AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene041480

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene041480.t1 MTR_4g117990 96.471 340 10 2 1 339 1 339 0.0 677
MS.gene041480.t1 MTR_7g081190 53.918 319 100 6 37 317 39 348 2.73e-84 260
MS.gene041480.t1 MTR_5g017500 42.636 129 60 2 16 142 6 122 7.27e-29 111
MS.gene041480.t1 MTR_3g014280 27.848 316 153 10 32 312 26 301 9.05e-20 89.0
MS.gene041480.t1 MTR_4g079960 34.328 134 79 5 15 143 2 131 5.07e-14 72.0
MS.gene041480.t1 MTR_4g079960 34.328 134 79 5 15 143 2 131 6.27e-14 72.0
MS.gene041480.t1 MTR_4g079960 35.897 117 69 3 29 143 19 131 1.03e-13 71.2
MS.gene041480.t1 MTR_1g061600 37.143 105 62 2 44 148 133 233 1.65e-13 71.6
MS.gene041480.t1 MTR_2g016140 29.907 107 71 3 32 135 9 114 2.23e-11 64.3
MS.gene041480.t1 MTR_2g016140 29.907 107 71 3 32 135 9 114 2.51e-11 64.3
MS.gene041480.t1 MTR_8g022290 34.066 91 55 1 18 103 37 127 4.72e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene041480.t1 AT2G44730 50.318 314 115 8 35 317 55 358 9.72e-82 253
MS.gene041480.t1 AT3G24860 30.986 284 145 7 37 309 58 301 2.15e-29 115
MS.gene041480.t1 AT4G17060 52.055 73 35 0 253 325 235 307 1.21e-18 85.5
MS.gene041480.t1 AT3G58630 33.333 117 69 1 43 150 25 141 2.75e-16 79.0
MS.gene041480.t1 AT3G58630 33.333 117 69 1 43 150 25 141 3.07e-16 78.6
MS.gene041480.t1 AT3G14180 33.103 145 81 4 2 135 33 172 5.35e-15 75.9
MS.gene041480.t1 AT3G10030 40.217 92 51 2 44 135 161 248 1.69e-13 71.6
MS.gene041480.t1 AT3G10030 40.217 92 51 2 44 135 161 248 1.78e-13 71.6
MS.gene041480.t1 AT3G54390 32.692 104 63 1 38 141 32 128 3.37e-11 63.5
MS.gene041480.t1 AT3G54390 32.692 104 63 1 38 141 48 144 3.84e-11 63.5

Find 109 sgRNAs with CRISPR-Local

Find 128 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GATGGAATTCTCTTATTAAT+AGG 0.203371 8.2:+11649253 None:intergenic
TCAGAAGAAAATTTCGATTC+AGG 0.251089 8.2:+11649592 None:intergenic
GTGGGTTCACTTTAAGCTTA+TGG 0.284555 8.2:-11649863 MS.gene041480:CDS
TTGGTGGAGGATTTAGGATT+AGG 0.294445 8.2:-11649630 MS.gene041480:CDS
GGTAGTTCTGATTCAGATTA+GGG 0.306682 8.2:+11649551 None:intergenic
TTCAGTGGTGGTGGTGGTAA+TGG 0.313432 8.2:-11649655 MS.gene041480:CDS
GGAGGAGTGGTGGTTGAAGG+AGG 0.317249 8.2:+11650228 None:intergenic
GCAACGGCGACGAAGGGATT+GGG 0.319411 8.2:-11649514 MS.gene041480:CDS
ATGGTGTTGGTGGAGGATTT+AGG 0.333436 8.2:-11649636 MS.gene041480:CDS
ATGAGAGCTAATGTTTCTTC+GGG 0.341504 8.2:+11650102 None:intergenic
AACGGTTTCGGTGGCGGAAT+TGG 0.341937 8.2:-11649685 MS.gene041480:CDS
GTGGGATAGGGAGTGGAGCG+GGG 0.351518 8.2:+11650160 None:intergenic
