AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene041525

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene041525.t1 MTR_5g078270 38.305 295 169 5 19 302 17 309 4.59e-61 196
MS.gene041525.t1 MTR_0010s0290 34.576 295 173 6 19 302 39 324 5.09e-52 174
MS.gene041525.t1 MTR_0010s0320 33.115 305 180 7 9 302 2 293 1.74e-48 164
MS.gene041525.t1 MTR_1g054480 33.916 286 176 5 22 303 19 295 1.77e-44 153
MS.gene041525.t1 MTR_0010s0310 34.191 272 126 6 22 291 20 240 1.21e-34 126
MS.gene041525.t1 MTR_1g050480 31.276 243 122 5 12 253 8 206 1.31e-23 99.0
MS.gene041525.t1 MTR_2g012700 30.189 106 73 1 196 300 14 119 6.15e-13 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 92 sgRNAs with CRISPR-Local

Find 126 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGGAACGACGTACCATATTT+TGG 0.218433 8.2:-11183734 MS.gene041525:CDS
CATCTGATAATTGTAGAAAT+TGG 0.239747 8.2:+11183540 None:intergenic
CCGAGGTATGTTGATGTTAT+TGG 0.249280 8.2:-11183650 MS.gene041525:CDS
TTTAAGATCCTTACTTGTTC+AGG 0.287517 8.2:+11184103 None:intergenic
AGTCTTCAATCTTAGACTTT+TGG 0.299655 8.2:+11183143 None:intergenic
TATATGGTTGACTACAGATT+TGG 0.309041 8.2:+11183293 None:intergenic
TTCAATATGCGAATTGTTGA+TGG 0.313877 8.2:-11183761 MS.gene041525:CDS
TCCAATGGAGTTGACCCTTC+AGG 0.316164 8.2:-11184157 MS.gene041525:CDS
TTCCAATCAACGACAAATTC+AGG 0.326574 8.2:+11183965 None:intergenic
CTCCTGAATTTGTCGTTGAT+TGG 0.331151 8.2:-11183967 MS.gene041525:CDS
GGATAATGGAATCCAAAATA+TGG 0.331913 8.2:+11183722 None:intergenic
ATTTCCAGCCGGATCTTTGA+TGG 0.339598 8.2:+11183913 None:intergenic
ATATGGTTGACTACAGATTT+GGG 0.342902 8.2:+11183294 None:intergenic
CTCCAATGGAACTCAATGTT+AGG 0.348995 8.2:-11183089 MS.gene041525:CDS
CTCGGATTGACTTGAAGGTT+TGG 0.372952 8.2:+11183668 None:intergenic
GGCCGACCAGAACATAGTTT+TGG 0.383031 8.2:-11183262 MS.gene041525:CDS
CATACCTCGGATTGACTTGA+AGG 0.392440 8.2:+11183663 None:intergenic
CATAACATTGCAAACTCAAA+AGG 0.394081 8.2:+11183602 None:intergenic
GGTCGGCCACAAAAGGTATA+TGG 0.404072 8.2:+11183277 None:intergenic
GGGAGGAAAAGACCACCGTC+AGG 0.421856 8.2:+11183623 None:intergenic
CAACAATTCGCATATTGAAC+TGG 0.435687 8.2:+11183765 None:intergenic
TCACTTCGGCCCTTAGCAAC+TGG 0.436275 8.2:+11183443 None:intergenic
CCAATGGAGTTGACCCTTCA+GGG 0.452496 8.2:-11184156 MS.gene041525:CDS
CACAGTACCTTGCAATAATC+CGG 0.462888 8.2:+11183837 None:intergenic
TCCCTACTCCACTTTCCAAC+GGG 0.468155 8.2:-11184569 MS.gene041525:intron
