACT+TGG - chr8.2:12616505-12616524 MS.gene041403:CDS 40.0%
TCTTTACTTGTAGCCAATGC+CGG - chr8.2:12617265-12617284 MS.gene041403:intron 40.0%
TGAATTTCGTCCCTACACTT+CGG - chr8.2:12616435-12616454 MS.gene041403:CDS 40.0%
TTAGGCCTTTCAACAACCAA+AGG + chr8.2:12617745-12617764 None:intergenic 40.0%
! ACGCTGTAGATTTTGCTAGA+AGG - chr8.2:12617596-12617615 MS.gene041403:intron 40.0%
! AGGTATTTGATGGACATGGA+GGG - chr8.2:12616751-12616770 MS.gene041403:CDS 40.0%
! CTCTCCACAAAATGGTCTTA+TGG + chr8.2:12617006-12617025 None:intergenic 40.0%
! CTGTAGATTTTGCTAGAAGG+AGG - chr8.2:12617599-12617618 MS.gene041403:intron 40.0%
! GAAAGTCTAAGAGGCCTTAT+TGG + chr8.2:12615777-12615796 None:intergenic 40.0%
!! ATGAATTAGGAGCACTGATC+TGG + chr8.2:12615627-12615646 None:intergenic 40.0%
!! CTTGGCGGATTTATTGATGA+TGG - chr8.2:12617385-12617404 MS.gene041403:intron 40.0%
!! TTAGCTGGAAAGCATTTGTG+AGG - chr8.2:12616379-12616398 MS.gene041403:CDS 40.0%
AAGCAGTTGTACCAGAAGAC+AGG + chr8.2:12616923-12616942 None:intergenic 45.0%
AGCAGTTGTACCAGAAGACA+GGG + chr8.2:12616922-12616941 None:intergenic 45.0%
AGGCAAATGGTATTCTGTGC+AGG - chr8.2:12616731-12616750 MS.gene041403:CDS 45.0%
ATAGGCGAAGCAATAAAGCG+AGG - chr8.2:12617664-12617683 MS.gene041403:CDS 45.0%
ATGCTTCTCCTGACTCTGTT+AGG + chr8.2:12617763-12617782 None:intergenic 45.0%
ATTCTATTACCCCTCCAGCT+CGG + chr8.2:12617312-12617331 None:intergenic 45.0%
ATTGAGTCTTCCCTGTCTTC+TGG - chr8.2:12616909-12616928 MS.gene041403:intron 45.0%
CACCACCTTTGGTTGTTGAA+AGG - chr8.2:12617737-12617756 MS.gene041403:CDS 45.0%
CTGGCATCTTGAAGGAATGA+AGG - chr8.2:12617450-12617469 MS.gene041403:intron 45.0%
CTTTACTTGTAGCCAATGCC+GGG - chr8.2:12617266-12617285 MS.gene041403:intron 45.0%
CTTTCAACAACCAAAGGTGG+TGG + chr8.2:12617739-12617758 None:intergenic 45.0%
GAAGGAATGAAGGAAGTGAG+TGG - chr8.2:12617460-12617479 MS.gene041403:intron 45.0%
GCATAAAGGCCTATGATCTC+TGG + chr8.2:12617338-12617357 None:intergenic 45.0%
GGTTACTTGAATGGACAGCT+AGG - chr8.2:12617406-12617425 MS.gene041403:intron 45.0%
GTGTAGGGACGAAATTCATC+AGG + chr8.2:12616433-12616452 None:intergenic 45.0%
TTGAAAGGCCTAACAGAGTC+AGG - chr8.2:12617752-12617771 MS.gene041403:CDS 45.0%
TTGTGCGACTCTCCACAAAA+TGG + chr8.2:12617014-12617033 None:intergenic 45.0%
TTTACTTGTAGCCAATGCCG+GGG - chr8.2:12617267-12617286 MS.gene041403:intron 45.0%
! AGGAGAAGCATATCTGCTGA+GGG - chr8.2:12617772-12617791 MS.gene041403:CDS 45.0%
! CAGGTATTTGATGGACATGG+AGG - chr8.2:12616750-12616769 MS.gene041403:CDS 45.0%
