Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene041535.t1 | XP_003609635.2 | 96.6 | 1163 | 39 | 0 | 1 | 1163 | 1 | 1163 | 0.00E+00 | 2159.4 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene041535.t1 | Q6A332 | 47.0 | 1148 | 523 | 22 | 48 | 1163 | 39 | 1132 | 2.9e-237 | 823.5 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene041535.t1 | G7JKB2 | 96.6 | 1163 | 39 | 0 | 1 | 1163 | 1 | 1163 | 0.0e+00 | 2159.4 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene041535.t1 | TF | MYB-related |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene041535.t1 | MTR_4g119390 | 96.647 | 1163 | 39 | 0 | 1 | 1163 | 1 | 1163 | 0.0 | 2339 |
MS.gene041535.t1 | MTR_4g119390 | 93.823 | 1198 | 39 | 1 | 1 | 1163 | 1 | 1198 | 0.0 | 2320 |
MS.gene041535.t1 | MTR_1g083040 | 43.317 | 1212 | 561 | 34 | 1 | 1163 | 1 | 1135 | 0.0 | 797 |
MS.gene041535.t1 | MTR_1g083040 | 43.568 | 1205 | 555 | 36 | 1 | 1163 | 1 | 1122 | 0.0 | 796 |
MS.gene041535.t1 | MTR_1g083040 | 42.822 | 1212 | 556 | 35 | 1 | 1163 | 1 | 1124 | 0.0 | 777 |
MS.gene041535.t1 | MTR_1g083040 | 43.071 | 1205 | 550 | 37 | 1 | 1163 | 1 | 1111 | 0.0 | 776 |
MS.gene041535.t1 | MTR_1g083040 | 45.756 | 813 | 370 | 22 | 1 | 784 | 1 | 771 | 0.0 | 587 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene041535.t1 | AT3G21430 | 46.963 | 1169 | 532 | 23 | 28 | 1163 | 19 | 1132 | 0.0 | 921 |
MS.gene041535.t1 | AT3G21430 | 47.124 | 1165 | 532 | 23 | 28 | 1163 | 19 | 1128 | 0.0 | 920 |
MS.gene041535.t1 | AT3G21430 | 47.124 | 1165 | 532 | 23 | 28 | 1163 | 19 | 1128 | 0.0 | 920 |
MS.gene041535.t1 | AT3G05380 | 37.628 | 978 | 475 | 27 | 1 | 914 | 1 | 907 | 9.69e-156 | 493 |
MS.gene041535.t1 | AT3G05380 | 41.573 | 178 | 93 | 4 | 988 | 1163 | 884 | 1052 | 1.10e-29 | 128 |
MS.gene041535.t1 | AT3G05380 | 37.628 | 978 | 475 | 27 | 1 | 914 | 1 | 907 | 9.69e-156 | 493 |
MS.gene041535.t1 | AT3G05380 | 41.573 | 178 | 93 | 4 | 988 | 1163 | 884 | 1052 | 1.10e-29 | 128 |
MS.gene041535.t1 | AT3G05380 | 37.628 | 978 | 475 | 27 | 1 | 914 | 1 | 907 | 9.69e-156 | 493 |
MS.gene041535.t1 | AT3G05380 | 41.573 | 178 | 93 | 4 | 988 | 1163 | 884 | 1052 | 1.10e-29 | 128 |
MS.gene041535.t1 | AT3G05380 | 37.526 | 978 | 475 | 27 | 1 | 914 | 1 | 906 | 1.02e-155 | 493 |
MS.gene041535.t1 | AT3G05380 | 41.573 | 178 | 93 | 4 | 988 | 1163 | 883 | 1051 | 1.10e-29 | 128 |
MS.gene041535.t1 | AT3G05380 | 37.025 | 894 | 430 | 28 | 89 | 914 | 1 | 829 | 1.71e-129 | 421 |
MS.gene041535.t1 | AT3G05380 | 41.573 | 178 | 93 | 4 | 988 | 1163 | 806 | 974 | 1.02e-29 | 128 |
MS.gene041535.t1 | AT5G27610 | 40.878 | 433 | 212 | 11 | 386 | 784 | 288 | 710 | 9.13e-71 | 256 |
MS.gene041535.t1 | AT5G27610 | 47.893 | 261 | 99 | 9 | 1 | 257 | 1 | 228 | 1.21e-53 | 204 |
MS.gene041535.t1 | AT5G27610 | 35.227 | 176 | 106 | 1 | 988 | 1163 | 803 | 970 | 1.40e-22 | 105 |
Find 247 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CCAGTGTCAGGGTTTGTTTC+TGG | 0.086747 | 8.2:+11046925 | None:intergenic |
CCGAGTTATCTCCGTATTTC+TGG | 0.088103 | 8.2:+11040256 | None:intergenic |
TTTCACCATATTTAGGTTTC+TGG | 0.112732 | 8.2:+11043620 | None:intergenic |
TGCAAAATCTGTGTCAAAAT+TGG | 0.152697 | 8.2:+11048275 | None:intergenic |
