AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene041720

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene041720.t1 MTR_0091s0080 33.883 546 245 7 43 573 28 472 8.15e-107 330
MS.gene041720.t1 MTR_0091s0090 42.512 207 118 1 359 565 4 209 4.74e-55 187
MS.gene041720.t1 MTR_0091s0090 36.946 203 125 1 91 290 3 205 5.16e-40 147
MS.gene041720.t1 MTR_1g052720 34.470 264 146 6 43 283 36 295 8.96e-49 172
MS.gene041720.t1 MTR_1g052720 34.432 273 161 4 308 566 34 302 1.58e-47 168
MS.gene041720.t1 MTR_6g465600 35.714 238 138 4 44 267 40 276 3.32e-44 159
MS.gene041720.t1 MTR_6g465600 36.694 248 142 4 300 533 28 274 3.49e-44 159
MS.gene041720.t1 MTR_0246s0040 34.091 264 156 7 317 579 72 318 1.77e-34 133
MS.gene041720.t1 MTR_0246s0040 33.028 218 133 3 50 267 72 276 1.23e-32 128
MS.gene041720.t1 MTR_1g105780 29.437 231 150 2 49 267 40 269 1.57e-29 118
MS.gene041720.t1 MTR_1g105780 29.302 215 140 2 314 517 38 251 4.79e-26 108
MS.gene041720.t1 MTR_1g105765 29.004 231 151 2 49 267 40 269 4.20e-29 117
MS.gene041720.t1 MTR_1g105765 29.767 215 139 2 314 517 38 251 2.51e-26 108
MS.gene041720.t1 MTR_7g110090 28.632 234 154 2 49 270 39 271 4.90e-29 116
MS.gene041720.t1 MTR_7g110090 27.490 251 165 5 300 536 22 269 5.61e-24 102
MS.gene041720.t1 MTR_3g070250 29.707 239 150 2 49 270 44 281 1.27e-26 110
MS.gene041720.t1 MTR_3g070250 28.512 242 151 6 299 521 26 264 7.61e-20 90.5
MS.gene041720.t1 MTR_4g032560 29.060 234 153 2 49 270 68 300 8.36e-26 108
MS.gene041720.t1 MTR_4g032560 27.881 269 180 5 277 532 28 295 1.01e-21 96.3
MS.gene041720.t1 MTR_1g084880 29.289 239 151 2 49 270 39 276 1.00e-25 107
MS.gene041720.t1 MTR_1g084880 27.511 229 145 3 314 524 37 262 1.50e-18 86.7
MS.gene041720.t1 MTR_3g048970 28.870 239 152 2 49 270 39 276 2.43e-25 106
MS.gene041720.t1 MTR_3g048970 27.948 229 144 4 314 524 37 262 1.28e-18 86.7
MS.gene041720.t1 MTR_4g032580 28.632 234 154 2 49 270 68 300 3.79e-25 106
MS.gene041720.t1 MTR_4g032580 27.881 269 180 5 277 532 28 295 9.35e-22 96.3
MS.gene041720.t1 MTR_3g085990 29.730 222 130 4 49 270 40 235 6.80e-25 103
MS.gene041720.t1 MTR_3g085990 26.316 228 140 6 298 524 21 221 2.64e-15 76.3
MS.gene041720.t1 MTR_1g023840 40.594 101 60 0 434 534 10 110 7.89e-22 92.0
MS.gene041720.t1 MTR_1g023840 44.681 94 52 0 169 262 13 106 1.28e-21 91.7
MS.gene041720.t1 MTR_7g050355 26.022 269 133 3 300 567 28 231 2.99e-21 98.2
MS.gene041720.t1 MTR_1g047540 26.840 231 147 5 49 270 39 256 4.65e-19 90.9
MS.gene041720.t1 MTR_1g047540 27.530 247 155 8 300 536 22 254 8.27e-17 84.0
MS.gene041720.t1 MTR_4g062370 27.165 254 163 6 273 514 8 251 4.73e-19 91.7
MS.gene041720.t1 MTR_4g062370 27.854 219 141 4 49 253 43 258 1.94e-18 89.7
MS.gene041720.t1 MTR_2g100360 25.792 221 142 3 48 249 38 255 4.02e-18 85.1
MS.gene041720.t1 MTR_2g100360 25.221 226 152 3 314 523 37 261 4.23e-16 79.3
MS.gene041720.t1 MTR_5g066660 26.210 248 162 6 50 295 40 268 5.01e-18 85.1
MS.gene041720.t1 MTR_5g066660 26.484 219 140 5 314 530 37 236 1.39e-12 68.9
MS.gene041720.t1 MTR_2g038740 28.272 191 120 1 49 222 39 229 1.38e-17 87.0
MS.gene041720.t1 MTR_2g038740 27.413 259 160 5 314 545 37 294 1.83e-17 86.7
MS.gene041720.t1 MTR_8g064960 41.892 74 42 1 189 262 27 99 2.32e-17 78.6
MS.gene041720.t1 MTR_8g064930 67.347 49 16 0 322 370 2 50 4.70e-17 75.5
MS.gene041720.t1 MTR_3g452180 26.374 182 121 2 101 270 7 187 6.58e-17 79.7
MS.gene041720.t1 MTR_3g452180 25.824 182 119 4 368 536 7 185 7.00e-14 70.9
MS.gene041720.t1 MTR_4g117740 28.571 154 93 2 60 213 61 197 1.49e-16 79.0
MS.gene041720.t1 MTR_4g117740 27.891 147 88 2 331 477 65 193 1.44e-13 70.1
MS.gene041720.t1 MTR_1g087870 25.000 240 153 6 64 282 2 235 5.74e-16 78.6
MS.gene041720.t1 MTR_1g087870 25.114 219 147 4 331 533 2 219 7.40e-16 78.2
MS.gene041720.t1 MTR_6g033605 37.349 83 51 1 189 270 30 112 1.99e-14 70.1
MS.gene041720.t1 MTR_6g033605 32.927 82 54 1 457 537 30 111 1.53e-12 64.7
MS.gene041720.t1 MTR_0521s0010 26.519 181 102 2 50 213 34 200 1.76e-12 67.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 153 sgRNAs with CRISPR-Local

Find 215 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTTCTGTGGCAAGGATTTC+TGG 0.139608 1.1:-69362739 None:intergenic
AAACTGGACCGTCGTGATTT+TGG 0.142859 1.1:+69361039 MS.gene041720:CDS
CAATCCAGCCTTGTTTCTTA+TGG 0.243933 1.1:-69362456 None:intergenic
CGGTCCAGTTTGGATATTAT+TGG 0.264347 1.1:-69361027 None:intergenic
ATCCATGGGTGCAGTGTATT+GGG 0.290852 1.1:-69362964 None:intergenic