GGTGGGATAGGGAGTGGAGC+GGG 0.351713 8.2:+11650159 None:intergenic
AGGAGGGAGACGGCGGGTGG+AGG 0.351853 8.2:+11650137 None:intergenic
ATCGGAGAGAGGAGGAGGAG+TGG 0.352089 8.2:+11650215 None:intergenic
GCGGGGAGAGCTAGAGGGAG+GGG 0.354003 8.2:+11650177 None:intergenic
GGGTGATGGGTTTGTGAGAA+TGG 0.354314 8.2:-11649437 MS.gene041480:CDS
GGGAGGAGGGAGACGGCGGG+TGG 0.360567 8.2:+11650134 None:intergenic
TGGTAGTTCTGATTCAGATT+AGG 0.365457 8.2:+11649550 None:intergenic
CGGCGGGTGGAGGGTGGGAT+AGG 0.369593 8.2:+11650147 None:intergenic
GGAGGAGGAGTGGTGGTTGA+AGG 0.374630 8.2:+11650225 None:intergenic
GATGAGAGCTAATGTTTCTT+CGG 0.387662 8.2:+11650101 None:intergenic
TCTGATTCAGATTAGGGTTA+GGG 0.389893 8.2:+11649557 None:intergenic
AACCCACGCCGAATTGAATC+TGG 0.390473 8.2:+11649879 None:intergenic
GGGAGACGGCGGGTGGAGGG+TGG 0.391865 8.2:+11650141 None:intergenic
GGTGGTAATGGTGTTGGTGG+AGG 0.405466 8.2:-11649643 MS.gene041480:CDS
CGGGGAGAGCTAGAGGGAGG+GGG 0.410632 8.2:+11650178 None:intergenic
TTCTGATTCAGATTAGGGTT+AGG 0.411252 8.2:+11649556 None:intergenic
GGCAACGGCGACGAAGGGAT+TGG 0.421451 8.2:-11649515 MS.gene041480:CDS
GTGGAGGGTGGGATAGGGAG+TGG 0.424548 8.2:+11650153 None:intergenic
ATCTTGTGACGGCATTGAAC+AGG 0.427497 8.2:+11649961 None:intergenic
GGTGGTTTCAGTGGTGGTGG+TGG 0.429054 8.2:-11649661 MS.gene041480:CDS
GAGCGGGGAGAGCTAGAGGG+AGG 0.431213 8.2:+11650175 None:intergenic
CCCTTCGTCGCCGTTGCCAT+CGG 0.433830 8.2:+11649520 None:intergenic
CCGTTGCCATCGGTGGAGTA+TGG 0.434882 8.2:+11649530 None:intergenic
CTTTAAGCTTATGGATTCCA+TGG 0.436353 8.2:-11649854 MS.gene041480:CDS
TATAAGAACGGTTTCGGTGG+CGG 0.444102 8.2:-11649691 MS.gene041480:CDS
GAGGAGTGGTGGTTGAAGGA+GGG 0.444252 8.2:+11650229 None:intergenic
TCCTCATTCCAGATTCAATT+CGG 0.448751 8.2:-11649887 MS.gene041480:CDS
AAGTTGTATAAGAACGGTTT+CGG 0.449906 8.2:-11649697 MS.gene041480:CDS
GGAGGGAGACGGCGGGTGGA+GGG 0.450430 8.2:+11650138 None:intergenic
GCCGTCTCCCTCCTCCCTGC+TGG 0.452920 8.2:-11650128 MS.gene041480:CDS
TTCGGTGGCGGAATTGGTGG+TGG 0.453995 8.2:-11649679 MS.gene041480:CDS
GGGTGGGATAGGGAGTGGAG+CGG 0.454564 8.2:+11650158 None:intergenic
GGTGGTGGTGGTAATGGTGT+TGG 0.454794 8.2:-11649649 MS.gene041480:CDS
AGGAGTGGTGGTTGAAGGAG+GGG 0.455601 8.2:+11650230 None:intergenic
GGTTTCGGTGGCGGAATTGG+TGG 0.460045 8.2:-11649682 MS.gene041480:CDS
GTATCTGCAATTAAATTGTT+GGG 0.463369 8.2:-11649457 MS.gene041480:CDS
TGTATCTGCAATTAAATTGT+TGG 0.464334 8.2:-11649458 MS.gene041480:CDS
CAATTAAATTGTTGGGTGAT+GGG 0.471097 8.2:-11649450 MS.gene041480:CDS
AGTGGAGCGGGGAGAGCTAG+AGG 0.474026 8.2:+11650171 None:intergenic