TATGAAGCTTACCGTGAATA+TGG | 0.199391 | 8.2:-11055477 | MS.gene041535:CDS |
CACCTTGCCAAAATGTTTAA+TGG | 0.203085 | 8.2:+11038866 | None:intergenic |
CTAGGGATTTCACCATATTT+AGG | 0.204552 | 8.2:+11043613 | None:intergenic |
TAGCAGCCCATTAAACATTT+TGG | 0.215940 | 8.2:-11038873 | MS.gene041535:CDS |
TTGCCAATAGAATATGAAAT+AGG | 0.224344 | 8.2:+11048860 | None:intergenic |
ACACGCTGCCCAACAATTAA+TGG | 0.227330 | 8.2:+11042260 | None:intergenic |
GGTAGATTCTTTGAACAAAA+TGG | 0.238242 | 8.2:+11037465 | None:intergenic |
TCATGAATCTCCCTTGTCTT+TGG | 0.253815 | 8.2:+11042224 | None:intergenic |
CAAGCATTTGAATGACTTAA+AGG | 0.264328 | 8.2:-11048346 | MS.gene041535:CDS |
TGGTACACAGCGACCTTTAA+TGG | 0.271033 | 8.2:+11041295 | None:intergenic |
AAACCTTGATGAGTCTAAAA+TGG | 0.290911 | 8.2:-11045371 | MS.gene041535:CDS |
CTGGTATGCTCCCTCTGCTT+TGG | 0.301751 | 8.2:+11045282 | None:intergenic |
GGCCTCATGCTGTTCGAAAA+AGG | 0.303491 | 8.2:-11048895 | MS.gene041535:CDS |
TTCTGTATCTCACCATATAT+TGG | 0.303861 | 8.2:+11037444 | None:intergenic |
GTGATATCATACCAGGAATT+AGG | 0.306104 | 8.2:-11048916 | MS.gene041535:intron |
GGCCATAGATTCTATTACTT+TGG | 0.309553 | 8.2:-11038918 | MS.gene041535:CDS |
GTCCCTATTTCATATTCTAT+TGG | 0.311459 | 8.2:-11048863 | MS.gene041535:CDS |
TCTACTGCTTTGTTGTCATT+TGG | 0.311783 | 8.2:+11051179 | None:intergenic |
AGCTACACTGCTCATGATTC+AGG | 0.314415 | 8.2:-11038762 | MS.gene041535:intron |
GGTGATAATGCAGATTATTC+TGG | 0.316155 | 8.2:-11048474 | MS.gene041535:CDS |
AGCCAAAGTAATAGAATCTA+TGG | 0.320570 | 8.2:+11038916 | None:intergenic |
GACAGACCATTATAGTATTA+TGG | 0.321669 | 8.2:-11053306 | MS.gene041535:intron |
TGGTATGCTCCCTCTGCTTT+GGG | 0.323032 | 8.2:+11045283 | None:intergenic |
CAGTTTGACCAGCATGAACT+TGG | 0.326153 | 8.2:-11042161 | MS.gene041535:CDS |
GAAGCCCATTGCAAATTTAG+AGG | 0.326174 | 8.2:-11039979 | MS.gene041535:CDS |
ATCAAAAGAAGCTGATATAT+TGG | 0.334194 | 8.2:-11040495 | MS.gene041535:CDS |
GGAAGGCATACCTGCTGATT+TGG | 0.335570 | 8.2:-11042288 | MS.gene041535:CDS |
TCTTGTTGTATCATTGGTTT+TGG | 0.337366 | 8.2:+11043462 | None:intergenic |
CGGAAACAGTTCAAGAAAAT+CGG | 0.338674 | 8.2:-11045338 | MS.gene041535:CDS |
GAGGGCACTGCTTCTGTGGT+TGG | 0.350015 | 8.2:-11053344 | MS.gene041535:CDS |
TTGCTCTTGCAGTACGTAAT+AGG | 0.355212 | 8.2:-11055189 | MS.gene041535:CDS |
CATTGTGCATAAGCTCTCTA+AGG | 0.355553 | 8.2:+11041381 | None:intergenic |
GGTAGTTCTGAGTTGAGTTT+AGG | 0.359133 | 8.2:-11048507 | MS.gene041535:CDS |
AGCTTGAACAACCATGGTTC+GGG | 0.363741 | 8.2:+11039851 | None:intergenic |
CCACTCAATACGAGTCAATC+TGG | 0.366185 | 8.2:+11043125 | None:intergenic |
TCATTCCAGAAACCTAAATA+TGG | 0.366857 | 8.2:-11043625 | MS.gene041535:CDS |
GAGAAGTCAGATGCCATTAA+AGG | 0.366873 | 8.2:-11041308 | MS.gene041535:CDS |
GACTTTGAGATATAGATTCT+TGG | 0.367314 | 8.2:+11039910 | None:intergenic |
TCAAAGAATCTACCAATATA+TGG | 0.367899 | 8.2:-11037456 | MS.gene041535:CDS |
TTCTTACCATAATACTATAA+TGG | 0.367930 | 8.2:+11053300 | None:intergenic |
TGCTATGCAGAAGAGAAAAT+TGG | 0.368184 | 8.2:-11055547 | MS.gene041535:intron |
AGTTGTATCAACCATTTGTT+TGG | 0.371204 | 8.2:+11048796 | None:intergenic |
