AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene041646

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene041646.t1 MTR_1g023660 55.263 114 51 0 176 289 227 340 1.60e-45 157
MS.gene041646.t1 MTR_8g099780 32.411 253 164 4 40 289 64 312 3.67e-44 152
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene041646.t1 AT2G01930 51.163 301 117 10 1 289 1 283 7.93e-95 281
MS.gene041646.t1 AT2G01930 51.163 301 117 10 1 289 1 283 7.93e-95 281
MS.gene041646.t1 AT1G14685 50.847 295 123 8 1 289 1 279 3.27e-88 265
MS.gene041646.t1 AT1G14685 50.847 295 123 8 1 289 1 279 3.27e-88 265
MS.gene041646.t1 AT1G14685 50.847 295 123 8 1 289 1 279 3.27e-88 265
MS.gene041646.t1 AT1G14685 50.847 295 123 8 1 289 1 279 3.27e-88 265
MS.gene041646.t1 AT1G68120 46.780 295 120 10 4 289 3 269 5.74e-77 235
MS.gene041646.t1 AT2G35550 54.422 147 65 2 143 289 82 226 5.81e-50 165
MS.gene041646.t1 AT2G35550 54.422 147 65 2 143 289 82 226 5.81e-50 165
MS.gene041646.t1 AT2G35550 54.422 147 65 2 143 289 82 226 5.81e-50 165
MS.gene041646.t1 AT2G35550 54.422 147 65 2 143 289 127 271 8.13e-50 166
MS.gene041646.t1 AT2G21240 32.453 265 164 5 28 289 44 296 9.37e-44 151
MS.gene041646.t1 AT2G21240 32.453 265 164 5 28 289 44 296 9.37e-44 151
MS.gene041646.t1 AT5G42520 56.075 107 46 1 184 289 176 282 5.14e-42 146
MS.gene041646.t1 AT5G42520 56.075 107 46 1 184 289 232 338 7.37e-42 147
MS.gene041646.t1 AT5G42520 56.075 107 46 1 184 289 236 342 9.75e-42 147
MS.gene041646.t1 AT4G38910 43.478 138 77 1 152 289 122 258 1.29e-41 144
MS.gene041646.t1 AT4G38910 43.478 138 77 1 152 289 147 283 1.74e-41 145

Find 98 sgRNAs with CRISPR-Local

Find 99 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCATATCACCATAGGGAAAT+TGG 0.193266 6.3:+69443936 MS.gene041646:CDS
CGATAGATTTGAGGACTTAT+TGG 0.234611 6.3:+69444585 MS.gene041646:CDS
TGCAATTAACGGGATTGATT+TGG 0.279573 6.3:+69444328 MS.gene041646:CDS
GATAGATTTGAGGACTTATT+GGG 0.312732 6.3:+69444586 MS.gene041646:CDS
CCAACAAGTTTGTTACTATC+AGG 0.343708 6.3:+69444621 MS.gene041646:CDS
ATTCCTGTTTGTTCTTGCAC+TGG 0.347046 6.3:+69444368 MS.gene041646:CDS
CACCTCAACAATGTTATAGA+TGG 0.355446 6.3:+69444393 MS.gene041646:CDS
ATGGACTTAACATAAGCAAT+TGG 0.360767 6.3:+69443790 MS.gene041646:CDS
CCGGAAAAGCCGCCTTTGAT+TGG 0.380482 6.3:+69443876 MS.gene041646:CDS
TTTCTAATCCGATAGATTTG+AGG 0.399273 6.3:+69444576 MS.gene041646:CDS
CTTACCCTATGGATTATATG+AGG 0.406292 6.3:+69443973 MS.gene041646:CDS
AATGATTCGACCATGTGAAT+TGG 0.408906 6.3:+69444112 MS.gene041646:CDS
