AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene041552

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene041552.t1 MTR_4g120380 77.807 374 75 4 1 368 1 372 0.0 578
MS.gene041552.t1 MTR_4g120380 79.545 352 64 4 1 346 1 350 0.0 554
MS.gene041552.t1 MTR_4g119580 72.507 371 98 3 1 367 1 371 0.0 509
MS.gene041552.t1 MTR_2g436460 50.606 330 162 1 37 365 44 373 4.19e-112 332
MS.gene041552.t1 MTR_4g119570 64.542 251 56 1 117 367 13 230 2.46e-109 320
MS.gene041552.t1 MTR_2g437260 46.356 343 182 1 26 366 22 364 9.26e-109 324
MS.gene041552.t1 MTR_4g119550 50.000 336 163 2 32 366 47 378 3.34e-108 322
MS.gene041552.t1 MTR_2g437040 48.529 340 170 4 30 366 31 368 2.20e-107 320
MS.gene041552.t1 MTR_2g436440 44.920 374 198 2 1 366 1 374 8.98e-106 316
MS.gene041552.t1 MTR_2g437030 48.077 364 185 2 7 366 91 454 6.14e-105 317
MS.gene041552.t1 MTR_2g437120 49.267 341 159 4 35 366 46 381 1.00e-103 312
MS.gene041552.t1 MTR_2g076320 48.235 340 163 3 35 365 45 380 1.78e-102 308
MS.gene041552.t1 MTR_2g437960 48.204 334 160 3 42 366 55 384 1.97e-102 308
MS.gene041552.t1 MTR_2g437960 48.204 334 160 3 42 366 55 384 4.01e-102 308
MS.gene041552.t1 MTR_2g437990 48.512 336 169 2 35 366 45 380 4.04e-102 308
MS.gene041552.t1 MTR_2g438010 48.071 337 170 2 35 366 65 401 6.53e-102 307
MS.gene041552.t1 MTR_2g436400 45.748 341 182 2 28 366 36 375 1.06e-101 305
MS.gene041552.t1 MTR_2g437060 44.054 370 193 5 4 366 21 383 1.51e-101 306
MS.gene041552.t1 MTR_2g437130 45.109 368 194 3 1 366 8 369 5.07e-101 304
MS.gene041552.t1 MTR_2g437080 46.687 332 175 1 37 366 37 368 1.53e-100 303
MS.gene041552.t1 MTR_2g437160 46.939 343 178 2 28 366 51 393 1.57e-99 301
MS.gene041552.t1 MTR_2g437200 43.915 378 174 2 27 366 19 396 1.66e-99 300
MS.gene041552.t1 MTR_2g437020 45.902 366 188 5 5 366 9 368 1.19e-98 298
MS.gene041552.t1 MTR_2g437100 48.795 332 163 3 42 366 62 393 8.12e-98 296
MS.gene041552.t1 MTR_2g437150 48.083 339 169 3 35 366 50 388 1.44e-97 296
MS.gene041552.t1 MTR_2g437170 47.788 339 170 3 35 366 50 388 5.09e-97 295
MS.gene041552.t1 MTR_2g437240 43.411 387 166 5 27 369 22 399 1.56e-93 286
MS.gene041552.t1 MTR_2g437180 46.505 329 169 3 42 365 51 377 1.25e-92 283
MS.gene041552.t1 MTR_2g438020 43.251 363 168 2 42 366 73 435 1.37e-89 278
MS.gene041552.t1 MTR_2g437940 44.954 327 153 3 42 366 51 352 9.36e-87 267
MS.gene041552.t1 MTR_2g019810 42.560 336 179 4 38 366 29 357 6.19e-85 262
MS.gene041552.t1 MTR_2g019840 41.333 375 205 6 1 366 1 369 8.90e-85 262
MS.gene041552.t1 MTR_3g450500 32.162 370 245 2 4 367 2 371 5.05e-61 201
MS.gene041552.t1 MTR_4g007490 33.427 356 223 5 22 366 16 368 5.39e-61 201
MS.gene041552.t1 MTR_2g437090 54.545 154 70 0 213 366 3 156 5.81e-52 171
MS.gene041552.t1 MTR_2g437160 49.704 169 85 0 198 366 134 302 1.40e-51 174
MS.gene041552.t1 MTR_2g437160 45.055 91 48 1 28 116 51 141 4.15e-15 75.9
MS.gene041552.t1 MTR_8g080990 27.596 337 240 3 35 367 37 373 1.28e-35 134
MS.gene041552.t1 MTR_2g436370 41.111 180 94 5 4 176 15 189 9.88e-35 127
MS.gene041552.t1 MTR_8g081000 24.926 337 249 3 35 367 50 386 1.12e-30 121
MS.gene041552.t1 MTR_8g081000 24.926 337 249 3 35 367 50 386 1.44e-30 120