GTCACAAGATGGAGAAGCTT+CGG 0.475663 8.2:-11649948 MS.gene041480:CDS
GGTGGTGGTAATGGTGTTGG+TGG 0.478648 8.2:-11649646 MS.gene041480:CDS
GGAGACGGCGGGTGGAGGGT+GGG 0.478675 8.2:+11650142 None:intergenic
GGTGGTGGTTTCAGTGGTGG+TGG 0.484009 8.2:-11649664 MS.gene041480:CDS
CATTATGCTTGTTGTGGTGA+TGG 0.487695 8.2:+11649235 None:intergenic
GCAATTAAATTGTTGGGTGA+TGG 0.491396 8.2:-11649451 MS.gene041480:CDS
ATCAATAAGTTGTATAAGAA+CGG 0.492654 8.2:-11649703 MS.gene041480:CDS
GTTGAAGGAGGGGAAGACAT+TGG 0.494183 8.2:+11650240 None:intergenic
CGTGACAAATGGTACTCTCT+TGG 0.494378 8.2:-11650069 MS.gene041480:CDS
GAGAATGGAGCAAAAGAAGA+TGG 0.500362 8.2:-11649422 MS.gene041480:CDS
GCAGATACAATCTCAGTCAA+TGG 0.500695 8.2:+11649472 None:intergenic
GGAGATTGAAACTATGAGAA+TGG 0.501557 8.2:-11649389 MS.gene041480:CDS
GGAGAGAGGAGGAGGAGTGG+TGG 0.506258 8.2:+11650218 None:intergenic
ACCAGCAGGGAGGAGGGAGA+CGG 0.506473 8.2:+11650127 None:intergenic
GCAGGGAGGAGGGAGACGGC+GGG 0.511588 8.2:+11650131 None:intergenic
GGCGGGTGGAGGGTGGGATA+GGG 0.512182 8.2:+11650148 None:intergenic
TTCGTCGCCGTTGCCATCGG+TGG 0.514537 8.2:+11649523 None:intergenic
TTCGATTCAGGTTGTGCCGG+TGG 0.516571 8.2:+11649604 None:intergenic
TGAAACTATGAGAATGGAGA+TGG 0.519805 8.2:-11649383 MS.gene041480:CDS
GTAATCTCAAAGCCACTCAC+TGG 0.525271 8.2:-11650041 MS.gene041480:CDS
ACCGATGGCAACGGCGACGA+AGG 0.529373 8.2:-11649521 MS.gene041480:CDS
CGAAGGGATTGGGGAACAAG+AGG 0.531063 8.2:-11649504 MS.gene041480:CDS
AGCGACTTCTTGCCAGTGAG+TGG 0.532762 8.2:+11650029 None:intergenic
TCGACTCCTACCGTGACAAA+TGG 0.536305 8.2:-11650080 MS.gene041480:CDS
ATTGGTGGTGGTTTCAGTGG+TGG 0.539540 8.2:-11649667 MS.gene041480:CDS
GCTGTTGTTATTGCTGTCAT+CGG 0.544640 8.2:+11649291 None:intergenic
AGCGGGGAGAGCTAGAGGGA+GGG 0.546314 8.2:+11650176 None:intergenic
AGCAGGGAGGAGGGAGACGG+CGG 0.547257 8.2:+11650130 None:intergenic
TGTTCAATGCCGTCACAAGA+TGG 0.547819 8.2:-11649959 MS.gene041480:CDS
TTGTATAAGAACGGTTTCGG+TGG 0.552376 8.2:-11649694 MS.gene041480:CDS
CTTATGGATTCCATGGAGAA+AGG 0.553692 8.2:-11649847 MS.gene041480:CDS
TGAATCTCAACAGCGAATTG+TGG 0.554265 8.2:-11649335 MS.gene041480:CDS
CAACGGCGACGAAGGGATTG+GGG 0.556588 8.2:-11649513 MS.gene041480:CDS
GTGGAGCGGGGAGAGCTAGA+GGG 0.556650 8.2:+11650172 None:intergenic
GGAATTGGTGGTGGTTTCAG+TGG 0.556771 8.2:-11649670 MS.gene041480:CDS
TTCCAGATTCAATTCGGCGT+GGG 0.557065 8.2:-11649881 MS.gene041480:CDS
GTTGAACATTATGCTTGTTG+TGG 0.561595 8.2:+11649229 None:intergenic
CCGATGGCAACGGCGACGAA+GGG 0.564638 8.2:-11649520 MS.gene041480:CDS
AATTGTGGAGGCATTTGCTA+AGG 0.565358 8.2:-11649320 MS.gene041480:CDS
