Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene04181.t1 | XP_027354476.1 | 48.9 | 188 | 59 | 5 | 28 | 214 | 188 | 339 | 5.80E-34 | 154.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene04181.t1 | Q8H1G0 | 65.1 | 43 | 15 | 0 | 32 | 74 | 223 | 265 | 2.0e-11 | 70.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene04181.t1 | A0A1S2Y9V5 | 54.7 | 148 | 45 | 1 | 25 | 150 | 188 | 335 | 2.3e-32 | 148.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene04181.t1 | TF | C2C2-GATA |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene04181.t1 | MTR_3g100040 | 55.147 | 136 | 39 | 1 | 25 | 138 | 91 | 226 | 8.34e-38 | 132 |
| MS.gene04181.t1 | MTR_3g100040 | 55.556 | 135 | 38 | 1 | 26 | 138 | 196 | 330 | 6.35e-37 | 132 |
| MS.gene04181.t1 | MTR_3g060200 | 45.139 | 144 | 38 | 3 | 11 | 113 | 10 | 153 | 2.19e-27 | 106 |
| MS.gene04181.t1 | MTR_3g060200 | 38.220 | 191 | 79 | 5 | 11 | 165 | 10 | 197 | 5.20e-25 | 101 |
| MS.gene04181.t1 | MTR_3g060200 | 37.368 | 190 | 80 | 5 | 11 | 164 | 10 | 196 | 2.07e-24 | 99.8 |
| MS.gene04181.t1 | MTR_3g060200 | 37.368 | 190 | 80 | 5 | 11 | 164 | 10 | 196 | 5.38e-24 | 99.4 |
| MS.gene04181.t1 | MTR_4g093730 | 41.228 | 114 | 51 | 4 | 30 | 128 | 175 | 287 | 1.78e-17 | 79.7 |
| MS.gene04181.t1 | MTR_5g066510 | 43.373 | 83 | 40 | 2 | 32 | 111 | 203 | 281 | 4.28e-14 | 69.7 |
| MS.gene04181.t1 | MTR_3g100050 | 54.237 | 59 | 25 | 1 | 32 | 90 | 200 | 256 | 7.88e-14 | 69.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene04181.t1 | AT1G51600 | 65.116 | 43 | 15 | 0 | 32 | 74 | 223 | 265 | 8.64e-14 | 69.3 |
| MS.gene04181.t1 | AT1G51600 | 65.116 | 43 | 15 | 0 | 32 | 74 | 223 | 265 | 8.64e-14 | 69.3 |
| MS.gene04181.t1 | AT3G21175 | 65.116 | 43 | 15 | 0 | 32 | 74 | 217 | 259 | 5.90e-13 | 66.6 |
| MS.gene04181.t1 | AT3G21175 | 65.116 | 43 | 15 | 0 | 32 | 74 | 219 | 261 | 6.10e-13 | 66.6 |
| MS.gene04181.t1 | AT4G24470 | 43.056 | 72 | 36 | 1 | 32 | 103 | 214 | 280 | 1.61e-12 | 65.9 |
| MS.gene04181.t1 | AT4G24470 | 43.056 | 72 | 36 | 1 | 32 | 103 | 214 | 280 | 1.61e-12 | 65.9 |
| MS.gene04181.t1 | AT4G24470 | 59.091 | 44 | 18 | 0 | 32 | 75 | 214 | 257 | 2.89e-12 | 65.1 |
Find 57 sgRNAs with CRISPR-Local
Find 331 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGCGTTTAAATTGCCTATC+AGG | 0.261467 | 3.3:-48497485 | None:intergenic |
| TTAGGAATTGTTCATTCTTC+AGG | 0.271089 | 3.3:+48499671 | MS.gene04181:CDS |
| TGGCATCACGTGGGCCAAAA+AGG | 0.324740 | 3.3:+48497713 | MS.gene04181:CDS |
| GTTGGGTGTTCTGAAGATTC+AGG | 0.326610 | 3.3:-48499635 | None:intergenic |
| ACCTTCAGTAGTTGTGGCCT+TGG | 0.357222 | 3.3:-48501557 | None:intergenic |
| TTTAAAACTACCTCTTCAAT+GGG | 0.357626 | 3.3:-48499485 | None:intergenic |
| TGCATGATTGTTCGAACCTT+CGG | 0.360199 | 3.3:-48499456 | None:intergenic |
| GGCCACAACTACTGAAGGTT+TGG | 0.369674 | 3.3:+48501561 | MS.gene04181:CDS |
| ATTTAAAACTACCTCTTCAA+TGG | 0.371536 | 3.3:-48499486 | None:intergenic |
| TGTTGGGTGTTCTGAAGATT+CGG | 0.392880 | 3.3:-48501747 | None:intergenic |
| GTTGGGTGTTCTGAAGATTC+GGG | 0.399093 | 3.3:-48501746 | None:intergenic |
| CTAATGGTAGATTGTTTGTT+GGG | 0.411712 | 3.3:-48499652 | None:intergenic |
| CCAACAAACAATCTACCATT+AGG | 0.419718 | 3.3:+48499653 | MS.gene04181:CDS |
| AAAATGCGTCCCGGGCCAGC+TGG | 0.423256 | 3.3:+48497666 | MS.gene04181:CDS |
| AGTAAATCTTCCAGCTGGCC+CGG | 0.440593 | 3.3:-48497676 | None:intergenic |
| TTCTGTTGATCAAAGTGGTC+TGG | 0.446513 | 3.3:+48498234 | MS.gene04181:CDS |
| TGTGGCCTTGGAAGGATCTT+CGG | 0.456624 | 3.3:-48501545 | None:intergenic |
| GAAGAATGAACAATTCCTAA+TGG | 0.472907 | 3.3:-48499668 | None:intergenic |
| CCTAACGGTAGTGTGTTTGT+TGG | 0.473043 | 3.3:-48501764 | None:intergenic |
| CATTCTTCAGGAAATAATGA+TGG | 0.478258 | 3.3:+48499683 | MS.gene04181:CDS |
| AAACGCTTCAAGAAAAGTCC+TGG | 0.483720 | 3.3:+48497500 | MS.gene04181:CDS |
| AGGATGCTGCGTCACAAGGA+TGG | 0.484263 | 3.3:+48497440 | None:intergenic |
| TGCATTGAACCCTATTGAAA+AGG | 0.485054 | 3.3:+48501591 | MS.gene04181:CDS |
| ATGACTCCCTCGAAGGTCAA+TGG | 0.487436 | 3.3:-48502309 | None:intergenic |
| CCTAATGGTAGATTGTTTGT+TGG | 0.488068 | 3.3:-48499653 | None:intergenic |
| ACCTTCGGCAACAATGAACT+TGG | 0.488369 | 3.3:-48499441 | None:intergenic |
| TGTAGAGCTTGACACAATAG+TGG | 0.493299 | 3.3:-48502283 | None:intergenic |
| GCTTCAAGCGAAGTCCTGAT+AGG | 0.493569 | 3.3:+48497471 | MS.gene04181:CDS |
| CTAACGGTAGTGTGTTTGTT+GGG | 0.496188 | 3.3:-48501763 | None:intergenic |
| TTCAGGAAATAATGATGGAC+AGG | 0.503725 | 3.3:+48499688 | MS.gene04181:CDS |
| TCCAAGTTCATTGTTGCCGA+AGG | 0.503865 | 3.3:+48499440 | MS.gene04181:CDS |
| TCAGTAGTTGTGGCCTTGGA+AGG | 0.504019 | 3.3:-48501553 | None:intergenic |
