AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene041551

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene041551.t1 MTR_4g120380 66.577 371 119 3 1 366 1 371 7.74e-177 496
MS.gene041551.t1 MTR_4g119580 68.241 381 108 3 1 372 1 377 2.80e-175 493
MS.gene041551.t1 MTR_4g120380 63.298 376 130 5 1 369 1 375 2.85e-166 471
MS.gene041551.t1 MTR_2g437040 46.774 372 185 4 1 364 1 367 4.48e-108 322
MS.gene041551.t1 MTR_4g119550 49.235 327 165 1 39 364 51 377 1.33e-106 318
MS.gene041551.t1 MTR_2g436400 45.808 334 179 1 33 364 41 374 8.66e-103 308
MS.gene041551.t1 MTR_2g436460 46.307 352 188 1 15 365 23 374 6.05e-102 306
MS.gene041551.t1 MTR_2g437260 44.675 338 183 2 29 364 28 363 2.69e-101 305
MS.gene041551.t1 MTR_2g437030 44.533 375 197 3 1 364 79 453 9.43e-99 301
MS.gene041551.t1 MTR_2g437990 45.977 348 180 3 25 364 32 379 2.78e-98 299
MS.gene041551.t1 MTR_2g438010 45.882 340 179 2 30 364 61 400 1.00e-97 297
MS.gene041551.t1 MTR_2g076320 44.986 349 183 3 25 364 32 380 5.59e-97 295
MS.gene041551.t1 MTR_2g437160 45.821 347 183 4 23 364 46 392 8.42e-96 291
MS.gene041551.t1 MTR_2g437200 43.316 374 172 3 29 364 24 395 1.90e-95 290
MS.gene041551.t1 MTR_2g437130 43.132 364 204 2 1 364 8 368 2.60e-95 290
MS.gene041551.t1 MTR_2g437120 45.299 351 178 5 23 364 35 380 6.61e-95 290
MS.gene041551.t1 MTR_2g437150 46.154 351 178 4 25 364 37 387 9.50e-95 289
MS.gene041551.t1 MTR_2g437170 46.356 343 177 3 29 364 45 387 1.16e-94 289
MS.gene041551.t1 MTR_2g437100 47.432 331 167 3 41 364 62 392 5.03e-94 287
MS.gene041551.t1 MTR_2g437060 41.689 367 205 3 7 364 16 382 1.17e-93 286
MS.gene041551.t1 MTR_2g437960 44.985 329 176 2 41 364 55 383 4.66e-93 285
MS.gene041551.t1 MTR_2g437960 44.985 329 176 2 41 364 55 383 8.87e-93 285
MS.gene041551.t1 MTR_2g437020 44.477 344 183 4 25 364 28 367 3.39e-92 281
MS.gene041551.t1 MTR_2g437080 41.892 370 204 4 1 364 3 367 2.63e-91 279
MS.gene041551.t1 MTR_2g436440 43.807 331 184 1 36 364 43 373 5.07e-90 276
MS.gene041551.t1 MTR_2g437180 42.382 361 197 5 14 365 20 378 6.90e-90 276
MS.gene041551.t1 MTR_4g119570 55.952 252 78 1 116 367 13 231 6.91e-90 270
MS.gene041551.t1 MTR_2g437240 41.758 364 174 2 39 364 32 395 6.10e-89 274
MS.gene041551.t1 MTR_2g019810 42.340 359 197 5 8 364 6 356 1.66e-85 264
MS.gene041551.t1 MTR_2g019840 42.105 361 197 5 6 364 18 368 6.05e-85 263
MS.gene041551.t1 MTR_2g438020 41.436 362 174 2 41 364 73 434 7.12e-84 264
MS.gene041551.t1 MTR_2g437940 43.252 326 158 4 41 364 51 351 3.61e-81 253
MS.gene041551.t1 MTR_4g007490 32.754 345 222 5 28 364 25 367 1.55e-60 199