! GTGCAGGTATTTGATGGACA+TGG - chr8.2:12616747-12616766 MS.gene041403:CDS 45.0%
!! GGTGGTCACAAGGTCATTTT+TGG - chr8.2:12616854-12616873 MS.gene041403:CDS 45.0%
AACTCGAGAAGGTGGTCACA+AGG - chr8.2:12616844-12616863 MS.gene041403:CDS 50.0%
ACCACCTTCTCGAGTTCAAG+AGG + chr8.2:12616840-12616859 None:intergenic 50.0%
AGGATGAGGATCGAGTCTCT+TGG - chr8.2:12617367-12617386 MS.gene041403:intron 50.0%
ATCAGAACCACCACCACCTT+TGG - chr8.2:12617726-12617745 MS.gene041403:CDS 50.0%
ATGAGGATCGAGTCTCTTGG+CGG - chr8.2:12617370-12617389 MS.gene041403:intron 50.0%
CCACCTTCTCGAGTTCAAGA+GGG + chr8.2:12616839-12616858 None:intergenic 50.0%
CTAGGCAACTGGCATCTTGA+AGG - chr8.2:12617442-12617461 MS.gene041403:intron 50.0%
CTTCCCTCTTGAACTCGAGA+AGG - chr8.2:12616833-12616852 MS.gene041403:CDS 50.0%
GCATCCTCAACAATCACCCT+CGG + chr8.2:12616810-12616829 None:intergenic 50.0%
GGCCTTTCAACAACCAAAGG+TGG + chr8.2:12617742-12617761 None:intergenic 50.0%
GTGGAGAGTCGCACAACTTT+GGG - chr8.2:12617018-12617037 MS.gene041403:intron 50.0%
TATTGGAGGTCGCCCTTACA+TGG - chr8.2:12616475-12616494 MS.gene041403:CDS 50.0%
TGTGGAGAGTCGCACAACTT+TGG - chr8.2:12617017-12617036 MS.gene041403:intron 50.0%
TTCTATTACCCCTCCAGCTC+GGG + chr8.2:12617311-12617330 None:intergenic 50.0%
TTTCGTCCCTACACTTCGGT+CGG - chr8.2:12616439-12616458 MS.gene041403:CDS 50.0%
! CAGGAGAAGCATATCTGCTG+AGG - chr8.2:12617771-12617790 MS.gene041403:CDS 50.0%
! TCAACAACCAAAGGTGGTGG+TGG + chr8.2:12617736-12617755 None:intergenic 50.0%
!! AGTTCTGGCTCAGCACTTAG+TGG + chr8.2:12617496-12617515 None:intergenic 50.0%
!! TGTTCGGTGTCTGTGCATCT+TGG + chr8.2:12617064-12617083 None:intergenic 50.0%
CCCTCTTGAACTCGAGAAGG+TGG - chr8.2:12616836-12616855 MS.gene041403:CDS 55.0%
GAGTCGCACAACTTTGGGTC+AGG - chr8.2:12617023-12617042 MS.gene041403:intron 55.0%
GGGGAGTGGTCTGATATTGG+AGG - chr8.2:12616461-12616480 MS.gene041403:CDS 55.0%
GGTGTCTGTGCATCTTGGCT+AGG + chr8.2:12617059-12617078 None:intergenic 55.0%
TCGGGGGAGTGGTCTGATAT+TGG - chr8.2:12616458-12616477 MS.gene041403:CDS 55.0%
TCTGCCGAGGGTGATTGTTG+AGG - chr8.2:12616803-12616822 MS.gene041403:CDS 55.0%
TGTTCGCGATCATCTGCCGA+GGG - chr8.2:12616791-12616810 MS.gene041403:CDS 55.0%
TTCGTCCCTACACTTCGGTC+GGG - chr8.2:12616440-12616459 MS.gene041403:CDS 55.0%
TTGTTCGCGATCATCTGCCG+AGG - chr8.2:12616790-12616809 MS.gene041403:CDS 55.0%
! CTGTTTTGTCCCGAGCTGGA+GGG - chr8.2:12617299-12617318 MS.gene041403:intron 55.0%
! TGTTTTGTCCCGAGCTGGAG+GGG - chr8.2:12617300-12617319 MS.gene041403:intron 55.0%