AATTTCGATTCAGGTTGTGC+CGG 0.570295 8.2:+11649601 None:intergenic
AAAAGAAGATGGAGATGGCG+AGG 0.571525 8.2:-11649411 MS.gene041480:CDS
GAAGCTTCTCCATCTTGTGA+CGG 0.577882 8.2:+11649950 None:intergenic
ATTTAGGATTAGGTATCCAC+CGG 0.578430 8.2:-11649620 MS.gene041480:CDS
CCATACTCCACCGATGGCAA+CGG 0.592096 8.2:-11649530 MS.gene041480:CDS
AAATGGTACTCTCTTGGCCG+CGG 0.594791 8.2:-11650063 MS.gene041480:CDS
GAAGGGATTGGGGAACAAGA+GGG 0.597432 8.2:-11649503 MS.gene041480:CDS
GCCGAATTGAATCTGGAATG+AGG 0.606212 8.2:+11649886 None:intergenic
AGGAGAAGGACCTTTCTCCA+TGG 0.610673 8.2:+11649837 None:intergenic
AAAGAAGATGGAGATGGCGA+GGG 0.614159 8.2:-11649410 MS.gene041480:CDS
GAGAGCTAATGTTTCTTCGG+GGG 0.619903 8.2:+11650104 None:intergenic
ATCTCAACAGCGAATTGTGG+AGG 0.620844 8.2:-11649332 MS.gene041480:CDS
AGAGTACCATTTGTCACGGT+AGG 0.626402 8.2:+11650074 None:intergenic
ATTCCAGATTCAATTCGGCG+TGG 0.627728 8.2:-11649882 MS.gene041480:CDS
GAACTACCATACTCCACCGA+TGG 0.636162 8.2:-11649536 MS.gene041480:CDS
GGAGCAAAAGAAGATGGAGA+TGG 0.642155 8.2:-11649416 MS.gene041480:CDS
CAAGAGAGTACCATTTGTCA+CGG 0.645825 8.2:+11650070 None:intergenic
TGAGAGCTAATGTTTCTTCG+GGG 0.655287 8.2:+11650103 None:intergenic
GAGTGGCTTTGAGATTACCG+CGG 0.712719 8.2:+11650046 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATCAATAAGTTGTATAAGAA+CGG - chr8.2:11649771-11649790 MS.gene041480:CDS 20.0%
! GATGGAATTCTCTTATTAAT+AGG + chr8.2:11650224-11650243 None:intergenic 25.0%
! GTATCTGCAATTAAATTGTT+GGG - chr8.2:11650017-11650036 MS.gene041480:CDS 25.0%
! TGTATCTGCAATTAAATTGT+TGG - chr8.2:11650016-11650035 MS.gene041480:CDS 25.0%
! TTAGATATCAAAAACAGTCA+TGG - chr8.2:11649732-11649751 MS.gene041480:CDS 25.0%
!! TCATTGTTTTCAGATTTAAC+AGG + chr8.2:11649660-11649679 None:intergenic 25.0%
AAGTTGTATAAGAACGGTTT+CGG - chr8.2:11649777-11649796 MS.gene041480:CDS 30.0%
CAATTAAATTGTTGGGTGAT+GGG - chr8.2:11650024-11650043 MS.gene041480:CDS 30.0%
TCAGAAGAAAATTTCGATTC+AGG + chr8.2:11649885-11649904 None:intergenic 30.0%
! TTTTCAGATTTAACAGGAGA+AGG + chr8.2:11649654-11649673 None:intergenic 30.0%
ATGAGAGCTAATGTTTCTTC+GGG + chr8.2:11649375-11649394 None:intergenic 35.0%
CTTTAAGCTTATGGATTCCA+TGG - chr8.2:11649620-11649639 MS.gene041480:CDS 35.0%
GATGAGAGCTAATGTTTCTT+CGG + chr8.2:11649376-11649395 None:intergenic 35.0%
GCAATTAAATTGTTGGGTGA+TGG - chr8.2:11650023-11650042 MS.gene041480:CDS 35.0%
GGAGATTGAAACTATGAGAA+TGG - chr8.2:11650085-11650104 MS.gene041480:CDS 35.0%
TCCTCATTCCAGATTCAATT+CGG - chr8.2:11649587-11649606 MS.gene041480:CDS 35.0%
TCTGATTCAGATTAGGGTTA+GGG + chr8.2:11649920-11649939 None:intergenic 35.0%