CATTAGACATTGCCGTGGTT+TGG 0.309583 1.1:+69361235 MS.gene041720:intron
AAGGAGCAGATCACAATATT+AGG 0.318102 1.1:-69360476 None:intergenic
CTCATCATTGCCATCTCACT+TGG 0.320277 1.1:-69360593 None:intergenic
TGTCACGCTGAATGAACTTT+AGG 0.324413 1.1:-69361336 None:intergenic
ACAAATGCAGATTTGATTAG+AGG 0.328195 1.1:+69361502 MS.gene041720:CDS
ATTAGACATTGCCGTGGTTT+GGG 0.336423 1.1:+69361236 MS.gene041720:intron
CCGAGGTTCATTACTTCATC+AGG 0.337428 1.1:+69362518 MS.gene041720:CDS
GATATATCGGATAATGGATA+TGG 0.364913 1.1:-69362485 None:intergenic
CCTACCACACTTACGATTGT+TGG 0.366401 1.1:+69362761 MS.gene041720:CDS
ACCTCTGCGATGTGCAAATC+AGG 0.368835 1.1:-69362868 None:intergenic
ATCGTCAAGGTCATAAGATT+TGG 0.374229 1.1:-69360958 None:intergenic
ACATCGCAGAGGTTGGTTGC+AGG 0.375369 1.1:+69362878 MS.gene041720:CDS
ACAACAATGATATTGTTGTT+TGG 0.386359 1.1:-69362305 None:intergenic
ACCTCAATCTCATTGTTCAT+TGG 0.386489 1.1:-69360826 None:intergenic
GATATTTATAACATTGTAGA+TGG 0.391221 1.1:+69362386 MS.gene041720:CDS
GACTTCGTCTGATGTCCTCT+CGG 0.399084 1.1:+69362586 MS.gene041720:CDS
TATCCATGGGTGCAGTGTAT+TGG 0.399336 1.1:-69362965 None:intergenic
ACTTCAGACAAGGCTGGTCT+AGG 0.399428 1.1:+69362357 MS.gene041720:CDS
GCAAGGGATATATCGGATAA+TGG 0.403725 1.1:-69362491 None:intergenic
AAAATCACGACGGTCCAGTT+TGG 0.405460 1.1:-69361037 None:intergenic
ATGCTATGATTGGTGGTGAT+TGG 0.409098 1.1:+69362843 MS.gene041720:CDS
TACTCCAATAATATCCAAAC+TGG 0.412151 1.1:+69361023 MS.gene041720:CDS
GGATGTTAACTCAGGATGTT+TGG 0.412783 1.1:+69361113 MS.gene041720:CDS
TGCATGCTGCAAATCAGCTT+TGG 0.415627 1.1:-69360524 None:intergenic
CATAAGAAACAAGGCTGGAT+TGG 0.419848 1.1:+69362457 MS.gene041720:CDS
AACCAGACTTTGCCGTGGTA+TGG 0.440028 1.1:+69362710 MS.gene041720:intron
CACTATTGAATTGACTTACT+CGG 0.440432 1.1:+69361092 MS.gene041720:CDS
TTGATTACGTTGGATTTGCC+TGG 0.442541 1.1:+69361305 MS.gene041720:CDS
GTGTACAATTGAAGGTGATT+GGG 0.443885 1.1:+69361369 MS.gene041720:CDS
AAACCTATGGTCAGCGGCAG+TGG 0.455398 1.1:+69362995 MS.gene041720:CDS
GAACTTTAGGTCACATCTCC+AGG 0.457339 1.1:-69361323 None:intergenic
ACTCCTATGTGTACAATTGA+AGG 0.457401 1.1:+69361361 MS.gene041720:CDS
CGGCAACGCAAGGGATATAT+CGG 0.461190 1.1:-69362498 None:intergenic
CAGACATAGTGTCAAATTCA+AGG 0.463743 1.1:-69360625 None:intergenic
GACAAAGATAACACAGTCCT+TGG 0.465488 1.1:+69362929 MS.gene041720:CDS
TGTGTACAATTGAAGGTGAT+TGG 0.473160 1.1:+69361368 MS.gene041720:CDS
TCATCATTGCCATCTCACTT+GGG 0.476104 1.1:-69360592 None:intergenic
TTCGATAGACCTTGCGGTCA+CGG 0.478744 1.1:+69361429 MS.gene041720:CDS
CTGTGCGAAGGGACCTGTCT+CGG 0.479542 1.1:+69361700 MS.gene041720:CDS
TAGGTTTCACATAGTATCCA+TGG 0.490660 1.1:-69362979 None:intergenic
ATGGTCATGAGTAGTAGATT+AGG 0.500878 1.1:-69362437 None:intergenic
TGGGTCTATCTGAAATATGC+GGG 0.502250 1.1:+69362413 MS.gene041720:CDS
TTGGTCCGAACGGCTGTACA+TGG 0.502745 1.1:+69362780 MS.gene041720:CDS
ACAGTGAGGTCCGTATTTAT+CGG 0.505137 1.1:-69361280 None:intergenic
GAAGGGACCTGTCTCGGTTG+AGG 0.505460 1.1:+69361706 MS.gene041720:CDS
GCTTCTATATTCTGTTTCCA+AGG 0.505945 1.1:+69361556 MS.gene041720:CDS
TCTGCATTTGTAGACGGCAC+AGG 0.506847 1.1:-69361490 None:intergenic
GACTTCTACAACATTGAGCT+TGG 0.507615 1.1:+69360907 MS.gene041720:CDS
CCTTGCTTGAGTGTGGTCGT+TGG 0.508319 1.1:+69360495 MS.gene041720:CDS
TCACCACCAATCATAGCATA+AGG 0.511917 1.1:-69362839 None:intergenic
ACTTCGTCTGATGTCCTCTC+GGG 0.511997 1.1:+69362587 MS.gene041720:CDS
CATCTCCATGTACAGCCGTT+CGG 0.512529 1.1:-69362785 None:intergenic
GAGTATGCTGGAACAGATGT+CGG 0.514049 1.1:+69363066 MS.gene041720:CDS
AATATGCCTTATGCTATGAT+TGG 0.515256 1.1:+69362833 MS.gene041720:CDS
TCCAATGAACAATGAGATTG+AGG 0.518221 1.1:+69360825 MS.gene041720:CDS
AGCTTTATATGAGGAAAGGT+TGG 0.518511 1.1:+69360872 MS.gene041720:CDS
GATAAGTCCTCAACCGAGAC+AGG 0.525131 1.1:-69361713 None:intergenic
CGACCACTGCCGCTGACCAT+AGG 0.527761 1.1:-69362998 None:intergenic
ACCCCAATACACTGCACCCA+TGG 0.533195 1.1:+69362962 MS.gene041720:CDS
CAGTGGTCGATATGTGTACC+AGG 0.539166 1.1:+69363012 MS.gene041720:CDS
ATTATTGGAGTAGTGTGAGC+AGG 0.541688 1.1:-69361012 None:intergenic
TAATGAACCTCGGCAACGCA+AGG 0.541750 1.1:-69362508 None:intergenic
TGATGTCCTCTCGGGCACTT+TGG 0.543138 1.1:+69362595 MS.gene041720:CDS
TTGCAAGGCGAAGAGTATGC+TGG 0.545573 1.1:+69363054 MS.gene041720:CDS
ATAACATTGTAGATGGTGCA+TGG 0.547247 1.1:+69362393 MS.gene041720:CDS
CGAGGTTCATTACTTCATCA+GGG 0.547766 1.1:+69362519 MS.gene041720:CDS
CATATTATTTGCAACAGCGA+AGG 0.553325 1.1:-69362816 None:intergenic
