Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene041549.t1 | XP_024637179.1 | 92.3 | 246 | 19 | 0 | 26 | 271 | 147 | 392 | 3.80E-123 | 451.1 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene041549.t1 | G7JKC7 | 92.3 | 246 | 19 | 0 | 26 | 271 | 147 | 392 | 2.7e-123 | 451.1 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene041549.t1 | TR | mTERF |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene041549.t1 | MTR_4g119550 | 92.276 | 246 | 19 | 0 | 26 | 271 | 147 | 392 | 1.62e-170 | 476 |
MS.gene041549.t1 | MTR_2g437060 | 50.820 | 244 | 120 | 0 | 26 | 269 | 152 | 395 | 9.93e-86 | 261 |
MS.gene041549.t1 | MTR_2g436400 | 51.681 | 238 | 115 | 0 | 26 | 263 | 144 | 381 | 3.97e-85 | 259 |
MS.gene041549.t1 | MTR_2g437080 | 48.134 | 268 | 137 | 1 | 4 | 269 | 113 | 380 | 5.64e-84 | 256 |
MS.gene041549.t1 | MTR_2g437020 | 53.527 | 241 | 109 | 2 | 31 | 269 | 141 | 380 | 2.92e-83 | 254 |
MS.gene041549.t1 | MTR_2g437130 | 50.562 | 267 | 128 | 2 | 4 | 267 | 114 | 379 | 8.23e-81 | 248 |
MS.gene041549.t1 | MTR_2g437240 | 52.500 | 240 | 111 | 1 | 31 | 267 | 167 | 406 | 1.16e-80 | 249 |
MS.gene041549.t1 | MTR_2g437040 | 46.914 | 243 | 129 | 0 | 27 | 269 | 138 | 380 | 2.07e-80 | 247 |
MS.gene041549.t1 | MTR_2g436440 | 47.303 | 241 | 127 | 0 | 28 | 268 | 145 | 385 | 3.80e-80 | 247 |
MS.gene041549.t1 | MTR_2g437030 | 47.951 | 244 | 127 | 0 | 26 | 269 | 223 | 466 | 5.34e-78 | 244 |
MS.gene041549.t1 | MTR_2g437200 | 49.789 | 237 | 116 | 1 | 26 | 259 | 162 | 398 | 2.21e-77 | 240 |
MS.gene041549.t1 | MTR_2g437180 | 48.413 | 252 | 125 | 2 | 19 | 267 | 139 | 388 | 2.91e-75 | 234 |
MS.gene041549.t1 | MTR_2g438020 | 47.200 | 250 | 129 | 1 | 19 | 265 | 194 | 443 | 2.71e-74 | 235 |
MS.gene041549.t1 | MTR_2g438010 | 44.727 | 275 | 141 | 3 | 1 | 267 | 140 | 411 | 3.39e-74 | 233 |
MS.gene041549.t1 | MTR_2g437990 | 45.556 | 270 | 143 | 3 | 4 | 269 | 123 | 392 | 1.10e-73 | 231 |
MS.gene041549.t1 | MTR_2g437960 | 45.091 | 275 | 144 | 4 | 1 | 269 | 123 | 396 | 1.97e-73 | 230 |
MS.gene041549.t1 | MTR_2g437160 | 44.815 | 270 | 145 | 3 | 4 | 269 | 136 | 405 | 3.91e-73 | 229 |
MS.gene041549.t1 | MTR_2g437960 | 45.091 | 275 | 144 | 4 | 1 | 269 | 123 | 396 | 4.07e-73 | 230 |
MS.gene041549.t1 | MTR_2g437120 | 45.788 | 273 | 140 | 5 | 1 | 267 | 121 | 391 | 2.82e-72 | 228 |
MS.gene041549.t1 | MTR_2g076320 | 45.353 | 269 | 142 | 3 | 4 | 267 | 123 | 391 | 4.28e-72 | 226 |