TGTAACCAGGCCAGTTGCTA+AGG 0.483856 8.2:-11183453 MS.gene041525:CDS
TGCTAAGGGCCGAAGTGACT+TGG 0.484950 8.2:-11183438 MS.gene041525:intron
ACCCTAACATTGAGTTCCAT+TGG 0.485090 8.2:+11183087 None:intergenic
CATCAACCAAAACTATGTTC+TGG 0.486969 8.2:+11183256 None:intergenic
TGAATTTGTCGTTGATTGGA+AGG 0.487666 8.2:-11183963 MS.gene041525:CDS
CAATTTACATAGGGAGTGGC+TGG 0.490021 8.2:-11183176 MS.gene041525:CDS
ATGTTCTGGTCGGCCACAAA+AGG 0.492846 8.2:+11183270 None:intergenic
ATGTTAGGGTTCTCCGTCGC+AGG 0.496923 8.2:-11183074 MS.gene041525:CDS
CCCTGAAGGGTCAACTCCAT+TGG 0.500515 8.2:+11184156 None:intergenic
TCCAATGGAACTCAATGTTA+GGG 0.501785 8.2:-11183088 MS.gene041525:CDS
TGTCGGATCCATCAAAGATC+CGG 0.506141 8.2:-11183921 MS.gene041525:CDS
ATAATTGTAGAAATTGGATA+AGG 0.509582 8.2:+11183546 None:intergenic
ATGCGAATTGTTGATGGAGA+AGG 0.509644 8.2:-11183755 MS.gene041525:CDS
TTGACTTACCCGTTGGAAAG+TGG 0.513614 8.2:+11184561 None:intergenic
ATTCAGGAGGGATTTCAATA+CGG 0.516187 8.2:+11183981 None:intergenic
TTATGGATGGAAGAACTTAA+CGG 0.519426 8.2:-11183584 MS.gene041525:CDS
AAAGTGGTTGGTGCCCCTGA+AGG 0.522492 8.2:+11184142 None:intergenic
TCGGCCCTTAGCAACTGGCC+TGG 0.525594 8.2:+11183448 None:intergenic
TCGGAAGAAGCAATTTACAT+AGG 0.532988 8.2:-11183186 MS.gene041525:CDS
ATAACATTGCAAACTCAAAA+GGG 0.541595 8.2:+11183603 None:intergenic
CGGAAGAAGCAATTTACATA+GGG 0.544470 8.2:-11183185 MS.gene041525:CDS
GTCCACTGAAAGTCAAAAGC+AGG 0.551689 8.2:+11183482 None:intergenic
GTATCCATCGATACTTTGCA+TGG 0.555610 8.2:+11183213 None:intergenic
CGGATTATTGCAAGGTACTG+TGG 0.558040 8.2:-11183836 MS.gene041525:CDS
TAGTCAAGAATTACCTTCTG+CGG 0.559691 8.2:+11183803 None:intergenic
TGCGAATTGTTGATGGAGAA+GGG 0.561259 8.2:-11183754 MS.gene041525:CDS
GTCCCTACTCCACTTTCCAA+CGG 0.564413 8.2:-11184570 MS.gene041525:CDS
GGAGGAAAAGACCACCGTCA+GGG 0.566388 8.2:+11183624 None:intergenic
GAAGGTAATTCTTGACTACA+AGG 0.567645 8.2:-11183798 MS.gene041525:CDS
GAGGAAAAGACCACCGTCAG+GGG 0.568166 8.2:+11183625 None:intergenic
AACTGGCCTGGTTACATCCA+AGG 0.574011 8.2:+11183460 None:intergenic
ATATACCATGGTATCAAAAG+TGG 0.579646 8.2:+11184126 None:intergenic
GGATCCATCAAAGATCCGGC+TGG 0.581763 8.2:-11183917 MS.gene041525:CDS
AAGTGGTTGGTGCCCCTGAA+GGG 0.581816 8.2:+11184143 None:intergenic
CTAACATTGAGTTCCATTGG+AGG 0.582212 8.2:+11183090 None:intergenic
AAAAGTCTAAGATTGAAGAC+TGG 0.584520 8.2:-11183141 MS.gene041525:CDS
ACATGTTCATCAGAGGCGGC+CGG 0.584533 8.2:-11183856 MS.gene041525:CDS