TGAAACTATGAGAATGGAGA+TGG - chr8.2:11650091-11650110 MS.gene041480:CDS 35.0%
TTCTGATTCAGATTAGGGTT+AGG + chr8.2:11649921-11649940 None:intergenic 35.0%
! ATTTAGGATTAGGTATCCAC+CGG - chr8.2:11649854-11649873 MS.gene041480:CDS 35.0%
!! GGTAGTTCTGATTCAGATTA+GGG + chr8.2:11649926-11649945 None:intergenic 35.0%
!! TGGTAGTTCTGATTCAGATT+AGG + chr8.2:11649927-11649946 None:intergenic 35.0%
CTTATGGATTCCATGGAGAA+AGG - chr8.2:11649627-11649646 MS.gene041480:CDS 40.0%
GAGAATGGAGCAAAAGAAGA+TGG - chr8.2:11650052-11650071 MS.gene041480:CDS 40.0%
GCAGATACAATCTCAGTCAA+TGG + chr8.2:11650005-11650024 None:intergenic 40.0%
GTGGGTTCACTTTAAGCTTA+TGG - chr8.2:11649611-11649630 MS.gene041480:CDS 40.0%
TGAATCTCAACAGCGAATTG+TGG - chr8.2:11650139-11650158 MS.gene041480:CDS 40.0%
TGAGAGCTAATGTTTCTTCG+GGG + chr8.2:11649374-11649393 None:intergenic 40.0%
TTGTATAAGAACGGTTTCGG+TGG - chr8.2:11649780-11649799 MS.gene041480:CDS 40.0%
! CATTGAACAGGAGTTTTCGA+CGG + chr8.2:11649504-11649523 None:intergenic 40.0%
! GCTGTTGTTATTGCTGTCAT+CGG + chr8.2:11650186-11650205 None:intergenic 40.0%
! TTGGTGGAGGATTTAGGATT+AGG - chr8.2:11649844-11649863 MS.gene041480:CDS 40.0%
! TTTTCGACGGAGTAACGTTA+GGG + chr8.2:11649491-11649510 None:intergenic 40.0%
!! AATTGTGGAGGCATTTGCTA+AGG - chr8.2:11650154-11650173 MS.gene041480:CDS 40.0%
!! AATTTCGATTCAGGTTGTGC+CGG + chr8.2:11649876-11649895 None:intergenic 40.0%
!! CAAGAGAGTACCATTTGTCA+CGG + chr8.2:11649407-11649426 None:intergenic 40.0%
AAAAGAAGATGGAGATGGCG+AGG - chr8.2:11650063-11650082 MS.gene041480:CDS 45.0%
AAAGAAGATGGAGATGGCGA+GGG - chr8.2:11650064-11650083 MS.gene041480:CDS 45.0%
ATCTCAACAGCGAATTGTGG+AGG - chr8.2:11650142-11650161 MS.gene041480:CDS 45.0%
ATTCCAGATTCAATTCGGCG+TGG - chr8.2:11649592-11649611 MS.gene041480:CDS 45.0%
CGTGACAAATGGTACTCTCT+TGG - chr8.2:11649405-11649424 MS.gene041480:CDS 45.0%
GAAGCTTCTCCATCTTGTGA+CGG + chr8.2:11649527-11649546 None:intergenic 45.0%
GAGAGCTAATGTTTCTTCGG+GGG + chr8.2:11649373-11649392 None:intergenic 45.0%
GGAGCAAAAGAAGATGGAGA+TGG - chr8.2:11650058-11650077 MS.gene041480:CDS 45.0%
GTAATCTCAAAGCCACTCAC+TGG - chr8.2:11649433-11649452 MS.gene041480:CDS 45.0%
GTCACAAGATGGAGAAGCTT+CGG - chr8.2:11649526-11649545 MS.gene041480:CDS 45.0%
TATAAGAACGGTTTCGGTGG+CGG - chr8.2:11649783-11649802 MS.gene041480:CDS 45.0%
TGTTCAATGCCGTCACAAGA+TGG - chr8.2:11649515-11649534 MS.gene041480:CDS 45.0%
TTCCAGATTCAATTCGGCGT+GGG - chr8.2:11649593-11649612 MS.gene041480:CDS 45.0%
! AGAGTACCATTTGTCACGGT+AGG + chr8.2:11649403-11649422 None:intergenic 45.0%