CTTCAGACAAGGCTGGTCTA+GGG 0.553757 1.1:+69362358 MS.gene041720:CDS
CGTGTTACCTCCGATAAATA+CGG 0.556373 1.1:+69361270 MS.gene041720:CDS
AACGACCTTCGACAAACCTA+CGG 0.556786 1.1:-69361408 None:intergenic
AGTATGCTGGAACAGATGTC+GGG 0.557360 1.1:+69363067 MS.gene041720:CDS
CTTACGATTGTTGGTCCGAA+CGG 0.558198 1.1:+69362770 MS.gene041720:CDS
CTCACTGTCATTGATTACGT+TGG 0.558362 1.1:+69361295 MS.gene041720:CDS
TATATGAGGAAAGGTTGGTA+TGG 0.559929 1.1:+69360877 MS.gene041720:CDS
GATTTGCACATCGCAGAGGT+TGG 0.560790 1.1:+69362871 MS.gene041720:CDS
GGACTGTGTTATCTTTGTCA+TGG 0.561082 1.1:-69362925 None:intergenic
TCTTCTCCTCCGTGACCGCA+AGG 0.561112 1.1:-69361438 None:intergenic
TGGATACTATGTGAAACCTA+TGG 0.563204 1.1:+69362982 MS.gene041720:CDS
TCAGACTGCAATATGAACCT+TGG 0.563823 1.1:-69361532 None:intergenic
TGCAGTGTATTGGGGTATGT+CGG 0.565836 1.1:-69362955 None:intergenic
CTGCATTTGTAGACGGCACA+GGG 0.566431 1.1:-69361489 None:intergenic
TGATTAGAGGCATTGATCCA+AGG 0.567311 1.1:+69361515 MS.gene041720:CDS
ATATATCCCTTGCGTTGCCG+AGG 0.568869 1.1:+69362501 MS.gene041720:CDS
TGTGGTAGGTTTCTGTGGCA+AGG 0.569531 1.1:-69362747 None:intergenic
GACAAGCTTTATATGAGGAA+AGG 0.570103 1.1:+69360868 MS.gene041720:CDS
ATCTCACTTGGGGTATACGT+TGG 0.570410 1.1:-69360581 None:intergenic
TAACATTGTAGATGGTGCAT+GGG 0.570614 1.1:+69362394 MS.gene041720:CDS
ACTTACTCGGATGTTAACTC+AGG 0.572912 1.1:+69361105 MS.gene041720:CDS
GAAAGGTTGGTATGGACTGA+AGG 0.575278 1.1:+69360885 MS.gene041720:CDS
GAGGCGACAAGCTTTATATG+AGG 0.576586 1.1:+69360863 MS.gene041720:CDS
ACAAGGCTGGTCTAGGGTGA+AGG 0.576887 1.1:+69362364 MS.gene041720:CDS
CATCATTGCCATCTCACTTG+GGG 0.579124 1.1:-69360591 None:intergenic
AACGTATACCCCAAGTGAGA+TGG 0.579805 1.1:+69360583 MS.gene041720:CDS
AAATCTGTTGTTGATCGTCA+AGG 0.579813 1.1:-69360971 None:intergenic
ACAACATTGAGCTTGGTGCA+TGG 0.580204 1.1:+69360914 MS.gene041720:CDS
CCAACAATCGTAAGTGTGGT+AGG 0.580385 1.1:-69362761 None:intergenic
CGAGACAGGTCCCTTCGCAC+AGG 0.583465 1.1:-69361699 None:intergenic
ACGACCTTCGACAAACCTAC+GGG 0.584033 1.1:-69361407 None:intergenic
AGGTCTACTTCAGACAAGGC+TGG 0.585540 1.1:+69362351 MS.gene041720:CDS
ATCTGCTCCTTGCTTGAGTG+TGG 0.585624 1.1:+69360488 MS.gene041720:CDS
ATCAAATCTGCATTTGTAGA+CGG 0.590289 1.1:-69361496 None:intergenic
GCATGAAAATGTTGTAGGTG+GGG 0.592686 1.1:+69360544 MS.gene041720:CDS
TCACTATCTCAAATATTGCA+AGG 0.596203 1.1:+69363039 MS.gene041720:CDS
TGCATGAAAATGTTGTAGGT+GGG 0.596497 1.1:+69360543 MS.gene041720:CDS
ATGACCATAAGAAACAAGGC+TGG 0.597597 1.1:+69362452 MS.gene041720:CDS
CGACCTCGATCCTGTGCGAA+GGG 0.601460 1.1:+69361689 MS.gene041720:CDS
ATGCCTTATGCTATGATTGG+TGG 0.601798 1.1:+69362836 MS.gene041720:CDS
TTGGGGTATGTCGGAAACCA+AGG 0.606539 1.1:-69362946 None:intergenic
AATGAACCTCGGCAACGCAA+GGG 0.607154 1.1:-69362507 None:intergenic
AGCATGCATGAAAATGTTGT+AGG 0.609002 1.1:+69360539 MS.gene041720:CDS
TGTACAATTGAAGGTGATTG+GGG 0.612279 1.1:+69361370 MS.gene041720:CDS
GTAAGTGTGGTAGGTTTCTG+TGG 0.617237 1.1:-69362752 None:intergenic
CCAACGACCACACTCAAGCA+AGG 0.618711 1.1:-69360495 None:intergenic
GAGCAGATCACAATATTAGG+AGG 0.621127 1.1:-69360473 None:intergenic
AGGTTTCACATAGTATCCAT+GGG 0.622147 1.1:-69362978 None:intergenic
CAACAGCGAACTTAACTGCA+TGG 0.624703 1.1:-69362901 None:intergenic
CATGAAAATGTTGTAGGTGG+GGG 0.624750 1.1:+69360545 MS.gene041720:CDS
TCCATGGGTGCAGTGTATTG+GGG 0.627336 1.1:-69362963 None:intergenic
ATGCATGAAAATGTTGTAGG+TGG 0.627822 1.1:+69360542 MS.gene041720:CDS
ACCTGATTTGCACATCGCAG+AGG 0.634639 1.1:+69362867 MS.gene041720:CDS
GGACAATATGTAAGGCCCGT+AGG 0.636455 1.1:+69361392 MS.gene041720:CDS
TCACCTTCAATTGTACACAT+AGG 0.636668 1.1:-69361364 None:intergenic
ATGGGTCTATCTGAAATATG+CGG 0.636801 1.1:+69362412 MS.gene041720:CDS
ACGACCTCGATCCTGTGCGA+AGG 0.639634 1.1:+69361688 MS.gene041720:CDS
ATCTGCATTAGACATTGCCG+TGG 0.643012 1.1:+69361230 MS.gene041720:intron
GGTCCCTTCGCACAGGATCG+AGG 0.647508 1.1:-69361692 None:intergenic
TTCTGGCAGAAGCCATACCA+CGG 0.648051 1.1:-69362722 None:intergenic
GGCAAGGTCTACTTCAGACA+AGG 0.649008 1.1:+69362347 MS.gene041720:CDS
CCTGATGAAGTAATGAACCT+CGG 0.649312 1.1:-69362518 None:intergenic
CGCTTACAGAACCCAAACCA+CGG 0.655051 1.1:-69361247 None:intergenic
TTATTTAGCAGTTAAAGGCG+AGG 0.655685 1.1:+69362219 MS.gene041720:intron
GAGGTTCATTACTTCATCAG+GGG 0.659487 1.1:+69362520 MS.gene041720:CDS
CAAGTGAGATGGCAATGATG+AGG 0.660753 1.1:+69360594 MS.gene041720:CDS
ACTCATGACCATAAGAAACA+AGG 0.663177 1.1:+69362448 MS.gene041720:CDS