MS.gene041551.t1 MTR_3g450500 31.339 351 233 3 26 369 25 374 1.16e-58 195
MS.gene041551.t1 MTR_2g437160 48.810 168 86 0 197 364 134 301 1.74e-48 167
MS.gene041551.t1 MTR_2g437160 44.792 96 50 2 23 115 46 141 8.88e-15 74.7
MS.gene041551.t1 MTR_2g437090 50.993 151 74 0 214 364 5 155 9.40e-48 160
MS.gene041551.t1 MTR_8g080990 27.219 338 242 3 34 367 37 374 1.50e-35 134
MS.gene041551.t1 MTR_8g081000 25.072 347 256 3 34 376 50 396 6.86e-34 130
MS.gene041551.t1 MTR_2g436370 37.766 188 110 4 5 186 9 195 7.87e-34 125
MS.gene041551.t1 MTR_8g081000 25.291 344 253 3 34 373 50 393 5.68e-33 127
MS.gene041551.t1 MTR_8g081000 25.145 346 250 4 34 375 50 390 8.33e-32 124
MS.gene041551.t1 MTR_4g119615 69.565 69 15 1 309 377 26 88 1.60e-21 88.6
MS.gene041551.t1 MTR_3g085240 35.821 134 77 2 23 155 41 166 4.27e-14 72.0
MS.gene041551.t1 MTR_3g085240 37.895 95 38 2 266 356 169 246 2.68e-11 63.9
MS.gene041551.t1 MTR_2g034600 23.843 281 178 7 76 336 215 479 5.66e-14 73.6
MS.gene041551.t1 MTR_2g034600 23.843 281 178 7 76 336 280 544 7.75e-14 73.2
MS.gene041551.t1 MTR_2g034600 23.843 281 178 7 76 336 276 540 7.84e-14 73.2
MS.gene041551.t1 MTR_4g049400 37.288 118 71 2 21 136 33 149 1.03e-12 67.4
MS.gene041551.t1 MTR_2g019830 58.621 58 23 1 307 364 140 196 4.53e-11 62.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene041551.t1 AT5G07900 32.000 350 225 5 30 366 52 401 1.43e-63 208
MS.gene041551.t1 AT1G21150 28.534 382 252 6 1 362 4 384 1.83e-44 158
MS.gene041551.t1 AT1G21150 28.534 382 252 6 1 362 68 448 8.58e-44 157
MS.gene041551.t1 AT1G21150 28.529 333 230 4 37 362 17 348 8.93e-42 150
MS.gene041551.t1 AT1G61980 26.685 356 222 6 39 356 51 405 4.16e-40 147
MS.gene041551.t1 AT1G61980 26.685 356 222 6 39 356 51 405 4.16e-40 147
MS.gene041551.t1 AT1G61980 26.685 356 222 6 39 356 51 405 4.16e-40 147
MS.gene041551.t1 AT1G61990 28.087 413 239 10 1 364 5 408 6.76e-39 144
MS.gene041551.t1 AT1G61990 28.087 413 239 10 1 364 5 408 6.76e-39 144
MS.gene041551.t1 AT1G61970 25.956 366 230 8 39 364 51 415 4.51e-38 141
MS.gene041551.t1 AT1G61970 25.956 366 230 8 39 364 51 415 4.51e-38 141
MS.gene041551.t1 AT1G61970 25.956 366 230 8 39 364 51 415 4.51e-38 141
MS.gene041551.t1 AT1G61970 25.956 366 230 8 39 364 51 415 4.51e-38 141
MS.gene041551.t1 AT1G61970 25.956 366 230 8 39 364 51 415 4.51e-38 141
MS.gene041551.t1 AT1G61970 25.956 366 230 8 39 364 51 415 4.51e-38 141
MS.gene041551.t1 AT1G61970 25.956 366 230 8 39 364 51 415 4.51e-38 141
MS.gene041551.t1 AT1G62120 25.668 374 237 6 39 371 55 428 5.32e-38 142
MS.gene041551.t1 AT3G46950 25.971 412 227 9 27 364 37 444 1.91e-37 140