!! AGGAGCACTGATCTGGTCAC+TGG + chr8.2:12615620-12615639 None:intergenic 55.0%
ACTCCCCCGACCGAAGTGTA+GGG + chr8.2:12616448-12616467 None:intergenic 60.0%
ATGGACAGCTAGGCGTGACG+CGG - chr8.2:12617416-12617435 MS.gene041403:intron 60.0%
CAAAACAGCCCTGCAGTCCC+CGG + chr8.2:12617287-12617306 None:intergenic 60.0%
TCGTCCCTACACTTCGGTCG+GGG - chr8.2:12616441-12616460 MS.gene041403:CDS 60.0%
!! AGGGCTGTTTTGTCCCGAGC+TGG - chr8.2:12617295-12617314 MS.gene041403:intron 60.0%
!! GCTGTTTTGTCCCGAGCTGG+AGG - chr8.2:12617298-12617317 MS.gene041403:intron 60.0%
AGCCAATGCCGGGGACTGCA+GGG - chr8.2:12617276-12617295 MS.gene041403:intron 65.0%
CACTCCCCCGACCGAAGTGT+AGG + chr8.2:12616449-12616468 None:intergenic 65.0%
CGTCCCTACACTTCGGTCGG+GGG - chr8.2:12616442-12616461 MS.gene041403:CDS 65.0%
CTACACTTCGGTCGGGGGAG+TGG - chr8.2:12616447-12616466 MS.gene041403:CDS 65.0%
TAGCCAATGCCGGGGACTGC+AGG - chr8.2:12617275-12617294 MS.gene041403:intron 65.0%
TGGACAGCTAGGCGTGACGC+GGG - chr8.2:12617417-12617436 MS.gene041403:intron 65.0%
!! TGACGCGGGCTCTAGGCAAC+TGG - chr8.2:12617431-12617450 MS.gene041403:intron 65.0%
AGCCCTGCAGTCCCCGGCAT+TGG + chr8.2:12617281-12617300 None:intergenic 70.0%
CTAGGCGTGACGCGGGCTCT+AGG - chr8.2:12617424-12617443 MS.gene041403:intron 70.0%


Chromosome Type Strat End Strand Name
chr8.2 gene 12615472 12617828 12615472 ID=MS.gene041403
chr8.2 mRNA 12615472 12617828 12615472 ID=MS.gene041403.t1;Parent=MS.gene041403
chr8.2 exon 12617649 12617828 12617649 ID=MS.gene041403.t1.exon1;Parent=MS.gene041403.t1
chr8.2 CDS 12617649 12617828 12617649 ID=cds.MS.gene041403.t1;Parent=MS.gene041403.t1
chr8.2 exon 12616720 12616917 12616720 ID=MS.gene041403.t1.exon2;Parent=MS.gene041403.t1
chr8.2 CDS 12616720 12616917 12616720 ID=cds.MS.gene041403.t1;Parent=MS.gene041403.t1
chr8.2 exon 12616336 12616547 12616336 ID=MS.gene041403.t1.exon3;Parent=MS.gene041403.t1
chr8.2 CDS 12616336 12616547 12616336 ID=cds.MS.gene041403.t1;Parent=MS.gene041403.t1
chr8.2 exon 12615472 12616036 12615472 ID=MS.gene041403.t1.exon4;Parent=MS.gene041403.t1
chr8.2 CDS 12615472 12616036 12615472 ID=cds.MS.gene041403.t1;Parent=MS.gene041403.t1
Gene Sequence

>MS.gene041403