| TACAAATCCATTGACCTTCG+AGG | 0.510668 | 3.3:+48502302 | MS.gene04181:CDS |
| TTCAGAAAATGATGATGTCC+AGG | 0.515249 | 3.3:+48501799 | MS.gene04181:CDS |
| TCATTTCCTATAGACGGTGT+TGG | 0.529733 | 3.3:+48502244 | MS.gene04181:intron |
| TGCTAGGATGCTGCGTCACA+AGG | 0.532793 | 3.3:+48497436 | None:intergenic |
| GGATGCTGCGTCACAAGGAT+GGG | 0.534910 | 3.3:+48497441 | None:intergenic |
| GTAAATCTTCCAGCTGGCCC+GGG | 0.542997 | 3.3:-48497675 | None:intergenic |
| ATCCAAACCTTCAGTAGTTG+TGG | 0.552469 | 3.3:-48501563 | None:intergenic |
| TCCAAGGCCACAACTACTGA+AGG | 0.558504 | 3.3:+48501556 | MS.gene04181:CDS |
| CCAACAAACACACTACCGTT+AGG | 0.565471 | 3.3:+48501764 | MS.gene04181:CDS |
| TCGGCAACAATGAACTTGGA+AGG | 0.566559 | 3.3:-48499437 | None:intergenic |
| ACTCATTCTGTTGATCAAAG+TGG | 0.569763 | 3.3:+48498229 | MS.gene04181:CDS |
| TTTACTCTATGTAATATATG+TGG | 0.572890 | 3.3:+48497693 | MS.gene04181:CDS |
| CGGCAACAATGAACTTGGAA+GGG | 0.574551 | 3.3:-48499436 | None:intergenic |
| TGCATTAAACCCCATTGAAG+AGG | 0.577550 | 3.3:+48499475 | MS.gene04181:CDS |
| CATAGAGTAAATCTTCCAGC+TGG | 0.585448 | 3.3:-48497681 | None:intergenic |
| ACAAATCCATTGACCTTCGA+GGG | 0.597121 | 3.3:+48502303 | MS.gene04181:CDS |
| TATTTCCGAAGATCCTTCCA+AGG | 0.605617 | 3.3:+48501540 | MS.gene04181:CDS |
| GTAATATATGTGGCATCACG+TGG | 0.611896 | 3.3:+48497703 | MS.gene04181:CDS |
| TGCTGCGTCACAAGGATGGG+CGG | 0.620721 | 3.3:+48497444 | MS.gene04181:CDS |
| GAAGAATGATCAATTCCTAA+CGG | 0.628796 | 3.3:-48501779 | None:intergenic |
| AAATTCGATGACTCCCTCGA+AGG | 0.631673 | 3.3:-48502316 | None:intergenic |
| AGACGTAGATGTCAACATTG+TGG | 0.632757 | 3.3:+48497621 | MS.gene04181:intron |
| TTTAAAACTCACAAAGAACC+AGG | 0.655376 | 3.3:-48497518 | None:intergenic |
| TAATATATGTGGCATCACGT+GGG | 0.695349 | 3.3:+48497704 | MS.gene04181:CDS |
| TTAAAACTACCTCTTCAATG+GGG | 0.700888 | 3.3:-48499484 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTGTCTTTATTTTATAT+TGG | + | chr3.3:48499367-48499386 | MS.gene04181:intron | 10.0% |
| !! | AATAAAATGTTTCTTGTTAA+AGG | - | chr3.3:48500943-48500962 | None:intergenic | 15.0% |
| !! | ATAAAATGTTTCTTGTTAAA+GGG | - | chr3.3:48500942-48500961 | None:intergenic | 15.0% |
| !! | TTTACTTTGTTAATAAAACT+GGG | - | chr3.3:48498604-48498623 | None:intergenic | 15.0% |
| !!! | AATTTGTTAAACACTTTAAT+TGG | - | chr3.3:48500522-48500541 | None:intergenic | 15.0% |
| !!! | ACCTAAAATAATCAATTTTA+GGG | + | chr3.3:48502095-48502114 | MS.gene04181:intron | 15.0% |
| !!! | ATTAAAAATAACCACTTTTT+TGG | - | chr3.3:48501989-48502008 | None:intergenic | 15.0% |
| !!! | TATTTTTTAAATGAATTGAG+AGG | + | chr3.3:48500016-48500035 | MS.gene04181:intron | 15.0% |
| !!! | TTAAAAATAACCACTTTTTT+GGG | - | chr3.3:48501988-48502007 | None:intergenic | 15.0% |
| !!! | TTAAAAATACCTTTTCAATA+GGG | - | chr3.3:48501603-48501622 | None:intergenic | 15.0% |
| !!! | TTCTATTCATAATGAATTTT+AGG | - | chr3.3:48502033-48502052 | None:intergenic | 15.0% |
| !!! | TTTAAAAATACCTTTTCAAT+AGG | - | chr3.3:48501604-48501623 | None:intergenic | 15.0% |
| !!! | TTTCTGTCTTTATTTTATAT+TGG | + | chr3.3:48499319-48499338 | MS.gene04181:intron | 15.0% |
| !! | AAAAAATTGTTCAGAGATTA+AGG | - | chr3.3:48498944-48498963 | None:intergenic | 20.0% |
| !! | AACTCTACAAGTAATTAAAA+TGG | - | chr3.3:48499258-48499277 | None:intergenic | 20.0% |
| !! | AATCAAAATACCATGAAATA+AGG | + | chr3.3:48498631-48498650 | MS.gene04181:intron | 20.0% |
| !! | CATTATTATGCTTATAAACT+TGG | - | chr3.3:48501402-48501421 | None:intergenic | 20.0% |
| !! | CTATACAAGTTCAAATATTT+GGG | - | chr3.3:48500986-48501005 | None:intergenic | 20.0% |
| !! | CTTTACTTTGTTAATAAAAC+TGG | - | chr3.3:48498605-48498624 | None:intergenic | 20.0% |
| !! | TAAAAAAAAATCTAGTGTTG+AGG | + | chr3.3:48500647-48500666 | MS.gene04181:intron | 20.0% |
| !! | TAAAATGTTTCTTGTTAAAG+GGG | - | chr3.3:48500941-48500960 | None:intergenic | 20.0% |
| !! | TACAAAACAAGTTATTCAAT+AGG | - | chr3.3:48499718-48499737 | None:intergenic | 20.0% |
| !! | TACAAGTAATTAAAATGGAA+AGG | - | chr3.3:48499253-48499272 | None:intergenic | 20.0% |
| !! | TAGAAGTAATTAAAATGGAA+AGG | - | chr3.3:48501366-48501385 | None:intergenic | 20.0% |
| !! | TCTATACAAGTTCAAATATT+TGG | - | chr3.3:48500987-48501006 | None:intergenic | 20.0% |
| !! | TTTACTCTATGTAATATATG+TGG | + | chr3.3:48497693-48497712 | MS.gene04181:CDS | 20.0% |
| !!! | AAAAAAAAATCTAGTGTTGA+GGG | + | chr3.3:48500648-48500667 | MS.gene04181:intron | 20.0% |
| !!! | AACTCTAGAAGTAATTAAAA+TGG | - | chr3.3:48501371-48501390 | None:intergenic | 20.0% |
| !!! | CAAAGTTCTCTAATTTATTT+TGG | - | chr3.3:48501087-48501106 | None:intergenic | 20.0% |
| !!! | GACCTAAAATAATCAATTTT+AGG | + | chr3.3:48502094-48502113 | MS.gene04181:intron | 20.0% |