MS.gene041551.t1 AT1G62150 25.000 400 221 8 35 357 52 449 4.28e-35 134
MS.gene041551.t1 AT1G62110 26.420 405 219 9 39 364 51 455 2.11e-32 127
MS.gene041551.t1 AT1G62085 30.075 266 175 3 25 279 32 297 1.61e-28 116
MS.gene041551.t1 AT1G62085 30.075 266 175 3 25 279 32 297 1.61e-28 116
MS.gene041551.t1 AT5G64950 26.243 362 249 7 28 376 27 383 4.83e-27 111
MS.gene041551.t1 AT1G61960 28.352 261 179 5 26 279 34 293 6.55e-25 105
MS.gene041551.t1 AT1G61960 32.203 118 77 1 255 369 339 456 3.55e-15 77.0
MS.gene041551.t1 AT1G62010 23.599 339 218 6 73 372 71 407 1.06e-24 104
MS.gene041551.t1 AT5G23930 28.523 298 192 7 27 310 34 324 2.06e-24 104
MS.gene041551.t1 AT1G56380 23.016 378 246 10 32 364 18 395 9.34e-23 99.0
MS.gene041551.t1 AT1G56380 23.016 378 246 10 32 364 7 384 1.09e-22 98.6

Find 76 sgRNAs with CRISPR-Local

Find 99 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAATTGAAACTTTGGCAAAA+TGG 0.240171 8.2:+10908094 None:intergenic
AACTCATCAGTCAAAATAAA+TGG 0.289834 8.2:+10907405 None:intergenic
TTTAGAGTAACGTAACATTT+TGG 0.318656 8.2:+10908365 None:intergenic
AAGGTCTGTGGAGGAGATAA+AGG 0.322778 8.2:-10907781 MS.gene041551:CDS
CCAGATCCAATAATGATAAA+AGG 0.326336 8.2:+10907810 None:intergenic
ATGCATGTAAAATTGAATCT+TGG 0.336264 8.2:+10907643 None:intergenic
GGTGCTGCCATGAGCAATAA+AGG 0.386758 8.2:+10907534 None:intergenic
AGACTAAATCCGAAAAGAAT+TGG 0.387498 8.2:+10907513 None:intergenic
GACAGTGACAATAATGTCTT+GGG 0.388401 8.2:+10908049 None:intergenic
TTCCAAGGGCTTCAGTTATC+CGG 0.401783 8.2:-10907476 MS.gene041551:CDS
TGCATGTAAAATTGAATCTT+GGG 0.402310 8.2:+10907644 None:intergenic
GTCTTGGGGAGAAGCACCTT+TGG 0.403398 8.2:+10908064 None:intergenic
ATCGAAAGGTTTGATAAAGA+AGG 0.405715 8.2:-10907445 MS.gene041551:CDS
CGCTATTAAAGTTATATCTC+GGG 0.407277 8.2:-10907338 MS.gene041551:CDS
AAGTTGGTGTCTTGAAGAAA+TGG 0.411701 8.2:-10907674 MS.gene041551:CDS
GTGGAGGAGATAAAGGGGTT+AGG 0.414916 8.2:-10907774 MS.gene041551:CDS
AGGTCTGTGGAGGAGATAAA+GGG 0.418294 8.2:-10907780 MS.gene041551:CDS
GGCTGTCACTAAATCTCAAT+GGG 0.436061 8.2:-10907703 MS.gene041551:CDS
CAAGTATTTACAATTTGCTT+AGG 0.436803 8.2:-10907839 MS.gene041551:CDS
TTGGATCAAACAGCTTGGTT+GGG 0.439509 8.2:-10907559 MS.gene041551:CDS
TTTGGATCAAACAGCTTGGT+TGG 0.442173 8.2:-10907560 MS.gene041551:CDS
CAGATCGTAGCATAAACTTT+GGG 0.443853 8.2:+10907610 None:intergenic
TGGAGGAGATAAAGGGGTTA+GGG 0.443892 8.2:-10907773 MS.gene041551:CDS
AGTTGGTGTCTTGAAGAAAT+GGG 0.446401 8.2:-10907673 MS.gene041551:CDS
TTGGGATCCTTTATTGCTCA+TGG 0.455848 8.2:-10907541 MS.gene041551:CDS