TCAAAATCTTGACAGATGTG+CGG 0.663839 1.1:-69362565 None:intergenic
CGGACCAACAATCGTAAGTG+TGG 0.667344 1.1:-69362765 None:intergenic
ATTTGAGATAGTGATTGACC+TGG 0.673697 1.1:-69363030 None:intergenic
GGGTCTATCTGAAATATGCG+GGG 0.673953 1.1:+69362414 MS.gene041720:CDS
TATATACCAAAGTGCCCGAG+AGG 0.678235 1.1:-69362601 None:intergenic
AAGGCCCGTAGGTTTGTCGA+AGG 0.678246 1.1:+69361403 MS.gene041720:CDS
TGTTTAACCAGACTTTGCCG+TGG 0.679547 1.1:+69362705 MS.gene041720:intron
GTGAGGTCCGTATTTATCGG+AGG 0.693002 1.1:-69361277 None:intergenic
AGGTCGTTCGATAGACCTTG+CGG 0.706168 1.1:+69361423 MS.gene041720:CDS
TATGTGAAACCTATGGTCAG+CGG 0.713139 1.1:+69362989 MS.gene041720:CDS
GAGGTTCGACTGTATCGCAG+AGG 0.730544 1.1:+69360844 MS.gene041720:CDS
CAACGTAATCAATGACAGTG+AGG 0.734984 1.1:-69361294 None:intergenic
GATAGACCTTGCGGTCACGG+AGG 0.760484 1.1:+69361432 MS.gene041720:CDS
GTACAATTGAAGGTGATTGG+GGG 0.819509 1.1:+69361371 MS.gene041720:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAACCATATAAATTCAT+TGG - chr1.1:69361652-69361671 None:intergenic 15.0%
!! GGTTAATATAATTAGATATT+TGG + chr1.1:69362637-69362656 MS.gene041720:intron 15.0%
!! TACATTCTAATTTGAATATA+TGG + chr1.1:69361892-69361911 MS.gene041720:intron 15.0%
!!! TATGTTAACATTTTCTATTA+TGG + chr1.1:69362167-69362186 MS.gene041720:intron 15.0%
!! AGAAATAAACAATAACACAA+CGG - chr1.1:69361165-69361184 None:intergenic 20.0%
!! ATGTTAACATAAATTTATGC+CGG - chr1.1:69362158-69362177 None:intergenic 20.0%
!! GATATTTATAACATTGTAGA+TGG + chr1.1:69362386-69362405 MS.gene041720:CDS 20.0%
!!! AACTAACGTACAAATTTTTT+CGG - chr1.1:69362057-69362076 None:intergenic 20.0%
! ATTTCGTTCATTCGATTATA+AGG + chr1.1:69362662-69362681 MS.gene041720:intron 25.0%
! GTTTCCTATCTAATATCATA+AGG + chr1.1:69362189-69362208 MS.gene041720:intron 25.0%
! TTAGCATCAAACACATTTAT+TGG - chr1.1:69360710-69360729 None:intergenic 25.0%
! TTTCTGTTTGTGTTTAGTAA+CGG + chr1.1:69361194-69361213 MS.gene041720:intron 25.0%
!! AAATTTTCACGACAACAATA+AGG + chr1.1:69361865-69361884 MS.gene041720:intron 25.0%
!! ACAACAATGATATTGTTGTT+TGG - chr1.1:69362308-69362327 None:intergenic 25.0%
!! GGTATATAATTTGCACTAAT+TGG + chr1.1:69362616-69362635 MS.gene041720:intron 25.0%
!! TATATGTTGTTTATTCTGTC+CGG + chr1.1:69361606-69361625 MS.gene041720:intron 25.0%
AACAACATATACTTCAGTTC+AGG - chr1.1:69361597-69361616 None:intergenic 30.0%
AAGGTTATCTTACTGTTTGT+TGG + chr1.1:69362681-69362700 MS.gene041720:intron 30.0%
AATATGCCTTATGCTATGAT+TGG + chr1.1:69362833-69362852 MS.gene041720:CDS 30.0%
ACAAATGCAGATTTGATTAG+AGG + chr1.1:69361502-69361521 MS.gene041720:CDS 30.0%
ACAACATATACTTCAGTTCA+GGG - chr1.1:69361596-69361615 None:intergenic 30.0%
ACGAATAACAATCAAATTGC+CGG - chr1.1:69361628-69361647 None:intergenic 30.0%
AGTTATCATAAACTCTGTCT+AGG + chr1.1:69362014-69362033 MS.gene041720:intron 30.0%
ATCAAATCTGCATTTGTAGA+CGG - chr1.1:69361499-69361518 None:intergenic 30.0%
CACACCTTATGATATTAGAT+AGG - chr1.1:69362196-69362215 None:intergenic 30.0%
CAGATATACTTTCTTATGTC+CGG + chr1.1:69362136-69362155 MS.gene041720:intron 30.0%
GTTGAAGTTCAGAAAAAGAA+TGG + chr1.1:69362326-69362345 MS.gene041720:CDS 30.0%
TACTCCAATAATATCCAAAC+TGG + chr1.1:69361023-69361042 MS.gene041720:CDS 30.0%
TAGTCTTTCAAAAAGCAGTT+AGG - chr1.1:69360769-69360788 None:intergenic 30.0%
TATGTCCTCATCTATTAGAA+TGG - chr1.1:69360680-69360699 None:intergenic 30.0%
TCACTATCTCAAATATTGCA+AGG + chr1.1:69363039-69363058 MS.gene041720:CDS 30.0%
TCTATTACTCTCTACAAATC+CGG - chr1.1:69361950-69361969 None:intergenic 30.0%
TTCGTGCCAATGAATTTATA+TGG + chr1.1:69361643-69361662 MS.gene041720:intron 30.0%
! AACAAAACTTGGTGGTTAAA+AGG - chr1.1:69361820-69361839 None:intergenic 30.0%
! ACTTCTTTTGCAAAACATGA+AGG - chr1.1:69362248-69362267 None:intergenic 30.0%
! CACTATTGAATTGACTTACT+CGG + chr1.1:69361092-69361111 MS.gene041720:CDS 30.0%
! TCATGTTTTGCAAAAGAAGT+AGG + chr1.1:69362248-69362267 MS.gene041720:CDS 30.0%
! TGTCCTTATTTAGCAGTTAA+AGG + chr1.1:69362214-69362233 MS.gene041720:intron 30.0%
! TGTTAATTTTCGTAGGGAAT+GGG + chr1.1:69360736-69360755 MS.gene041720:intron 30.0%
!! GATATATCGGATAATGGATA+TGG - chr1.1:69362488-69362507 None:intergenic 30.0%
!!! AACTGCTTTTTGAAAGACTA+TGG + chr1.1:69360769-69360788 MS.gene041720:CDS 30.0%
!!! ATTTGTACGTTAGTTTTGTG+CGG + chr1.1:69362062-69362081 MS.gene041720:intron 30.0%
AAATCTGTTGTTGATCGTCA+AGG - chr1.1:69360974-69360993 None:intergenic 35.0%
AACGCAGCATAAACAAAACT+TGG - chr1.1:69361831-69361850 None:intergenic 35.0%