MS.gene041552.t1 MTR_8g081000 24.926 337 249 3 35 367 50 386 1.60e-30 120
MS.gene041552.t1 MTR_4g119615 86.275 51 7 0 310 360 26 76 3.60e-23 92.8
MS.gene041552.t1 MTR_2g436380 40.000 105 45 3 213 316 3 90 1.23e-14 73.9
MS.gene041552.t1 MTR_4g049400 37.600 125 69 3 22 137 25 149 2.35e-13 69.3
MS.gene041552.t1 MTR_3g085240 30.508 177 108 3 40 215 57 219 1.17e-11 64.7
MS.gene041552.t1 MTR_8g012210 22.896 297 204 10 84 366 63 348 3.34e-11 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene041552.t1 AT5G07900 34.036 332 213 3 42 367 70 401 9.28e-64 209
MS.gene041552.t1 AT1G21150 30.606 330 223 3 40 363 55 384 1.59e-46 163
MS.gene041552.t1 AT1G21150 30.606 330 223 3 40 363 119 448 3.44e-46 164
MS.gene041552.t1 AT1G21150 30.675 326 220 3 44 363 23 348 5.92e-46 161
MS.gene041552.t1 AT1G61980 29.076 368 220 7 40 367 51 417 7.89e-44 157
MS.gene041552.t1 AT1G61980 29.076 368 220 7 40 367 51 417 7.89e-44 157
MS.gene041552.t1 AT1G61980 29.076 368 220 7 40 367 51 417 7.89e-44 157
MS.gene041552.t1 AT1G62120 27.248 367 226 6 42 367 57 423 5.21e-42 152
MS.gene041552.t1 AT1G61970 26.703 367 226 8 42 367 53 417 6.36e-40 146
MS.gene041552.t1 AT1G61970 26.703 367 226 8 42 367 53 417 6.36e-40 146
MS.gene041552.t1 AT1G61970 26.703 367 226 8 42 367 53 417 6.36e-40 146
MS.gene041552.t1 AT1G61970 26.703 367 226 8 42 367 53 417 6.36e-40 146
MS.gene041552.t1 AT1G61970 26.703 367 226 8 42 367 53 417 6.36e-40 146
MS.gene041552.t1 AT1G61970 26.703 367 226 8 42 367 53 417 6.36e-40 146
MS.gene041552.t1 AT1G61970 26.703 367 226 8 42 367 53 417 6.36e-40 146
MS.gene041552.t1 AT1G61990 27.989 368 219 7 42 370 53 413 1.71e-39 145
MS.gene041552.t1 AT1G61990 27.989 368 219 7 42 370 53 413 1.71e-39 145
MS.gene041552.t1 AT3G46950 31.667 240 159 4 42 280 53 288 9.95e-33 127
MS.gene041552.t1 AT5G64950 28.329 353 240 5 26 366 25 376 1.05e-32 126
MS.gene041552.t1 AT1G62085 29.545 264 178 3 25 280 34 297 1.49e-29 119
MS.gene041552.t1 AT1G62085 29.508 122 83 2 249 367 336 457 7.42e-11 63.9
MS.gene041552.t1 AT1G62085 29.545 264 178 3 25 280 34 297 1.49e-29 119
MS.gene041552.t1 AT1G62085 29.508 122 83 2 249 367 336 457 7.42e-11 63.9
MS.gene041552.t1 AT1G62150 23.896 385 217 8 42 351 59 442 6.42e-29 117
MS.gene041552.t1 AT1G62010 23.662 355 220 8 57 368 56 402 9.35e-28 113
MS.gene041552.t1 AT1G62110 26.692 266 192 2 23 285 34 299 1.45e-27 113
MS.gene041552.t1 AT1G62110 22.488 209 141 5 175 368 256 458 1.73e-12 68.9
MS.gene041552.t1 AT1G61960 28.395 243 168 4 42 280 53 293 1.28e-25 107
MS.gene041552.t1 AT1G61960 27.869 122 85 1 249 367 332 453 1.95e-11 65.5
MS.gene041552.t1 AT1G56380 24.654 361 220 10 44 357 30 385 6.88e-25 105
MS.gene041552.t1 AT1G56380 24.654 361 220 10 44 357 19 374 8.47e-25 104
MS.gene041552.t1 AT5G23930 28.346 254 169 5 25 270 32 280 1.15e-24 105

Find 105 sgRNAs with CRISPR-Local

Find 134 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGGAGGAGATTAAGGAATT+AGG 0.141632 8.2:+10902810 MS.gene041552:CDS
TTGTTCTGAAGATGATATTT+TGG 0.214482 8.2:+10902935 MS.gene041552:CDS
AAAGGCTTTGGAGGAGATTA+AGG 0.223358 8.2:+10902803 MS.gene041552:CDS