TGGCTGTCACTAAATCTCAA+TGG 0.459837 8.2:-10907704 MS.gene041551:CDS
TTTATCTGAATCTGAAGAAA+TGG 0.460894 8.2:+10908322 None:intergenic
ACGCTATTAAAGTTATATCT+CGG 0.466280 8.2:-10907339 MS.gene041551:CDS
TTTCTTCAAGACACCAACTT+TGG 0.474001 8.2:+10907677 None:intergenic
GCAGATCGTAGCATAAACTT+TGG 0.481781 8.2:+10907609 None:intergenic
GATGGGGTTTGAAACGATGA+TGG 0.491601 8.2:+10908121 None:intergenic
CTTCTTACCAAATCAAAAGC+AGG 0.493927 8.2:+10907978 None:intergenic
TGACAGTGACAATAATGTCT+TGG 0.497645 8.2:+10908048 None:intergenic
CGAGATCTAGCAATTGAAGT+TGG 0.500150 8.2:+10907909 None:intergenic
TCGAAAGGTTTGATAAAGAA+GGG 0.508372 8.2:-10907444 MS.gene041551:CDS
GGGTGGAATCCTGCGAATGA+TGG 0.511891 8.2:+10908142 None:intergenic
CAGGGATTATTTGTTTGTCA+AGG 0.513847 8.2:+10907997 None:intergenic
TAAAAGAATCGGGTTTGTGA+GGG 0.515496 8.2:+10908210 None:intergenic
GTTTGTCAAGGCTTGAACAA+AGG 0.516951 8.2:+10908009 None:intergenic
GTAATAGCTCTTTGATCAGA+AGG 0.518685 8.2:+10907948 None:intergenic
ATGGGGTTTGAAACGATGAT+GGG 0.526804 8.2:+10908122 None:intergenic
AACCTTTCGATAAAAGATAC+CGG 0.544149 8.2:+10907457 None:intergenic
TCTCAATGGGATGCCAAAGT+TGG 0.546789 8.2:-10907690 MS.gene041551:CDS
TACCGGATAACTGAAGCCCT+TGG 0.548805 8.2:+10907474 None:intergenic
ATGGTGGTGCTGAAAGAGAA+GGG 0.557322 8.2:+10908341 None:intergenic
CTGATGAGTTGTTTCTGCAA+CGG 0.559627 8.2:-10907392 MS.gene041551:CDS
TTATTGGATCTGGTTTGAGA+AGG 0.563650 8.2:-10907800 MS.gene041551:CDS
TCATACCTCATCAACAATTG+TGG 0.563809 8.2:-10908284 MS.gene041551:CDS
ATAAAAGAATCGGGTTTGTG+AGG 0.565444 8.2:+10908209 None:intergenic
AATGGTGGTGCTGAAAGAGA+AGG 0.565965 8.2:+10908340 None:intergenic
GATGGATTGTATCTGATCGT+TGG 0.567441 8.2:+10908160 None:intergenic
AGATACAATCCATCATTCGC+AGG 0.572684 8.2:-10908151 MS.gene041551:CDS
TAGAGAAAAGACTTCTTCCA+AGG 0.575654 8.2:-10907491 MS.gene041551:CDS
TTCTTACCAAATCAAAAGCA+GGG 0.579986 8.2:+10907979 None:intergenic
GGGTTTGAAACGATGATGGG+TGG 0.584866 8.2:+10908125 None:intergenic
GGCTTGAACAAAGGAAACGA+GGG 0.588494 8.2:+10908018 None:intergenic
CTGATCGTTGGAGAAACCAT+GGG 0.591154 8.2:+10908172 None:intergenic
ATAAACCACAATTGTTGATG+AGG 0.592618 8.2:+10908279 None:intergenic
ATCTGGTTTGAGAAGGTCTG+TGG 0.594791 8.2:-10907793 MS.gene041551:CDS
GGTCTGTGGAGGAGATAAAG+GGG 0.597103 8.2:-10907779 MS.gene041551:CDS
TCTGATCGTTGGAGAAACCA+TGG 0.601444 8.2:+10908171 None:intergenic
GAAGCTTTGAGAGCATCTTG+TGG 0.608539 8.2:+10908254 None:intergenic
AAAGTTTATGCTACGATCTG+CGG 0.612569 8.2:-10907607 MS.gene041551:CDS
GAGATATAACTTTAATAGCG+TGG 0.615989 8.2:+10907341 None:intergenic
AAAAGAATCGGGTTTGTGAG+GGG 0.622947 8.2:+10908211 None:intergenic