MS.gene041549.t1 | MTR_2g436460 | 44.487 | 263 | 141 | 3 | 4 | 262 | 118 | 379 | 2.28e-71 | 224 |
MS.gene041549.t1 | MTR_2g437170 | 47.154 | 246 | 124 | 3 | 28 | 267 | 153 | 398 | 8.49e-71 | 223 |
MS.gene041549.t1 | MTR_2g437150 | 46.748 | 246 | 125 | 3 | 28 | 267 | 153 | 398 | 1.20e-70 | 223 |
MS.gene041549.t1 | MTR_2g437100 | 49.160 | 238 | 115 | 3 | 28 | 259 | 158 | 395 | 2.81e-70 | 222 |
MS.gene041549.t1 | MTR_2g437940 | 48.661 | 224 | 112 | 1 | 47 | 267 | 139 | 362 | 1.56e-68 | 216 |
MS.gene041549.t1 | MTR_4g119580 | 44.186 | 258 | 138 | 3 | 4 | 257 | 115 | 370 | 3.36e-66 | 211 |
MS.gene041549.t1 | MTR_2g437260 | 41.079 | 241 | 140 | 1 | 26 | 264 | 131 | 371 | 1.09e-64 | 207 |
MS.gene041549.t1 | MTR_2g437090 | 51.190 | 168 | 82 | 0 | 102 | 269 | 1 | 168 | 3.08e-62 | 194 |
MS.gene041549.t1 | MTR_2g437160 | 41.667 | 252 | 130 | 2 | 35 | 269 | 63 | 314 | 6.09e-62 | 198 |
MS.gene041549.t1 | MTR_2g019840 | 40.741 | 270 | 152 | 5 | 4 | 268 | 114 | 380 | 3.01e-61 | 198 |
MS.gene041549.t1 | MTR_4g120380 | 39.300 | 257 | 152 | 2 | 4 | 257 | 115 | 370 | 1.11e-58 | 191 |
MS.gene041549.t1 | MTR_2g019810 | 41.762 | 261 | 144 | 5 | 4 | 259 | 102 | 359 | 3.39e-57 | 187 |
MS.gene041549.t1 | MTR_4g120380 | 40.084 | 237 | 138 | 2 | 4 | 237 | 115 | 350 | 2.35e-54 | 181 |
MS.gene041549.t1 | MTR_4g119570 | 39.655 | 232 | 107 | 1 | 26 | 257 | 31 | 229 | 9.80e-53 | 171 |
MS.gene041549.t1 | MTR_3g450500 | 31.835 | 267 | 164 | 5 | 4 | 257 | 109 | 370 | 1.80e-42 | 149 |
MS.gene041549.t1 | MTR_4g007490 | 30.943 | 265 | 168 | 5 | 4 | 257 | 108 | 368 | 3.74e-34 | 127 |
MS.gene041549.t1 | MTR_2g436380 | 37.069 | 116 | 64 | 4 | 102 | 216 | 1 | 108 | 6.99e-18 | 81.6 |
MS.gene041549.t1 | MTR_8g081000 | 23.482 | 247 | 185 | 3 | 14 | 257 | 140 | 385 | 2.65e-17 | 81.3 |
MS.gene041549.t1 | MTR_8g081000 | 23.482 | 247 | 185 | 3 | 14 | 257 | 140 | 385 | 2.78e-17 | 81.3 |
MS.gene041549.t1 | MTR_8g081000 | 23.482 | 247 | 185 | 3 | 14 | 257 | 140 | 385 | 2.97e-17 | 81.3 |
MS.gene041549.t1 | MTR_2g019830 | 51.852 | 81 | 38 | 1 | 184 | 264 | 125 | 204 | 7.12e-17 | 77.4 |
MS.gene041549.t1 | MTR_8g080990 | 23.967 | 242 | 168 | 4 | 21 | 253 | 134 | 368 | 7.60e-17 | 79.7 |
MS.gene041549.t1 | MTR_3g085240 | 44.944 | 89 | 32 | 1 | 161 | 249 | 176 | 247 | 7.49e-15 | 72.8 |
MS.gene041549.t1 | MTR_4g119615 | 53.061 | 49 | 23 | 0 | 201 | 249 | 26 | 74 | 1.19e-11 | 60.1 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene041549.t1 | AT5G07900 | 32.061 | 262 | 168 | 6 | 4 | 256 | 139 | 399 | 8.25e-43 | 150 |