AAGGAGCAGATCACAATATT+AGG - chr1.1:69360479-69360498 None:intergenic 35.0%
ACCTCAATCTCATTGTTCAT+TGG - chr1.1:69360829-69360848 None:intergenic 35.0%
ACTCATGACCATAAGAAACA+AGG + chr1.1:69362448-69362467 MS.gene041720:CDS 35.0%
ACTCCTATGTGTACAATTGA+AGG + chr1.1:69361361-69361380 MS.gene041720:CDS 35.0%
AGCATGCATGAAAATGTTGT+AGG + chr1.1:69360539-69360558 MS.gene041720:CDS 35.0%
AGGTTTCACATAGTATCCAT+GGG - chr1.1:69362981-69363000 None:intergenic 35.0%
AGTTCAGAAAAAGAATGGCA+AGG + chr1.1:69362331-69362350 MS.gene041720:CDS 35.0%
ATAACATTGTAGATGGTGCA+TGG + chr1.1:69362393-69362412 MS.gene041720:CDS 35.0%
ATCGTCAAGGTCATAAGATT+TGG - chr1.1:69360961-69360980 None:intergenic 35.0%
ATGCATGAAAATGTTGTAGG+TGG + chr1.1:69360542-69360561 MS.gene041720:CDS 35.0%
ATGGTCATGAGTAGTAGATT+AGG - chr1.1:69362440-69362459 None:intergenic 35.0%
CAGACATAGTGTCAAATTCA+AGG - chr1.1:69360628-69360647 None:intergenic 35.0%
CATATTATTTGCAACAGCGA+AGG - chr1.1:69362819-69362838 None:intergenic 35.0%
CATCAAACACATTTATTGGC+AGG - chr1.1:69360706-69360725 None:intergenic 35.0%
GCTTCTATATTCTGTTTCCA+AGG + chr1.1:69361556-69361575 MS.gene041720:CDS 35.0%
GTGTACAATTGAAGGTGATT+GGG + chr1.1:69361369-69361388 MS.gene041720:CDS 35.0%
TAACATTGTAGATGGTGCAT+GGG + chr1.1:69362394-69362413 MS.gene041720:CDS 35.0%
TAGGTTTCACATAGTATCCA+TGG - chr1.1:69362982-69363001 None:intergenic 35.0%
TCAAAATCTTGACAGATGTG+CGG - chr1.1:69362568-69362587 None:intergenic 35.0%
TCACCTTCAATTGTACACAT+AGG - chr1.1:69361367-69361386 None:intergenic 35.0%
TCCAATGAACAATGAGATTG+AGG + chr1.1:69360825-69360844 MS.gene041720:CDS 35.0%
TCCTCATCTATTAGAATGGT+CGG - chr1.1:69360676-69360695 None:intergenic 35.0%
TCGCCTTTAACTGCTAAATA+AGG - chr1.1:69362220-69362239 None:intergenic 35.0%
TGCATGAAAATGTTGTAGGT+GGG + chr1.1:69360543-69360562 MS.gene041720:CDS 35.0%
TGGATACTATGTGAAACCTA+TGG + chr1.1:69362982-69363001 MS.gene041720:CDS 35.0%
TGTACAATTGAAGGTGATTG+GGG + chr1.1:69361370-69361389 MS.gene041720:CDS 35.0%
TGTGTACAATTGAAGGTGAT+TGG + chr1.1:69361368-69361387 MS.gene041720:CDS 35.0%
TTATTTAGCAGTTAAAGGCG+AGG + chr1.1:69362219-69362238 MS.gene041720:intron 35.0%
! AGCTTTATATGAGGAAAGGT+TGG + chr1.1:69360872-69360891 MS.gene041720:CDS 35.0%
! ATATGGTTGAAGAGTGTAAG+TGG + chr1.1:69361909-69361928 MS.gene041720:intron 35.0%
! ATGGGTCTATCTGAAATATG+CGG + chr1.1:69362412-69362431 MS.gene041720:CDS 35.0%
! ATTTGAGATAGTGATTGACC+TGG - chr1.1:69363033-69363052 None:intergenic 35.0%
! CATGTCTGAAATAGAAACCA+TGG + chr1.1:69362098-69362117 MS.gene041720:intron 35.0%
! GACAAGCTTTATATGAGGAA+AGG + chr1.1:69360868-69360887 MS.gene041720:CDS 35.0%
! GATCAACAACAGATTTTTCG+AGG + chr1.1:69360978-69360997 MS.gene041720:CDS 35.0%
! GTGTTAATTTTCGTAGGGAA+TGG + chr1.1:69360735-69360754 MS.gene041720:intron 35.0%
!! TATATGAGGAAAGGTTGGTA+TGG + chr1.1:69360877-69360896 MS.gene041720:CDS 35.0%
!! TGCTTTTTGAAAGACTATGG+TGG + chr1.1:69360772-69360791 MS.gene041720:CDS 35.0%
ACAGTGAGGTCCGTATTTAT+CGG - chr1.1:69361283-69361302 None:intergenic 40.0%
ACTTACTCGGATGTTAACTC+AGG + chr1.1:69361105-69361124 MS.gene041720:CDS 40.0%
AGGATGTTTGGTATTCACTG+TGG + chr1.1:69361125-69361144 MS.gene041720:intron 40.0%
ATGACCATAAGAAACAAGGC+TGG + chr1.1:69362452-69362471 MS.gene041720:CDS 40.0%
ATGCCTTATGCTATGATTGG+TGG + chr1.1:69362836-69362855 MS.gene041720:CDS 40.0%
ATTAGACATTGCCGTGGTTT+GGG + chr1.1:69361236-69361255 MS.gene041720:intron 40.0%
ATTATTGGAGTAGTGTGAGC+AGG - chr1.1:69361015-69361034 None:intergenic 40.0%
CAACGTAATCAATGACAGTG+AGG - chr1.1:69361297-69361316 None:intergenic 40.0%
CATAAGAAACAAGGCTGGAT+TGG + chr1.1:69362457-69362476 MS.gene041720:CDS 40.0%
CATGAAAATGTTGTAGGTGG+GGG + chr1.1:69360545-69360564 MS.gene041720:CDS 40.0%
CCTGATGAAGTAATGAACCT+CGG - chr1.1:69362521-69362540 None:intergenic 40.0%
CGAGGTTCATTACTTCATCA+GGG + chr1.1:69362519-69362538 MS.gene041720:CDS 40.0%
CGGTCCAGTTTGGATATTAT+TGG - chr1.1:69361030-69361049 None:intergenic 40.0%
CGTGTTACCTCCGATAAATA+CGG + chr1.1:69361270-69361289 MS.gene041720:CDS 40.0%
GACAAAGATAACACAGTCCT+TGG + chr1.1:69362929-69362948 MS.gene041720:CDS 40.0%
GACTTCTACAACATTGAGCT+TGG + chr1.1:69360907-69360926 MS.gene041720:CDS 40.0%
GAGCAGATCACAATATTAGG+AGG - chr1.1:69360476-69360495 None:intergenic 40.0%
GAGGTTCATTACTTCATCAG+GGG + chr1.1:69362520-69362539 MS.gene041720:CDS 40.0%
GCAAGGGATATATCGGATAA+TGG - chr1.1:69362494-69362513 None:intergenic 40.0%