CGAAATGCTGCGGTTATGTC+GGG 0.411374 6.3:+69443903 MS.gene041646:CDS
TGGACTTAACATAAGCAATT+GGG 0.420997 6.3:+69443791 MS.gene041646:CDS
CTACGGAAATTGCAATTAAC+GGG 0.422090 6.3:+69444318 MS.gene041646:CDS
TCATCATTTAAGAATCATCT+TGG 0.425330 6.3:+69443831 MS.gene041646:CDS
TTAGGAGACTTCGGCACCTT+CGG 0.426454 6.3:-69444209 None:intergenic
TCGACCATGTGAATTGGTTA+AGG 0.427145 6.3:+69444118 MS.gene041646:CDS
ACTACGGAAATTGCAATTAA+CGG 0.434305 6.3:+69444317 MS.gene041646:CDS
CATATCACCATAGGGAAATT+GGG 0.436973 6.3:+69443937 MS.gene041646:CDS
CCTGATAGTAACAAACTTGT+TGG 0.444146 6.3:-69444621 None:intergenic
CTATAACCTGGAGGGTTAGT+AGG 0.446214 6.3:-69444050 None:intergenic
TGATTCTTAAATGATGAAAC+AGG 0.446858 6.3:-69443825 None:intergenic
GCCTCAAACTACTTACCCTA+TGG 0.455211 6.3:+69443962 MS.gene041646:CDS
CTCTTCGGCTTCTTTGCCTT+AGG 0.455380 6.3:-69444227 None:intergenic
TCGAAATGCTGCGGTTATGT+CGG 0.458215 6.3:+69443902 MS.gene041646:CDS
TAATTTAGTGTTGTAATGGA+TGG 0.462352 6.3:+69443762 None:intergenic
ATAGATGGGGCTCGGGTGGA+TGG 0.464652 6.3:+69444408 MS.gene041646:CDS
TTCCTGTTTGTTCTTGCACT+GGG 0.468493 6.3:+69444369 MS.gene041646:CDS
GTTGTAATGGATGGAGATAA+TGG 0.478647 6.3:+69443771 None:intergenic
ACAATGTTATAGATGGGGCT+CGG 0.487220 6.3:+69444400 MS.gene041646:CDS
GGCACACGAGGTCCTCTCTT+CGG 0.493154 6.3:-69444242 None:intergenic
CCATTCACCTTCTCGACCAC+AGG 0.494618 6.3:-69444164 None:intergenic
TAGTATTCCCGAGACATCTT+CGG 0.495994 6.3:+69444076 MS.gene041646:CDS
ACAACTGATGCCATCGATGC+CGG 0.499881 6.3:+69443857 MS.gene041646:CDS
TTCTTTGCCTTAGGAGACTT+CGG 0.501514 6.3:-69444218 None:intergenic
GTCCCAGTGCAAGAACAAAC+AGG 0.501675 6.3:-69444371 None:intergenic
GTGCAAGAACAAACAGGAAT+CGG 0.503075 6.3:-69444365 None:intergenic
GAAGGAGAATTCTCGTCCTT+CGG 0.503811 6.3:-69444263 None:intergenic
CAATGTTATAGATGGGGCTC+GGG 0.507375 6.3:+69444401 MS.gene041646:CDS
CCTGTGGTCGAGAAGGTGAA+TGG 0.509475 6.3:+69444164 MS.gene041646:CDS
GAGGCATCCCAATTTCCCTA+TGG 0.509728 6.3:-69443944 None:intergenic
ATGATGAGCCGAAGATGTCT+CGG 0.513423 6.3:-69444084 None:intergenic
ACCTCAACAATGTTATAGAT+GGG 0.523017 6.3:+69444394 MS.gene041646:CDS
CCGCGTCGTTTAGTACTCAT+AGG 0.528654 6.3:-69444473 None:intergenic
CAATAAGTCCTCAAATCTAT+CGG 0.528692 6.3:-69444584 None:intergenic
GCATCCCTCATATAATCCAT+AGG 0.528771 6.3:-69443978 None:intergenic
GTCGAGAAGGTGAATGGAAC+TGG 0.530658 6.3:+69444170 MS.gene041646:CDS
GAAGGACGAGAATTCTCCTT+CGG 0.531353 6.3:+69444265 MS.gene041646:CDS
CTTGGTGTTCGTTGAACCGA+AGG 0.532361 6.3:-69444281 None:intergenic