ATGCTCTACTGATTTGAAAA+AGG 0.232177 8.2:+10902785 MS.gene041552:CDS
AAAGGTAACATTTCGGGGTT+TGG 0.265770 8.2:-10902206 None:intergenic
GGACTTGGTGACAGCCCTTT+TGG 0.271549 8.2:-10902874 None:intergenic
TTGGGATCCTTTATTGCTCC+TGG 0.276197 8.2:+10903043 MS.gene041552:CDS
AACTCGTCCTTCAAATAAAA+TGG 0.276985 8.2:-10903179 None:intergenic
CAAAAGTATGTGAAACGTTT+TGG 0.285164 8.2:+10903209 MS.gene041552:CDS
AAGGTAACATTTCGGGGTTT+GGG 0.285785 8.2:-10902205 None:intergenic
CATGCTATTAAAGCTATATC+AGG 0.320327 8.2:+10903244 MS.gene041552:CDS
CTTTGGCAAAATTGATTTGA+TGG 0.324194 8.2:-10902481 None:intergenic
TGGAGGAGATTAAGGAATTA+GGG 0.324678 8.2:+10902811 MS.gene041552:CDS
AGTGGGTTCGGTGAAGAAAA+AGG 0.366164 8.2:-10902224 None:intergenic
GTCTTGGGGAGAAGCACCTT+TGG 0.383783 8.2:-10902520 None:intergenic
AACGGTGGCAACAATGTCTT+GGG 0.392461 8.2:-10902535 None:intergenic
GAGGCTTGAAGCAAGGAAAC+GGG 0.394445 8.2:-10902568 None:intergenic
GTATCTTCTTTCCAAAGGTT+TGG 0.398152 8.2:+10903130 MS.gene041552:CDS
AGTTGATGCCTTGAAGAGTT+GGG 0.411739 8.2:+10902911 MS.gene041552:CDS
GATAACGGAGTCGGGTTTGT+TGG 0.416971 8.2:-10902376 None:intergenic
CTTCTTACCAATTCAAAAGA+AGG 0.421065 8.2:-10902606 None:intergenic
TGGGATCCTTTATTGCTCCT+GGG 0.425385 8.2:+10903044 MS.gene041552:CDS
TTGGGTCAAACAATTTGGTT+GGG 0.428878 8.2:+10903025 MS.gene041552:CDS
TGCGAATGATGGTTTGTATC+TGG 0.432299 8.2:-10902431 None:intergenic
TTGTTGGTGAGGTAGGAAAC+TGG 0.434401 8.2:-10902294 None:intergenic
GTGTGGCATTATTGGCCAAA+AGG 0.435093 8.2:+10902859 MS.gene041552:CDS
TTTGGCATCCCATTGGGACT+TGG 0.436785 8.2:-10902889 None:intergenic
ACTCTTCAAGGCATCAACTT+TGG 0.437967 8.2:-10902907 None:intergenic
ATCCTCCTTCACCAAACCTT+TGG 0.439740 8.2:-10903141 None:intergenic
ATAACGGAGTCGGGTTTGTT+GGG 0.446265 8.2:-10902375 None:intergenic
GGAGACCGTAGCATTAAGTT+AGG 0.446307 8.2:-10902975 None:intergenic
AACCTTTGGAAAGAAGATAC+TGG 0.447858 8.2:-10903127 None:intergenic
ATCAACTTTGGCATCCCATT+GGG 0.451567 8.2:-10902895 None:intergenic
TAACTTAATGCTACGGTCTC+CGG 0.453116 8.2:+10902977 MS.gene041552:CDS
AGAACAACCCCAACTCTTCA+AGG 0.455014 8.2:-10902919 None:intergenic
TTTGGCAAAATTGATTTGAT+GGG 0.461357 8.2:-10902480 None:intergenic
CGAGGCTTGAAGCAAGGAAA+CGG 0.463064 8.2:-10902569 None:intergenic
AAGCGAGAATCACGAATTGT+AGG 0.464569 8.2:-10902678 None:intergenic
GTCCAGTATCTTCTTTCCAA+AGG 0.465341 8.2:+10903125 MS.gene041552:CDS
TGGAGAAGTAGGTGAAAGAG+TGG 0.470779 8.2:-10902242 None:intergenic
GGCTGTCACCAAGTCCCAAT+GGG 0.471957 8.2:+10902881 MS.gene041552:CDS
AGTAGGTGAAAGAGTGGGTT+CGG 0.474844 8.2:-10902236 None:intergenic
CATCAACTTTGGCATCCCAT+TGG 0.475903 8.2:-10902896 None:intergenic
ATACTAAATCCGAAAAGAAC+GGG 0.477670 8.2:-10903071 None:intergenic
TAACGGTGGCAACAATGTCT+TGG 0.479132 8.2:-10902536 None:intergenic
AGCGAGAATCACGAATTGTA+GGG 0.480852 8.2:-10902677 None:intergenic
AGTGTTGAAACGGAGTCGTT+TGG 0.481325 8.2:-10902352 None:intergenic
TCGGATTTAGTATACAGAAA+AGG 0.482494 8.2:+10903081 MS.gene041552:CDS
TTGGGGAGAAGCACCTTTGG+AGG 0.490963 8.2:-10902517 None:intergenic
TTTGGGTCAAACAATTTGGT+TGG 0.492308 8.2:+10903024 MS.gene041552:CDS
AAGTTGATGCCTTGAAGAGT+TGG 0.496376 8.2:+10902910 MS.gene041552:CDS
GGTGTGCCCAGGAGCAATAA+AGG 0.500318 8.2:-10903050 None:intergenic