! ATCTTGTGACGGCATTGAAC+AGG + chr8.2:11649516-11649535 None:intergenic 45.0%
! GCCGAATTGAATCTGGAATG+AGG + chr8.2:11649591-11649610 None:intergenic 45.0%
! GTTTTCGACGGAGTAACGTT+AGG + chr8.2:11649492-11649511 None:intergenic 45.0%
!! ATGGTGTTGGTGGAGGATTT+AGG - chr8.2:11649838-11649857 MS.gene041480:CDS 45.0%
AAATGGTACTCTCTTGGCCG+CGG - chr8.2:11649411-11649430 MS.gene041480:CDS 50.0%
AACCCACGCCGAATTGAATC+TGG + chr8.2:11649598-11649617 None:intergenic 50.0%
AGGAGAAGGACCTTTCTCCA+TGG + chr8.2:11649640-11649659 None:intergenic 50.0%
GAACTACCATACTCCACCGA+TGG - chr8.2:11649938-11649957 MS.gene041480:CDS 50.0%
GAAGGGATTGGGGAACAAGA+GGG - chr8.2:11649971-11649990 MS.gene041480:CDS 50.0%
TCGACTCCTACCGTGACAAA+TGG - chr8.2:11649394-11649413 MS.gene041480:CDS 50.0%
!! ATTGGTGGTGGTTTCAGTGG+TGG - chr8.2:11649807-11649826 MS.gene041480:CDS 50.0%
!! GAGTGGCTTTGAGATTACCG+CGG + chr8.2:11649431-11649450 None:intergenic 50.0%
!! GGAATTGGTGGTGGTTTCAG+TGG - chr8.2:11649804-11649823 MS.gene041480:CDS 50.0%
!! GGGTGATGGGTTTGTGAGAA+TGG - chr8.2:11650037-11650056 MS.gene041480:CDS 50.0%
!! TTCAGTGGTGGTGGTGGTAA+TGG - chr8.2:11649819-11649838 MS.gene041480:CDS 50.0%
AGCGACTTCTTGCCAGTGAG+TGG + chr8.2:11649448-11649467 None:intergenic 55.0%
AGGAGTGGTGGTTGAAGGAG+GGG + chr8.2:11649247-11649266 None:intergenic 55.0%
CCATACTCCACCGATGGCAA+CGG - chr8.2:11649944-11649963 MS.gene041480:CDS 55.0%
CGAAGGGATTGGGGAACAAG+AGG - chr8.2:11649970-11649989 MS.gene041480:CDS 55.0%
GAGGAGTGGTGGTTGAAGGA+GGG + chr8.2:11649248-11649267 None:intergenic 55.0%
!! AACGGTTTCGGTGGCGGAAT+TGG - chr8.2:11649789-11649808 MS.gene041480:CDS 55.0%
!! GGTGGTAATGGTGTTGGTGG+AGG - chr8.2:11649831-11649850 MS.gene041480:CDS 55.0%
!! GGTGGTGGTAATGGTGTTGG+TGG - chr8.2:11649828-11649847 MS.gene041480:CDS 55.0%
!! GGTGGTGGTGGTAATGGTGT+TGG - chr8.2:11649825-11649844 MS.gene041480:CDS 55.0%
!! TTCGATTCAGGTTGTGCCGG+TGG + chr8.2:11649873-11649892 None:intergenic 55.0%
ATCGGAGAGAGGAGGAGGAG+TGG + chr8.2:11649262-11649281 None:intergenic 60.0%
CAACGGCGACGAAGGGATTG+GGG - chr8.2:11649961-11649980 MS.gene041480:CDS 60.0%
CCGTTGCCATCGGTGGAGTA+TGG + chr8.2:11649947-11649966 None:intergenic 60.0%
GCAACGGCGACGAAGGGATT+GGG - chr8.2:11649960-11649979 MS.gene041480:CDS 60.0%
GGAGGAGGAGTGGTGGTTGA+AGG + chr8.2:11649252-11649271 None:intergenic 60.0%
GGAGGAGTGGTGGTTGAAGG+AGG + chr8.2:11649249-11649268 None:intergenic 60.0%
GTTTCTTCGGGGGACCAGCA+GGG + chr8.2:11649363-11649382 None:intergenic 60.0%
TGTTTCTTCGGGGGACCAGC+AGG + chr8.2:11649364-11649383 None:intergenic 60.0%
! GGTGGTGGTTTCAGTGGTGG+TGG - chr8.2:11649810-11649829 MS.gene041480:CDS 60.0%