TTGTCTGACATGTTCATCAG+AGG 0.585532 8.2:-11183863 MS.gene041525:CDS
AGGAAAAGACCACCGTCAGG+GGG 0.587565 8.2:+11183626 None:intergenic
AGATGAACATAATGAGACTT+CGG 0.590070 8.2:-11183522 MS.gene041525:CDS
TGGACTGGACAATCCTCCAA+TGG 0.590635 8.2:-11183103 MS.gene041525:CDS
GAAGCAATTTACATAGGGAG+TGG 0.592040 8.2:-11183180 MS.gene041525:CDS
TCTGACATGTTCATCAGAGG+CGG 0.593190 8.2:-11183860 MS.gene041525:CDS
ACCCGTTGGAAAGTGGAGTA+GGG 0.595752 8.2:+11184568 None:intergenic
TGGTTTCAATGAACCGCAGA+AGG 0.596257 8.2:-11183816 MS.gene041525:CDS
AGTGGACCTTGGATGTAACC+AGG 0.598459 8.2:-11183466 MS.gene041525:CDS
ATTCCCATGCAAAGTATCGA+TGG 0.599282 8.2:-11183217 MS.gene041525:CDS
TGAGTTTGCAATGTTATGGA+TGG 0.599799 8.2:-11183597 MS.gene041525:CDS
AGCATCGCTGTACAAAATGT+CGG 0.608796 8.2:-11183938 MS.gene041525:CDS
TATCCATCGATACTTTGCAT+GGG 0.609143 8.2:+11183214 None:intergenic
ACCATGGTATCAAAAGTGGT+TGG 0.609782 8.2:+11184130 None:intergenic
TACCCGTTGGAAAGTGGAGT+AGG 0.614917 8.2:+11184567 None:intergenic
AACCAAAACTATGTTCTGGT+CGG 0.619760 8.2:+11183260 None:intergenic
GTGTACTAACCAAGTCACTT+CGG 0.625729 8.2:+11183429 None:intergenic
CCAATAACATCAACATACCT+CGG 0.630235 8.2:+11183650 None:intergenic
GTAACCAGGCCAGTTGCTAA+GGG 0.632798 8.2:-11183452 MS.gene041525:CDS
TGCTTCAGTGAGACCTGCGA+CGG 0.645760 8.2:+11183061 None:intergenic
GAGGCGGCCGGATTATTGCA+AGG 0.655116 8.2:-11183844 MS.gene041525:CDS
CAATCAACGACAAATTCAGG+AGG 0.655933 8.2:+11183968 None:intergenic
CAATGGAGTTGACCCTTCAG+GGG 0.660593 8.2:-11184155 MS.gene041525:CDS
CAAACCTTCAAGTCAATCCG+AGG 0.662887 8.2:-11183667 MS.gene041525:CDS
TATGGTTGACTACAGATTTG+GGG 0.664603 8.2:+11183295 None:intergenic
TACTTGTTCAGGATATACCA+TGG 0.667959 8.2:+11184114 None:intergenic
AATCAACGACAAATTCAGGA+GGG 0.674016 8.2:+11183969 None:intergenic
GGAAAGTGGAGTAGGGACCA+TGG 0.684071 8.2:+11184575 None:intergenic
AGTATCGATGGATACAACAT+CGG 0.685684 8.2:-11183205 MS.gene041525:CDS
ACATTGCAAACTCAAAAGGG+AGG 0.696354 8.2:+11183606 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAAAATATATTTTGATGTA+GGG + chr8.2:11183124-11183143 None:intergenic 10.0%
!! ATCATTAGAAAATTCAAAAA+AGG + chr8.2:11183180-11183199 None:intergenic 15.0%
!! TTCAAAAAAGGAAATTATAT+TGG + chr8.2:11183168-11183187 None:intergenic 15.0%
!!! CAAAAAATATATTTTGATGT+AGG + chr8.2:11183125-11183144 None:intergenic 15.0%
!!! CTACATCAAAATATATTTTT+TGG - chr8.2:11183123-11183142 MS.gene041525:CDS 15.0%