AGGGTCTAGTAGTAAGCAAA+TGG 0.503507 8.2:-10902755 None:intergenic
CGAAAAGAACGGGTGTGCCC+AGG 0.505305 8.2:-10903061 None:intergenic
GTTTGTTGGGAGTGTTGAAA+CGG 0.507083 8.2:-10902362 None:intergenic
AGGTAACATTTCGGGGTTTG+GGG 0.510986 8.2:-10902204 None:intergenic
ATCACCGCATTGAGTTTGTC+CGG 0.516458 8.2:-10902996 None:intergenic
CTGATATAGCTTTAATAGCA+TGG 0.517550 8.2:-10903243 None:intergenic
TGGAGATAAACCGCAGTTGT+TGG 0.517833 8.2:-10902310 None:intergenic
TTCTTACCAATTCAAAAGAA+GGG 0.521054 8.2:-10902605 None:intergenic
TGTGGCATTATTGGCCAAAA+GGG 0.530442 8.2:+10902860 MS.gene041552:CDS
CGATGGAATCCTGCGAATGA+TGG 0.539386 8.2:-10902442 None:intergenic
TTCCAAAGGTTTGGTGAAGG+AGG 0.548687 8.2:+10903139 MS.gene041552:CDS
ATGTGAAAGGGTGGAGAAGT+AGG 0.549547 8.2:-10902253 None:intergenic
GGGCTGTCACCAAGTCCCAA+TGG 0.553920 8.2:+10902880 MS.gene041552:CDS
GACAACCTAACTTAATGCTA+CGG 0.560893 8.2:+10902970 MS.gene041552:CDS
ATTGTTGATCTGAATGTGAA+AGG 0.561922 8.2:-10902266 None:intergenic
TATACTAAATCCGAAAAGAA+CGG 0.562603 8.2:-10903072 None:intergenic
ATGTTTCATTATCACCGCCT+CGG 0.567337 8.2:+10902168 MS.gene041552:CDS
GTAATAGCTTTATGATCAGA+AGG 0.568712 8.2:-10902636 None:intergenic
ACCGCAGTTGTTGGTGAGGT+AGG 0.574996 8.2:-10902301 None:intergenic
GGGTTTGAAACGATGAGCGA+TGG 0.579479 8.2:-10902459 None:intergenic
TCTTTCCAAAGGTTTGGTGA+AGG 0.579695 8.2:+10903136 MS.gene041552:CDS
TTGGCAAAATTGATTTGATG+GGG 0.581662 8.2:-10902479 None:intergenic
AGGCTTGAAGCAAGGAAACG+GGG 0.582746 8.2:-10902567 None:intergenic
AGATACAAACCATCATTCGC+AGG 0.586629 8.2:+10902433 MS.gene041552:CDS
ATCAGTAGAGCATATTGTAG+AGG 0.594418 8.2:-10902775 None:intergenic
TTAAAGCTATATCAGGGAGG+AGG 0.595436 8.2:+10903251 MS.gene041552:CDS
TTGTTGATCTGAATGTGAAA+GGG 0.596672 8.2:-10902265 None:intergenic
ATGCTATTAAAGCTATATCA+GGG 0.602620 8.2:+10903245 MS.gene041552:CDS
TGTTGGTGAGGTAGGAAACT+GGG 0.604893 8.2:-10902293 None:intergenic
TTGATCTGAATGTGAAAGGG+TGG 0.604993 8.2:-10902262 None:intergenic
GATGCTTTGAGAGCGTCTTG+TGG 0.606368 8.2:-10902330 None:intergenic
TACAGAAAAGGCTTATTCCG+AGG 0.607107 8.2:+10903093 MS.gene041552:CDS
ACAGAAAAGGCTTATTCCGA+GGG 0.609614 8.2:+10903094 MS.gene041552:CDS
AAGGGATTATGTACTTCTCG+AGG 0.610017 8.2:-10902587 None:intergenic
TCAGTAGAGCATATTGTAGA+GGG 0.610595 8.2:-10902774 None:intergenic
TCTGGTGATCGGAGAAACCG+TGG 0.611970 8.2:-10902413 None:intergenic
TACTGGACAACAGAAGCCCT+CGG 0.620230 8.2:-10903110 None:intergenic
GGAGAAGTAGGTGAAAGAGT+GGG 0.620482 8.2:-10902241 None:intergenic
GATGGTTTGTATCTGGTGAT+CGG 0.623257 8.2:-10902424 None:intergenic
GTTGATGCCTTGAAGAGTTG+GGG 0.626644 8.2:+10902912 MS.gene041552:CDS
ACTTCTCGAGGCTTGAAGCA+AGG 0.627237 8.2:-10902575 None:intergenic
CGAGAATCACGAATTGTAGG+GGG 0.639288 8.2:-10902675 None:intergenic
TCCTACCTCACCAACAACTG+CGG 0.644241 8.2:+10902300 MS.gene041552:CDS
ATAAACCGCAGTTGTTGGTG+AGG 0.646663 8.2:-10902305 None:intergenic
GGCTTGAAGCAAGGAAACGG+GGG 0.647192 8.2:-10902566 None:intergenic
GCGAGAATCACGAATTGTAG+GGG 0.656253 8.2:-10902676 None:intergenic
GGTAACATTTCGGGGTTTGG+GGG 0.695526 8.2:-10902203 None:intergenic
GGTTGAGAAGAGCTCCGAGG+CGG 0.704891 8.2:-10902182 None:intergenic