!! GGTGGTTTCAGTGGTGGTGG+TGG - chr8.2:11649813-11649832 MS.gene041480:CDS 60.0%
!! GGTTTCGGTGGCGGAATTGG+TGG - chr8.2:11649792-11649811 MS.gene041480:CDS 60.0%
!! TTCGGTGGCGGAATTGGTGG+TGG - chr8.2:11649795-11649814 MS.gene041480:CDS 60.0%
ACCAGCAGGGAGGAGGGAGA+CGG + chr8.2:11649350-11649369 None:intergenic 65.0%
ACCGATGGCAACGGCGACGA+AGG - chr8.2:11649953-11649972 MS.gene041480:CDS 65.0%
AGCGGGGAGAGCTAGAGGGA+GGG + chr8.2:11649301-11649320 None:intergenic 65.0%
AGTGGAGCGGGGAGAGCTAG+AGG + chr8.2:11649306-11649325 None:intergenic 65.0%
CCCTTCGTCGCCGTTGCCAT+CGG + chr8.2:11649957-11649976 None:intergenic 65.0%
CCGATGGCAACGGCGACGAA+GGG - chr8.2:11649954-11649973 MS.gene041480:CDS 65.0%
GAGAGCTAGAGGGAGGGGGA+CGG + chr8.2:11649295-11649314 None:intergenic 65.0%
GGAGAGAGGAGGAGGAGTGG+TGG + chr8.2:11649259-11649278 None:intergenic 65.0%
GGCAACGGCGACGAAGGGAT+TGG - chr8.2:11649959-11649978 MS.gene041480:CDS 65.0%
GGGTGGGATAGGGAGTGGAG+CGG + chr8.2:11649319-11649338 None:intergenic 65.0%
GGTGGGATAGGGAGTGGAGC+GGG + chr8.2:11649318-11649337 None:intergenic 65.0%
GTGGAGCGGGGAGAGCTAGA+GGG + chr8.2:11649305-11649324 None:intergenic 65.0%
GTGGAGGGTGGGATAGGGAG+TGG + chr8.2:11649324-11649343 None:intergenic 65.0%
GTGGGATAGGGAGTGGAGCG+GGG + chr8.2:11649317-11649336 None:intergenic 65.0%
TTCGTCGCCGTTGCCATCGG+TGG + chr8.2:11649954-11649973 None:intergenic 65.0%
AGCAGGGAGGAGGGAGACGG+CGG + chr8.2:11649347-11649366 None:intergenic 70.0%
AGCTAGAGGGAGGGGGACGG+CGG + chr8.2:11649292-11649311 None:intergenic 70.0%
CGGGGAGAGCTAGAGGGAGG+GGG + chr8.2:11649299-11649318 None:intergenic 70.0%
GAGCGGGGAGAGCTAGAGGG+AGG + chr8.2:11649302-11649321 None:intergenic 70.0%
GCGGGGAGAGCTAGAGGGAG+GGG + chr8.2:11649300-11649319 None:intergenic 70.0%
GGCGGGTGGAGGGTGGGATA+GGG + chr8.2:11649329-11649348 None:intergenic 70.0%
GGGGGATCGGAGAGAGGAGG+AGG + chr8.2:11649267-11649286 None:intergenic 70.0%
GTGGGGGGATCGGAGAGAGG+AGG + chr8.2:11649270-11649289 None:intergenic 70.0%
TCTTCGGGGGACCAGCAGGG+AGG + chr8.2:11649360-11649379 None:intergenic 70.0%
AGAGGGAGGGGGACGGCGGT+GGG + chr8.2:11649288-11649307 None:intergenic 75.0%
AGGAGGGAGACGGCGGGTGG+AGG + chr8.2:11649340-11649359 None:intergenic 75.0%
CGGCGGGTGGAGGGTGGGAT+AGG + chr8.2:11649330-11649349 None:intergenic 75.0%
CGGGGGACCAGCAGGGAGGA+GGG + chr8.2:11649356-11649375 None:intergenic 75.0%
GCAGGGAGGAGGGAGACGGC+GGG + chr8.2:11649346-11649365 None:intergenic 75.0%
GCCGTCTCCCTCCTCCCTGC+TGG - chr8.2:11649346-11649365 MS.gene041480:CDS 75.0%
GCGGTGGGGGGATCGGAGAG+AGG + chr8.2:11649273-11649292 None:intergenic 75.0%