TCATTCTAGCAGGAGTAATA+TGG | 0.372331 | 8.2:+11041411 | None:intergenic |
AGGGCACTGCTTCTGTGGTT+GGG | 0.372492 | 8.2:-11053343 | MS.gene041535:CDS |
GTGAAGAAGTCCACGGTTAA+AGG | 0.375088 | 8.2:-11043672 | MS.gene041535:CDS |
TTGTTGAAGAAAAGGCATTC+TGG | 0.378476 | 8.2:-11051095 | MS.gene041535:intron |
ACCTTGCCAAAATGTTTAAT+GGG | 0.382506 | 8.2:+11038867 | None:intergenic |
AGAAAATTGGCCGATATGTT+AGG | 0.389878 | 8.2:-11055534 | MS.gene041535:CDS |
TGCCAATAGAATATGAAATA+GGG | 0.392930 | 8.2:+11048861 | None:intergenic |
GTATGATCTTGTTGTATCAT+TGG | 0.395885 | 8.2:+11043456 | None:intergenic |
AGCCTTCTGCCTATTCTTGC+CGG | 0.398604 | 8.2:+11055856 | None:intergenic |
TATCATAAGAAATCAGATAT+TGG | 0.401370 | 8.2:-11037412 | MS.gene041535:CDS |
TCCAATCTTTCCCATATTCA+CGG | 0.405262 | 8.2:+11055466 | None:intergenic |
TGTGTCAAAATTGGATTTGA+AGG | 0.405494 | 8.2:+11048284 | None:intergenic |
CATTATGCTGAAGTTCTTGC+TGG | 0.413232 | 8.2:-11042317 | MS.gene041535:CDS |
AATACCTGTGCAACATCAGC+TGG | 0.413425 | 8.2:+11037513 | None:intergenic |
GCCTGTCATTGTTGAAGAAA+AGG | 0.415958 | 8.2:-11051103 | MS.gene041535:CDS |
CATGTTAAATCAGGAATAGT+TGG | 0.422787 | 8.2:-11048561 | MS.gene041535:CDS |
CTCTGTTTATTTGACCGACT+TGG | 0.423203 | 8.2:+11043511 | None:intergenic |
GAGATAATATTGGAAGAGTA+AGG | 0.427648 | 8.2:-11048428 | MS.gene041535:CDS |
AATGACAACAAAGCAGTAGA+TGG | 0.428914 | 8.2:-11051176 | MS.gene041535:CDS |
CAGCAAATACCGGCAAGAAT+AGG | 0.429426 | 8.2:-11055865 | MS.gene041535:CDS |
CTACTCTTATGCAGTTCTCT+TGG | 0.430013 | 8.2:-11042419 | MS.gene041535:intron |
AAGCCTTGTACACTAAGAAC+AGG | 0.430030 | 8.2:-11055150 | MS.gene041535:CDS |
CGGAACAGTAGAGATAATAT+TGG | 0.430192 | 8.2:-11048438 | MS.gene041535:CDS |
ATAAATGCCTTACCAGTGTC+AGG | 0.432931 | 8.2:+11046913 | None:intergenic |
TGGCCCAGCCATTAATTGTT+GGG | 0.439743 | 8.2:-11042268 | MS.gene041535:CDS |
CTTCTAGGAACTTGTGTTGT+CGG | 0.445079 | 8.2:-11040313 | MS.gene041535:intron |
TAGCTTGAACAACCATGGTT+CGG | 0.445922 | 8.2:+11039850 | None:intergenic |
ATAAATCCATCGCATCATAC+TGG | 0.446266 | 8.2:-11043401 | MS.gene041535:CDS |
AATCTAGAAGTGTAAATAAG+AGG | 0.448249 | 8.2:-11055931 | MS.gene041535:CDS |
AAATCACAAGCAAAAGTTGC+GGG | 0.448716 | 8.2:-11040581 | MS.gene041535:CDS |
CATACTGGTTCTCATTTAAG+TGG | 0.450622 | 8.2:-11045078 | MS.gene041535:CDS |
TTGGCCCAGCCATTAATTGT+TGG | 0.451045 | 8.2:-11042269 | MS.gene041535:CDS |
TATTTGAAGACATATTTCCT+AGG | 0.454212 | 8.2:+11043595 | None:intergenic |
GCCTCCAGTGGAACCGATGA+TGG | 0.455246 | 8.2:-11048321 | MS.gene041535:CDS |
AACATAAACTTAATCAGTAC+CGG | 0.455370 | 8.2:-11042355 | MS.gene041535:CDS |
TGAACAAAATGGCTGCAAAC+TGG | 0.455570 | 8.2:+11037476 | None:intergenic |
GAATAGTACGGAACGTCATA+AGG | 0.457036 | 8.2:-11043376 | MS.gene041535:intron |
TACCCTGTTCTTAGTGTACA+AGG | 0.457694 | 8.2:+11055147 | None:intergenic |
ATTAACTGAAGCAAATGAAC+AGG | 0.462633 | 8.2:-11040184 | MS.gene041535:intron |
GAACTGAAGCACATGAATGA+TGG | 0.462918 | 8.2:-11040291 | MS.gene041535:CDS |
AAGAGTAAGGAATCAGGAAA+AGG | 0.465011 | 8.2:-11048415 | MS.gene041535:CDS |
TATTGGAAGAGTAAGGAATC+AGG | 0.465078 | 8.2:-11048421 | MS.gene041535:CDS |
TTAGAGAGCTTATGCACAAT+GGG | 0.466746 | 8.2:-11041379 | MS.gene041535:CDS |