| !!! | GGTTATTTTTAATCCAAATA+TGG | + | chr3.3:48501996-48502015 | MS.gene04181:intron | 20.0% |
| !!! | TGTTTAACAAATTTGTTTGT+GGG | + | chr3.3:48500529-48500548 | MS.gene04181:intron | 20.0% |
| !!! | TTTATTCTTTTACATTCAGT+TGG | + | chr3.3:48501634-48501653 | MS.gene04181:intron | 20.0% |
| ! | AAAAAAATTATGGCATGTTC+AGG | + | chr3.3:48499400-48499419 | MS.gene04181:intron | 25.0% |
| ! | AAAAAATGATGTTGAATGCA+AGG | - | chr3.3:48501283-48501302 | None:intergenic | 25.0% |
| ! | AAAAAATTATGGCATGTTCA+GGG | + | chr3.3:48499401-48499420 | MS.gene04181:intron | 25.0% |
| ! | AAATAATGTTGAAGGCAAAA+TGG | - | chr3.3:48499168-48499187 | None:intergenic | 25.0% |
| ! | ACACGTCATAATTCTTTAAT+TGG | - | chr3.3:48498673-48498692 | None:intergenic | 25.0% |
| ! | ACATAATCTGTTCAATCATT+CGG | + | chr3.3:48499224-48499243 | MS.gene04181:intron | 25.0% |
| ! | AGTTATTCAATAAGAATACC+TGG | - | chr3.3:48501820-48501839 | None:intergenic | 25.0% |
| ! | ATACAATCATTTCCTATAGA+CGG | + | chr3.3:48502238-48502257 | MS.gene04181:intron | 25.0% |
| ! | ATTCAATTGGACAATTTATG+TGG | - | chr3.3:48500295-48500314 | None:intergenic | 25.0% |
| ! | CATTATAATGCTTATGAACT+TGG | - | chr3.3:48499289-48499308 | None:intergenic | 25.0% |
| ! | CCATGTGCAAAAAAAAATTA+TGG | + | chr3.3:48499390-48499409 | MS.gene04181:intron | 25.0% |
| ! | CTGTTCTAACTTTAATCTAA+TGG | - | chr3.3:48500098-48500117 | None:intergenic | 25.0% |
| ! | GATTCTATTCCATAATCTTA+TGG | + | chr3.3:48500872-48500891 | MS.gene04181:intron | 25.0% |
| ! | GCATCAAAAAATAATGTTGA+AGG | - | chr3.3:48499176-48499195 | None:intergenic | 25.0% |
| ! | GCTAGAATAAAAAAGAAGTT+TGG | + | chr3.3:48497869-48497888 | MS.gene04181:intron | 25.0% |
| ! | GGAATACATCTAAACAAATA+CGG | - | chr3.3:48500842-48500861 | None:intergenic | 25.0% |
| ! | GGACAATAAATTACCATATT+TGG | - | chr3.3:48502012-48502031 | None:intergenic | 25.0% |
| ! | TAAGGGAAAATAATACAAGT+TGG | + | chr3.3:48498502-48498521 | MS.gene04181:intron | 25.0% |
| ! | TACAGAAATATCTCATGTTT+AGG | - | chr3.3:48499811-48499830 | None:intergenic | 25.0% |
| ! | TCTTTGACTAAAAAGAAAAG+TGG | - | chr3.3:48502060-48502079 | None:intergenic | 25.0% |
| ! | TGAAATATAATGAACGACAA+TGG | - | chr3.3:48498031-48498050 | None:intergenic | 25.0% |
| ! | TTTCGTCAATACTTAAGAAA+AGG | - | chr3.3:48499557-48499576 | None:intergenic | 25.0% |
| !! | AACAAAATGACTAACCTTTT+TGG | - | chr3.3:48497730-48497749 | None:intergenic | 25.0% |
| !! | AGAGTTTTACTTGTTCATTT+TGG | - | chr3.3:48499096-48499115 | None:intergenic | 25.0% |
| !! | ATTATTTCTCCAATCTAAAC+AGG | + | chr3.3:48499947-48499966 | MS.gene04181:intron | 25.0% |
| !! | ATTTAAAACTACCTCTTCAA+TGG | - | chr3.3:48499489-48499508 | None:intergenic | 25.0% |
| !! | CCATGAAAATTTTATGCAAA+TGG | - | chr3.3:48501511-48501530 | None:intergenic | 25.0% |
| !! | CCATTTGCATAAAATTTTCA+TGG | + | chr3.3:48501508-48501527 | MS.gene04181:intron | 25.0% |
| !! | GCCCTAAAATTGATTATTTT+AGG | - | chr3.3:48502099-48502118 | None:intergenic | 25.0% |
| !! | GTGTTTAACAAATTTGTTTG+TGG | + | chr3.3:48500528-48500547 | MS.gene04181:intron | 25.0% |
| !! | TAATTATCTGCTTGTACTTT+TGG | + | chr3.3:48498788-48498807 | MS.gene04181:intron | 25.0% |
| !! | TTATTCTTTTACAGCCAATT+GGG | + | chr3.3:48499519-48499538 | MS.gene04181:intron | 25.0% |
| !! | TTTAAAACTACCTCTTCAAT+GGG | - | chr3.3:48499488-48499507 | None:intergenic | 25.0% |
| !! | TTTATTCTTTTACAGCCAAT+TGG | + | chr3.3:48499518-48499537 | MS.gene04181:intron | 25.0% |
| !! | TTTTTAAATGAATTGAGAGG+TGG | + | chr3.3:48500019-48500038 | MS.gene04181:intron | 25.0% |
| !!! | AACGGATTGTTAAAATTGTT+TGG | - | chr3.3:48498345-48498364 | None:intergenic | 25.0% |
| !!! | AGTCATTTTGTTAACAAGTA+TGG | + | chr3.3:48497738-48497757 | MS.gene04181:intron | 25.0% |
| !!! | CCATAATTTTTTTTTGCACA+TGG | - | chr3.3:48499393-48499412 | None:intergenic | 25.0% |
| AATTCGATGGCATTTAGTAT+GGG | - | chr3.3:48500752-48500771 | None:intergenic | 30.0% | |
| ATCACGAATGTGAAGTAAAA+AGG | - | chr3.3:48498080-48498099 | None:intergenic | 30.0% | |
| ATCCACTGAATATTATTTGC+AGG | + | chr3.3:48499058-48499077 | MS.gene04181:intron | 30.0% | |
| ATCCTGCAAATAATATTCAG+TGG | - | chr3.3:48499063-48499082 | None:intergenic | 30.0% | |
| CATAATCTTATGGATCAAGT+AGG | + | chr3.3:48500882-48500901 | MS.gene04181:intron | 30.0% | |
| CATTCTTCAGGAAATAATGA+TGG | + | chr3.3:48499683-48499702 | MS.gene04181:CDS | 30.0% | |
| CTAATGGTAGATTGTTTGTT+GGG | - | chr3.3:48499655-48499674 | None:intergenic | 30.0% | |
| CTACTTGATCCATAAGATTA+TGG | - | chr3.3:48500884-48500903 | None:intergenic | 30.0% | |
| CTTCTATGAGTTATGATACT+TGG | + | chr3.3:48501699-48501718 | MS.gene04181:intron | 30.0% | |