MS.gene041549.t1 | AT1G21150 | 28.137 | 263 | 179 | 5 | 3 | 256 | 89 | 350 | 3.80e-25 | 102 |
MS.gene041549.t1 | AT1G21150 | 28.352 | 261 | 177 | 5 | 3 | 254 | 125 | 384 | 7.79e-25 | 102 |
MS.gene041549.t1 | AT1G21150 | 28.137 | 263 | 179 | 5 | 1 | 254 | 187 | 448 | 1.36e-24 | 102 |
MS.gene041549.t1 | AT5G64950 | 25.746 | 268 | 185 | 5 | 4 | 257 | 109 | 376 | 1.64e-16 | 79.0 |
MS.gene041549.t1 | AT1G61970 | 24.800 | 250 | 130 | 6 | 51 | 242 | 150 | 399 | 3.29e-13 | 69.3 |
MS.gene041549.t1 | AT1G61970 | 24.800 | 250 | 130 | 6 | 51 | 242 | 150 | 399 | 3.29e-13 | 69.3 |
MS.gene041549.t1 | AT1G61970 | 24.800 | 250 | 130 | 6 | 51 | 242 | 150 | 399 | 3.29e-13 | 69.3 |
MS.gene041549.t1 | AT1G61970 | 24.800 | 250 | 130 | 6 | 51 | 242 | 150 | 399 | 3.29e-13 | 69.3 |
MS.gene041549.t1 | AT1G61970 | 24.800 | 250 | 130 | 6 | 51 | 242 | 150 | 399 | 3.29e-13 | 69.3 |
MS.gene041549.t1 | AT1G61970 | 24.800 | 250 | 130 | 6 | 51 | 242 | 150 | 399 | 3.29e-13 | 69.3 |
MS.gene041549.t1 | AT1G61970 | 24.800 | 250 | 130 | 6 | 51 | 242 | 150 | 399 | 3.29e-13 | 69.3 |
MS.gene041549.t1 | AT1G61980 | 25.359 | 209 | 119 | 4 | 72 | 243 | 192 | 400 | 1.85e-12 | 67.0 |
MS.gene041549.t1 | AT1G61980 | 25.359 | 209 | 119 | 4 | 72 | 243 | 192 | 400 | 1.85e-12 | 67.0 |
MS.gene041549.t1 | AT1G61980 | 25.359 | 209 | 119 | 4 | 72 | 243 | 192 | 400 | 1.85e-12 | 67.0 |
MS.gene041549.t1 | AT1G62110 | 25.123 | 203 | 133 | 5 | 52 | 243 | 246 | 440 | 2.88e-11 | 63.5 |
Find 51 sgRNAs with CRISPR-Local
Find 68 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ATAACGATTAATACATTTAA+TGG | 0.168353 | 8.2:+10922047 | None:intergenic |
TCAGTTAGGTTTGAATTCTT+TGG | 0.234752 | 8.2:-10921665 | MS.gene041549:CDS |
TATGACAGAGAAGTTGTTTC+TGG | 0.244337 | 8.2:-10921512 | MS.gene041549:CDS |
GTCAAATTATTGCTTGATAA+TGG | 0.274159 | 8.2:-10921988 | MS.gene041549:CDS |
TCATTTGTTGAAGCTGTATC+AGG | 0.289926 | 8.2:-10921455 | MS.gene041549:CDS |
CAACCTGTTGGAGACTATTC+AGG | 0.331705 | 8.2:-10921905 | MS.gene041549:CDS |
AACACGTTCTTCAAGCATTT+AGG | 0.332466 | 8.2:-10921753 | MS.gene041549:CDS |
TTTGGTAAAAGTACCTTGTT+GGG | 0.357862 | 8.2:+10922219 | None:intergenic |
GATTGGGCAAACTTCTTAAG+AGG | 0.387256 | 8.2:+10922124 | None:intergenic |
CTTTGGTAAAAGTACCTTGT+TGG | 0.403823 | 8.2:+10922218 | None:intergenic |
ACCTTACTGTATGTTGTCTT+CGG | 0.415933 | 8.2:-10921725 | MS.gene041549:CDS |