AATGTGATCTGACAGATTCC+CGG | 0.468252 | 8.2:+11042336 | None:intergenic |
AAGTGTGAGGTCTTCTTACA+AGG | 0.469533 | 8.2:-11048244 | MS.gene041535:CDS |
CTGTTGACCATTGTAGATAC+CGG | 0.470249 | 8.2:-11042187 | MS.gene041535:CDS |
TATCGTTGACAAAGCAGAAA+GGG | 0.470257 | 8.2:-11043574 | MS.gene041535:CDS |
ATGAAGCTTACCGTGAATAT+GGG | 0.470402 | 8.2:-11055476 | MS.gene041535:CDS |
ACCGTGAATATGGGAAAGAT+TGG | 0.471794 | 8.2:-11055467 | MS.gene041535:CDS |
TTTAGAGGATCCTGGTGGTC+AGG | 0.471928 | 8.2:-11039964 | MS.gene041535:CDS |
ATCTATGGCCAGAAAATTTG+TGG | 0.473141 | 8.2:+11038931 | None:intergenic |
AGAGTAAGGAATCAGGAAAA+GGG | 0.476289 | 8.2:-11048414 | MS.gene041535:CDS |
CATTCCGTTGCATCAGATGA+TGG | 0.476385 | 8.2:-11051128 | MS.gene041535:CDS |
AATTGGATTTGAAGGAACTC+TGG | 0.478314 | 8.2:+11048292 | None:intergenic |
TCCAGAGGGCACTGCTTCTG+TGG | 0.478808 | 8.2:-11053348 | MS.gene041535:CDS |
ACCACAGAAGCAGTGCCCTC+TGG | 0.479339 | 8.2:+11053347 | None:intergenic |
ACGTAATAGGACCATGGAAA+TGG | 0.480725 | 8.2:-11055176 | MS.gene041535:CDS |
CCATTGTGGTCCTAACATAT+CGG | 0.481285 | 8.2:+11055524 | None:intergenic |
GTTGTGGCAAGCTGAGCAAT+TGG | 0.482009 | 8.2:+11039932 | None:intergenic |
TTTCCATCTTTCTTCTAGGT+CGG | 0.482426 | 8.2:+11043487 | None:intergenic |
TTGAGTGGGGAGTCATTAGA+AGG | 0.484128 | 8.2:-11043110 | MS.gene041535:intron |
ATTCTGGAAAATTAATTCAT+CGG | 0.486527 | 8.2:-11048458 | MS.gene041535:CDS |
CAATGAGATATGAGTTCTGA+GGG | 0.491306 | 8.2:+11038788 | None:intergenic |
TTCTATTGGCAAAGATAATG+AGG | 0.491767 | 8.2:-11048849 | MS.gene041535:CDS |
TCCTGCTTACAGCACTAAGC+TGG | 0.492772 | 8.2:+11045263 | None:intergenic |
AGGTTCTCATTCATTCTAGC+AGG | 0.493474 | 8.2:+11041401 | None:intergenic |
CGCAAATCTGACATGGATGA+AGG | 0.495520 | 8.2:-11048528 | MS.gene041535:CDS |
ATCAGCAGGTATGCCTTCCT+TGG | 0.495822 | 8.2:+11042292 | None:intergenic |
CCATCACCCAATCTGAAAAG+TGG | 0.497047 | 8.2:-11048680 | MS.gene041535:CDS |
ATGGCATCTGACTTCTCACT+TGG | 0.499265 | 8.2:+11041314 | None:intergenic |
AATTGCTCTGAAAATCTTCG+TGG | 0.500777 | 8.2:+11042392 | None:intergenic |
AGTTTGACCAGCATGAACTT+GGG | 0.504601 | 8.2:-11042160 | MS.gene041535:CDS |
AACTGAAGCACATGAATGAT+GGG | 0.505603 | 8.2:-11040290 | MS.gene041535:CDS |
GACTCGTGCTCTAGAAAAGA+AGG | 0.506028 | 8.2:-11040459 | MS.gene041535:intron |
GGATCCTCTAAATTTGCAAT+GGG | 0.506309 | 8.2:+11039975 | None:intergenic |
GTTAGGACCACAATGGAGTA+AGG | 0.506745 | 8.2:-11055517 | MS.gene041535:CDS |
CTAAATATGGTGAAATCCCT+AGG | 0.507305 | 8.2:-11043612 | MS.gene041535:CDS |
GATAAAGATGCAGCAAATAC+CGG | 0.508252 | 8.2:-11055875 | MS.gene041535:CDS |
GCTGCCCAACAATTAATGGC+TGG | 0.508774 | 8.2:+11042264 | None:intergenic |
AAGTGGTTCCCAGAAAATCA+AGG | 0.509560 | 8.2:-11045061 | MS.gene041535:intron |
AATGGCTGGGCCAAATCAGC+AGG | 0.510693 | 8.2:+11042278 | None:intergenic |
GGAAACAGTTCAAGAAAATC+GGG | 0.510715 | 8.2:-11045337 | MS.gene041535:CDS |
GAGATATAGATTCTTGGTTG+TGG | 0.512907 | 8.2:+11039916 | None:intergenic |
GCGGGCAGTGAGATTTGTAA+TGG | 0.514341 | 8.2:-11040563 | MS.gene041535:CDS |
TTAAGTTCATCATCTTGTAC+AGG | 0.517590 | 8.2:+11038842 | None:intergenic |