| GAAGAATGAACAATTCCTAA+TGG | - | chr3.3:48499671-48499690 | None:intergenic | 30.0% | |
| GAAGAATGATCAATTCCTAA+CGG | - | chr3.3:48501782-48501801 | None:intergenic | 30.0% | |
| GCAAATAATATTCAGTGGAT+AGG | - | chr3.3:48499058-48499077 | None:intergenic | 30.0% | |
| GGAATAGAATCAATACAGAA+GGG | - | chr3.3:48500863-48500882 | None:intergenic | 30.0% | |
| GTTCCAACAGTATATTCAAT+TGG | - | chr3.3:48500308-48500327 | None:intergenic | 30.0% | |
| TAAGCATGAATCAGCAATAT+GGG | - | chr3.3:48501472-48501491 | None:intergenic | 30.0% | |
| TAATTCGATGGCATTTAGTA+TGG | - | chr3.3:48500753-48500772 | None:intergenic | 30.0% | |
| TACAAGTTCAAATATTTGGG+AGG | - | chr3.3:48500983-48501002 | None:intergenic | 30.0% | |
| TACATAATCTATTCCATCCT+CGG | + | chr3.3:48501336-48501355 | MS.gene04181:intron | 30.0% | |
| TGGAATAGAATCAATACAGA+AGG | - | chr3.3:48500864-48500883 | None:intergenic | 30.0% | |
| TGTCCAATTGAATATACTGT+TGG | + | chr3.3:48500302-48500321 | MS.gene04181:intron | 30.0% | |
| TTAAAACTACCTCTTCAATG+GGG | - | chr3.3:48499487-48499506 | None:intergenic | 30.0% | |
| TTAGCACATCAATAACTTGA+CGG | - | chr3.3:48498556-48498575 | None:intergenic | 30.0% | |
| TTAGGAATTGTTCATTCTTC+AGG | + | chr3.3:48499671-48499690 | MS.gene04181:CDS | 30.0% | |
| TTGGTAAATGTGTATTTGTC+AGG | + | chr3.3:48501718-48501737 | MS.gene04181:intron | 30.0% | |
| ! | AAAATAATACAAGTTGGAGG+AGG | + | chr3.3:48498508-48498527 | MS.gene04181:intron | 30.0% |
| ! | ACAATCCGTTTGAAATCAAA+TGG | + | chr3.3:48498355-48498374 | MS.gene04181:intron | 30.0% |
| ! | AGGCAATTTTGTCAAGAAAT+TGG | + | chr3.3:48500389-48500408 | MS.gene04181:intron | 30.0% |
| ! | AGTTTATGATACTTGCTACA+TGG | + | chr3.3:48499594-48499613 | MS.gene04181:intron | 30.0% |
| ! | CAACACCATTTGATTTCAAA+CGG | - | chr3.3:48498363-48498382 | None:intergenic | 30.0% |
| ! | GCTATTGTTTCTTAATTCGA+TGG | - | chr3.3:48500765-48500784 | None:intergenic | 30.0% |
| ! | GTTTATGATACTTGCTACAT+GGG | + | chr3.3:48499595-48499614 | MS.gene04181:intron | 30.0% |
| ! | TCACAAAACACCTTATTTCA+TGG | - | chr3.3:48498644-48498663 | None:intergenic | 30.0% |
| ! | TGTATGTTTTGTGTTTGTCT+TGG | + | chr3.3:48501105-48501124 | MS.gene04181:intron | 30.0% |
| ! | TTTAAAACTCACAAAGAACC+AGG | - | chr3.3:48497521-48497540 | None:intergenic | 30.0% |
| !!! | ACTTTTTTGGGCCAAAAATA+TGG | - | chr3.3:48501976-48501995 | None:intergenic | 30.0% |
| !!! | ATATTTTTGGCCCAAAAAAG+TGG | + | chr3.3:48501975-48501994 | MS.gene04181:intron | 30.0% |
| !!! | CGTTTTTTTTAAACTCTGCA+GGG | + | chr3.3:48498175-48498194 | MS.gene04181:intron | 30.0% |
| !!! | CTTTTTTGGGCCAAAAATAT+GGG | - | chr3.3:48501975-48501994 | None:intergenic | 30.0% |
| !!! | GTTTTTTTTAAACTCTGCAG+GGG | + | chr3.3:48498176-48498195 | MS.gene04181:intron | 30.0% |
| !!! | TTTGTGAGTTTTAAACGTAG+TGG | + | chr3.3:48497526-48497545 | MS.gene04181:intron | 30.0% |
| AAAAGACCTGATTGCACTTT+AGG | - | chr3.3:48502210-48502229 | None:intergenic | 35.0% | |
| AACGTGTATGTCTATCTTGA+GGG | + | chr3.3:48500804-48500823 | MS.gene04181:intron | 35.0% | |
| AAGCGTTTAAATTGCCTATC+AGG | - | chr3.3:48497488-48497507 | None:intergenic | 35.0% | |
| ACATAATCTATTCCATCCTC+GGG | + | chr3.3:48501337-48501356 | MS.gene04181:intron | 35.0% | |
| ACGAAGCATAATCTCTTATC+AGG | + | chr3.3:48498446-48498465 | MS.gene04181:intron | 35.0% | |
| ACTCATTCTGTTGATCAAAG+TGG | + | chr3.3:48498229-48498248 | MS.gene04181:CDS | 35.0% | |
| ATTCGTCAATACCCAAGAAA+AGG | - | chr3.3:48501673-48501692 | None:intergenic | 35.0% | |
| ATTTCATGTCGTGTTCTTTG+TGG | + | chr3.3:48498855-48498874 | MS.gene04181:intron | 35.0% | |
| CATAACTGACAAAACTGTAC+TGG | + | chr3.3:48501873-48501892 | MS.gene04181:intron | 35.0% | |
| CCAACAAACAATCTACCATT+AGG | + | chr3.3:48499653-48499672 | MS.gene04181:CDS | 35.0% | |
| CCTAATGGTAGATTGTTTGT+TGG | - | chr3.3:48499656-48499675 | None:intergenic | 35.0% | |
| CGAAGCATAATCTCTTATCA+GGG | + | chr3.3:48498447-48498466 | MS.gene04181:intron | 35.0% | |
| CGTACATCAGAAGAAAGATT+GGG | + | chr3.3:48501199-48501218 | MS.gene04181:intron | 35.0% | |
| CGTCAATACTTAAGAAAAGG+TGG | - | chr3.3:48499554-48499573 | None:intergenic | 35.0% | |
| CTAAGCATGAATCAGCAATA+TGG | - | chr3.3:48501473-48501492 | None:intergenic | 35.0% | |
| CTTCAGTCTTCTATGCTTAT+TGG | + | chr3.3:48501255-48501274 | MS.gene04181:intron | 35.0% | |
| GCAACAAATGTGCTAATTGA+GGG | + | chr3.3:48502145-48502164 | MS.gene04181:intron | 35.0% | |
| GCGTTCTCTATTTGATGTAA+TGG | + | chr3.3:48500685-48500704 | MS.gene04181:intron | 35.0% | |
| TAAAACACGCCTGTTTAGAT+TGG | - | chr3.3:48499959-48499978 | None:intergenic | 35.0% | |
| TAACGTGTATGTCTATCTTG+AGG | + | chr3.3:48500803-48500822 | MS.gene04181:intron | 35.0% | |