TTGCAGTTCCTTGTATCTAA+AGG | 0.428240 | 8.2:-10921574 | MS.gene041549:CDS |
AAATTCGTAATATCATCAAA+AGG | 0.437298 | 8.2:-10922269 | MS.gene041549:CDS |
AGCGCTTGGGTTGATCAGTT+AGG | 0.440546 | 8.2:-10921679 | MS.gene041549:CDS |
ATAAGTAGGGATGATATGAT+TGG | 0.445105 | 8.2:+10922107 | None:intergenic |
AACTGCAAAACTGCAGCCCT+TGG | 0.446416 | 8.2:+10921589 | None:intergenic |
TTTGGATCTTGTTAATGCTC+CGG | 0.453825 | 8.2:-10921647 | MS.gene041549:CDS |
TTTATTGAGACTCGAGAAAC+GGG | 0.454508 | 8.2:-10921617 | MS.gene041549:CDS |
ATTCCTGAATAGTCTCCAAC+AGG | 0.466759 | 8.2:+10921902 | None:intergenic |
TTGGATCTTGTTAATGCTCC+GGG | 0.475407 | 8.2:-10921646 | MS.gene041549:CDS |
TTCTCAAACCTTTAGATACA+AGG | 0.476085 | 8.2:+10921566 | None:intergenic |
CCTCTCATAAAATGATAAGT+AGG | 0.495753 | 8.2:+10922093 | None:intergenic |
AACTTCTCTGTCATAGCAAA+CGG | 0.496374 | 8.2:+10921520 | None:intergenic |
AAAGTACCTTGTTGGGGTCG+AGG | 0.506736 | 8.2:+10922226 | None:intergenic |
AATTCGTAATATCATCAAAA+GGG | 0.515448 | 8.2:-10922268 | MS.gene041549:CDS |
TTGGATGAACAATATATCCT+AGG | 0.518394 | 8.2:+10921925 | None:intergenic |
TAAGTAGGGATGATATGATT+GGG | 0.531463 | 8.2:+10922108 | None:intergenic |
ATATTGTTCATCCAACCTGT+TGG | 0.532063 | 8.2:-10921917 | MS.gene041549:CDS |
GATATTACGAATTTGAGTGT+TGG | 0.541490 | 8.2:+10922278 | None:intergenic |
ATTCAGGAATTGAAGCAACT+AGG | 0.549069 | 8.2:-10921889 | MS.gene041549:CDS |
TCGAGAAACGGGTTATTCCA+AGG | 0.551680 | 8.2:-10921606 | MS.gene041549:CDS |
ACGTTCTTCAAGCATTTAGG+AGG | 0.552337 | 8.2:-10921750 | MS.gene041549:CDS |
AATGAATCTTGCAAATAGCA+TGG | 0.553137 | 8.2:-10921428 | MS.gene041549:CDS |
CTCTCATAAAATGATAAGTA+GGG | 0.556083 | 8.2:+10922094 | None:intergenic |
CTGAATAGTCTCCAACAGGT+TGG | 0.557447 | 8.2:+10921906 | None:intergenic |
AGAAGTTACACACTTCATGA+AGG | 0.561506 | 8.2:+10921397 | None:intergenic |
TGATACAGCTTCAACAAATG+AGG | 0.568471 | 8.2:+10921457 | None:intergenic |
CATTGTTGCGTAATTCGCCT+AGG | 0.579851 | 8.2:-10921942 | MS.gene041549:CDS |
AGAAAACTGTGAATGAAACT+AGG | 0.580330 | 8.2:-10921822 | MS.gene041549:CDS |
GCCGAAGACAACATACAGTA+AGG | 0.592002 | 8.2:+10921724 | None:intergenic |
TTTGAGTGTTGGAGAAGCCA+TGG | 0.596210 | 8.2:+10922289 | None:intergenic |
AGCAAACGGTGCACTTAGTG+AGG | 0.600976 | 8.2:+10921534 | None:intergenic |
AACTGTGAATGAAACTAGGT+GGG | 0.613433 | 8.2:-10921818 | MS.gene041549:CDS |
CGAGAAACGGGTTATTCCAA+GGG | 0.615093 | 8.2:-10921605 | MS.gene041549:CDS |