AATGAGAACTTGATGCTGAT+TGG | 0.518355 | 8.2:+11040540 | None:intergenic |
TTTCAGAAAGACAGAAAGCA+AGG | 0.519639 | 8.2:-11039023 | MS.gene041535:CDS |
CTGCCCAACAATTAATGGCT+GGG | 0.521000 | 8.2:+11042265 | None:intergenic |
TCCATCATCGGTTCCACTGG+AGG | 0.521031 | 8.2:+11048320 | None:intergenic |
TCTAAAATGGAAACAGATAA+CGG | 0.522858 | 8.2:-11045358 | MS.gene041535:CDS |
ACCAGCTTAGTGCTGTAAGC+AGG | 0.523976 | 8.2:-11045264 | MS.gene041535:CDS |
CAATCTGAAAAGTGGGAAGA+AGG | 0.524576 | 8.2:-11048672 | MS.gene041535:intron |
CAGAATGATGAAACACATAC+TGG | 0.524927 | 8.2:-11045093 | MS.gene041535:CDS |
GGCGATGGTGCACCTCTGAA+TGG | 0.528930 | 8.2:-11043230 | MS.gene041535:CDS |
ATACTTAGAACATGTTGGAC+TGG | 0.530255 | 8.2:-11043157 | MS.gene041535:CDS |
AGGCCGACCTAGAAGAAAGA+TGG | 0.530402 | 8.2:-11043490 | MS.gene041535:CDS |
TGGGGACAATATTGTGTGCT+CGG | 0.531755 | 8.2:+11041334 | None:intergenic |
ATTGCAAATTTAGAGGATCC+TGG | 0.532924 | 8.2:-11039972 | MS.gene041535:CDS |
TGATTGGAGTCGCTCAAGAA+AGG | 0.533822 | 8.2:+11040514 | None:intergenic |
GTACTGCTTACATGCATAGC+AGG | 0.536620 | 8.2:+11041272 | None:intergenic |
CAGATTGACTCGTATTGAGT+GGG | 0.537564 | 8.2:-11043124 | MS.gene041535:CDS |
ATAGTGCTATTGATTATCCA+TGG | 0.540206 | 8.2:-11043203 | MS.gene041535:CDS |
ATTTGAAGACATATTTCCTA+GGG | 0.540728 | 8.2:+11043596 | None:intergenic |
TTGAGTTTAGGAAGTACAGA+AGG | 0.542444 | 8.2:-11048495 | MS.gene041535:CDS |
GTTTGACCAGCATGAACTTG+GGG | 0.546671 | 8.2:-11042159 | MS.gene041535:CDS |
CTTCACATCAAACGCGGCGA+TGG | 0.547360 | 8.2:-11043245 | MS.gene041535:CDS |
CACTCAATACGAGTCAATCT+GGG | 0.548436 | 8.2:+11043126 | None:intergenic |
CATGGTTGTTCAAGCTACTC+AGG | 0.549504 | 8.2:-11039844 | MS.gene041535:intron |
GTATCAGAAAGCCAGAAATA+CGG | 0.550244 | 8.2:-11040267 | MS.gene041535:CDS |
TAGGCAGGACTCCAAACAAA+TGG | 0.551437 | 8.2:-11048807 | MS.gene041535:CDS |
AGGATCCTCTAAATTTGCAA+TGG | 0.551510 | 8.2:+11039974 | None:intergenic |
AGAATATGAAATAGGGACAC+GGG | 0.551820 | 8.2:+11048868 | None:intergenic |
GTTCTTGCTGGTACCAAGGA+AGG | 0.552113 | 8.2:-11042305 | MS.gene041535:CDS |
ATACCTGTGCAACATCAGCT+GGG | 0.552409 | 8.2:+11037514 | None:intergenic |
CAAGGCTTCTACCATTTCCA+TGG | 0.555139 | 8.2:+11055165 | None:intergenic |
AAACAAAATGCAGAAGTGTA+CGG | 0.559214 | 8.2:-11037550 | MS.gene041535:intron |
GAAGAGCTAGCCTGACCACC+AGG | 0.562935 | 8.2:+11039954 | None:intergenic |
CCAGAAATACGGAGATAACT+CGG | 0.563831 | 8.2:-11040256 | MS.gene041535:CDS |
AACTCTCTCTTTGAAAACCA+TGG | 0.566023 | 8.2:+11043186 | None:intergenic |
TCATTTGTGCAGTTCTGTGA+AGG | 0.566357 | 8.2:-11045394 | MS.gene041535:CDS |
GTAGAATACTTAGAACATGT+TGG | 0.571317 | 8.2:-11043162 | MS.gene041535:CDS |
CTTAGAGAGCTTATGCACAA+TGG | 0.573435 | 8.2:-11041380 | MS.gene041535:CDS |
TGGTGAGATACAGAAATGCA+TGG | 0.576778 | 8.2:-11037436 | MS.gene041535:CDS |
GACTTAAAGGAGGCCTCCAG+TGG | 0.577399 | 8.2:-11048333 | MS.gene041535:CDS |
TGAAGGAGTCTGAGCTAGGT+AGG | 0.577749 | 8.2:+11037381 | None:intergenic |
TGACCGCTTGCCTTTAACCG+TGG | 0.577890 | 8.2:+11043662 | None:intergenic |
AAATTCACCTTCTGAATACC+AGG | 0.578589 | 8.2:+11055830 | None:intergenic |
CATCACCCAATCTGAAAAGT+GGG | 0.578815 | 8.2:-11048679 | MS.gene041535:CDS |