| TAATATATGTGGCATCACGT+GGG | + | chr3.3:48497704-48497723 | MS.gene04181:CDS | 35.0% | |
| TACAAGACATATGTGGTTAG+TGG | - | chr3.3:48497815-48497834 | None:intergenic | 35.0% | |
| TATGGTTTCGATGAAATGCT+TGG | + | chr3.3:48497756-48497775 | MS.gene04181:intron | 35.0% | |
| TCGTACATCAGAAGAAAGAT+TGG | + | chr3.3:48501198-48501217 | MS.gene04181:intron | 35.0% | |
| TGACTTTGTCAAGAAATTCC+TGG | + | chr3.3:48500424-48500443 | MS.gene04181:intron | 35.0% | |
| TGCAACAAATGTGCTAATTG+AGG | + | chr3.3:48502144-48502163 | MS.gene04181:intron | 35.0% | |
| TGCATTGAACCCTATTGAAA+AGG | + | chr3.3:48501591-48501610 | MS.gene04181:CDS | 35.0% | |
| TTAGCATTATGAGAAAGAGC+TGG | - | chr3.3:48499345-48499364 | None:intergenic | 35.0% | |
| TTAGTCGAGAATGCAGATAA+GGG | + | chr3.3:48498485-48498504 | MS.gene04181:intron | 35.0% | |
| TTGAAAATCCATCAACACGA+GGG | - | chr3.3:48500213-48500232 | None:intergenic | 35.0% | |
| TTGTCAGCGTGATAAAAAAG+AGG | + | chr3.3:48502183-48502202 | MS.gene04181:intron | 35.0% | |
| TTTAGTCGAGAATGCAGATA+AGG | + | chr3.3:48498484-48498503 | MS.gene04181:intron | 35.0% | |
| ! | AAGTTGTTTCATTAAGCCAC+TGG | + | chr3.3:48501006-48501025 | MS.gene04181:intron | 35.0% |
| ! | ATATTTTTCCCCATCTGAAG+AGG | + | chr3.3:48499847-48499866 | MS.gene04181:intron | 35.0% |
| ! | CGTTTGAAATCAAATGGTGT+TGG | + | chr3.3:48498361-48498380 | MS.gene04181:intron | 35.0% |
| ! | GCAAAAGTACAAGACATATG+TGG | - | chr3.3:48497822-48497841 | None:intergenic | 35.0% |
| ! | GGGAAAATAATACAAGTTGG+AGG | + | chr3.3:48498505-48498524 | MS.gene04181:intron | 35.0% |
| ! | GTACTTTTGGATGTCACAAT+GGG | + | chr3.3:48498801-48498820 | MS.gene04181:intron | 35.0% |
| ! | TATGTCTTGTACTTTTGCTC+AGG | + | chr3.3:48497824-48497843 | MS.gene04181:intron | 35.0% |
| ! | TGATAACTGTGTATGGACTA+GGG | + | chr3.3:48501222-48501241 | MS.gene04181:intron | 35.0% |
| ! | TGTACTTTTGGATGTCACAA+TGG | + | chr3.3:48498800-48498819 | MS.gene04181:intron | 35.0% |
| ! | TTCAGAAAATGATGATGTCC+AGG | + | chr3.3:48501799-48501818 | MS.gene04181:CDS | 35.0% |
| ! | TTCAGTGGATAGGATGTTTT+AGG | - | chr3.3:48499048-48499067 | None:intergenic | 35.0% |
| !! | AAATCAAATGGTGTTGGTGA+TGG | + | chr3.3:48498367-48498386 | MS.gene04181:intron | 35.0% |
| !! | AAGTAGCCTGACTTACTTTT+TGG | + | chr3.3:48501912-48501931 | MS.gene04181:intron | 35.0% |
| !! | TTCAGGAAATAATGATGGAC+AGG | + | chr3.3:48499688-48499707 | MS.gene04181:CDS | 35.0% |
| !!! | ATTATTTTAGGTCCCAGAAG+TGG | - | chr3.3:48502087-48502106 | None:intergenic | 35.0% |
| !!! | CAATTTTAGGGCCAAAAATC+TGG | + | chr3.3:48502107-48502126 | MS.gene04181:intron | 35.0% |
| !!! | GCGTTTTTTTTAAACTCTGC+AGG | + | chr3.3:48498174-48498193 | MS.gene04181:intron | 35.0% |
| AAAATCACTTGAGCATGGTG+GGG | - | chr3.3:48500072-48500091 | None:intergenic | 40.0% | |
| AAACAACCTAACCCCCATTA+AGG | + | chr3.3:48498978-48498997 | MS.gene04181:intron | 40.0% | |
| AAACGCTTCAAGAAAAGTCC+TGG | + | chr3.3:48497500-48497519 | MS.gene04181:CDS | 40.0% | |
| AAAGACCAATTCGACTACGA+TGG | + | chr3.3:48500710-48500729 | MS.gene04181:intron | 40.0% | |
| AACAACCTAACCCCCATTAA+GGG | + | chr3.3:48498979-48498998 | MS.gene04181:intron | 40.0% | |
| AAGACCAATTCGACTACGAT+GGG | + | chr3.3:48500711-48500730 | MS.gene04181:intron | 40.0% | |
| ACAAATCCATTGACCTTCGA+GGG | + | chr3.3:48502303-48502322 | MS.gene04181:CDS | 40.0% | |
| ACGTGTATGTCTATCTTGAG+GGG | + | chr3.3:48500805-48500824 | MS.gene04181:intron | 40.0% | |
| AGAAAGCAAGGCCAAGATAA+CGG | + | chr3.3:48500242-48500261 | MS.gene04181:intron | 40.0% | |
| AGACGTAGATGTCAACATTG+TGG | + | chr3.3:48497621-48497640 | MS.gene04181:intron | 40.0% | |
| AGATATCCAACACCGTCTAT+AGG | - | chr3.3:48502253-48502272 | None:intergenic | 40.0% | |
| AGCAAACAAGTATGGTCAAC+AGG | - | chr3.3:48498104-48498123 | None:intergenic | 40.0% | |
| AGCATAAGGAGCTCATTACA+CGG | - | chr3.3:48501170-48501189 | None:intergenic | 40.0% | |
| ATCCAAACCTTCAGTAGTTG+TGG | - | chr3.3:48501566-48501585 | None:intergenic | 40.0% | |
| ATTGTAAGGGGAATCGAGAA+CGG | - | chr3.3:48500330-48500349 | None:intergenic | 40.0% | |
| CAAGTTTCCATCAGAAAGCA+AGG | + | chr3.3:48500230-48500249 | MS.gene04181:intron | 40.0% | |
| CACATCAATAACTTGACGGA+TGG | - | chr3.3:48498552-48498571 | None:intergenic | 40.0% | |
| CATAGAGTAAATCTTCCAGC+TGG | - | chr3.3:48497684-48497703 | None:intergenic | 40.0% | |
| CCAGTTGCAAAAAGCTTAGT+GGG | + | chr3.3:48498310-48498329 | MS.gene04181:intron | 40.0% | |
| CGACGTCAATTTCAACACAA+AGG | - | chr3.3:48500467-48500486 | None:intergenic | 40.0% | |
| CTAACGGTAGTGTGTTTGTT+GGG | - | chr3.3:48501766-48501785 | None:intergenic | 40.0% | |