AGAGAAAAGACTTCTTCCAA+GGG 0.623231 8.2:-10907490 MS.gene041551:CDS
GTTGGTGTCTTGAAGAAATG+GGG 0.624621 8.2:-10907672 MS.gene041551:CDS
ATCTGAATCTGAAGAAATGG+TGG 0.644416 8.2:+10908325 None:intergenic
TGGTTTGAGAAGGTCTGTGG+AGG 0.646724 8.2:-10907790 MS.gene041551:CDS
GCTATTAAAGTTATATCTCG+GGG 0.649807 8.2:-10907337 MS.gene041551:CDS
AATAGAGAAGAGCTCTGAGG+CGG 0.651382 8.2:+10908399 None:intergenic
AGGCTTGAACAAAGGAAACG+AGG 0.672222 8.2:+10908017 None:intergenic
ATTAAAGTTATATCTCGGGG+AGG 0.712652 8.2:-10907334 MS.gene041551:CDS
AGGAATAGAGAAGAGCTCTG+AGG 0.723754 8.2:+10908396 None:intergenic
GAGGCGGTGACAATGAAACA+TGG 0.747817 8.2:+10908415 None:intergenic
ACAGTGACAATAATGTCTTG+GGG 0.749194 8.2:+10908050 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
! AAAAAGGAGATAAAAGAATC+GGG + chr8.2:10907518-10907537 None:intergenic 25.0%
! AAATTGAAACTTTGGCAAAA+TGG + chr8.2:10907624-10907643 None:intergenic 25.0%
! AACTCATCAGTCAAAATAAA+TGG + chr8.2:10908313-10908332 None:intergenic 25.0%
! ACGCTATTAAAGTTATATCT+CGG - chr8.2:10908376-10908395 MS.gene041551:CDS 25.0%
! ATGCATGTAAAATTGAATCT+TGG + chr8.2:10908075-10908094 None:intergenic 25.0%
! GAAAAAGGAGATAAAAGAAT+CGG + chr8.2:10907519-10907538 None:intergenic 25.0%
! GAAGCTAAAAATTGAAACTT+TGG + chr8.2:10907632-10907651 None:intergenic 25.0%
! TCAAGCAAAAAATGAACATT+TGG + chr8.2:10907839-10907858 None:intergenic 25.0%
! TGCATGTAAAATTGAATCTT+GGG + chr8.2:10908074-10908093 None:intergenic 25.0%
! TTTATCTGAATCTGAAGAAA+TGG + chr8.2:10907396-10907415 None:intergenic 25.0%
!! ACTAGTCCTTTTATCATTAT+TGG - chr8.2:10907899-10907918 MS.gene041551:CDS 25.0%
!! CAAGTATTTACAATTTGCTT+AGG - chr8.2:10907876-10907895 MS.gene041551:CDS 25.0%
!!! GTTCATTTTTTGCTTGATTT+TGG - chr8.2:10907842-10907861 MS.gene041551:CDS 25.0%
!!! TTTAGAGTAACGTAACATTT+TGG + chr8.2:10907353-10907372 None:intergenic 25.0%
!!! TTTCAATTTTTAGCTTCCAA+AGG - chr8.2:10907635-10907654 MS.gene041551:CDS 25.0%
AACCTTTCGATAAAAGATAC+CGG + chr8.2:10908261-10908280 None:intergenic 30.0%
ACACAAAAATTGTAGTTGGA+AGG + chr8.2:10907974-10907993 None:intergenic 30.0%
AGACTAAATCCGAAAAGAAT+TGG + chr8.2:10908205-10908224 None:intergenic 30.0%
ATAAACCACAATTGTTGATG+AGG + chr8.2:10907439-10907458 None:intergenic 30.0%
ATCGAAAGGTTTGATAAAGA+AGG - chr8.2:10908270-10908289 MS.gene041551:CDS 30.0%
CCAGATCCAATAATGATAAA+AGG + chr8.2:10907908-10907927 None:intergenic 30.0%
CGCTATTAAAGTTATATCTC+GGG - chr8.2:10908377-10908396 MS.gene041551:CDS 30.0%
GAGATATAACTTTAATAGCG+TGG + chr8.2:10908377-10908396 None:intergenic 30.0%
GCTATTAAAGTTATATCTCG+GGG - chr8.2:10908378-10908397 MS.gene041551:CDS 30.0%