TAGAGTCATCGACTGAAAGC+CGG | 0.581077 | 8.2:+11038963 | None:intergenic |
CATGCTGGTCAAACTGAACC+CGG | 0.582887 | 8.2:+11042168 | None:intergenic |
TGGCATCTGACTTCTCACTT+GGG | 0.583323 | 8.2:+11041315 | None:intergenic |
CCAGATTGACTCGTATTGAG+TGG | 0.583650 | 8.2:-11043125 | MS.gene041535:CDS |
AAGACAAGGGAGATTCATGA+TGG | 0.583960 | 8.2:-11042221 | MS.gene041535:CDS |
TGAAGTTCTTGCTGGTACCA+AGG | 0.587865 | 8.2:-11042309 | MS.gene041535:CDS |
ACAATGAGATATGAGTTCTG+AGG | 0.588292 | 8.2:+11038787 | None:intergenic |
TACTTAGAACATGTTGGACT+GGG | 0.589292 | 8.2:-11043156 | MS.gene041535:CDS |
TTGTCATTTGGCTTTCCCCG+TGG | 0.590049 | 8.2:+11051191 | None:intergenic |
GGCATACTTGTCTCTTCCAG+AGG | 0.594396 | 8.2:-11053363 | MS.gene041535:CDS |
AATAGGCAGAAGGCTAGTCC+TGG | 0.595746 | 8.2:-11055848 | MS.gene041535:CDS |
ATATCGTTGACAAAGCAGAA+AGG | 0.598224 | 8.2:-11043575 | MS.gene041535:CDS |
ATTCCTCCAGTATGATGCGA+TGG | 0.600268 | 8.2:+11043395 | None:intergenic |
ATGGTGTCTTATCAGAGACA+TGG | 0.600547 | 8.2:+11041430 | None:intergenic |
TGTTGACCATTGTAGATACC+GGG | 0.601453 | 8.2:-11042186 | MS.gene041535:CDS |
GGCTAGTCCTGGTATTCAGA+AGG | 0.601808 | 8.2:-11055837 | MS.gene041535:intron |
AAGCAAGGTTGAAAGAGTTG+AGG | 0.603856 | 8.2:-11039008 | MS.gene041535:CDS |
TCATCTGATGCAACGGAATG+TGG | 0.605010 | 8.2:+11051131 | None:intergenic |
GCAACCATCATCTGATGCAA+CGG | 0.606972 | 8.2:+11051124 | None:intergenic |
ATCATACTGGAGGAATAGTA+CGG | 0.608135 | 8.2:-11043388 | MS.gene041535:CDS |
TTGCTATTCATCCAAAGACA+AGG | 0.608201 | 8.2:-11042235 | MS.gene041535:CDS |
TGCTATTCATCCAAAGACAA+GGG | 0.608809 | 8.2:-11042234 | MS.gene041535:CDS |
CAGTTCAAGAAAATCGGGCA+AGG | 0.610014 | 8.2:-11045332 | MS.gene041535:CDS |
ATTCAACCCCAAGTTCATGC+TGG | 0.612807 | 8.2:+11042153 | None:intergenic |
CCAGAAACAAACCCTGACAC+TGG | 0.613482 | 8.2:-11046925 | MS.gene041535:intron |
TACCTGTGCAACATCAGCTG+GGG | 0.616593 | 8.2:+11037515 | None:intergenic |
AATTGCATTAGCATTATCAG+AGG | 0.618027 | 8.2:-11048759 | MS.gene041535:CDS |
TAGAATATGAAATAGGGACA+CGG | 0.618389 | 8.2:+11048867 | None:intergenic |
GGCATCTGACTTCTCACTTG+GGG | 0.618633 | 8.2:+11041316 | None:intergenic |
CAAATCACAAGCAAAAGTTG+CGG | 0.619381 | 8.2:-11040582 | MS.gene041535:CDS |
TCTATTGGCAAAGATAATGA+GGG | 0.622126 | 8.2:-11048848 | MS.gene041535:CDS |
TGGTGTCTTATCAGAGACAT+GGG | 0.624605 | 8.2:+11041431 | None:intergenic |
TACCGGCAAGAATAGGCAGA+AGG | 0.627607 | 8.2:-11055858 | MS.gene041535:CDS |
GGTGAGATACAGAAATGCAT+GGG | 0.628850 | 8.2:-11037435 | MS.gene041535:CDS |
ACTTGGGGTTGAATTTGTCA+TGG | 0.632591 | 8.2:-11042144 | MS.gene041535:intron |
TAAATGCCTTACCAGTGTCA+GGG | 0.634335 | 8.2:+11046914 | None:intergenic |
ATATGGGAAAGATTGGAAGA+AGG | 0.634909 | 8.2:-11055460 | MS.gene041535:intron |
AGATACTGCTCCCAAAGCAG+AGG | 0.637946 | 8.2:-11045293 | MS.gene041535:CDS |
TGGCTGCAAACTGGTGACAG+CGG | 0.639746 | 8.2:+11037485 | None:intergenic |
GATACTGCTCCCAAAGCAGA+GGG | 0.640638 | 8.2:-11045292 | MS.gene041535:CDS |
TACATCGTAGGTTACTGATG+AGG | 0.643727 | 8.2:-11043694 | MS.gene041535:intron |
ATCGTTGACAAAGCAGAAAG+GGG | 0.645016 | 8.2:-11043573 | MS.gene041535:CDS |
TCAGAGGCTTCACAGAGAGG+TGG | 0.645463 | 8.2:-11048743 | MS.gene041535:CDS |