CTGGTGATCGGAGAAACCGT+GGG 0.719461 8.2:-10902412 None:intergenic
GAGAATCACGAATTGTAGGG+GGG 0.721144 8.2:-10902674 None:intergenic
CTATTAAAGCTATATCAGGG+AGG 0.766585 8.2:+10903248 MS.gene041552:CDS
ACGGTGGCAACAATGTCTTG+GGG 0.780918 8.2:-10902534 None:intergenic
GTCTCCGGACAAACTCAATG+CGG 0.781187 8.2:+10902992 MS.gene041552:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
! ACACAAAAATTGTATTTGGA+AGG - chr8.2:10902843-10902862 None:intergenic 25.0%
! ATGCTATTAAAGCTATATCA+GGG + chr8.2:10903245-10903264 MS.gene041552:CDS 25.0%
! TATACTAAATCCGAAAAGAA+CGG - chr8.2:10903075-10903094 None:intergenic 25.0%
! TCAAGCAAAAATTGAAGATT+TGG - chr8.2:10902708-10902727 None:intergenic 25.0%
! TGAAGAAAAAGGTAACATTT+CGG - chr8.2:10902216-10902235 None:intergenic 25.0%
! TTCTTACCAATTCAAAAGAA+GGG - chr8.2:10902608-10902627 None:intergenic 25.0%
!! CTTCAATTTTTGCTTGATTT+TGG + chr8.2:10902711-10902730 MS.gene041552:CDS 25.0%
!! TTCCAAATACAATTTTTGTG+TGG + chr8.2:10902842-10902861 MS.gene041552:CDS 25.0%
!!! TGTTCTGAAGATGATATTTT+GGG + chr8.2:10902936-10902955 MS.gene041552:CDS 25.0%
!!! TTGTTCTGAAGATGATATTT+TGG + chr8.2:10902935-10902954 MS.gene041552:CDS 25.0%
!!! TTTGGCAAAATTGATTTGAT+GGG - chr8.2:10902483-10902502 None:intergenic 25.0%
AACTCGTCCTTCAAATAAAA+TGG - chr8.2:10903182-10903201 None:intergenic 30.0%
AAGAAAAAGGTAACATTTCG+GGG - chr8.2:10902214-10902233 None:intergenic 30.0%
ATACTAAATCCGAAAAGAAC+GGG - chr8.2:10903074-10903093 None:intergenic 30.0%
ATTGTTGATCTGAATGTGAA+AGG - chr8.2:10902269-10902288 None:intergenic 30.0%
CATGCTATTAAAGCTATATC+AGG + chr8.2:10903244-10903263 MS.gene041552:CDS 30.0%
CTTCTTACCAATTCAAAAGA+AGG - chr8.2:10902609-10902628 None:intergenic 30.0%
GAAGAAAAAGGTAACATTTC+GGG - chr8.2:10902215-10902234 None:intergenic 30.0%
GAGGCTAAAAATTGAAACTT+TGG - chr8.2:10902501-10902520 None:intergenic 30.0%
TCGGATTTAGTATACAGAAA+AGG + chr8.2:10903081-10903100 MS.gene041552:CDS 30.0%
TGCCACACAAAAATTGTATT+TGG - chr8.2:10902847-10902866 None:intergenic 30.0%
TTGTTGATCTGAATGTGAAA+GGG - chr8.2:10902268-10902287 None:intergenic 30.0%
! CAATTTTTGTGTGGCATTAT+TGG + chr8.2:10902851-10902870 MS.gene041552:CDS 30.0%
! CATAATCCCTTCTTTTGAAT+TGG + chr8.2:10902599-10902618 MS.gene041552:CDS 30.0%
!! AACTGCACCATTTTATTTGA+AGG + chr8.2:10903172-10903191 MS.gene041552:CDS 30.0%
!! ATGCTCTACTGATTTGAAAA+AGG + chr8.2:10902785-10902804 MS.gene041552:CDS 30.0%
!! CAAAAGTATGTGAAACGTTT+TGG + chr8.2:10903209-10903228 MS.gene041552:CDS 30.0%
!! CTGATATAGCTTTAATAGCA+TGG - chr8.2:10903246-10903265 None:intergenic 30.0%
!! CTTTGGCAAAATTGATTTGA+TGG - chr8.2:10902484-10902503 None:intergenic 30.0%
!! GTAATAGCTTTATGATCAGA+AGG - chr8.2:10902639-10902658 None:intergenic 30.0%
!! TACTGATTTGAAAAAGGCTT+TGG + chr8.2:10902791-10902810 MS.gene041552:CDS 30.0%
!! TTGGCAAAATTGATTTGATG+GGG - chr8.2:10902482-10902501 None:intergenic 30.0%
!!! TTTCAATTTTTAGCCTCCAA+AGG + chr8.2:10902504-10902523 MS.gene041552:CDS 30.0%
ATCAGTAGAGCATATTGTAG+AGG - chr8.2:10902778-10902797 None:intergenic 35.0%
CTATTAAAGCTATATCAGGG+AGG + chr8.2:10903248-10903267 MS.gene041552:CDS 35.0%
GACAACCTAACTTAATGCTA+CGG + chr8.2:10902970-10902989 MS.gene041552:CDS 35.0%