GGAGACGGCGGGTGGAGGGT+GGG + chr8.2:11649335-11649354 None:intergenic 75.0%
GGAGGGAGACGGCGGGTGGA+GGG + chr8.2:11649339-11649358 None:intergenic 75.0%
TAGAGGGAGGGGGACGGCGG+TGG + chr8.2:11649289-11649308 None:intergenic 75.0%
TCGGGGGACCAGCAGGGAGG+AGG + chr8.2:11649357-11649376 None:intergenic 75.0%
! AGGGAGGGGGACGGCGGTGG+GGG + chr8.2:11649286-11649305 None:intergenic 80.0%
! GAGGGAGGGGGACGGCGGTG+GGG + chr8.2:11649287-11649306 None:intergenic 80.0%
! GGGAGACGGCGGGTGGAGGG+TGG + chr8.2:11649336-11649355 None:intergenic 80.0%
! GGGAGGAGGGAGACGGCGGG+TGG + chr8.2:11649343-11649362 None:intergenic 80.0%
! GGGGACGGCGGTGGGGGGAT+CGG + chr8.2:11649280-11649299 None:intergenic 80.0%
! GGGAGGGGGACGGCGGTGGG+GGG + chr8.2:11649285-11649304 None:intergenic 85.0%


Chromosome Type Strat End Strand Name
chr8.2 gene 11649237 11650259 11649237 ID=MS.gene041480
chr8.2 mRNA 11649237 11650259 11649237 ID=MS.gene041480.t1;Parent=MS.gene041480
chr8.2 exon 11649237 11650259 11649237 ID=MS.gene041480.t1.exon1;Parent=MS.gene041480.t1
chr8.2 CDS 11649237 11650259 11649237 ID=cds.MS.gene041480.t1;Parent=MS.gene041480.t1
Gene Sequence

>MS.gene041480

ATGTCTTCCCCTCCTTCAACCACCACTCCTCCTCCTCTCTCCGATCCCCCCACCGCCGTCCCCCTCCCTCTAGCTCTCCCCGCTCCACTCCCTATCCCACCCTCCACCCGCCGTCTCCCTCCTCCCTGCTGGTCCCCCGAAGAAACATTAGCTCTCATCGACTCCTACCGTGACAAATGGTACTCTCTTGGCCGCGGTAATCTCAAAGCCACTCACTGGCAAGAAGTCGCTGACGCTGTTTCAAATCGTTGCCCTAACGTTACTCCGTCGAAAACTCCTGTTCAATGCCGTCACAAGATGGAGAAGCTTCGGAAACGTTATCGTACTGAGATTCAACGTGCTCGCTCGCTTCCTCATTCCAGATTCAATTCGGCGTGGGTTCACTTTAAGCTTATGGATTCCATGGAGAAAGGTCCTTCTCCTGTTAAATCTGAAAACAATGATTCTGATAGCGCTGATGAAGATGAAGATGAAGATCATGATCAAGATCTGTATTTAGATATCAAAAACAGTCATGGATCTAATACTAGAAGTATCAATAAGTTGTATAAGAACGGTTTCGGTGGCGGAATTGGTGGTGGTTTCAGTGGTGGTGGTGGTAATGGTGTTGGTGGAGGATTTAGGATTAGGTATCCACCGGCACAACCTGAATCGAAATTTTCTTCTGATCAGAAATATAACCCTAACCCTAATCTGAATCAGAACTACCATACTCCACCGATGGCAACGGCGACGAAGGGATTGGGGAACAAGAGGGAGAGAGATCCATTGACTGAGATTGTATCTGCAATTAAATTGTTGGGTGATGGGTTTGTGAGAATGGAGCAAAAGAAGATGGAGATGGCGAGGGAGATTGAAACTATGAGAATGGAGATGGAAATGAAGCGTACTGAGATGATTCTTGAATCTCAACAGCGAATTGTGGAGGCATTTGCTAAGGCAGTTTCCGATGACAGCAATAACAACAGCAACAAGACGATGAAGCCTATTAATAAGAGAATTCCATCACCACAACAAGCATAA
Protein sequence

>MS.gene041480.t1

MSSPPSTTTPPPLSDPPTAVPLPLALPAPLPIPPSTRRLPPPCWSPEETLALIDSYRDKWYSLGRGNLKATHWQEVADAVSNRCPNVTPSKTPVQCRHKMEKLRKRYRTEIQRARSLPHSRFNSAWVHFKLMDSMEKGPSPVKSENNDSDSADEDEDEDHDQDLYLDIKNSHGSNTRSINKLYKNGFGGGIGGGFSGGGGNGVGGGFRIRYPPAQPESKFSSDQKYNPNPNLNQNYHTPPMATATKGLGNKRERDPLTEIVSAIKLLGDGFVRMEQKKMEMAREIETMRMEMEMKRTEMILESQQRIVEAFAKAVSDDSNNNSNKTMKPINKRIPSPQQA