GCAGCATAAACAAAACTTGG+TGG - chr1.1:69361828-69361847 None:intergenic 40.0%
GCATGAAAATGTTGTAGGTG+GGG + chr1.1:69360544-69360563 MS.gene041720:CDS 40.0%
GGACTGTGTTATCTTTGTCA+TGG - chr1.1:69362928-69362947 None:intergenic 40.0%
GGATGTTAACTCAGGATGTT+TGG + chr1.1:69361113-69361132 MS.gene041720:CDS 40.0%
GGGTACAAAATGCATAACCT+TGG - chr1.1:69361576-69361595 None:intergenic 40.0%
GTACAATTGAAGGTGATTGG+GGG + chr1.1:69361371-69361390 MS.gene041720:CDS 40.0%
GTGGATAAAATGATGCAGAC+CGG + chr1.1:69361928-69361947 MS.gene041720:intron 40.0%
TATGTGAAACCTATGGTCAG+CGG + chr1.1:69362989-69363008 MS.gene041720:CDS 40.0%
TCACCACCAATCATAGCATA+AGG - chr1.1:69362842-69362861 None:intergenic 40.0%
TCAGACTGCAATATGAACCT+TGG - chr1.1:69361535-69361554 None:intergenic 40.0%
TCATCATTGCCATCTCACTT+GGG - chr1.1:69360595-69360614 None:intergenic 40.0%
TCCGACCATTCTAATAGATG+AGG + chr1.1:69360672-69360691 MS.gene041720:intron 40.0%
TGACAGATAAAGTTCAGCCA+TGG - chr1.1:69362118-69362137 None:intergenic 40.0%
TGATTGGGGGACAATATGTA+AGG + chr1.1:69361384-69361403 MS.gene041720:CDS 40.0%
TGCGGAAAAAATGCACTAAC+TGG - chr1.1:69362550-69362569 None:intergenic 40.0%
TGTCACGCTGAATGAACTTT+AGG - chr1.1:69361339-69361358 None:intergenic 40.0%
TTGATTACGTTGGATTTGCC+TGG + chr1.1:69361305-69361324 MS.gene041720:CDS 40.0%
! AATTTTCGTAGGGAATGGGT+CGG + chr1.1:69360740-69360759 MS.gene041720:intron 40.0%
! ATGCGCGTGTTAATTTTCGT+AGG + chr1.1:69360729-69360748 MS.gene041720:intron 40.0%
! CTCACTGTCATTGATTACGT+TGG + chr1.1:69361295-69361314 MS.gene041720:CDS 40.0%
! TGCGCGTGTTAATTTTCGTA+GGG + chr1.1:69360730-69360749 MS.gene041720:intron 40.0%
! TGGGTCTATCTGAAATATGC+GGG + chr1.1:69362413-69362432 MS.gene041720:CDS 40.0%
!! ATGCTATGATTGGTGGTGAT+TGG + chr1.1:69362843-69362862 MS.gene041720:CDS 40.0%
!! CAATCCAGCCTTGTTTCTTA+TGG - chr1.1:69362459-69362478 None:intergenic 40.0%
!! TGATTAGAGGCATTGATCCA+AGG + chr1.1:69361515-69361534 MS.gene041720:CDS 40.0%
AAAATCACGACGGTCCAGTT+TGG - chr1.1:69361040-69361059 None:intergenic 45.0%
AACGACCTTCGACAAACCTA+CGG - chr1.1:69361411-69361430 None:intergenic 45.0%
AACGTATACCCCAAGTGAGA+TGG + chr1.1:69360583-69360602 MS.gene041720:CDS 45.0%
AATTCCCCCCAAAATCACGA+CGG - chr1.1:69361050-69361069 None:intergenic 45.0%
AGTATGCTGGAACAGATGTC+GGG + chr1.1:69363067-69363086 MS.gene041720:CDS 45.0%
ATCCATGGGTGCAGTGTATT+GGG - chr1.1:69362967-69362986 None:intergenic 45.0%
ATCTCACTTGGGGTATACGT+TGG - chr1.1:69360584-69360603 None:intergenic 45.0%
ATCTGCATTAGACATTGCCG+TGG + chr1.1:69361230-69361249 MS.gene041720:intron 45.0%
CAACAGCGAACTTAACTGCA+TGG - chr1.1:69362904-69362923 None:intergenic 45.0%
CAAGTGAGATGGCAATGATG+AGG + chr1.1:69360594-69360613 MS.gene041720:CDS 45.0%
CATCATTGCCATCTCACTTG+GGG - chr1.1:69360594-69360613 None:intergenic 45.0%
CATTAGACATTGCCGTGGTT+TGG + chr1.1:69361235-69361254 MS.gene041720:intron 45.0%
CCAACAATCGTAAGTGTGGT+AGG - chr1.1:69362764-69362783 None:intergenic 45.0%
CCGAGGTTCATTACTTCATC+AGG + chr1.1:69362518-69362537 MS.gene041720:CDS 45.0%
CCTACCACACTTACGATTGT+TGG + chr1.1:69362761-69362780 MS.gene041720:CDS 45.0%
CTCATCATTGCCATCTCACT+TGG - chr1.1:69360596-69360615 None:intergenic 45.0%
CTTACGATTGTTGGTCCGAA+CGG + chr1.1:69362770-69362789 MS.gene041720:CDS 45.0%
GAACTTTAGGTCACATCTCC+AGG - chr1.1:69361326-69361345 None:intergenic 45.0%
GAGTATGCTGGAACAGATGT+CGG + chr1.1:69363066-69363085 MS.gene041720:CDS 45.0%
GTAAGTGTGGTAGGTTTCTG+TGG - chr1.1:69362755-69362774 None:intergenic 45.0%
GTTTCTGTGGCAAGGATTTC+TGG - chr1.1:69362742-69362761 None:intergenic 45.0%
TATCCATGGGTGCAGTGTAT+TGG - chr1.1:69362968-69362987 None:intergenic 45.0%
TGCAGTGTATTGGGGTATGT+CGG - chr1.1:69362958-69362977 None:intergenic 45.0%
TGCATGCTGCAAATCAGCTT+TGG - chr1.1:69360527-69360546 None:intergenic 45.0%
TGTTTAACCAGACTTTGCCG+TGG + chr1.1:69362705-69362724 MS.gene041720:intron 45.0%
! AAACTGGACCGTCGTGATTT+TGG + chr1.1:69361039-69361058 MS.gene041720:CDS 45.0%
! AACTGGACCGTCGTGATTTT+GGG + chr1.1:69361040-69361059 MS.gene041720:CDS 45.0%
! GAGGCGACAAGCTTTATATG+AGG + chr1.1:69360863-69360882 MS.gene041720:CDS 45.0%
! GGGTCTATCTGAAATATGCG+GGG + chr1.1:69362414-69362433 MS.gene041720:CDS 45.0%
! TATATACCAAAGTGCCCGAG+AGG - chr1.1:69362604-69362623 None:intergenic 45.0%
!! ACAACATTGAGCTTGGTGCA+TGG + chr1.1:69360914-69360933 MS.gene041720:CDS 45.0%
!! GAAAGGTTGGTATGGACTGA+AGG + chr1.1:69360885-69360904 MS.gene041720:CDS 45.0%
!! TCGTGATTTTGGGGGGAATT+TGG + chr1.1:69361050-69361069 MS.gene041720:CDS 45.0%