GTATCTTCTTTCCAAAGGTT+TGG + chr8.2:10903130-10903149 MS.gene041552:CDS 35.0%
TCAGTAGAGCATATTGTAGA+GGG - chr8.2:10902777-10902796 None:intergenic 35.0%
TGGAGGAGATTAAGGAATTA+GGG + chr8.2:10902811-10902830 MS.gene041552:CDS 35.0%
TTGGAGGAGATTAAGGAATT+AGG + chr8.2:10902810-10902829 MS.gene041552:CDS 35.0%
TTGGGTCAAACAATTTGGTT+GGG + chr8.2:10903025-10903044 MS.gene041552:CDS 35.0%
TTTGGGTCAAACAATTTGGT+TGG + chr8.2:10903024-10903043 MS.gene041552:CDS 35.0%
! AACCTTTGGAAAGAAGATAC+TGG - chr8.2:10903130-10903149 None:intergenic 35.0%
! AACGTTTCACATACTTTTGC+AGG - chr8.2:10903208-10903227 None:intergenic 35.0%
! TGATTTGAAAAAGGCTTTGG+AGG + chr8.2:10902794-10902813 MS.gene041552:CDS 35.0%
!!! CGTTTTTGGGTCAAACAATT+TGG + chr8.2:10903020-10903039 MS.gene041552:CDS 35.0%
!!! GGTTTTGAAAAAGGCGATAA+CGG - chr8.2:10902394-10902413 None:intergenic 35.0%
AAAGGTAACATTTCGGGGTT+TGG - chr8.2:10902209-10902228 None:intergenic 40.0%
AAGCGAGAATCACGAATTGT+AGG - chr8.2:10902681-10902700 None:intergenic 40.0%
AAGGGATTATGTACTTCTCG+AGG - chr8.2:10902590-10902609 None:intergenic 40.0%
AAGGTAACATTTCGGGGTTT+GGG - chr8.2:10902208-10902227 None:intergenic 40.0%
ACAGAAAAGGCTTATTCCGA+GGG + chr8.2:10903094-10903113 MS.gene041552:CDS 40.0%
AGATACAAACCATCATTCGC+AGG + chr8.2:10902433-10902452 MS.gene041552:CDS 40.0%
AGCGAGAATCACGAATTGTA+GGG - chr8.2:10902680-10902699 None:intergenic 40.0%
AGGGTCTAGTAGTAAGCAAA+TGG - chr8.2:10902758-10902777 None:intergenic 40.0%
ATCAACTTTGGCATCCCATT+GGG - chr8.2:10902898-10902917 None:intergenic 40.0%
ATGTTTCATTATCACCGCCT+CGG + chr8.2:10902168-10902187 MS.gene041552:CDS 40.0%
GTCCAGTATCTTCTTTCCAA+AGG + chr8.2:10903125-10903144 MS.gene041552:CDS 40.0%
TAACTTAATGCTACGGTCTC+CGG + chr8.2:10902977-10902996 MS.gene041552:CDS 40.0%
TACAGAAAAGGCTTATTCCG+AGG + chr8.2:10903093-10903112 MS.gene041552:CDS 40.0%
TGTGGCATTATTGGCCAAAA+GGG + chr8.2:10902860-10902879 MS.gene041552:CDS 40.0%
TTAAAGCTATATCAGGGAGG+AGG + chr8.2:10903251-10903270 MS.gene041552:CDS 40.0%
TTGATCTGAATGTGAAAGGG+TGG - chr8.2:10902265-10902284 None:intergenic 40.0%
! ACTCTTCAAGGCATCAACTT+TGG - chr8.2:10902910-10902929 None:intergenic 40.0%
! AGTTGATGCCTTGAAGAGTT+GGG + chr8.2:10902911-10902930 MS.gene041552:CDS 40.0%
! GATGGTTTGTATCTGGTGAT+CGG - chr8.2:10902427-10902446 None:intergenic 40.0%
! TGCGAATGATGGTTTGTATC+TGG - chr8.2:10902434-10902453 None:intergenic 40.0%
!! AAAGGCTTTGGAGGAGATTA+AGG + chr8.2:10902803-10902822 MS.gene041552:CDS 40.0%
!! AAGTTGATGCCTTGAAGAGT+TGG + chr8.2:10902910-10902929 MS.gene041552:CDS 40.0%
!! GTTTGTTGGGAGTGTTGAAA+CGG - chr8.2:10902365-10902384 None:intergenic 40.0%
!! TCTTTCCAAAGGTTTGGTGA+AGG + chr8.2:10903136-10903155 MS.gene041552:CDS 40.0%
!!! ATCGCCTTTTTCAAAACCCA+CGG + chr8.2:10902396-10902415 MS.gene041552:CDS 40.0%
!!! GAAACCGTGGGTTTTGAAAA+AGG - chr8.2:10902403-10902422 None:intergenic 40.0%
AACGGTGGCAACAATGTCTT+GGG - chr8.2:10902538-10902557 None:intergenic 45.0%
AGAACAACCCCAACTCTTCA+AGG - chr8.2:10902922-10902941 None:intergenic 45.0%
AGGTAACATTTCGGGGTTTG+GGG - chr8.2:10902207-10902226 None:intergenic 45.0%