TTGAGTGTTGGAGAAGCCAT+GGG | 0.633074 | 8.2:+10922290 | None:intergenic |
CTTATGCCTCGACCCCAACA+AGG | 0.635453 | 8.2:-10922232 | MS.gene041549:intron |
TGTAGCAATATTTGAGTGTG+TGG | 0.635496 | 8.2:+10921963 | None:intergenic |
AAACTGTGAATGAAACTAGG+TGG | 0.639268 | 8.2:-10921819 | MS.gene041549:CDS |
ATATCATCAAAAGGGAACCT+CGG | 0.640196 | 8.2:-10922260 | MS.gene041549:CDS |
TTGGTAAAAGTACCTTGTTG+GGG | 0.646951 | 8.2:+10922220 | None:intergenic |
TCGAGGCATAAGAGTAACCG+AGG | 0.694428 | 8.2:+10922243 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | ATAACGATTAATACATTTAA+TGG | + | chr8.2:10921654-10921673 | None:intergenic | 15.0% |
!!! | AAGTTGAAATTTTTAAGAAA+TGG | - | chr8.2:10921909-10921928 | MS.gene041549:CDS | 15.0% |
!!! | AGTTGAAATTTTTAAGAAAT+GGG | - | chr8.2:10921910-10921929 | MS.gene041549:CDS | 15.0% |
!! | AAATTCGTAATATCATCAAA+AGG | - | chr8.2:10921429-10921448 | MS.gene041549:CDS | 20.0% |
!! | AATTCGTAATATCATCAAAA+GGG | - | chr8.2:10921430-10921449 | MS.gene041549:CDS | 20.0% |
!! | GAAAGTAAAAATTGAAACTT+TGG | + | chr8.2:10921500-10921519 | None:intergenic | 20.0% |
!!! | CAAATTTGTGAAATGTTTTA+AGG | - | chr8.2:10922210-10922229 | MS.gene041549:intron | 20.0% |
!!! | GTTGAAATTTTTAAGAAATG+GGG | - | chr8.2:10921911-10921930 | MS.gene041549:CDS | 20.0% |
!!! | TTTCAATTTTTACTTTCCAA+AGG | - | chr8.2:10921503-10921522 | MS.gene041549:CDS | 20.0% |
! | CTCTCATAAAATGATAAGTA+GGG | + | chr8.2:10921607-10921626 | None:intergenic | 25.0% |
! | GTCAAATTATTGCTTGATAA+TGG | - | chr8.2:10921710-10921729 | MS.gene041549:CDS | 25.0% |
!! | CTACTTATCATTTTATGAGA+GGG | - | chr8.2:10921606-10921625 | MS.gene041549:CDS | 25.0% |
!!! | AAATTTTTAAGAAATGGGGT+TGG | - | chr8.2:10921915-10921934 | MS.gene041549:CDS | 25.0% |
!!! | ATTTGTGAAATGTTTTAAGG+AGG | - | chr8.2:10922213-10922232 | MS.gene041549:intron | 25.0% |
AAACTTCTTAAGAGGAATCT+AGG | + | chr8.2:10921569-10921588 | None:intergenic | 30.0% | |
AACTTCTTAAGAGGAATCTA+GGG | + | chr8.2:10921568-10921587 | None:intergenic | 30.0% | |
AATGAATCTTGCAAATAGCA+TGG | - | chr8.2:10922270-10922289 | MS.gene041549:CDS | 30.0% | |
AGAAAACTGTGAATGAAACT+AGG | - | chr8.2:10921876-10921895 | MS.gene041549:CDS | 30.0% | |
AGTCTCAATAAAAAGATTCC+CGG | + | chr8.2:10922073-10922092 | None:intergenic | 30.0% | |
ATAAGTAGGGATGATATGAT+TGG | + | chr8.2:10921594-10921613 | None:intergenic | 30.0% | |
CCTCTCATAAAATGATAAGT+AGG | + | chr8.2:10921608-10921627 | None:intergenic | 30.0% | |