TCCATAGGGTAAGTAGTTTG+AGG 0.540334 6.3:-69443963 None:intergenic
TGTTATAGATGGGGCTCGGG+TGG 0.542239 6.3:+69444404 MS.gene041646:CDS
ACCACAGGTGCTTCCTCCAT+CGG 0.542410 6.3:-69444149 None:intergenic
GCATTTCGACTTCCAATCAA+AGG 0.543040 6.3:-69443888 None:intergenic
CTAACGGTGCATATCACCAT+AGG 0.548956 6.3:+69443928 MS.gene041646:CDS
TTCTCGTCCTTCGGCACACG+AGG 0.552572 6.3:-69444254 None:intergenic
TGATGAGCCGAAGATGTCTC+GGG 0.558891 6.3:-69444083 None:intergenic
ATTAGAGAAACTTGCAGCCG+AGG 0.559521 6.3:+69444544 MS.gene041646:CDS
CATCCCTCATATAATCCATA+GGG 0.559663 6.3:-69443977 None:intergenic
ATTAGAAAAGTTATAACCCT+CGG 0.560267 6.3:-69444561 None:intergenic
AGGACTTATTGGGCAAAACA+TGG 0.561945 6.3:+69444596 MS.gene041646:CDS
ATGATACCTACTAACCCTCC+AGG 0.562585 6.3:+69444044 MS.gene041646:CDS
GCGGTTATGTCGGGAACTAA+CGG 0.570883 6.3:+69443912 MS.gene041646:CDS
GAGAGGACCTCGTGTGCCGA+AGG 0.571472 6.3:+69444247 MS.gene041646:CDS
GCCGGAAGGAAAATGAGTAT+AGG 0.573233 6.3:+69444506 MS.gene041646:CDS
TTAGAGAAACTTGCAGCCGA+GGG 0.574547 6.3:+69444545 MS.gene041646:CDS
TGGATTATATGAGGGATGCA+TGG 0.575577 6.3:+69443982 MS.gene041646:CDS
CGACGCGGTGCTAGAATAGC+CGG 0.576753 6.3:+69444488 MS.gene041646:CDS
GGAAGCACCTGTGGTCGAGA+AGG 0.588134 6.3:+69444157 MS.gene041646:CDS
GAAGGTGCCGAAGTCTCCTA+AGG 0.590939 6.3:+69444211 MS.gene041646:CDS
GCCGATGGAGGAAGCACCTG+TGG 0.594587 6.3:+69444148 MS.gene041646:CDS
TTACCCTATGGATTATATGA+GGG 0.595783 6.3:+69443974 MS.gene041646:CDS
GGACTTAACATAAGCAATTG+GGG 0.601047 6.3:+69443792 MS.gene041646:CDS
TTCGGTTCAACGAACACCAA+GGG 0.601561 6.3:+69444283 MS.gene041646:CDS
CAAGTTTGTTACTATCAGGT+AGG 0.604667 6.3:+69444625 MS.gene041646:CDS
AAGGGCACAAAAGAAAACTA+CGG 0.609634 6.3:+69444301 MS.gene041646:CDS
CGTTTAGTACTCATAGGCAA+AGG 0.610952 6.3:-69444467 None:intergenic
ATGCATGGATTAGTAGTCAG+AGG 0.611474 6.3:+69443997 MS.gene041646:CDS
AAGGCAAAGAAGCCGAAGAG+AGG 0.622231 6.3:+69444230 MS.gene041646:CDS
CCCCATCTATAACATTGTTG+AGG 0.623582 6.3:-69444395 None:intergenic
TAAGAAGAGGCAAGGACCGA+AGG 0.629324 6.3:+69444193 MS.gene041646:CDS
TACTAGTACTATAACCTGGA+GGG 0.630649 6.3:-69444058 None:intergenic
GGAATACTAGTACTATAACC+TGG 0.630941 6.3:-69444062 None:intergenic
TCTTCCTTAACCAATTCACA+TGG 0.638004 6.3:-69444122 None:intergenic
TTTCGACTTCCAATCAAAGG+CGG 0.642330 6.3:-69443885 None:intergenic
TGCATGGATTAGTAGTCAGA+GGG 0.642777 6.3:+69443998 MS.gene041646:CDS
TGAATGGAACTGGTAAGAAG+AGG 0.650068 6.3:+69444180 MS.gene041646:CDS