!! ATAATTGTAGAAATTGGATA+AGG + chr8.2:11184095-11184114 None:intergenic 20.0%
!! ATATGTTTGTTTAAATATGC+AGG + chr8.2:11184306-11184325 None:intergenic 20.0%
!! TAGCAAAATAATGATTAGAT+GGG + chr8.2:11183281-11183300 None:intergenic 20.0%
!!! ATTTTTTTTAGACAATCCAA+TGG - chr8.2:11183466-11183485 MS.gene041525:CDS 20.0%
!!! CATTTGTTTTCATATATACT+AGG - chr8.2:11183216-11183235 MS.gene041525:CDS 20.0%
! ATAACATTGCAAACTCAAAA+GGG + chr8.2:11184038-11184057 None:intergenic 25.0%
! CATCTGATAATTGTAGAAAT+TGG + chr8.2:11184101-11184120 None:intergenic 25.0%
! GAAAACAAATGTAAAGAATG+TGG + chr8.2:11183207-11183226 None:intergenic 25.0%
! GTAGCAAAATAATGATTAGA+TGG + chr8.2:11183282-11183301 None:intergenic 25.0%
!! ATCTTAGCATGAATATTTTC+AGG + chr8.2:11183940-11183959 None:intergenic 25.0%
!! TTGTTTTCATATATACTAGG+AGG - chr8.2:11183219-11183238 MS.gene041525:CDS 25.0%
!!! CATGAATATTTTCAGGATAA+TGG + chr8.2:11183933-11183952 None:intergenic 25.0%
AGATGAACATAATGAGACTT+CGG - chr8.2:11184116-11184135 MS.gene041525:intron 30.0%
AGTGATTTATGTTCCATATG+TGG - chr8.2:11183367-11183386 MS.gene041525:intron 30.0%
ATATACCATGGTATCAAAAG+TGG + chr8.2:11183515-11183534 None:intergenic 30.0%
ATATGGTTGACTACAGATTT+GGG + chr8.2:11184347-11184366 None:intergenic 30.0%
CATAACATTGCAAACTCAAA+AGG + chr8.2:11184039-11184058 None:intergenic 30.0%
GTGATTTATGTTCCATATGT+GGG - chr8.2:11183368-11183387 MS.gene041525:intron 30.0%
TATATGGTTGACTACAGATT+TGG + chr8.2:11184348-11184367 None:intergenic 30.0%
TTATGGATGGAAGAACTTAA+CGG - chr8.2:11184054-11184073 MS.gene041525:intron 30.0%
TTCAATATGCGAATTGTTGA+TGG - chr8.2:11183877-11183896 MS.gene041525:CDS 30.0%
! AAAAGTCTAAGATTGAAGAC+TGG - chr8.2:11184497-11184516 MS.gene041525:intron 30.0%
! AGTCTTCAATCTTAGACTTT+TGG + chr8.2:11184498-11184517 None:intergenic 30.0%
! CAACACCATATCTAATCTTT+TGG - chr8.2:11183097-11183116 MS.gene041525:CDS 30.0%
! TAAGTAGTATAGTTGATGCT+TGG - chr8.2:11183393-11183412 MS.gene041525:intron 30.0%
! TTTAAGATCCTTACTTGTTC+AGG + chr8.2:11183538-11183557 None:intergenic 30.0%
!! GGATAATGGAATCCAAAATA+TGG + chr8.2:11183919-11183938 None:intergenic 30.0%
!!! CTTTTGAGTTTGCAATGTTA+TGG - chr8.2:11184037-11184056 MS.gene041525:intron 30.0%
AACCAAAACTATGTTCTGGT+CGG + chr8.2:11184381-11184400 None:intergenic 35.0%
AATCAACGACAAATTCAGGA+GGG + chr8.2:11183672-11183691 None:intergenic 35.0%
AGGGACCAAAAGATTAGATA+TGG + chr8.2:11183105-11183124 None:intergenic 35.0%
ATACTACTTACACCCACATA+TGG + chr8.2:11183383-11183402 None:intergenic 35.0%