ATGTGTGTGCAAGAAGGTGAACAAGTTGATCAAGATAATAATAATATGGAGAAACTTGATAACAGAAGGATTTCATGGCCATTGCATTGTGATCTTTTGCATGCTCAAATGGATAAATCAGAAAGAGACTCTTCTATTAGAATTTCCAGTGACCAGATCAGTGCTCCTAATTCATTTCCTGTTAGTGTTTGATTTCCTTCATCTTCTCTTTCTTTTGTTCCTTCTTGTTATGCCATTTTTGTTCTTCTTTTCTTCCCCTATGTTATATTATAAGCTAGTTTTGGATTTTTTAAGATGGTTTTCCAATAAGGCCTCTTAGACTTTCATTATACTTAGGATATGGCAAAAACACTTATGAAACTGTTTGAGAGAGCTTGTGAAAACAACTTTGACTTGCCTATAAGTTGTTTTCAGCTGATTTTCATAAGCTTGTCAAGATAGCTTTATGGAAACAGTTTATAACACATTTAGAAACTGTTTGAATTTATATTGTCTTTGTTAAATAAATAACATATACGTAAGTGCTTAATTATGTTATTTATCCAAACCAGGCCTTAATTGCTTAATTATGCATTTTTGTTTTGAGTTTTGTTTTTCCTTTTGTTTTAAATTCTTATCTAATTATCTTTTTTCTAAATTTGAAATTGGTCTTTTCTTGTTTGCTTCTTCTTCATCGTTGCTTGAAGAGAGCTGCAAATGAAATTATGATTTTTAAGGGTTGCTTGACCTTGAAATTCTCTTAGATATGTTTTTCAAAGACTATAGATGATGTTAGCCTTTGATATAAGATGTGATTAGTCTCTAGGGATGTATTTGTTAGCACAAATTGTTGATAAGATAAATGTAAGTTGCAGTGTTTAATTATCTGCATTCATTTTCTAATTATAATAACTTTCTGTGCATTATTTTAGCTGGAAAGCATTTGTGAGGATGCAGTGATTGCTGATAAAAAACAGAACCTGATGAATTTCGTCCCTACACTTCGGTCGGGGGAGTGGTCTGATATTGGAGGTCGCCCTTACATGGAAGATACTCACATATGCATTGAGGACTTGGCAAAGAAATTTGGTTACGATGTTGTCTGCGACGAAGCTATTTCCTTTTATGGTGTATGCCATCTAACTGATTTTGTTAATTGCCTGTTGTCATAAATTTTCTTTTATCTCTTACAACATATTATCTCATTTTTGTGATTATAAGATAGGAAAATTGCATTCATAACAAAGGATAAACATCTTTTAATCATGATTTAACATTAAAGGCAAATGGTATTCTGTGCAGGTATTTGATGGACATGGAGGGAAGAGTGCTGCGCAATTTGTTCGCGATCATCTGCCGAGGGTGATTGTTGAGGATGCTGACTTCCCTCTTGAACTCGAGAAGGTGGTCACAAGGTCATTTTTGGAGACTGATTCAGAGTTTGCAAAAACATGCTCTATTGAGTCTTCCCTGTCTTCTGGTACAACTGCTTTGACTGCAATTATATTTGGACGGTAAGCACTCGTCTCCACCATTCTTTGCCATTTTATAACCATAAGACCATTTTGTGGAGAGTCGCACAACTTTGGGTCAGGTGCAATACTTCCTAGCCAAGATGCACAGACACCGAACATGACACAGATAAAAATATTGACTGCTACGGGTGTCCATTAGAGTTATAGTCGTGTTGGAGAAAGAATAATAATTTCTAATGGGATACCTCTAAATGTGATGTCTGACACATGTCGTTATTTTCCTAGGGAATGCATACAATCATAGCACCTTGTTTAATTATCATTATTTTCCTGTACAGGTCTTTACTTGTAGCCAATGCCGGGGACTGCAGGGCTGTTTTGTCCCGAGCTGGAGGGGTAATAGAATTGTCCAGAGATCATAGGCCTTTATGCATGAAAGAAAGGATGAGGATCGAGTCTCTTGGCGGATTTATTGATGATGGTTACTTGAATGGACAGCTAGGCGTGACGCGGGCTCTAGGCAACTGGCATCTTGAAGGAATGAAGGAAGTGAGTGGAAGAAATGGACCACTAAGTGCTGAGCCAGAACTTAAATTGATGACATTGACAAAAGACGACGAGTTTTTGATAATTGGAAGTGATGGAATATGGGATGTTTTTCGTAGCCAAAACGCTGTAGATTTTGCTAGAAGGAGGCTTCAAGAGCACAATGATGTGAAACAATGTTGCAAGGAAATAATAGGCGAAGCAATAAAGCGAGGAGCAACAGATAATTTAACTGTTGTGATGGTATGTTTTCAATCAGAACCACCACCACCTTTGGTTGTTGAAAGGCCTAACAGAGTCAGGAGAAGCATATCTGCTGAGGGACTTCAGAATCTTAAATACCTGTTAGAAATATAG
Protein sequence

>MS.gene041403.t1

MCVQEGEQVDQDNNNMEKLDNRRISWPLHCDLLHAQMDKSERDSSIRISSDQISAPNSFPLESICEDAVIADKKQNLMNFVPTLRSGEWSDIGGRPYMEDTHICIEDLAKKFGYDVVCDEAISFYGVFDGHGGKSAAQFVRDHLPRVIVEDADFPLELEKVVTRSFLETDSEFAKTCSIESSLSSGTTALTAIIFGRSLLVANAGDCRAVLSRAGGVIELSRDHRPLCMKERMRIESLGGFIDDGYLNGQLGVTRALGNWHLEGMKEVSGRNGPLSAEPELKLMTLTKDDEFLIIGSDGIWDVFRSQNAVDFARRRLQEHNDVKQCCKEIIGEAIKRGATDNLTVVMVCFQSEPPPPLVVERPNRVRRSISAEGLQNLKYLLEI