GGAACTGGTAAGAAGAGGCA+AGG 0.651851 6.3:+69444185 MS.gene041646:CDS
TAACGGTGCATATCACCATA+GGG 0.655398 6.3:+69443929 MS.gene041646:CDS
TAAGGAAGAAATGCCGATGG+AGG 0.655765 6.3:+69444136 MS.gene041646:CDS
GATTGGAAGTCGAAATGCTG+CGG 0.656562 6.3:+69443893 MS.gene041646:CDS
CCTCAACAATGTTATAGATG+GGG 0.670226 6.3:+69444395 MS.gene041646:CDS
CTTCGGTTCAACGAACACCA+AGG 0.677515 6.3:+69444282 MS.gene041646:CDS
GGTTAAGGAAGAAATGCCGA+TGG 0.695305 6.3:+69444133 MS.gene041646:CDS
ATACTAGTACTATAACCTGG+AGG 0.700408 6.3:-69444059 None:intergenic
GCAGTCTGCATGCTGCACAA+CGG 0.723033 6.3:+69444430 MS.gene041646:CDS
GCGGTGCTAGAATAGCCGGA+AGG 0.737428 6.3:+69444492 MS.gene041646:CDS
CCTATGAGTACTAAACGACG+CGG 0.777544 6.3:+69444473 MS.gene041646:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
! ATTAGAAAAGTTATAACCCT+CGG - chr6.3:69444564-69444583 None:intergenic 25.0%
! TCATCATTTAAGAATCATCT+TGG + chr6.3:69443831-69443850 MS.gene041646:CDS 25.0%
! TGATTCTTAAATGATGAAAC+AGG - chr6.3:69443828-69443847 None:intergenic 25.0%
ACCTCAACAATGTTATAGAT+GGG + chr6.3:69444394-69444413 MS.gene041646:CDS 30.0%
ACTACGGAAATTGCAATTAA+CGG + chr6.3:69444317-69444336 MS.gene041646:CDS 30.0%
ATGGACTTAACATAAGCAAT+TGG + chr6.3:69443790-69443809 MS.gene041646:CDS 30.0%
CAATAAGTCCTCAAATCTAT+CGG - chr6.3:69444587-69444606 None:intergenic 30.0%
GATAGATTTGAGGACTTATT+GGG + chr6.3:69444586-69444605 MS.gene041646:CDS 30.0%
TGGACTTAACATAAGCAATT+GGG + chr6.3:69443791-69443810 MS.gene041646:CDS 30.0%
TTTCTAATCCGATAGATTTG+AGG + chr6.3:69444576-69444595 MS.gene041646:CDS 30.0%
! TTACCCTATGGATTATATGA+GGG + chr6.3:69443974-69443993 MS.gene041646:CDS 30.0%
AATGATTCGACCATGTGAAT+TGG + chr6.3:69444112-69444131 MS.gene041646:CDS 35.0%
ATACTAGTACTATAACCTGG+AGG - chr6.3:69444062-69444081 None:intergenic 35.0%
CACCTCAACAATGTTATAGA+TGG + chr6.3:69444393-69444412 MS.gene041646:CDS 35.0%
CATATCACCATAGGGAAATT+GGG + chr6.3:69443937-69443956 MS.gene041646:CDS 35.0%
CATCCCTCATATAATCCATA+GGG - chr6.3:69443980-69443999 None:intergenic 35.0%
CCTCAACAATGTTATAGATG+GGG + chr6.3:69444395-69444414 MS.gene041646:CDS 35.0%
CCTGATAGTAACAAACTTGT+TGG - chr6.3:69444624-69444643 None:intergenic 35.0%
CGATAGATTTGAGGACTTAT+TGG + chr6.3:69444585-69444604 MS.gene041646:CDS 35.0%
CTACGGAAATTGCAATTAAC+GGG + chr6.3:69444318-69444337 MS.gene041646:CDS 35.0%
GGAATACTAGTACTATAACC+TGG - chr6.3:69444065-69444084 None:intergenic 35.0%
GGACTTAACATAAGCAATTG+GGG + chr6.3:69443792-69443811 MS.gene041646:CDS 35.0%