TCGAAAGGTTTGATAAAGAA+GGG - chr8.2:10908271-10908290 MS.gene041551:CDS 30.0%
TGCTACACAAAAATTGTAGT+TGG + chr8.2:10907978-10907997 None:intergenic 30.0%
TTCTTACCAAATCAAAAGCA+GGG + chr8.2:10907739-10907758 None:intergenic 30.0%
! CCTTTTATCATTATTGGATC+TGG - chr8.2:10907905-10907924 MS.gene041551:CDS 30.0%
! CTACAATTTTTGTGTAGCAT+CGG - chr8.2:10907979-10907998 MS.gene041551:CDS 30.0%
!! AATAATCCCTGCTTTTGATT+TGG - chr8.2:10907730-10907749 MS.gene041551:CDS 30.0%
!!! TTTGGCAAAATGGTTTTGAT+GGG + chr8.2:10907614-10907633 None:intergenic 30.0%
AAAGTTTATGCTACGATCTG+CGG - chr8.2:10908108-10908127 MS.gene041551:CDS 35.0%
ACAGTGACAATAATGTCTTG+GGG + chr8.2:10907668-10907687 None:intergenic 35.0%
AGAGAAAAGACTTCTTCCAA+GGG - chr8.2:10908225-10908244 MS.gene041551:CDS 35.0%
ATAAAAGAATCGGGTTTGTG+AGG + chr8.2:10907509-10907528 None:intergenic 35.0%
ATCTGAATCTGAAGAAATGG+TGG + chr8.2:10907393-10907412 None:intergenic 35.0%
ATTAAAGTTATATCTCGGGG+AGG - chr8.2:10908381-10908400 MS.gene041551:CDS 35.0%
CAGATCGTAGCATAAACTTT+GGG + chr8.2:10908108-10908127 None:intergenic 35.0%
CAGGGATTATTTGTTTGTCA+AGG + chr8.2:10907721-10907740 None:intergenic 35.0%
CTTCTTACCAAATCAAAAGC+AGG + chr8.2:10907740-10907759 None:intergenic 35.0%
GACAGTGACAATAATGTCTT+GGG + chr8.2:10907669-10907688 None:intergenic 35.0%
GTAATAGCTCTTTGATCAGA+AGG + chr8.2:10907770-10907789 None:intergenic 35.0%
TAAAAGAATCGGGTTTGTGA+GGG + chr8.2:10907508-10907527 None:intergenic 35.0%
TAGAGAAAAGACTTCTTCCA+AGG - chr8.2:10908224-10908243 MS.gene041551:CDS 35.0%
TCATACCTCATCAACAATTG+TGG - chr8.2:10907431-10907450 MS.gene041551:CDS 35.0%
TGACAGTGACAATAATGTCT+TGG + chr8.2:10907670-10907689 None:intergenic 35.0%
TTTCTTCAAGACACCAACTT+TGG + chr8.2:10908041-10908060 None:intergenic 35.0%
! AGTTGGTGTCTTGAAGAAAT+GGG - chr8.2:10908042-10908061 MS.gene041551:CDS 35.0%
! ATCCGGTATCTTTTATCGAA+AGG - chr8.2:10908256-10908275 MS.gene041551:CDS 35.0%
! TCAATGCAGTGATGAGTTTT+TGG - chr8.2:10908137-10908156 MS.gene041551:CDS 35.0%
! TTATTGGATCTGGTTTGAGA+AGG - chr8.2:10907915-10907934 MS.gene041551:CDS 35.0%
!! AAGTTGGTGTCTTGAAGAAA+TGG - chr8.2:10908041-10908060 MS.gene041551:CDS 35.0%
!! AGTTTTTGGATCAAACAGCT+TGG - chr8.2:10908151-10908170 MS.gene041551:CDS 35.0%
!!! AACGTAACATTTTGGTGATG+AGG + chr8.2:10907345-10907364 None:intergenic 35.0%
!!! ATCTCCTTTTTCAAAACCCA+TGG - chr8.2:10907527-10907546 MS.gene041551:CDS 35.0%
!!! CTTTGGCAAAATGGTTTTGA+TGG + chr8.2:10907615-10907634 None:intergenic 35.0%
!!! GAAACCATGGGTTTTGAAAA+AGG + chr8.2:10907534-10907553 None:intergenic 35.0%