!!! TGTACGTTAGTTTTGTGCGG+TGG + chr1.1:69362065-69362084 MS.gene041720:intron 45.0%
AACCAGACTTTGCCGTGGTA+TGG + chr1.1:69362710-69362729 MS.gene041720:intron 50.0%
AATGAACCTCGGCAACGCAA+GGG - chr1.1:69362510-69362529 None:intergenic 50.0%
ACCTCTGCGATGTGCAAATC+AGG - chr1.1:69362871-69362890 None:intergenic 50.0%
ACGACCTTCGACAAACCTAC+GGG - chr1.1:69361410-69361429 None:intergenic 50.0%
ACTTCGTCTGATGTCCTCTC+GGG + chr1.1:69362587-69362606 MS.gene041720:CDS 50.0%
AGGTCGTTCGATAGACCTTG+CGG + chr1.1:69361423-69361442 MS.gene041720:CDS 50.0%
AGGTCTACTTCAGACAAGGC+TGG + chr1.1:69362351-69362370 MS.gene041720:CDS 50.0%
ATATATCCCTTGCGTTGCCG+AGG + chr1.1:69362501-69362520 MS.gene041720:CDS 50.0%
ATCTGCTCCTTGCTTGAGTG+TGG + chr1.1:69360488-69360507 MS.gene041720:CDS 50.0%
CAGTGGTCGATATGTGTACC+AGG + chr1.1:69363012-69363031 MS.gene041720:CDS 50.0%
CATCTCCATGTACAGCCGTT+CGG - chr1.1:69362788-69362807 None:intergenic 50.0%
CGCTTACAGAACCCAAACCA+CGG - chr1.1:69361250-69361269 None:intergenic 50.0%
CGGACCAACAATCGTAAGTG+TGG - chr1.1:69362768-69362787 None:intergenic 50.0%
CGGCAACGCAAGGGATATAT+CGG - chr1.1:69362501-69362520 None:intergenic 50.0%
CTGCATTTGTAGACGGCACA+GGG - chr1.1:69361492-69361511 None:intergenic 50.0%
GACTTCGTCTGATGTCCTCT+CGG + chr1.1:69362586-69362605 MS.gene041720:CDS 50.0%
GATAAGTCCTCAACCGAGAC+AGG - chr1.1:69361716-69361735 None:intergenic 50.0%
GATTTGCACATCGCAGAGGT+TGG + chr1.1:69362871-69362890 MS.gene041720:CDS 50.0%
GGACAATATGTAAGGCCCGT+AGG + chr1.1:69361392-69361411 MS.gene041720:CDS 50.0%
GGCAAGGTCTACTTCAGACA+AGG + chr1.1:69362347-69362366 MS.gene041720:CDS 50.0%
GTGAGGTCCGTATTTATCGG+AGG - chr1.1:69361280-69361299 None:intergenic 50.0%
TAATGAACCTCGGCAACGCA+AGG - chr1.1:69362511-69362530 None:intergenic 50.0%
TCCATGGGTGCAGTGTATTG+GGG - chr1.1:69362966-69362985 None:intergenic 50.0%
TCTGCATTTGTAGACGGCAC+AGG - chr1.1:69361493-69361512 None:intergenic 50.0%
TGTGGTAGGTTTCTGTGGCA+AGG - chr1.1:69362750-69362769 None:intergenic 50.0%
TTCGATAGACCTTGCGGTCA+CGG + chr1.1:69361429-69361448 MS.gene041720:CDS 50.0%
TTCTGGCAGAAGCCATACCA+CGG - chr1.1:69362725-69362744 None:intergenic 50.0%
TTGGGGTATGTCGGAAACCA+AGG - chr1.1:69362949-69362968 None:intergenic 50.0%
! ACCTGATTTGCACATCGCAG+AGG + chr1.1:69362867-69362886 MS.gene041720:CDS 50.0%
! ACTGGACCGTCGTGATTTTG+GGG + chr1.1:69361041-69361060 MS.gene041720:CDS 50.0%
! TTGCAAGGCGAAGAGTATGC+TGG + chr1.1:69363054-69363073 MS.gene041720:CDS 50.0%
!! ACTTCAGACAAGGCTGGTCT+AGG + chr1.1:69362357-69362376 MS.gene041720:CDS 50.0%
!! CTTCAGACAAGGCTGGTCTA+GGG + chr1.1:69362358-69362377 MS.gene041720:CDS 50.0%
AAACCTATGGTCAGCGGCAG+TGG + chr1.1:69362995-69363014 MS.gene041720:CDS 55.0%
AAGGCCCGTAGGTTTGTCGA+AGG + chr1.1:69361403-69361422 MS.gene041720:CDS 55.0%
ACCCCAATACACTGCACCCA+TGG + chr1.1:69362962-69362981 MS.gene041720:CDS 55.0%
AGCCATACCACGGCAAAGTC+TGG - chr1.1:69362715-69362734 None:intergenic 55.0%
CCAACGACCACACTCAAGCA+AGG - chr1.1:69360498-69360517 None:intergenic 55.0%
CCTTGCTTGAGTGTGGTCGT+TGG + chr1.1:69360495-69360514 MS.gene041720:CDS 55.0%
GAGGTTCGACTGTATCGCAG+AGG + chr1.1:69360844-69360863 MS.gene041720:CDS 55.0%
TGATGTCCTCTCGGGCACTT+TGG + chr1.1:69362595-69362614 MS.gene041720:CDS 55.0%
TTGGTCCGAACGGCTGTACA+TGG + chr1.1:69362780-69362799 MS.gene041720:CDS 55.0%
! ACATCGCAGAGGTTGGTTGC+AGG + chr1.1:69362878-69362897 MS.gene041720:CDS 55.0%
! CTGGACCGTCGTGATTTTGG+GGG + chr1.1:69361042-69361061 MS.gene041720:CDS 55.0%
! TGGACCGTCGTGATTTTGGG+GGG + chr1.1:69361043-69361062 MS.gene041720:CDS 55.0%
!! ACAAGGCTGGTCTAGGGTGA+AGG + chr1.1:69362364-69362383 MS.gene041720:CDS 55.0%
ACGACCTCGATCCTGTGCGA+AGG + chr1.1:69361688-69361707 MS.gene041720:CDS 60.0%
CGACCTCGATCCTGTGCGAA+GGG + chr1.1:69361689-69361708 MS.gene041720:CDS 60.0%
CTGTGCGAAGGGACCTGTCT+CGG + chr1.1:69361700-69361719 MS.gene041720:CDS 60.0%
GAAGGGACCTGTCTCGGTTG+AGG + chr1.1:69361706-69361725 MS.gene041720:CDS 60.0%
GATAGACCTTGCGGTCACGG+AGG + chr1.1:69361432-69361451 MS.gene041720:CDS 60.0%
TCTTCTCCTCCGTGACCGCA+AGG - chr1.1:69361441-69361460 None:intergenic 60.0%
CGACCACTGCCGCTGACCAT+AGG - chr1.1:69363001-69363020 None:intergenic 65.0%
CGAGACAGGTCCCTTCGCAC+AGG - chr1.1:69361702-69361721 None:intergenic 65.0%
GGTCCCTTCGCACAGGATCG+AGG - chr1.1:69361695-69361714 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr1.1 gene 69360470 69363093 69360470 ID=MS.gene041720