TACTAGTACTATAACCTGGA+GGG - chr6.3:69444061-69444080 None:intergenic 35.0%
TCTTCCTTAACCAATTCACA+TGG - chr6.3:69444125-69444144 None:intergenic 35.0%
TGCAATTAACGGGATTGATT+TGG + chr6.3:69444328-69444347 MS.gene041646:CDS 35.0%
! AAGGGCACAAAAGAAAACTA+CGG + chr6.3:69444301-69444320 MS.gene041646:CDS 35.0%
! CTTACCCTATGGATTATATG+AGG + chr6.3:69443973-69443992 MS.gene041646:CDS 35.0%
! TCCTATACTCATTTTCCTTC+CGG - chr6.3:69444510-69444529 None:intergenic 35.0%
!! CCAACAAGTTTGTTACTATC+AGG + chr6.3:69444621-69444640 MS.gene041646:CDS 35.0%
ACAATGTTATAGATGGGGCT+CGG + chr6.3:69444400-69444419 MS.gene041646:CDS 40.0%
AGGACTTATTGGGCAAAACA+TGG + chr6.3:69444596-69444615 MS.gene041646:CDS 40.0%
ATTCCTGTTTGTTCTTGCAC+TGG + chr6.3:69444368-69444387 MS.gene041646:CDS 40.0%
CCCCATCTATAACATTGTTG+AGG - chr6.3:69444398-69444417 None:intergenic 40.0%
CGTTTAGTACTCATAGGCAA+AGG - chr6.3:69444470-69444489 None:intergenic 40.0%
GCATATCACCATAGGGAAAT+TGG + chr6.3:69443936-69443955 MS.gene041646:CDS 40.0%
GCATCCCTCATATAATCCAT+AGG - chr6.3:69443981-69444000 None:intergenic 40.0%
GCATTTCGACTTCCAATCAA+AGG - chr6.3:69443891-69443910 None:intergenic 40.0%
GTGCAAGAACAAACAGGAAT+CGG - chr6.3:69444368-69444387 None:intergenic 40.0%
TAACGGTGCATATCACCATA+GGG + chr6.3:69443929-69443948 MS.gene041646:CDS 40.0%
TAGTATTCCCGAGACATCTT+CGG + chr6.3:69444076-69444095 MS.gene041646:CDS 40.0%
TCCATAGGGTAAGTAGTTTG+AGG - chr6.3:69443966-69443985 None:intergenic 40.0%
TCGACCATGTGAATTGGTTA+AGG + chr6.3:69444118-69444137 MS.gene041646:CDS 40.0%
TGAATGGAACTGGTAAGAAG+AGG + chr6.3:69444180-69444199 MS.gene041646:CDS 40.0%
TGGATTATATGAGGGATGCA+TGG + chr6.3:69443982-69444001 MS.gene041646:CDS 40.0%
TTCCTGTTTGTTCTTGCACT+GGG + chr6.3:69444369-69444388 MS.gene041646:CDS 40.0%
TTCTTTGCCTTAGGAGACTT+CGG - chr6.3:69444221-69444240 None:intergenic 40.0%
TTTCGACTTCCAATCAAAGG+CGG - chr6.3:69443888-69443907 None:intergenic 40.0%
! GTAGTTTTCTTTTGTGCCCT+TGG - chr6.3:69444302-69444321 None:intergenic 40.0%
!! ATGCATGGATTAGTAGTCAG+AGG + chr6.3:69443997-69444016 MS.gene041646:CDS 40.0%
!! TGCATGGATTAGTAGTCAGA+GGG + chr6.3:69443998-69444017 MS.gene041646:CDS 40.0%
ATGATACCTACTAACCCTCC+AGG + chr6.3:69444044-69444063 MS.gene041646:CDS 45.0%
ATGATGAGCCGAAGATGTCT+CGG - chr6.3:69444087-69444106 None:intergenic 45.0%
ATTAGAGAAACTTGCAGCCG+AGG + chr6.3:69444544-69444563 MS.gene041646:CDS 45.0%
CAATGTTATAGATGGGGCTC+GGG + chr6.3:69444401-69444420 MS.gene041646:CDS 45.0%
CCTATGAGTACTAAACGACG+CGG + chr6.3:69444473-69444492 MS.gene041646:CDS 45.0%