| CTCCATTCCTATTTCCTACA+CGG | - | chr3.3:48501033-48501052 | None:intergenic | 40.0% | |
| CTCGATTCCCCTTACAATTT+GGG | + | chr3.3:48500332-48500351 | MS.gene04181:intron | 40.0% | |
| CTTGAAAATCCATCAACACG+AGG | - | chr3.3:48500214-48500233 | None:intergenic | 40.0% | |
| GAAAATCACTTGAGCATGGT+GGG | - | chr3.3:48500073-48500092 | None:intergenic | 40.0% | |
| GAAACACAGATCTTAAAGCC+AGG | - | chr3.3:48500445-48500464 | None:intergenic | 40.0% | |
| GAATCTACAGTTACAGTCCA+TGG | + | chr3.3:48500585-48500604 | MS.gene04181:intron | 40.0% | |
| GAGAATGCAGCAAACAAGTA+TGG | - | chr3.3:48498112-48498131 | None:intergenic | 40.0% | |
| GATTGGGTGATAACTGTGTA+TGG | + | chr3.3:48501215-48501234 | MS.gene04181:intron | 40.0% | |
| GCAACAGATACGATACTTGA+GGG | - | chr3.3:48501939-48501958 | None:intergenic | 40.0% | |
| GTAATATATGTGGCATCACG+TGG | + | chr3.3:48497703-48497722 | MS.gene04181:CDS | 40.0% | |
| GTATCGTATCTGTTGCAGTT+TGG | + | chr3.3:48501943-48501962 | MS.gene04181:intron | 40.0% | |
| GTGATAACTGTGTATGGACT+AGG | + | chr3.3:48501221-48501240 | MS.gene04181:intron | 40.0% | |
| GTGTTGAAATTGACGTCGAA+GGG | + | chr3.3:48500469-48500488 | MS.gene04181:intron | 40.0% | |
| TACAAATCCATTGACCTTCG+AGG | + | chr3.3:48502302-48502321 | MS.gene04181:CDS | 40.0% | |
| TACATTCAGTTGGCAGTGTT+CGG | + | chr3.3:48501644-48501663 | MS.gene04181:intron | 40.0% | |
| TAGGACTACTTGAACTCACA+TGG | - | chr3.3:48499792-48499811 | None:intergenic | 40.0% | |
| TATTTCCGAAGATCCTTCCA+AGG | + | chr3.3:48501540-48501559 | MS.gene04181:CDS | 40.0% | |
| TCATTTCCTATAGACGGTGT+TGG | + | chr3.3:48502244-48502263 | MS.gene04181:intron | 40.0% | |
| TCTCGATTCCCCTTACAATT+TGG | + | chr3.3:48500331-48500350 | MS.gene04181:intron | 40.0% | |
| TGCAACAGATACGATACTTG+AGG | - | chr3.3:48501940-48501959 | None:intergenic | 40.0% | |
| TGCATGATTGTTCGAACCTT+CGG | - | chr3.3:48499459-48499478 | None:intergenic | 40.0% | |
| TGCATTAAACCCCATTGAAG+AGG | + | chr3.3:48499475-48499494 | MS.gene04181:CDS | 40.0% | |
| TGTAGAGCTTGACACAATAG+TGG | - | chr3.3:48502286-48502305 | None:intergenic | 40.0% | |
| TGTGTTGAAATTGACGTCGA+AGG | + | chr3.3:48500468-48500487 | MS.gene04181:intron | 40.0% | |
| TGTTTCTTGTTAAAGGGGAG+AGG | - | chr3.3:48500936-48500955 | None:intergenic | 40.0% | |
| TTCTGTTGATCAAAGTGGTC+TGG | + | chr3.3:48498234-48498253 | MS.gene04181:CDS | 40.0% | |
| TTGCCTCTTTCTGACATAAC+CGG | - | chr3.3:48500375-48500394 | None:intergenic | 40.0% | |
| ! | AAACGTAGTGGCTCTTTTGT+GGG | + | chr3.3:48497538-48497557 | MS.gene04181:intron | 40.0% |
| ! | ATAATGGAGGAGGTGAAAGA+TGG | - | chr3.3:48500135-48500154 | None:intergenic | 40.0% |
| ! | CGCTGACAAATCGAACTTTT+CGG | - | chr3.3:48502172-48502191 | None:intergenic | 40.0% |
| ! | GAGGACTATTAGTCTCAGTA+TGG | + | chr3.3:48501050-48501069 | MS.gene04181:intron | 40.0% |
| ! | TAAACGTAGTGGCTCTTTTG+TGG | + | chr3.3:48497537-48497556 | MS.gene04181:intron | 40.0% |
| ! | TACAACTAGCCTCTTCAGAT+GGG | - | chr3.3:48499859-48499878 | None:intergenic | 40.0% |
| ! | TAGCACATTTGTTGCAATCG+TGG | - | chr3.3:48502140-48502159 | None:intergenic | 40.0% |
| ! | TCCGTTCTTTTCCGTTATCT+TGG | - | chr3.3:48500256-48500275 | None:intergenic | 40.0% |
| ! | TGCTACATGGGTATTTTCTC+AGG | + | chr3.3:48499607-48499626 | MS.gene04181:intron | 40.0% |
| ! | TTACAACTAGCCTCTTCAGA+TGG | - | chr3.3:48499860-48499879 | None:intergenic | 40.0% |
| ! | TTGGTCTCGACCCATATTTT+TGG | + | chr3.3:48501962-48501981 | MS.gene04181:intron | 40.0% |
| ! | TTTTGGATGTCACAATGGGA+TGG | + | chr3.3:48498805-48498824 | MS.gene04181:intron | 40.0% |
| !! | GATAACTGTGTATGGACTAG+GGG | + | chr3.3:48501223-48501242 | MS.gene04181:intron | 40.0% |
| !! | GCCAAGATAACGGAAAAGAA+CGG | + | chr3.3:48500252-48500271 | MS.gene04181:intron | 40.0% |
| !! | GTACGAGACTTTGAAGCATA+AGG | - | chr3.3:48501184-48501203 | None:intergenic | 40.0% |
| !! | TGAGCCATTTTCCCCTTAAT+GGG | - | chr3.3:48498994-48499013 | None:intergenic | 40.0% |
| !! | TGTTGGGTGTTCTGAAGATT+CGG | - | chr3.3:48499639-48499658 | None:intergenic | 40.0% |
| !! | TTGAGCCATTTTCCCCTTAA+TGG | - | chr3.3:48498995-48499014 | None:intergenic | 40.0% |
| AAATTCGATGACTCCCTCGA+AGG | - | chr3.3:48502319-48502338 | None:intergenic | 45.0% | |
| AACACTCCAAAAATGCGTCC+CGG | + | chr3.3:48497657-48497676 | MS.gene04181:CDS | 45.0% | |
| AACCCCCATTAAGGGGAAAA+TGG | + | chr3.3:48498987-48499006 | MS.gene04181:intron | 45.0% | |
| AAGTGGTCTGGTATGTACGA+CGG | + | chr3.3:48498246-48498265 | MS.gene04181:intron | 45.0% | |
| AATTTGGGAGAGCTCCTCTA+AGG | + | chr3.3:48500347-48500366 | MS.gene04181:intron | 45.0% | |
| ACAACCTAACCCCCATTAAG+GGG | + | chr3.3:48498980-48498999 | MS.gene04181:intron | 45.0% | |