ATAAACCGCAGTTGTTGGTG+AGG - chr8.2:10902308-10902327 None:intergenic 45.0%
ATCACCGCATTGAGTTTGTC+CGG - chr8.2:10902999-10903018 None:intergenic 45.0%
ATCCTCCTTCACCAAACCTT+TGG - chr8.2:10903144-10903163 None:intergenic 45.0%
ATGTGAAAGGGTGGAGAAGT+AGG - chr8.2:10902256-10902275 None:intergenic 45.0%
CATCAACTTTGGCATCCCAT+TGG - chr8.2:10902899-10902918 None:intergenic 45.0%
CGAGAATCACGAATTGTAGG+GGG - chr8.2:10902678-10902697 None:intergenic 45.0%
GAGAATCACGAATTGTAGGG+GGG - chr8.2:10902677-10902696 None:intergenic 45.0%
GCGAGAATCACGAATTGTAG+GGG - chr8.2:10902679-10902698 None:intergenic 45.0%
GGAGAAGTAGGTGAAAGAGT+GGG - chr8.2:10902244-10902263 None:intergenic 45.0%
GGAGACCGTAGCATTAAGTT+AGG - chr8.2:10902978-10902997 None:intergenic 45.0%
GTGTGGCATTATTGGCCAAA+AGG + chr8.2:10902859-10902878 MS.gene041552:CDS 45.0%
GTTGATGCCTTGAAGAGTTG+GGG + chr8.2:10902912-10902931 MS.gene041552:CDS 45.0%
TAACGGTGGCAACAATGTCT+TGG - chr8.2:10902539-10902558 None:intergenic 45.0%
TGGAGAAGTAGGTGAAAGAG+TGG - chr8.2:10902245-10902264 None:intergenic 45.0%
TGGAGATAAACCGCAGTTGT+TGG - chr8.2:10902313-10902332 None:intergenic 45.0%
TGGGATCCTTTATTGCTCCT+GGG + chr8.2:10903044-10903063 MS.gene041552:CDS 45.0%
TTGGGATCCTTTATTGCTCC+TGG + chr8.2:10903043-10903062 MS.gene041552:CDS 45.0%
! AGTAGGTGAAAGAGTGGGTT+CGG - chr8.2:10902239-10902258 None:intergenic 45.0%
! AGTGTTGAAACGGAGTCGTT+TGG - chr8.2:10902355-10902374 None:intergenic 45.0%
! ATAACGGAGTCGGGTTTGTT+GGG - chr8.2:10902378-10902397 None:intergenic 45.0%
! CAATGCGGTGATGCGTTTTT+GGG + chr8.2:10903007-10903026 MS.gene041552:CDS 45.0%
! TCAATGCGGTGATGCGTTTT+TGG + chr8.2:10903006-10903025 MS.gene041552:CDS 45.0%
! TGTTGGTGAGGTAGGAAACT+GGG - chr8.2:10902296-10902315 None:intergenic 45.0%
! TTGTTGGTGAGGTAGGAAAC+TGG - chr8.2:10902297-10902316 None:intergenic 45.0%
!! AAAAAGGCGATAACGGAGTC+GGG - chr8.2:10902387-10902406 None:intergenic 45.0%
!! AGTGGGTTCGGTGAAGAAAA+AGG - chr8.2:10902227-10902246 None:intergenic 45.0%
!! GAAAAAGGCGATAACGGAGT+CGG - chr8.2:10902388-10902407 None:intergenic 45.0%
!! TTCCAAAGGTTTGGTGAAGG+AGG + chr8.2:10903139-10903158 MS.gene041552:CDS 45.0%
ACGGTGGCAACAATGTCTTG+GGG - chr8.2:10902537-10902556 None:intergenic 50.0%
ACTTCTCGAGGCTTGAAGCA+AGG - chr8.2:10902578-10902597 None:intergenic 50.0%
AGGCTTGAAGCAAGGAAACG+GGG - chr8.2:10902570-10902589 None:intergenic 50.0%
CGAGGCTTGAAGCAAGGAAA+CGG - chr8.2:10902572-10902591 None:intergenic 50.0%
CGATGGAATCCTGCGAATGA+TGG - chr8.2:10902445-10902464 None:intergenic 50.0%
GAAACGGGGGCTTCTAGTAA+CGG - chr8.2:10902556-10902575 None:intergenic 50.0%
GAGGCTTGAAGCAAGGAAAC+GGG - chr8.2:10902571-10902590 None:intergenic 50.0%
GGTAACATTTCGGGGTTTGG+GGG - chr8.2:10902206-10902225 None:intergenic 50.0%
GTCTCCGGACAAACTCAATG+CGG + chr8.2:10902992-10903011 MS.gene041552:CDS 50.0%
TACTGGACAACAGAAGCCCT+CGG - chr8.2:10903113-10903132 None:intergenic 50.0%
TCCTACCTCACCAACAACTG+CGG + chr8.2:10902300-10902319 MS.gene041552:CDS 50.0%
TTTGGCATCCCATTGGGACT+TGG - chr8.2:10902892-10902911 None:intergenic 50.0%
! GGGTTTGAAACGATGAGCGA+TGG - chr8.2:10902462-10902481 None:intergenic 50.0%
!! GATAACGGAGTCGGGTTTGT+TGG - chr8.2:10902379-10902398 None:intergenic 50.0%