chr1.1 mRNA 69360470 69363093 69360470 ID=MS.gene041720.t1;Parent=MS.gene041720
chr1.1 exon 69360470 69360646 69360470 ID=MS.gene041720.t1.exon1;Parent=MS.gene041720.t1
chr1.1 CDS 69360470 69360646 69360470 ID=cds.MS.gene041720.t1;Parent=MS.gene041720.t1
chr1.1 exon 69360751 69361134 69360751 ID=MS.gene041720.t1.exon2;Parent=MS.gene041720.t1
chr1.1 CDS 69360751 69361134 69360751 ID=cds.MS.gene041720.t1;Parent=MS.gene041720.t1
chr1.1 exon 69361241 69361577 69361241 ID=MS.gene041720.t1.exon3;Parent=MS.gene041720.t1
chr1.1 CDS 69361241 69361577 69361241 ID=cds.MS.gene041720.t1;Parent=MS.gene041720.t1
chr1.1 exon 69361679 69361758 69361679 ID=MS.gene041720.t1.exon4;Parent=MS.gene041720.t1
chr1.1 CDS 69361679 69361758 69361679 ID=cds.MS.gene041720.t1;Parent=MS.gene041720.t1
chr1.1 exon 69362230 69362616 69362230 ID=MS.gene041720.t1.exon5;Parent=MS.gene041720.t1
chr1.1 CDS 69362230 69362616 69362230 ID=cds.MS.gene041720.t1;Parent=MS.gene041720.t1
chr1.1 exon 69362716 69363093 69362716 ID=MS.gene041720.t1.exon6;Parent=MS.gene041720.t1
chr1.1 CDS 69362716 69363093 69362716 ID=cds.MS.gene041720.t1;Parent=MS.gene041720.t1
Gene Sequence

>MS.gene041720

ATGCCTCCTAATATTGTGATCTGCTCCTTGCTTGAGTGTGGTCGTTGGTTTTATCCAAAGCTGATTTGCAGCATGCATGAAAATGTTGTAGGTGGGGGTAACGACTTTCATCCAACGTATACCCCAAGTGAGATGGCAATGATGAGGACATACTTCCTTGAATTTGACACTATGTCTGTAAGTGTTGTTAAATAATTTTGTCTCCGACCATTCTAATAGATGAGGACATACTTCCTGCCAATAAATGTGTTTGATGCTAATGCGCGTGTTAATTTTCGTAGGGAATGGGTCGGATGCCTAACTGCTTTTTGAAAGACTATGGTGGTTATATTGAAGACTACGTTATGTTGCGAGATCCAATGAACAATGAGATTGAGGTTCGACTGTATCGCAGAGGCGACAAGCTTTATATGAGGAAAGGTTGGTATGGACTGAAGGACTTCTACAACATTGAGCTTGGTGCATGGATAGACTTGACATATGAAAGACCAAATCTTATGACCTTGACGATCAACAACAGATTTTTCGAGGAAATTTTGTATCCTGCTCACACTACTCCAATAATATCCAAACTGGACCGTCGTGATTTTGGGGGGAATTTGGATGATTTTTTTGAGACATTCACTATTGAATTGACTTACTCGGATGTTAACTCAGGATGTTTGGTATTCACTGTGGATTGCTTTATATTTCCGTTGTGTTATTGTTTATTTCTTAAATGATATTTCTGTTTGTGTTTAGTAACGGTGTTTATTATTTCATCTGCATTAGACATTGCCGTGGTTTGGGTTCTGTAAGCGCGTGTTACCTCCGATAAATACGGACCTCACTGTCATTGATTACGTTGGATTTGCCTGGAGATGTGACCTAAAGTTCATTCAGCGTGACAAGACTCCTATGTGTACAATTGAAGGTGATTGGGGGACAATATGTAAGGCCCGTAGGTTTGTCGAAGGTCGTTCGATAGACCTTGCGGTCACGGAGGAGAAGAATAATTATGTGCTTTACTTGAAATTTATCCCTGTGCCGTCTACAAATGCAGATTTGATTAGAGGCATTGATCCAAGGTTCATATTGCAGTCTGATGCTTCTATATTCTGTTTCCAAGGTTATGCATTTTGTACCCTGAACTGAAGTATATGTTGTTTATTCTGTCCGGCAATTTGATTGTTATTCGTGCCAATGAATTTATATGGTTTTTTATTACAGACTCTGCTAACGACCTCGATCCTGTGCGAAGGGACCTGTCTCGGTTGAGGACTTATCGTCTCGAGCTAGATAGCGACATTGTGAGATCTCTGTCTTCTTATTAGTGCAATTGTACTAAAAATTTGTGTAATTTATGTGCCTTTTAACCACCAAGTTTTGTTTATGCTGCGTTGTTCTTAAATTTTAAAATTTTCACGACAACAATAAGGATAGTACATTCTAATTTGAATATATGGTTGAAGAGTGTAAGTGGATAAAATGATGCAGACCGGATTTGTAGAGAGTAATAGAAGTTTTTGCATATACGAATCTGAGATTCAGACATAATTGATAATAGTTATCATAAACTCTGTCTAGGATTGCTGATCTCAGACGCCGAAAAAATTTGTACGTTAGTTTTGTGCGGTGGTTATTGTATTCATGTCTGAAATAGAAACCATGGCTGAACTTTATCTGTCAGATATACTTTCTTATGTCCGGCATAAATTTATGTTAACATTTTCTATTATGGTTTCCTATCTAATATCATAAGGTGTGTCCTTATTTAGCAGTTAAAGGCGAGGTTACCTTCATGTTTTGCAAAAGAAGTAGGCGTGCATATTGATGATCATGTTATGCTTCGTGATCCAAACAACAATATCATTGTTGTTGAAGTTCAGAAAAAGAATGGCAAGGTCTACTTCAGACAAGGCTGGTCTAGGGTGAAGGATATTTATAACATTGTAGATGGTGCATGGGTCTATCTGAAATATGCGGGGCCTAATCTACTACTCATGACCATAAGAAACAAGGCTGGATTGGAGATACCATATCCATTATCCGATATATCCCTTGCGTTGCCGAGGTTCATTACTTCATCAGGGGAGAGCCAGTTAGTGCATTTTTTCCGCACATCTGTCAAGATTTTGACTTCGTCTGATGTCCTCTCGGGCACTTTGGTATATAATTTGCACTAATTGGTTAATATAATTAGATATTTGGTTATTTCGTTCATTCGATTATAAGGTTATCTTACTGTTTGTTGGTTGTTTAACCAGACTTTGCCGTGGTATGGCTTCTGCCAGAAATCCTTGCCACAGAAACCTACCACACTTACGATTGTTGGTCCGAACGGCTGTACATGGAGATGTGATCTGACCTTCGCTGTTGCAAATAATATGCCTTATGCTATGATTGGTGGTGATTGGAACCTGATTTGCACATCGCAGAGGTTGGTTGCAGGCCATGCAGTTAAGTTCGCTGTTGTCCATGACAAAGATAACACAGTCCTTGGTTTCCGACATACCCCAATACACTGCACCCATGGATACTATGTGAAACCTATGGTCAGCGGCAGTGGTCGATATGTGTACCAGGTCAATCACTATCTCAAATATTGCAAGGCGAAGAGTATGCTGGAACAGATGTCGGGATGA
Protein sequence

>MS.gene041720.t1

MPPNIVICSLLECGRWFYPKLICSMHENVVGGGNDFHPTYTPSEMAMMRTYFLEFDTMSGMGRMPNCFLKDYGGYIEDYVMLRDPMNNEIEVRLYRRGDKLYMRKGWYGLKDFYNIELGAWIDLTYERPNLMTLTINNRFFEEILYPAHTTPIISKLDRRDFGGNLDDFFETFTIELTYSDVNSGCLTLPWFGFCKRVLPPINTDLTVIDYVGFAWRCDLKFIQRDKTPMCTIEGDWGTICKARRFVEGRSIDLAVTEEKNNYVLYLKFIPVPSTNADLIRGIDPRFILQSDASIFCFQDSANDLDPVRRDLSRLRTYRLELDSDILKARLPSCFAKEVGVHIDDHVMLRDPNNNIIVVEVQKKNGKVYFRQGWSRVKDIYNIVDGAWVYLKYAGPNLLLMTIRNKAGLEIPYPLSDISLALPRFITSSGESQLVHFFRTSVKILTSSDVLSGTLTLPWYGFCQKSLPQKPTTLTIVGPNGCTWRCDLTFAVANNMPYAMIGGDWNLICTSQRLVAGHAVKFAVVHDKDNTVLGFRHTPIHCTHGYYVKPMVSGSGRYVYQVNHYLKYCKAKSMLEQMSG