CTAACGGTGCATATCACCAT+AGG + chr6.3:69443928-69443947 MS.gene041646:CDS 45.0%
GAAGGACGAGAATTCTCCTT+CGG + chr6.3:69444265-69444284 MS.gene041646:CDS 45.0%
GAAGGAGAATTCTCGTCCTT+CGG - chr6.3:69444266-69444285 None:intergenic 45.0%
GATTGGAAGTCGAAATGCTG+CGG + chr6.3:69443893-69443912 MS.gene041646:CDS 45.0%
GCCGGAAGGAAAATGAGTAT+AGG + chr6.3:69444506-69444525 MS.gene041646:CDS 45.0%
GCCTCAAACTACTTACCCTA+TGG + chr6.3:69443962-69443981 MS.gene041646:CDS 45.0%
GGTTAAGGAAGAAATGCCGA+TGG + chr6.3:69444133-69444152 MS.gene041646:CDS 45.0%
TAAGGAAGAAATGCCGATGG+AGG + chr6.3:69444136-69444155 MS.gene041646:CDS 45.0%
TCGAAATGCTGCGGTTATGT+CGG + chr6.3:69443902-69443921 MS.gene041646:CDS 45.0%
TTAGAGAAACTTGCAGCCGA+GGG + chr6.3:69444545-69444564 MS.gene041646:CDS 45.0%
TTCGGTTCAACGAACACCAA+GGG + chr6.3:69444283-69444302 MS.gene041646:CDS 45.0%
! CTATAACCTGGAGGGTTAGT+AGG - chr6.3:69444053-69444072 None:intergenic 45.0%
AAGGCAAAGAAGCCGAAGAG+AGG + chr6.3:69444230-69444249 MS.gene041646:CDS 50.0%
ACAACTGATGCCATCGATGC+CGG + chr6.3:69443857-69443876 MS.gene041646:CDS 50.0%
CCGCGTCGTTTAGTACTCAT+AGG - chr6.3:69444476-69444495 None:intergenic 50.0%
CGAAATGCTGCGGTTATGTC+GGG + chr6.3:69443903-69443922 MS.gene041646:CDS 50.0%
CTCTTCGGCTTCTTTGCCTT+AGG - chr6.3:69444230-69444249 None:intergenic 50.0%
CTTCGGTTCAACGAACACCA+AGG + chr6.3:69444282-69444301 MS.gene041646:CDS 50.0%
GCGGTTATGTCGGGAACTAA+CGG + chr6.3:69443912-69443931 MS.gene041646:CDS 50.0%
GGAACTGGTAAGAAGAGGCA+AGG + chr6.3:69444185-69444204 MS.gene041646:CDS 50.0%
GTCCCAGTGCAAGAACAAAC+AGG - chr6.3:69444374-69444393 None:intergenic 50.0%
GTCGAGAAGGTGAATGGAAC+TGG + chr6.3:69444170-69444189 MS.gene041646:CDS 50.0%
TAAGAAGAGGCAAGGACCGA+AGG + chr6.3:69444193-69444212 MS.gene041646:CDS 50.0%
TGATGAGCCGAAGATGTCTC+GGG - chr6.3:69444086-69444105 None:intergenic 50.0%
TTAGGAGACTTCGGCACCTT+CGG - chr6.3:69444212-69444231 None:intergenic 50.0%
! CCAATCAAAGGCGGCTTTTC+CGG - chr6.3:69443879-69443898 None:intergenic 50.0%
! GAGGCATCCCAATTTCCCTA+TGG - chr6.3:69443947-69443966 None:intergenic 50.0%
!! CTTGGTGTTCGTTGAACCGA+AGG - chr6.3:69444284-69444303 None:intergenic 50.0%
ACCACAGGTGCTTCCTCCAT+CGG - chr6.3:69444152-69444171 None:intergenic 55.0%
CCATTCACCTTCTCGACCAC+AGG - chr6.3:69444167-69444186 None:intergenic 55.0%
CCGGAAAAGCCGCCTTTGAT+TGG + chr6.3:69443876-69443895 MS.gene041646:CDS 55.0%
CCTGTGGTCGAGAAGGTGAA+TGG + chr6.3:69444164-69444183 MS.gene041646:CDS 55.0%