!! GATGCTTTGAGAGCGTCTTG+TGG - chr8.2:10902333-10902352 None:intergenic 50.0%
CTGGTGATCGGAGAAACCGT+GGG - chr8.2:10902415-10902434 None:intergenic 55.0%
GGCTGTCACCAAGTCCCAAT+GGG + chr8.2:10902881-10902900 MS.gene041552:CDS 55.0%
GGCTTGAAGCAAGGAAACGG+GGG - chr8.2:10902569-10902588 None:intergenic 55.0%
GGTGTGCCCAGGAGCAATAA+AGG - chr8.2:10903053-10903072 None:intergenic 55.0%
TCTGGTGATCGGAGAAACCG+TGG - chr8.2:10902416-10902435 None:intergenic 55.0%
! ACCGCAGTTGTTGGTGAGGT+AGG - chr8.2:10902304-10902323 None:intergenic 55.0%
! CTGGGCACACCCGTTCTTTT+CGG + chr8.2:10903062-10903081 MS.gene041552:CDS 55.0%
!! GTCTTGGGGAGAAGCACCTT+TGG - chr8.2:10902523-10902542 None:intergenic 55.0%
!! TTGGGGAGAAGCACCTTTGG+AGG - chr8.2:10902520-10902539 None:intergenic 55.0%
!!! GGACTTGGTGACAGCCCTTT+TGG - chr8.2:10902877-10902896 None:intergenic 55.0%
ACGGGGGCTTCTAGTAACGG+TGG - chr8.2:10902553-10902572 None:intergenic 60.0%
CGAAAAGAACGGGTGTGCCC+AGG - chr8.2:10903064-10903083 None:intergenic 60.0%
GGGCTGTCACCAAGTCCCAA+TGG + chr8.2:10902880-10902899 MS.gene041552:CDS 60.0%
GGTTGAGAAGAGCTCCGAGG+CGG - chr8.2:10902185-10902204 None:intergenic 60.0%
GGGGGTTGAGAAGAGCTCCG+AGG - chr8.2:10902188-10902207 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr8.2 gene 10902168 10903280 10902168 ID=MS.gene041552
chr8.2 mRNA 10902168 10903280 10902168 ID=MS.gene041552.t1;Parent=MS.gene041552
chr8.2 exon 10902168 10903280 10902168 ID=MS.gene041552.t1.exon1;Parent=MS.gene041552.t1
chr8.2 CDS 10902168 10903280 10902168 ID=cds.MS.gene041552.t1;Parent=MS.gene041552.t1
Gene Sequence

>MS.gene041552

ATGTTTCATTATCACCGCCTCGGAGCTCTTCTCAACCCCCAAACCCCGAAATGTTACCTTTTTCTTCACCGAACCCACTCTTTCACCTACTTCTCCACCCTTTCACATTCAGATCAACAATGTTTCCCAGTTTCCTACCTCACCAACAACTGCGGTTTATCTCCACAAGACGCTCTCAAAGCATCCAAACGACTCCGTTTCAACACTCCCAACAAACCCGACTCCGTTATCGCCTTTTTCAAAACCCACGGTTTCTCCGATCACCAGATACAAACCATCATTCGCAGGATTCCATCGCTCATCGTTTCAAACCCCATCAAATCAATTTTGCCAAAGTTTCAATTTTTAGCCTCCAAAGGTGCTTCTCCCCAAGACATTGTTGCCACCGTTACTAGAAGCCCCCGTTTCCTTGCTTCAAGCCTCGAGAAGTACATAATCCCTTCTTTTGAATTGGTAAGAAGTTTTTGTCCTTCTGATCATAAAGCTATTACTTCAATTATCGTTTGCCCCCCTACAATTCGTGATTCTCGCTTGAAACCAAATCTTCAATTTTTGCTTGATTTTGGTGTCACTCGTTCAAGTATTTACCATTTGCTTACTACTAGACCCTCTACAATATGCTCTACTGATTTGAAAAAGGCTTTGGAGGAGATTAAGGAATTAGGGTTTCAACCTTCCAAATACAATTTTTGTGTGGCATTATTGGCCAAAAGGGCTGTCACCAAGTCCCAATGGGATGCCAAAGTTGATGCCTTGAAGAGTTGGGGTTGTTCTGAAGATGATATTTTGGGTGCATTTAAAAGACAACCTAACTTAATGCTACGGTCTCCGGACAAACTCAATGCGGTGATGCGTTTTTGGGTCAAACAATTTGGTTGGGATCCTTTATTGCTCCTGGGCACACCCGTTCTTTTCGGATTTAGTATACAGAAAAGGCTTATTCCGAGGGCTTCTGTTGTCCAGTATCTTCTTTCCAAAGGTTTGGTGAAGGAGGATGCTAGCTTAACTGCACCATTTTATTTGAAGGACGAGTTGTTCCTGCAAAAGTATGTGAAACGTTTTGGAGACGAAGCTTCCATGCTATTAAAGCTATATCAGGGAGGAGGATGCTAG
Protein sequence

>MS.gene041552.t1

MFHYHRLGALLNPQTPKCYLFLHRTHSFTYFSTLSHSDQQCFPVSYLTNNCGLSPQDALKASKRLRFNTPNKPDSVIAFFKTHGFSDHQIQTIIRRIPSLIVSNPIKSILPKFQFLASKGASPQDIVATVTRSPRFLASSLEKYIIPSFELVRSFCPSDHKAITSIIVCPPTIRDSRLKPNLQFLLDFGVTRSSIYHLLTTRPSTICSTDLKKALEEIKELGFQPSKYNFCVALLAKRAVTKSQWDAKVDALKSWGCSEDDILGAFKRQPNLMLRSPDKLNAVMRFWVKQFGWDPLLLLGTPVLFGFSIQKRLIPRASVVQYLLSKGLVKEDASLTAPFYLKDELFLQKYVKRFGDEASMLLKLYQGGGC