ATCCCAAAAAAATTTCCAGC+CGG + chr8.2:11183739-11183758 None:intergenic 35.0%
ATTCAGGAGGGATTTCAATA+CGG + chr8.2:11183660-11183679 None:intergenic 35.0%
CAACAATTCGCATATTGAAC+TGG + chr8.2:11183876-11183895 None:intergenic 35.0%
CATCAACCAAAACTATGTTC+TGG + chr8.2:11184385-11184404 None:intergenic 35.0%
CCAATAACATCAACATACCT+CGG + chr8.2:11183991-11184010 None:intergenic 35.0%
CGGAAGAAGCAATTTACATA+GGG - chr8.2:11184453-11184472 MS.gene041525:intron 35.0%
GAAGGTAATTCTTGACTACA+AGG - chr8.2:11183840-11183859 MS.gene041525:CDS 35.0%
TACTTGTTCAGGATATACCA+TGG + chr8.2:11183527-11183546 None:intergenic 35.0%
TAGTCAAGAATTACCTTCTG+CGG + chr8.2:11183838-11183857 None:intergenic 35.0%
TATCCATCGATACTTTGCAT+GGG + chr8.2:11184427-11184446 None:intergenic 35.0%
TATGGTTGACTACAGATTTG+GGG + chr8.2:11184346-11184365 None:intergenic 35.0%
TCCAATGGAACTCAATGTTA+GGG - chr8.2:11184550-11184569 MS.gene041525:intron 35.0%
TCGGAAGAAGCAATTTACAT+AGG - chr8.2:11184452-11184471 MS.gene041525:intron 35.0%
TGAGTTTGCAATGTTATGGA+TGG - chr8.2:11184041-11184060 MS.gene041525:intron 35.0%
TGGTATATCCTGAACAAGTA+AGG - chr8.2:11183527-11183546 MS.gene041525:CDS 35.0%
TTCCAATCAACGACAAATTC+AGG + chr8.2:11183676-11183695 None:intergenic 35.0%
! AGTCAACCATATACCTTTTG+TGG - chr8.2:11184355-11184374 MS.gene041525:intron 35.0%
! TGAATTTGTCGTTGATTGGA+AGG - chr8.2:11183675-11183694 MS.gene041525:CDS 35.0%
!! AGTATCGATGGATACAACAT+CGG - chr8.2:11184433-11184452 MS.gene041525:intron 35.0%
!!! ATCCGGCTGGAAATTTTTTT+GGG - chr8.2:11183734-11183753 MS.gene041525:CDS 35.0%
ACATTGCAAACTCAAAAGGG+AGG + chr8.2:11184035-11184054 None:intergenic 40.0%
ACCATGGTATCAAAAGTGGT+TGG + chr8.2:11183511-11183530 None:intergenic 40.0%
ACCCTAACATTGAGTTCCAT+TGG + chr8.2:11184554-11184573 None:intergenic 40.0%
AGCATCGCTGTACAAAATGT+CGG - chr8.2:11183700-11183719 MS.gene041525:CDS 40.0%
CAATCAACGACAAATTCAGG+AGG + chr8.2:11183673-11183692 None:intergenic 40.0%
CACAGTACCTTGCAATAATC+CGG + chr8.2:11183804-11183823 None:intergenic 40.0%
CCGAGGTATGTTGATGTTAT+TGG - chr8.2:11183988-11184007 MS.gene041525:intron 40.0%
CTAACATTGAGTTCCATTGG+AGG + chr8.2:11184551-11184570 None:intergenic 40.0%
CTCCAATGGAACTCAATGTT+AGG - chr8.2:11184549-11184568 MS.gene041525:intron 40.0%
CTCCTGAATTTGTCGTTGAT+TGG - chr8.2:11183671-11183690 MS.gene041525:CDS 40.0%
GAAGCAATTTACATAGGGAG+TGG - chr8.2:11184458-11184477 MS.gene041525:intron 40.0%