CTGAGTAGCTTGAACAACCA+TGG | 0.645469 | 8.2:+11039845 | None:intergenic |
TAGAAGAAAAGCCCGAACCA+TGG | 0.646018 | 8.2:-11039862 | MS.gene041535:CDS |
AATCCATCGCATCATACTGG+AGG | 0.648435 | 8.2:-11043398 | MS.gene041535:CDS |
ACATAAACTTAATCAGTACC+GGG | 0.650723 | 8.2:-11042354 | MS.gene041535:CDS |
ACTGAACCCGGTATCTACAA+TGG | 0.651577 | 8.2:+11042180 | None:intergenic |
ACCTGTGCAACATCAGCTGG+GGG | 0.653849 | 8.2:+11037516 | None:intergenic |
TGCAGTACGTAATAGGACCA+TGG | 0.653882 | 8.2:-11055182 | MS.gene041535:CDS |
AGTGTGAGGTCTTCTTACAA+GGG | 0.653978 | 8.2:-11048243 | MS.gene041535:CDS |
GCATTTGAATGACTTAAAGG+AGG | 0.659228 | 8.2:-11048343 | MS.gene041535:CDS |
TGGCAGGGAGGAAGTGACAG+TGG | 0.659370 | 8.2:-11051263 | MS.gene041535:intron |
GAAGTTTCGCAAATCTGACA+TGG | 0.660309 | 8.2:-11048535 | MS.gene041535:CDS |
GAGGTTCTCTAATATTCGTG+AGG | 0.661488 | 8.2:-11055912 | MS.gene041535:CDS |
AGTCCACGGTTAAAGGCAAG+CGG | 0.668120 | 8.2:-11043665 | MS.gene041535:CDS |
GCATACTTGTCTCTTCCAGA+GGG | 0.673500 | 8.2:-11053362 | MS.gene041535:CDS |
AGCACTATAAAACCATTCAG+AGG | 0.676314 | 8.2:+11043218 | None:intergenic |
TTATCAGAGGCTTCACAGAG+AGG | 0.676499 | 8.2:-11048746 | MS.gene041535:CDS |
AGCCTTGTACACTAAGAACA+GGG | 0.682265 | 8.2:-11055149 | MS.gene041535:intron |
CCGATATGTTAGGACCACAA+TGG | 0.682677 | 8.2:-11055524 | MS.gene041535:CDS |
AGCTCCGCCTTACTCCATTG+TGG | 0.688593 | 8.2:+11055510 | None:intergenic |
CTGCTTACATGCATAGCAGG+TGG | 0.693143 | 8.2:+11041275 | None:intergenic |
TGATGAGGTGAAGAAGTCCA+CGG | 0.695386 | 8.2:-11043679 | MS.gene041535:CDS |
GTCTGTCTTCACATCAAACG+CGG | 0.697708 | 8.2:-11043251 | MS.gene041535:CDS |
AGATTGACTCGTATTGAGTG+GGG | 0.698291 | 8.2:-11043123 | MS.gene041535:CDS |
AGGACCACAATGGAGTAAGG+CGG | 0.703268 | 8.2:-11055514 | MS.gene041535:CDS |
ACTGAAGCACATGAATGATG+GGG | 0.703661 | 8.2:-11040289 | MS.gene041535:CDS |
GGGCTTCAATGACAAAACTG+AGG | 0.705815 | 8.2:+11039995 | None:intergenic |
GAATATGAAATAGGGACACG+GGG | 0.712256 | 8.2:+11048869 | None:intergenic |
CAAGTCGGTCAAATAAACAG+AGG | 0.727061 | 8.2:-11043510 | MS.gene041535:CDS |
GCAAATTTAGAGGATCCTGG+TGG | 0.760362 | 8.2:-11039969 | MS.gene041535:CDS |
AATGAGATATGAGTTCTGAG+GGG | 0.770793 | 8.2:+11038789 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8.2 | gene | 11037395 | 11055969 | 11037395 | ID=MS.gene041535 |
chr8.2 | mRNA | 11037395 | 11055969 | 11037395 | ID=MS.gene041535.t1;Parent=MS.gene041535 |
chr8.2 | exon | 11055838 | 11055969 | 11055838 | ID=MS.gene041535.t1.exon1;Parent=MS.gene041535.t1 |
chr8.2 | CDS | 11055838 | 11055969 | 11055838 | ID=cds.MS.gene041535.t1;Parent=MS.gene041535.t1 |
chr8.2 | exon | 11055461 | 11055559 | 11055461 | ID=MS.gene041535.t1.exon2;Parent=MS.gene041535.t1 |
chr8.2 | CDS | 11055461 | 11055559 | 11055461 | ID=cds.MS.gene041535.t1;Parent=MS.gene041535.t1 |
chr8.2 | exon | 11055150 | 11055212 | 11055150 | ID=MS.gene041535.t1.exon3;Parent=MS.gene041535.t1 |
chr8.2 | CDS | 11055150 | 11055212 | 11055150 | ID=cds.MS.gene041535.t1;Parent=MS.gene041535.t1 |
chr8.2 | exon | 11053307 | 11053384 | 11053307 | ID=MS.gene041535.t1.exon4;Parent=MS.gene041535.t1 |