GATATTACGAATTTGAGTGT+TGG | + | chr8.2:10921423-10921442 | None:intergenic | 30.0% | |
TAAGTAGGGATGATATGATT+GGG | + | chr8.2:10921593-10921612 | None:intergenic | 30.0% | |
TCAGTTAGGTTTGAATTCTT+TGG | - | chr8.2:10922033-10922052 | MS.gene041549:CDS | 30.0% | |
TTCTCAAACCTTTAGATACA+AGG | + | chr8.2:10922135-10922154 | None:intergenic | 30.0% | |
TTGGATGAACAATATATCCT+AGG | + | chr8.2:10921776-10921795 | None:intergenic | 30.0% | |
! | CCTACTTATCATTTTATGAG+AGG | - | chr8.2:10921605-10921624 | MS.gene041549:CDS | 30.0% |
! | TTTTATTGAGACTCGAGAAA+CGG | - | chr8.2:10922080-10922099 | MS.gene041549:CDS | 30.0% |
!! | TTTGGTAAAAGTACCTTGTT+GGG | + | chr8.2:10921482-10921501 | None:intergenic | 30.0% |
AAACTGTGAATGAAACTAGG+TGG | - | chr8.2:10921879-10921898 | MS.gene041549:CDS | 35.0% | |
AACACGTTCTTCAAGCATTT+AGG | - | chr8.2:10921945-10921964 | MS.gene041549:CDS | 35.0% | |
AACTGTGAATGAAACTAGGT+GGG | - | chr8.2:10921880-10921899 | MS.gene041549:CDS | 35.0% | |
AACTTCTCTGTCATAGCAAA+CGG | + | chr8.2:10922181-10922200 | None:intergenic | 35.0% | |
ACCTTACTGTATGTTGTCTT+CGG | - | chr8.2:10921973-10921992 | MS.gene041549:CDS | 35.0% | |
ATATCATCAAAAGGGAACCT+CGG | - | chr8.2:10921438-10921457 | MS.gene041549:CDS | 35.0% | |
ATATTGTTCATCCAACCTGT+TGG | - | chr8.2:10921781-10921800 | MS.gene041549:CDS | 35.0% | |
ATTCAGGAATTGAAGCAACT+AGG | - | chr8.2:10921809-10921828 | MS.gene041549:CDS | 35.0% | |
TGATACAGCTTCAACAAATG+AGG | + | chr8.2:10922244-10922263 | None:intergenic | 35.0% | |
TGTAGCAATATTTGAGTGTG+TGG | + | chr8.2:10921738-10921757 | None:intergenic | 35.0% | |
TTGCAGTTCCTTGTATCTAA+AGG | - | chr8.2:10922124-10922143 | MS.gene041549:CDS | 35.0% | |
TTTATTGAGACTCGAGAAAC+GGG | - | chr8.2:10922081-10922100 | MS.gene041549:CDS | 35.0% | |
TTTGGATCTTGTTAATGCTC+CGG | - | chr8.2:10922051-10922070 | MS.gene041549:CDS | 35.0% | |
! | TATGACAGAGAAGTTGTTTC+TGG | - | chr8.2:10922186-10922205 | MS.gene041549:intron | 35.0% |
! | TCATTTGTTGAAGCTGTATC+AGG | - | chr8.2:10922243-10922262 | MS.gene041549:CDS | 35.0% |
!! | CTTTGGTAAAAGTACCTTGT+TGG | + | chr8.2:10921483-10921502 | None:intergenic | 35.0% |
!! | TTGGTAAAAGTACCTTGTTG+GGG | + | chr8.2:10921481-10921500 | None:intergenic | 35.0% |
!! | TTTTAAGAAATGGGGTTGGT+CGG | - | chr8.2:10921919-10921938 | MS.gene041549:CDS | 35.0% |
!!! | TTCAACTTTTGCTGTTGCAT+TGG | - | chr8.2:10921847-10921866 | MS.gene041549:CDS | 35.0% |