GTATCCATCGATACTTTGCA+TGG + chr8.2:11184428-11184447 None:intergenic 40.0%
GTGTACTAACCAAGTCACTT+CGG + chr8.2:11184212-11184231 None:intergenic 40.0%
TTGTCTGACATGTTCATCAG+AGG - chr8.2:11183775-11183794 MS.gene041525:CDS 40.0%
! ACTGGTGACATGCTTTTCTT+TGG - chr8.2:11184515-11184534 MS.gene041525:intron 40.0%
! ATGCGAATTGTTGATGGAGA+AGG - chr8.2:11183883-11183902 MS.gene041525:CDS 40.0%
! TGACATGCTTTTCTTTGGAC+TGG - chr8.2:11184520-11184539 MS.gene041525:intron 40.0%
! TGCGAATTGTTGATGGAGAA+GGG - chr8.2:11183884-11183903 MS.gene041525:CDS 40.0%
!! ACCAACCACTTTTGATACCA+TGG - chr8.2:11183507-11183526 MS.gene041525:CDS 40.0%
!! ATTCCCATGCAAAGTATCGA+TGG - chr8.2:11184421-11184440 MS.gene041525:intron 40.0%
!!! GATCCGGCTGGAAATTTTTT+TGG - chr8.2:11183733-11183752 MS.gene041525:CDS 40.0%
!!! TTCCTGCTTTTGACTTTCAG+TGG - chr8.2:11184154-11184173 MS.gene041525:CDS 40.0%
!!! TTTTGACTTTCAGTGGACCT+TGG - chr8.2:11184161-11184180 MS.gene041525:CDS 40.0%
ATTTCCAGCCGGATCTTTGA+TGG + chr8.2:11183728-11183747 None:intergenic 45.0%
CAAACCTTCAAGTCAATCCG+AGG - chr8.2:11183971-11183990 MS.gene041525:CDS 45.0%
CAATTTACATAGGGAGTGGC+TGG - chr8.2:11184462-11184481 MS.gene041525:intron 45.0%
GTCCACTGAAAGTCAAAAGC+AGG + chr8.2:11184159-11184178 None:intergenic 45.0%
TCTGACATGTTCATCAGAGG+CGG - chr8.2:11183778-11183797 MS.gene041525:CDS 45.0%
TGGTTTCAATGAACCGCAGA+AGG - chr8.2:11183822-11183841 MS.gene041525:CDS 45.0%
TGTCGGATCCATCAAAGATC+CGG - chr8.2:11183717-11183736 MS.gene041525:CDS 45.0%
TTGACTTACCCGTTGGAAAG+TGG + chr8.2:11183080-11183099 None:intergenic 45.0%
! GGGAACGACGTACCATATTT+TGG - chr8.2:11183904-11183923 MS.gene041525:CDS 45.0%
!! CATACCTCGGATTGACTTGA+AGG + chr8.2:11183978-11183997 None:intergenic 45.0%
!! CGGATTATTGCAAGGTACTG+TGG - chr8.2:11183802-11183821 MS.gene041525:CDS 45.0%
!! CTCGGATTGACTTGAAGGTT+TGG + chr8.2:11183973-11183992 None:intergenic 45.0%
!! TATGGTGTTGACTTACCCGT+TGG + chr8.2:11183087-11183106 None:intergenic 45.0%
!! TCTTATATAAATTATAATAT+AGG - chr8.2:11183633-11183652 MS.gene041525:CDS 5.0%
!!! ATATAAAAAATAGATTTTAA+TGG + chr8.2:11184236-11184255 None:intergenic 5.0%
ACCCGTTGGAAAGTGGAGTA+GGG + chr8.2:11183073-11183092 None:intergenic 50.0%
AGTGGACCTTGGATGTAACC+AGG - chr8.2:11184172-11184191 MS.gene041525:intron 50.0%
ATGTTCTGGTCGGCCACAAA+AGG + chr8.2:11184371-11184390 None:intergenic 50.0%
CAATGGAGTTGACCCTTCAG+GGG - chr8.2:11183483-11183502 MS.gene041525:CDS 50.0%