chr8.2 | CDS | 11053307 | 11053384 | 11053307 | ID=cds.MS.gene041535.t1;Parent=MS.gene041535.t1 |
chr8.2 | exon | 11051096 | 11051279 | 11051096 | ID=MS.gene041535.t1.exon5;Parent=MS.gene041535.t1 |
chr8.2 | CDS | 11051096 | 11051279 | 11051096 | ID=cds.MS.gene041535.t1;Parent=MS.gene041535.t1 |
chr8.2 | exon | 11048673 | 11048923 | 11048673 | ID=MS.gene041535.t1.exon6;Parent=MS.gene041535.t1 |
chr8.2 | CDS | 11048673 | 11048923 | 11048673 | ID=cds.MS.gene041535.t1;Parent=MS.gene041535.t1 |
chr8.2 | exon | 11048205 | 11048583 | 11048205 | ID=MS.gene041535.t1.exon7;Parent=MS.gene041535.t1 |
chr8.2 | CDS | 11048205 | 11048583 | 11048205 | ID=cds.MS.gene041535.t1;Parent=MS.gene041535.t1 |
chr8.2 | exon | 11046926 | 11047003 | 11046926 | ID=MS.gene041535.t1.exon8;Parent=MS.gene041535.t1 |
chr8.2 | CDS | 11046926 | 11047003 | 11046926 | ID=cds.MS.gene041535.t1;Parent=MS.gene041535.t1 |
chr8.2 | exon | 11045234 | 11045418 | 11045234 | ID=MS.gene041535.t1.exon9;Parent=MS.gene041535.t1 |
chr8.2 | CDS | 11045234 | 11045418 | 11045234 | ID=cds.MS.gene041535.t1;Parent=MS.gene041535.t1 |
chr8.2 | exon | 11045062 | 11045112 | 11045062 | ID=MS.gene041535.t1.exon10;Parent=MS.gene041535.t1 |
chr8.2 | CDS | 11045062 | 11045112 | 11045062 | ID=cds.MS.gene041535.t1;Parent=MS.gene041535.t1 |
chr8.2 | exon | 11043377 | 11043706 | 11043377 | ID=MS.gene041535.t1.exon11;Parent=MS.gene041535.t1 |
chr8.2 | CDS | 11043377 | 11043706 | 11043377 | ID=cds.MS.gene041535.t1;Parent=MS.gene041535.t1 |
chr8.2 | exon | 11043111 | 11043289 | 11043111 | ID=MS.gene041535.t1.exon12;Parent=MS.gene041535.t1 |
chr8.2 | CDS | 11043111 | 11043289 | 11043111 | ID=cds.MS.gene041535.t1;Parent=MS.gene041535.t1 |
chr8.2 | exon | 11042145 | 11042427 | 11042145 | ID=MS.gene041535.t1.exon13;Parent=MS.gene041535.t1 |
chr8.2 | CDS | 11042145 | 11042427 | 11042145 | ID=cds.MS.gene041535.t1;Parent=MS.gene041535.t1 |
chr8.2 | exon | 11041283 | 11041492 | 11041283 | ID=MS.gene041535.t1.exon14;Parent=MS.gene041535.t1 |
chr8.2 | CDS | 11041283 | 11041492 | 11041283 | ID=cds.MS.gene041535.t1;Parent=MS.gene041535.t1 |
chr8.2 | exon | 11040460 | 11040621 | 11040460 | ID=MS.gene041535.t1.exon15;Parent=MS.gene041535.t1 |
chr8.2 | CDS | 11040460 | 11040621 | 11040460 | ID=cds.MS.gene041535.t1;Parent=MS.gene041535.t1 |
chr8.2 | exon | 11040185 | 11040328 | 11040185 | ID=MS.gene041535.t1.exon16;Parent=MS.gene041535.t1 |
chr8.2 | CDS | 11040185 | 11040328 | 11040185 | ID=cds.MS.gene041535.t1;Parent=MS.gene041535.t1 |
chr8.2 | exon | 11039845 | 11040069 | 11039845 | ID=MS.gene041535.t1.exon17;Parent=MS.gene041535.t1 |
chr8.2 | CDS | 11039845 | 11040069 | 11039845 | ID=cds.MS.gene041535.t1;Parent=MS.gene041535.t1 |
chr8.2 | exon | 11038763 | 11039056 | 11038763 | ID=MS.gene041535.t1.exon18;Parent=MS.gene041535.t1 |
chr8.2 | CDS | 11038763 | 11039056 | 11038763 | ID=cds.MS.gene041535.t1;Parent=MS.gene041535.t1 |
chr8.2 | exon | 11037395 | 11037559 | 11037395 | ID=MS.gene041535.t1.exon19;Parent=MS.gene041535.t1 |
chr8.2 | CDS | 11037395 | 11037559 | 11037395 | ID=cds.MS.gene041535.t1;Parent=MS.gene041535.t1 |
Gene Sequence |
Protein sequence |