!!! TTGGCAAAATGGTTTTGATG+GGG + chr8.2:10907613-10907632 None:intergenic 35.0%
AAAAGAATCGGGTTTGTGAG+GGG + chr8.2:10907507-10907526 None:intergenic 40.0%
AGATACAATCCATCATTCGC+AGG - chr8.2:10907564-10907583 MS.gene041551:CDS 40.0%
CGAGATCTAGCAATTGAAGT+TGG + chr8.2:10907809-10907828 None:intergenic 40.0%
GCAGATCGTAGCATAAACTT+TGG + chr8.2:10908109-10908128 None:intergenic 40.0%
GGCTGTCACTAAATCTCAAT+GGG - chr8.2:10908012-10908031 MS.gene041551:CDS 40.0%
GTTTGTCAAGGCTTGAACAA+AGG + chr8.2:10907709-10907728 None:intergenic 40.0%
TGGCTGTCACTAAATCTCAA+TGG - chr8.2:10908011-10908030 MS.gene041551:CDS 40.0%
TTGGATCAAACAGCTTGGTT+GGG - chr8.2:10908156-10908175 MS.gene041551:CDS 40.0%
TTGGGATCCTTTATTGCTCA+TGG - chr8.2:10908174-10908193 MS.gene041551:CDS 40.0%
TTTGGATCAAACAGCTTGGT+TGG - chr8.2:10908155-10908174 MS.gene041551:CDS 40.0%
! ATGGCAGCACCAATTCTTTT+CGG - chr8.2:10908193-10908212 MS.gene041551:CDS 40.0%
! ATGGGGTTTGAAACGATGAT+GGG + chr8.2:10907596-10907615 None:intergenic 40.0%
! GTTGGTGTCTTGAAGAAATG+GGG - chr8.2:10908043-10908062 MS.gene041551:CDS 40.0%
!! CTGATGAGTTGTTTCTGCAA+CGG - chr8.2:10908323-10908342 MS.gene041551:CDS 40.0%
!! GATGGATTGTATCTGATCGT+TGG + chr8.2:10907558-10907577 None:intergenic 40.0%
!!! GTAACATTTTGGTGATGAGG+AGG + chr8.2:10907342-10907361 None:intergenic 40.0%
AAGGTCTGTGGAGGAGATAA+AGG - chr8.2:10907934-10907953 MS.gene041551:CDS 45.0%
AGGAATAGAGAAGAGCTCTG+AGG + chr8.2:10907322-10907341 None:intergenic 45.0%
AGGCTTGAACAAAGGAAACG+AGG + chr8.2:10907701-10907720 None:intergenic 45.0%
AGGTCTGTGGAGGAGATAAA+GGG - chr8.2:10907935-10907954 MS.gene041551:CDS 45.0%
CTGATCGTTGGAGAAACCAT+GGG + chr8.2:10907546-10907565 None:intergenic 45.0%
GGCTTGAACAAAGGAAACGA+GGG + chr8.2:10907700-10907719 None:intergenic 45.0%
TCTCAATGGGATGCCAAAGT+TGG - chr8.2:10908025-10908044 MS.gene041551:CDS 45.0%
TCTGATCGTTGGAGAAACCA+TGG + chr8.2:10907547-10907566 None:intergenic 45.0%
TGGAGGAGATAAAGGGGTTA+GGG - chr8.2:10907942-10907961 MS.gene041551:CDS 45.0%
TTCCAAGGGCTTCAGTTATC+CGG - chr8.2:10908239-10908258 MS.gene041551:CDS 45.0%
! AATGGTGGTGCTGAAAGAGA+AGG + chr8.2:10907378-10907397 None:intergenic 45.0%
! ATCTGGTTTGAGAAGGTCTG+TGG - chr8.2:10907922-10907941 MS.gene041551:CDS 45.0%
! ATGGTGGTGCTGAAAGAGAA+GGG + chr8.2:10907377-10907396 None:intergenic 45.0%
! GATGGGGTTTGAAACGATGA+TGG + chr8.2:10907597-10907616 None:intergenic 45.0%
!! AATAGAGAAGAGCTCTGAGG+CGG + chr8.2:10907319-10907338 None:intergenic 45.0%
!! GAAGCTTTGAGAGCATCTTG+TGG + chr8.2:10907464-10907483 None:intergenic 45.0%
!! TGTAGCATCGGCGACAAAAA+TGG - chr8.2:10907991-10908010 MS.gene041551:CDS 45.0%