CCAATGGAGTTGACCCTTCA+GGG - chr8.2:11183482-11183501 MS.gene041525:CDS 50.0%
GATGTTATTGGTCCCCCTGA+CGG - chr8.2:11184000-11184019 MS.gene041525:intron 50.0%
GTAACCAGGCCAGTTGCTAA+GGG - chr8.2:11184186-11184205 MS.gene041525:intron 50.0%
GTCCCTACTCCACTTTCCAA+CGG - chr8.2:11183068-11183087 MS.gene041525:CDS 50.0%
TACCCGTTGGAAAGTGGAGT+AGG + chr8.2:11183074-11183093 None:intergenic 50.0%
TCCAATGGAGTTGACCCTTC+AGG - chr8.2:11183481-11183500 MS.gene041525:CDS 50.0%
TCCCTACTCCACTTTCCAAC+GGG - chr8.2:11183069-11183088 MS.gene041525:CDS 50.0%
TGTAACCAGGCCAGTTGCTA+AGG - chr8.2:11184185-11184204 MS.gene041525:intron 50.0%
! AACTGGCCTGGTTACATCCA+AGG + chr8.2:11184181-11184200 None:intergenic 50.0%
! GGCCGACCAGAACATAGTTT+TGG - chr8.2:11184376-11184395 MS.gene041525:intron 50.0%
! GGTCGGCCACAAAAGGTATA+TGG + chr8.2:11184364-11184383 None:intergenic 50.0%
! TGGACTGGACAATCCTCCAA+TGG - chr8.2:11184535-11184554 MS.gene041525:intron 50.0%
ACATGTTCATCAGAGGCGGC+CGG - chr8.2:11183782-11183801 MS.gene041525:CDS 55.0%
AGGAAAAGACCACCGTCAGG+GGG + chr8.2:11184015-11184034 None:intergenic 55.0%
ATGTTAGGGTTCTCCGTCGC+AGG - chr8.2:11184564-11184583 MS.gene041525:intron 55.0%
CCCTGAAGGGTCAACTCCAT+TGG + chr8.2:11183485-11183504 None:intergenic 55.0%
GAGGAAAAGACCACCGTCAG+GGG + chr8.2:11184016-11184035 None:intergenic 55.0%
GGAGGAAAAGACCACCGTCA+GGG + chr8.2:11184017-11184036 None:intergenic 55.0%
GGATCCATCAAAGATCCGGC+TGG - chr8.2:11183721-11183740 MS.gene041525:CDS 55.0%
TCACTTCGGCCCTTAGCAAC+TGG + chr8.2:11184198-11184217 None:intergenic 55.0%
TGCTAAGGGCCGAAGTGACT+TGG - chr8.2:11184200-11184219 MS.gene041525:intron 55.0%
! AAAGTGGTTGGTGCCCCTGA+AGG + chr8.2:11183499-11183518 None:intergenic 55.0%
! AAGTGGTTGGTGCCCCTGAA+GGG + chr8.2:11183498-11183517 None:intergenic 55.0%
GAGGCGGCCGGATTATTGCA+AGG - chr8.2:11183794-11183813 MS.gene041525:CDS 60.0%
GGGAGGAAAAGACCACCGTC+AGG + chr8.2:11184018-11184037 None:intergenic 60.0%
GTTATTGGTCCCCCTGACGG+TGG - chr8.2:11184003-11184022 MS.gene041525:intron 60.0%
TCGGCCCTTAGCAACTGGCC+TGG + chr8.2:11184193-11184212 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr8.2 gene 11183065 11184595 11183065 ID=MS.gene041525
chr8.2 mRNA 11183065 11184595 11183065 ID=MS.gene041525.t1;Parent=MS.gene041525
chr8.2 exon 11184570 11184595 11184570 ID=MS.gene041525.t1.exon1;Parent=MS.gene041525.t1
chr8.2 CDS 11184570 11184595 11184570 ID=cds.MS.gene041525.t1;Parent=MS.gene041525.t1