| ACCGGTACAGTTACATGAGT+CGG | - | chr3.3:48499766-48499785 | None:intergenic | 45.0% | |
| ACCTTCGGCAACAATGAACT+TGG | - | chr3.3:48499444-48499463 | None:intergenic | 45.0% | |
| AGACCAATTCGACTACGATG+GGG | + | chr3.3:48500712-48500731 | MS.gene04181:intron | 45.0% | |
| AGAGGACCTAAAGTGCAATC+AGG | + | chr3.3:48502201-48502220 | MS.gene04181:intron | 45.0% | |
| AGGAGCTCTCCCAAATTGTA+AGG | - | chr3.3:48500344-48500363 | None:intergenic | 45.0% | |
| AGTGCAACGAGATCAACATG+AGG | + | chr3.3:48500558-48500577 | MS.gene04181:intron | 45.0% | |
| AGTTACAGTCCATGGTTCGT+GGG | + | chr3.3:48500593-48500612 | MS.gene04181:intron | 45.0% | |
| CCAACAAACACACTACCGTT+AGG | + | chr3.3:48501764-48501783 | MS.gene04181:CDS | 45.0% | |
| CCTAACGGTAGTGTGTTTGT+TGG | - | chr3.3:48501767-48501786 | None:intergenic | 45.0% | |
| CGAAAATCACTTGAGCATGG+TGG | - | chr3.3:48500074-48500093 | None:intergenic | 45.0% | |
| CGGCAACAATGAACTTGGAA+GGG | - | chr3.3:48499439-48499458 | None:intergenic | 45.0% | |
| CGTGTAGGAAATAGGAATGG+AGG | + | chr3.3:48501031-48501050 | MS.gene04181:intron | 45.0% | |
| CGTGTATGTCTATCTTGAGG+GGG | + | chr3.3:48500806-48500825 | MS.gene04181:intron | 45.0% | |
| GACCGTGTAGGAAATAGGAA+TGG | + | chr3.3:48501028-48501047 | MS.gene04181:intron | 45.0% | |
| GAGCTCTCCCAAATTGTAAG+GGG | - | chr3.3:48500342-48500361 | None:intergenic | 45.0% | |
| GAGGGACCAAAAAGTAAGTC+AGG | - | chr3.3:48501921-48501940 | None:intergenic | 45.0% | |
| GAGGTGAAAGATGGTGTCTA+TGG | - | chr3.3:48500126-48500145 | None:intergenic | 45.0% | |
| GCCAGTTGCAAAAAGCTTAG+TGG | + | chr3.3:48498309-48498328 | MS.gene04181:intron | 45.0% | |
| GGAGCTCTCCCAAATTGTAA+GGG | - | chr3.3:48500343-48500362 | None:intergenic | 45.0% | |
| GGTCGAAAATCACTTGAGCA+TGG | - | chr3.3:48500077-48500096 | None:intergenic | 45.0% | |
| GTGCAACGAGATCAACATGA+GGG | + | chr3.3:48500559-48500578 | MS.gene04181:intron | 45.0% | |
| GTGTATGTCTATCTTGAGGG+GGG | + | chr3.3:48500807-48500826 | MS.gene04181:intron | 45.0% | |
| GTTGAAGGCAAAATGGCAAG+TGG | - | chr3.3:48499161-48499180 | None:intergenic | 45.0% | |
| TAAAATGGAAAGGACACCCG+AGG | - | chr3.3:48501356-48501375 | None:intergenic | 45.0% | |
| TAGGGCCAAAAATCTGGATC+AGG | + | chr3.3:48502113-48502132 | MS.gene04181:intron | 45.0% | |
| TCCAAGTTCATTGTTGCCGA+AGG | + | chr3.3:48499440-48499459 | MS.gene04181:CDS | 45.0% | |
| TCGGCAACAATGAACTTGGA+AGG | - | chr3.3:48499440-48499459 | None:intergenic | 45.0% | |
| TGAGAGGTGGCATTTAGCAT+GGG | + | chr3.3:48500032-48500051 | MS.gene04181:intron | 45.0% | |
| TGCAACGAGATCAACATGAG+GGG | + | chr3.3:48500560-48500579 | MS.gene04181:intron | 45.0% | |
| TGGGAAGTAGCAGATAGGTT+GGG | + | chr3.3:48500612-48500631 | MS.gene04181:intron | 45.0% | |
| TGTATGTCTATCTTGAGGGG+GGG | + | chr3.3:48500808-48500827 | MS.gene04181:intron | 45.0% | |
| TTGAGAGGTGGCATTTAGCA+TGG | + | chr3.3:48500031-48500050 | MS.gene04181:intron | 45.0% | |
| TTTGCTCAGATACCCTTCCT+AGG | + | chr3.3:48500164-48500183 | MS.gene04181:intron | 45.0% | |
| ! | ACAACTAGCCTCTTCAGATG+GGG | - | chr3.3:48499858-48499877 | None:intergenic | 45.0% |
| ! | AGTCAAAGAACTGCCACTTC+TGG | + | chr3.3:48502071-48502090 | MS.gene04181:intron | 45.0% |
| ! | AGTGTTCGGCAACCTTTTCT+TGG | + | chr3.3:48501658-48501677 | MS.gene04181:intron | 45.0% |
| ! | CCCACTAAGCTTTTTGCAAC+TGG | - | chr3.3:48498313-48498332 | None:intergenic | 45.0% |
| ! | GTCAAAGAACTGCCACTTCT+GGG | + | chr3.3:48502072-48502091 | MS.gene04181:intron | 45.0% |
| ! | GTGGACCTGATCCAGATTTT+TGG | - | chr3.3:48502121-48502140 | None:intergenic | 45.0% |
| ! | GTGTTCGGCAACCTTTTCTT+GGG | + | chr3.3:48501659-48501678 | MS.gene04181:intron | 45.0% |
| ! | TTTTCCCCTTAATGGGGGTT+AGG | - | chr3.3:48498987-48499006 | None:intergenic | 45.0% |
| !! | AGCCATTTTCCCCTTAATGG+GGG | - | chr3.3:48498992-48499011 | None:intergenic | 45.0% |
| !! | AGGAAGGGTATCTGAGCAAA+GGG | - | chr3.3:48500164-48500183 | None:intergenic | 45.0% |
| !! | ATCTTGGCCTTGCTTTCTGA+TGG | - | chr3.3:48500240-48500259 | None:intergenic | 45.0% |
| !! | GAGCCATTTTCCCCTTAATG+GGG | - | chr3.3:48498993-48499012 | None:intergenic | 45.0% |
| !! | GTTGGGTGTTCTGAAGATTC+AGG | - | chr3.3:48499638-48499657 | None:intergenic | 45.0% |
| !! | GTTGGGTGTTCTGAAGATTC+GGG | - | chr3.3:48499638-48499657 | None:intergenic | 45.0% |
| !! | TAGGAAGGGTATCTGAGCAA+AGG | - | chr3.3:48500165-48500184 | None:intergenic | 45.0% |
| !! | TGTATGGACTAGGGGATGTT+TGG | + | chr3.3:48501231-48501250 | MS.gene04181:intron | 45.0% |
| ACACTCCAAAAATGCGTCCC+GGG | + | chr3.3:48497658-48497677 | MS.gene04181:CDS | 50.0% | |
| ACCTTCAGTAGTTGTGGCCT+TGG | - | chr3.3:48501560-48501579 | None:intergenic | 50.0% | |
| AGTAAATCTTCCAGCTGGCC+CGG | - | chr3.3:48497679-48497698 | None:intergenic | 50.0% | |