GCAGTCTGCATGCTGCACAA+CGG + chr6.3:69444430-69444449 MS.gene041646:CDS 55.0%
TGTTATAGATGGGGCTCGGG+TGG + chr6.3:69444404-69444423 MS.gene041646:CDS 55.0%
!! GAAGGTGCCGAAGTCTCCTA+AGG + chr6.3:69444211-69444230 MS.gene041646:CDS 55.0%
ATAGATGGGGCTCGGGTGGA+TGG + chr6.3:69444408-69444427 MS.gene041646:CDS 60.0%
GGCACACGAGGTCCTCTCTT+CGG - chr6.3:69444245-69444264 None:intergenic 60.0%
TTCTCGTCCTTCGGCACACG+AGG - chr6.3:69444257-69444276 None:intergenic 60.0%
! CGACGCGGTGCTAGAATAGC+CGG + chr6.3:69444488-69444507 MS.gene041646:CDS 60.0%
! GCGGTGCTAGAATAGCCGGA+AGG + chr6.3:69444492-69444511 MS.gene041646:CDS 60.0%
!! GGAAGCACCTGTGGTCGAGA+AGG + chr6.3:69444157-69444176 MS.gene041646:CDS 60.0%
GAGAGGACCTCGTGTGCCGA+AGG + chr6.3:69444247-69444266 MS.gene041646:CDS 65.0%
!! GCCGATGGAGGAAGCACCTG+TGG + chr6.3:69444148-69444167 MS.gene041646:CDS 65.0%
!! GGCGGCTTTTCCGGCATCGA+TGG - chr6.3:69443870-69443889 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr6.3 gene 69443777 69444646 69443777 ID=MS.gene041646
chr6.3 mRNA 69443777 69444646 69443777 ID=MS.gene041646.t1;Parent=MS.gene041646
chr6.3 exon 69443777 69444646 69443777 ID=MS.gene041646.t1.exon1;Parent=MS.gene041646.t1
chr6.3 CDS 69443777 69444646 69443777 ID=cds.MS.gene041646.t1;Parent=MS.gene041646.t1
Gene Sequence

>MS.gene041646

ATGGATGGAGATAATGGACTTAACATAAGCAATTGGGGATACTATGAACCTGTTTCATCATTTAAGAATCATCTTGGTTTACAACTGATGCCATCGATGCCGGAAAAGCCGCCTTTGATTGGAAGTCGAAATGCTGCGGTTATGTCGGGAACTAACGGTGCATATCACCATAGGGAAATTGGGATGCCTCAAACTACTTACCCTATGGATTATATGAGGGATGCATGGATTAGTAGTCAGAGGGATAATAAGTATATGAATATGAATATGATACCTACTAACCCTCCAGGTTATAGTACTAGTATTCCCGAGACATCTTCGGCTCATCATATTCAAATGATTCGACCATGTGAATTGGTTAAGGAAGAAATGCCGATGGAGGAAGCACCTGTGGTCGAGAAGGTGAATGGAACTGGTAAGAAGAGGCAAGGACCGAAGGTGCCGAAGTCTCCTAAGGCAAAGAAGCCGAAGAGAGGACCTCGTGTGCCGAAGGACGAGAATTCTCCTTCGGTTCAACGAACACCAAGGGCACAAAAGAAAACTACGGAAATTGCAATTAACGGGATTGATTTGGATATTTCAAGTATTCCGATTCCTGTTTGTTCTTGCACTGGGACACCTCAACAATGTTATAGATGGGGCTCGGGTGGATGGCAGTCTGCATGCTGCACAACGGCTATATCGATATATCCTTTGCCTATGAGTACTAAACGACGCGGTGCTAGAATAGCCGGAAGGAAAATGAGTATAGGAGCTTTTAAGAAAGTATTAGAGAAACTTGCAGCCGAGGGTTATAACTTTTCTAATCCGATAGATTTGAGGACTTATTGGGCAAAACATGGCACCAACAAGTTTGTTACTATCAGGTAG
Protein sequence

>MS.gene041646.t1

MDGDNGLNISNWGYYEPVSSFKNHLGLQLMPSMPEKPPLIGSRNAAVMSGTNGAYHHREIGMPQTTYPMDYMRDAWISSQRDNKYMNMNMIPTNPPGYSTSIPETSSAHHIQMIRPCELVKEEMPMEEAPVVEKVNGTGKKRQGPKVPKSPKAKKPKRGPRVPKDENSPSVQRTPRAQKKTTEIAINGIDLDISSIPIPVCSCTGTPQQCYRWGSGGWQSACCTTAISIYPLPMSTKRRGARIAGRKMSIGAFKKVLEKLAAEGYNFSNPIDLRTYWAKHGTNKFVTIR