chr8.2 exon 11184117 11184183 11184117 ID=MS.gene041525.t1.exon2;Parent=MS.gene041525.t1
chr8.2 CDS 11184117 11184183 11184117 ID=cds.MS.gene041525.t1;Parent=MS.gene041525.t1
chr8.2 exon 11183439 11184005 11183439 ID=MS.gene041525.t1.exon3;Parent=MS.gene041525.t1
chr8.2 CDS 11183439 11184005 11183439 ID=cds.MS.gene041525.t1;Parent=MS.gene041525.t1
chr8.2 exon 11183065 11183322 11183065 ID=MS.gene041525.t1.exon4;Parent=MS.gene041525.t1
chr8.2 CDS 11183065 11183322 11183065 ID=cds.MS.gene041525.t1;Parent=MS.gene041525.t1
Gene Sequence

>MS.gene041525

ATGGTCCCTACTCCACTTTCCAACGGGTAAGTCAACACCATATCTAATCTTTTGGTCCCTACATCAAAATATATTTTTTGGCTTCTTCTCAGACTAAAATCCAATATAATTTCCTTTTTTGAATTTTCTAATGATCATTCCACATTCTTTACATTTGTTTTCATATATACTAGGAGGTAGTTTGAAGTATCAGATATGTGCATGTAAAGCTTTCCCATCTAATCATTATTTTGCTACTATAACACAATGAAAACTTTTTTTTATAAAACTCATTCATGCACGTATTATTTATATTTTGTCTTAGTGATTTATGTTCCATATGTGGGTGTAAGTAGTATAGTTGATGCTTGGTAAGATAGATACATTTTGATTTATTTAACGAAGCTAAATATTTTATTGTCATTTTTTTTAGACAATCCAATGGAGTTGACCCTTCAGGGGCACCAACCACTTTTGATACCATGGTATATCCTGAACAAGTAAGGATCTTAAATAATATCTATTAAAATTTCATCTTATTGTAAATGAAACTCACTTCGATTGTTGTTTGTTGATCTTTTTATTTGTATCTTATATAAATTATAATATAGGACCGTATTGAAATCCCTCCTGAATTTGTCGTTGATTGGAAGGATAGCATCGCTGTACAAAATGTCGGATCCATCAAAGATCCGGCTGGAAATTTTTTTGGGATTTATACTCGAACTATTTTGTCTGACATGTTCATCAGAGGCGGCCGGATTATTGCAAGGTACTGTGGTTTCAATGAACCGCAGAAGGTAATTCTTGACTACAAGGTTAATGATAACCAGTTCAATATGCGAATTGTTGATGGAGAAGGGAACGACGTACCATATTTTGGATTCCATTATCCTGAAAATATTCATGCTAAGATACTTGCTAATCCAAACCTTCAAGTCAATCCGAGGTATGTTGATGTTATTGGTCCCCCTGACGGTGGTCTTTTCCTCCCTTTTGAGTTTGCAATGTTATGGATGGAAGAACTTAACGGTGTCAATGACGACAGCCTTATCCAATTTCTACAATTATCAGATGAACATAATGAGACTTCGGAATCTGATGAAGATGTTCCTGCTTTTGACTTTCAGTGGACCTTGGATGTAACCAGGCCAGTTGCTAAGGGCCGAAGTGACTTGGTTAGTACACACCATTAAAATCTATTTTTTATATTTGAAGACTTATGTTGAATTATTTAAGTTTAATTTATATATAATTATCCTGCATATTTAAACAAACATATTTATTTTTGTAGTATTTCCCCAAATCTGTAGTCAACCATATACCTTTTGTGGCCGACCAGAACATAGTTTTGGTTGATGACAACACAAATGAGCGATTCCCATGCAAAGTATCGATGGATACAACATCGGAAGAAGCAATTTACATAGGGAGTGGCTGGTATGAATGTGCCAAAAGTCTAAGATTGAAGACTGGTGACATGCTTTTCTTTGGACTGGACAATCCTCCAATGGAACTCAATGTTAGGGTTCTCCGTCGCAGGTCTCACTGA
Protein sequence

>MS.gene041525.t1

MVPTPLSNGQSNGVDPSGAPTTFDTMVYPEQDRIEIPPEFVVDWKDSIAVQNVGSIKDPAGNFFGIYTRTILSDMFIRGGRIIARYCGFNEPQKVILDYKVNDNQFNMRIVDGEGNDVPYFGFHYPENIHAKILANPNLQVNPRYVDVIGPPDGGLFLPFEFAMLWMEELNGVNDDSLIQFLQLSDEHNETSESDEDVPAFDFQWTLDVTRPVAKGRSDLYFPKSVVNHIPFVADQNIVLVDDNTNERFPCKVSMDTTSEEAIYIGSGWYECAKSLRLKTGDMLFFGLDNPPMELNVRVLRRRSH