ACGTTCTTCAAGCATTTAGG+AGG | - | chr8.2:10921948-10921967 | MS.gene041549:CDS | 40.0% | |
ATTCCTGAATAGTCTCCAAC+AGG | + | chr8.2:10921799-10921818 | None:intergenic | 40.0% | |
GATTGGGCAAACTTCTTAAG+AGG | + | chr8.2:10921577-10921596 | None:intergenic | 40.0% | |
GCGAACAATATCAGAAGTAG+AGG | + | chr8.2:10921531-10921550 | None:intergenic | 40.0% | |
TTGGATCTTGTTAATGCTCC+GGG | - | chr8.2:10922052-10922071 | MS.gene041549:CDS | 40.0% | |
CAACCTGTTGGAGACTATTC+AGG | - | chr8.2:10921793-10921812 | MS.gene041549:CDS | 45.0% | |
CATTGTTGCGTAATTCGCCT+AGG | - | chr8.2:10921756-10921775 | MS.gene041549:CDS | 45.0% | |
CTGAATAGTCTCCAACAGGT+TGG | + | chr8.2:10921795-10921814 | None:intergenic | 45.0% | |
GCCGAAGACAACATACAGTA+AGG | + | chr8.2:10921977-10921996 | None:intergenic | 45.0% | |
!! | ATCAGAAGTAGAGGCACCTT+TGG | + | chr8.2:10921522-10921541 | None:intergenic | 45.0% |
!! | CGAGAAACGGGTTATTCCAA+GGG | - | chr8.2:10922093-10922112 | MS.gene041549:CDS | 45.0% |
!! | TCGAGAAACGGGTTATTCCA+AGG | - | chr8.2:10922092-10922111 | MS.gene041549:CDS | 45.0% |
AACTGCAAAACTGCAGCCCT+TGG | + | chr8.2:10922112-10922131 | None:intergenic | 50.0% | |
AGCAAACGGTGCACTTAGTG+AGG | + | chr8.2:10922167-10922186 | None:intergenic | 50.0% | |
TCGAGGCATAAGAGTAACCG+AGG | + | chr8.2:10921458-10921477 | None:intergenic | 50.0% | |
! | AAAGTACCTTGTTGGGGTCG+AGG | + | chr8.2:10921475-10921494 | None:intergenic | 50.0% |
!! | AGCGCTTGGGTTGATCAGTT+AGG | - | chr8.2:10922019-10922038 | MS.gene041549:CDS | 50.0% |
!!! | CGATGCAGTTTTGAGCGCTT+GGG | - | chr8.2:10922006-10922025 | MS.gene041549:CDS | 50.0% |
!!! | TCGATGCAGTTTTGAGCGCT+TGG | - | chr8.2:10922005-10922024 | MS.gene041549:CDS | 50.0% |
CTTATGCCTCGACCCCAACA+AGG | - | chr8.2:10921466-10921485 | MS.gene041549:CDS | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8.2 | gene | 10921411 | 10922309 | 10921411 | ID=MS.gene041549 |
chr8.2 | mRNA | 10921411 | 10922309 | 10921411 | ID=MS.gene041549.t1;Parent=MS.gene041549 |
chr8.2 | exon | 10922233 | 10922309 | 10922233 | ID=MS.gene041549.t1.exon1;Parent=MS.gene041549.t1 |
chr8.2 | CDS | 10922233 | 10922309 | 10922233 | ID=cds.MS.gene041549.t1;Parent=MS.gene041549.t1 |
chr8.2 | exon | 10921411 | 10922149 | 10921411 | ID=MS.gene041549.t1.exon2;Parent=MS.gene041549.t1 |
chr8.2 | CDS | 10921411 | 10922149 | 10921411 | ID=cds.MS.gene041549.t1;Parent=MS.gene041549.t1 |
Gene Sequence |
Protein sequence |