GGTCTGTGGAGGAGATAAAG+GGG - chr8.2:10907936-10907955 MS.gene041551:CDS 50.0%
GTGGAGGAGATAAAGGGGTT+AGG - chr8.2:10907941-10907960 MS.gene041551:CDS 50.0%
TACCGGATAACTGAAGCCCT+TGG + chr8.2:10908244-10908263 None:intergenic 50.0%
TGGTTTGAGAAGGTCTGTGG+AGG - chr8.2:10907925-10907944 MS.gene041551:CDS 50.0%
! GGTGCTGCCATGAGCAATAA+AGG + chr8.2:10908184-10908203 None:intergenic 50.0%
!! GGGTTTGAAACGATGATGGG+TGG + chr8.2:10907593-10907612 None:intergenic 50.0%
GGGTGGAATCCTGCGAATGA+TGG + chr8.2:10907576-10907595 None:intergenic 55.0%
!! GTCTTGGGGAGAAGCACCTT+TGG + chr8.2:10907654-10907673 None:intergenic 55.0%


Chromosome Type Strat End Strand Name
chr8.2 gene 10907302 10908435 10907302 ID=MS.gene041551
chr8.2 mRNA 10907302 10908435 10907302 ID=MS.gene041551.t1;Parent=MS.gene041551
chr8.2 exon 10907302 10908435 10907302 ID=MS.gene041551.t1.exon1;Parent=MS.gene041551.t1
chr8.2 CDS 10907302 10908435 10907302 ID=cds.MS.gene041551.t1;Parent=MS.gene041551.t1
Gene Sequence

>MS.gene041551

ATGTTTCATTGTCACCGCCTCAGAGCTCTTCTCTATTCCTCCTCATCACCAAAATGTTACGTTACTCTAAAACCCTTCTCTTTCAGCACCACCATTTCTTCAGATTCAGATAAACAATCTTTCACAGTTTCATACCTCATCAACAATTGTGGTTTATCTCCACAAGATGCTCTCAAAGCTTCTAAACGTTTTCATTTCAATACCCCTCACAAACCCGATTCTTTTATCTCCTTTTTCAAAACCCATGGTTTCTCCAACGATCAGATACAATCCATCATTCGCAGGATTCCACCCATCATCGTTTCAAACCCCATCAAAACCATTTTGCCAAAGTTTCAATTTTTAGCTTCCAAAGGTGCTTCTCCCCAAGACATTATTGTCACTGTCACTAAAAGCCCTCGTTTCCTTTGTTCAAGCCTTGACAAACAAATAATCCCTGCTTTTGATTTGGTAAGAAGTTTCTGTCCTTCTGATCAAAGAGCTATTACTATAATAAATTCTTATCCAACTTCAATTGCTAGATCTCGCATGAAACCAAATGTTCATTTTTTGCTTGATTTTGGAGTCAGTCGCGCAAGTATTTACAATTTGCTTAGGACTAGTCCTTTTATCATTATTGGATCTGGTTTGAGAAGGTCTGTGGAGGAGATAAAGGGGTTAGGGTTTGAACCTTCCAACTACAATTTTTGTGTAGCATCGGCGACAAAAATGGCTGTCACTAAATCTCAATGGGATGCCAAAGTTGGTGTCTTGAAGAAATGGGGCTTGTCCCAAGATTCAATTTTACATGCATATAAAAAGAACCCAAAGTTTATGCTACGATCTGCGGACAAACTCAATGCAGTGATGAGTTTTTGGATCAAACAGCTTGGTTGGGATCCTTTATTGCTCATGGCAGCACCAATTCTTTTCGGATTTAGTCTAGAGAAAAGACTTCTTCCAAGGGCTTCAGTTATCCGGTATCTTTTATCGAAAGGTTTGATAAAGAAGGGTGCTAGCTTAACTGCACCATTTATTTTGACTGATGAGTTGTTTCTGCAACGGTTTGTGAATCGTTTTGAAGAAGAAGTATCCACGCTATTAAAGTTATATCTCGGGGAGGATGCTAGCATCTGCTGCTTAGATAAGTTGTGA
Protein sequence

>MS.gene041551.t1

MFHCHRLRALLYSSSSPKCYVTLKPFSFSTTISSDSDKQSFTVSYLINNCGLSPQDALKASKRFHFNTPHKPDSFISFFKTHGFSNDQIQSIIRRIPPIIVSNPIKTILPKFQFLASKGASPQDIIVTVTKSPRFLCSSLDKQIIPAFDLVRSFCPSDQRAITIINSYPTSIARSRMKPNVHFLLDFGVSRASIYNLLRTSPFIIIGSGLRRSVEEIKGLGFEPSNYNFCVASATKMAVTKSQWDAKVGVLKKWGLSQDSILHAYKKNPKFMLRSADKLNAVMSFWIKQLGWDPLLLMAAPILFGFSLEKRLLPRASVIRYLLSKGLIKKGASLTAPFILTDELFLQRFVNRFEEEVSTLLKLYLGEDASICCLDKL