Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene041652.t1 | XP_024642081.1 | 89.7 | 243 | 24 | 1 | 3 | 245 | 15 | 256 | 5.40E-113 | 417.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene041652.t1 | Q568K5 | 33.0 | 233 | 131 | 3 | 3 | 234 | 8 | 216 | 3.0e-19 | 97.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene041652.t1 | G7KHW9 | 89.7 | 243 | 24 | 1 | 3 | 245 | 15 | 256 | 3.9e-113 | 417.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene041652.t1 | TR | GNAT |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene041652.t1 | MTR_6g072100 | 89.712 | 243 | 24 | 1 | 3 | 245 | 15 | 256 | 4.73e-160 | 444 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene041652.t1 | AT1G18335 | 52.966 | 236 | 104 | 1 | 10 | 245 | 33 | 261 | 2.91e-73 | 224 |
| MS.gene041652.t1 | AT1G18335 | 52.966 | 236 | 104 | 1 | 10 | 245 | 33 | 261 | 7.64e-73 | 223 |
| MS.gene041652.t1 | AT1G18335 | 52.966 | 236 | 104 | 1 | 10 | 245 | 33 | 261 | 7.64e-73 | 223 |
Find 0 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| 42479 | gene | 11957 | 18963 | 11957 | ID=MS.gene041652 |
| 42479 | mRNA | 11957 | 18963 | 11957 | ID=MS.gene041652.t1;Parent=MS.gene041652 |
| 42479 | exon | 11957 | 11992 | 11957 | ID=MS.gene041652.t1.exon1;Parent=MS.gene041652.t1 |
| 42479 | CDS | 11957 | 11992 | 11957 | ID=cds.MS.gene041652.t1;Parent=MS.gene041652.t1 |
| 42479 | exon | 12060 | 12162 | 12060 | ID=MS.gene041652.t1.exon2;Parent=MS.gene041652.t1 |
| 42479 | CDS | 12060 | 12162 | 12060 | ID=cds.MS.gene041652.t1;Parent=MS.gene041652.t1 |
| 42479 | exon | 13220 | 13299 | 13220 | ID=MS.gene041652.t1.exon3;Parent=MS.gene041652.t1 |
| 42479 | CDS | 13220 | 13299 | 13220 | ID=cds.MS.gene041652.t1;Parent=MS.gene041652.t1 |
| 42479 | exon | 15313 | 15642 | 15313 | ID=MS.gene041652.t1.exon4;Parent=MS.gene041652.t1 |
| 42479 | CDS | 15313 | 15642 | 15313 | ID=cds.MS.gene041652.t1;Parent=MS.gene041652.t1 |
| 42479 | exon | 15881 | 15957 | 15881 | ID=MS.gene041652.t1.exon5;Parent=MS.gene041652.t1 |
| 42479 | CDS | 15881 | 15957 | 15881 | ID=cds.MS.gene041652.t1;Parent=MS.gene041652.t1 |
| 42479 | exon | 18785 | 18830 | 18785 | ID=MS.gene041652.t1.exon6;Parent=MS.gene041652.t1 |
| 42479 | CDS | 18785 | 18830 | 18785 | ID=cds.MS.gene041652.t1;Parent=MS.gene041652.t1 |
| 42479 | exon | 18901 | 18963 | 18901 | ID=MS.gene041652.t1.exon7;Parent=MS.gene041652.t1 |
| 42479 | CDS | 18901 | 18963 | 18901 | ID=cds.MS.gene041652.t1;Parent=MS.gene041652.t1 |
| Gene Sequence |
| Protein sequence |