| ATCCATCAACACGAGGGAAG+AGG | - | chr3.3:48500207-48500226 | None:intergenic | 50.0% | |
| ATGACTCCCTCGAAGGTCAA+TGG | - | chr3.3:48502312-48502331 | None:intergenic | 50.0% | |
| ATTAAGCCACTGGACCGTGT+AGG | + | chr3.3:48501016-48501035 | MS.gene04181:intron | 50.0% | |
| CACTGGACCGTGTAGGAAAT+AGG | + | chr3.3:48501023-48501042 | MS.gene04181:intron | 50.0% | |
| CAGTTACAGTCCATGGTTCG+TGG | + | chr3.3:48500592-48500611 | MS.gene04181:intron | 50.0% | |
| CCCGACTCATGTAACTGTAC+CGG | + | chr3.3:48499762-48499781 | MS.gene04181:intron | 50.0% | |
| CCGGTACAGTTACATGAGTC+GGG | - | chr3.3:48499765-48499784 | None:intergenic | 50.0% | |
| CTATTTCCTACACGGTCCAG+TGG | - | chr3.3:48501025-48501044 | None:intergenic | 50.0% | |
| CTTCCCCATCGTAGTCGAAT+TGG | - | chr3.3:48500718-48500737 | None:intergenic | 50.0% | |
| CTTGAACTCACATGGAGCAC+CGG | - | chr3.3:48499784-48499803 | None:intergenic | 50.0% | |
| GAGAGGTGGCATTTAGCATG+GGG | + | chr3.3:48500033-48500052 | MS.gene04181:intron | 50.0% | |
| GAGCAAAGGGTAGGGGATAA+TGG | - | chr3.3:48500151-48500170 | None:intergenic | 50.0% | |
| GCTCCGGTTATGTCAGAAAG+AGG | + | chr3.3:48500369-48500388 | MS.gene04181:intron | 50.0% | |
| GCTTCAAGCGAAGTCCTGAT+AGG | + | chr3.3:48497471-48497490 | MS.gene04181:CDS | 50.0% | |
| GGAGCTCATTACACGGAGTT+TGG | - | chr3.3:48501163-48501182 | None:intergenic | 50.0% | |
| GGCCACAACTACTGAAGGTT+TGG | + | chr3.3:48501561-48501580 | MS.gene04181:CDS | 50.0% | |
| GGGAAGTAGCAGATAGGTTG+GGG | + | chr3.3:48500613-48500632 | MS.gene04181:intron | 50.0% | |
| GGGTATCTGAGCAAAGGGTA+GGG | - | chr3.3:48500159-48500178 | None:intergenic | 50.0% | |
| GGTATCTGAGCAAAGGGTAG+GGG | - | chr3.3:48500158-48500177 | None:intergenic | 50.0% | |
| GTGGGAAGTAGCAGATAGGT+TGG | + | chr3.3:48500611-48500630 | MS.gene04181:intron | 50.0% | |
| GTTCGTGGGAAGTAGCAGAT+AGG | + | chr3.3:48500607-48500626 | MS.gene04181:intron | 50.0% | |
| TCCAAGGCCACAACTACTGA+AGG | + | chr3.3:48501556-48501575 | MS.gene04181:CDS | 50.0% | |
| TCCATCAACACGAGGGAAGA+GGG | - | chr3.3:48500206-48500225 | None:intergenic | 50.0% | |
| TGACATAACCGGAGCCTTAG+AGG | - | chr3.3:48500364-48500383 | None:intergenic | 50.0% | |
| ! | AGCAGATAGGTTGGGGAGAA+TGG | + | chr3.3:48500620-48500639 | MS.gene04181:intron | 50.0% |
| ! | AGGGTATCTGAGCAAAGGGT+AGG | - | chr3.3:48500160-48500179 | None:intergenic | 50.0% |
| ! | CAAAGGGTAGGGGATAATGG+AGG | - | chr3.3:48500148-48500167 | None:intergenic | 50.0% |
| ! | TCAGTAGTTGTGGCCTTGGA+AGG | - | chr3.3:48501556-48501575 | None:intergenic | 50.0% |
| ! | TGTGGCCTTGGAAGGATCTT+CGG | - | chr3.3:48501548-48501567 | None:intergenic | 50.0% |
| AAGGGGAAGCAGTCCTAGGA+AGG | - | chr3.3:48500180-48500199 | None:intergenic | 55.0% | |
| AGGGGAAGCAGTCCTAGGAA+GGG | - | chr3.3:48500179-48500198 | None:intergenic | 55.0% | |
| ATGGAAAGGACACCCGAGGA+TGG | - | chr3.3:48501352-48501371 | None:intergenic | 55.0% | |
| GGTGGCAGAACACTCCCAAT+TGG | - | chr3.3:48499536-48499555 | None:intergenic | 55.0% | |
| GTAAATCTTCCAGCTGGCCC+GGG | - | chr3.3:48497678-48497697 | None:intergenic | 55.0% | |
| TCCTAGGACTGCTTCCCCTT+CGG | + | chr3.3:48500180-48500199 | MS.gene04181:intron | 55.0% | |
| TGGCATCACGTGGGCCAAAA+AGG | + | chr3.3:48497713-48497732 | MS.gene04181:CDS | 55.0% | |
| ! | CTGCTACTTCCCACGAACCA+TGG | - | chr3.3:48500605-48500624 | None:intergenic | 55.0% |
| !! | AGGGTAGGGGATAATGGAGG+AGG | - | chr3.3:48500145-48500164 | None:intergenic | 55.0% |
| GCCCTCTTCCCTCGTGTTGA+TGG | + | chr3.3:48500202-48500221 | MS.gene04181:intron | 60.0% | |
| TGCTGCGTCACAAGGATGGG+CGG | + | chr3.3:48497444-48497463 | MS.gene04181:CDS | 60.0% | |
| !! | GGAGAGCTCCTCTAAGGCTC+CGG | + | chr3.3:48500353-48500372 | MS.gene04181:intron | 60.0% |
| AAAATGCGTCCCGGGCCAGC+TGG | + | chr3.3:48497666-48497685 | MS.gene04181:CDS | 65.0% | |
| ACACGAGGGAAGAGGGCCGA+AGG | - | chr3.3:48500199-48500218 | None:intergenic | 65.0% | |
| ACGAGGGAAGAGGGCCGAAG+GGG | - | chr3.3:48500197-48500216 | None:intergenic | 65.0% | |
| CACGAGGGAAGAGGGCCGAA+GGG | - | chr3.3:48500198-48500217 | None:intergenic | 65.0% | |
| GCCGAAGGGGAAGCAGTCCT+AGG | - | chr3.3:48500184-48500203 | None:intergenic | 65.0% | |
| ! | GCTGGCCCGGGACGCATTTT+TGG | - | chr3.3:48497666-48497685 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 48497443 | 48502340 | 48497443 | ID=MS.gene04181 |
| chr3.3 | mRNA | 48497443 | 48502340 | 48497443 | ID=MS.gene04181.t1;Parent=MS.gene04181 |
| chr3.3 | exon | 48497443 | 48497528 | 48497443 | ID=MS.gene04181.t1.exon1;Parent=MS.gene04181.t1 |
| chr3.3 | CDS | 48497443 | 48497528 | 48497443 | ID=cds.MS.gene04181.t1;Parent=MS.gene04181.t1 |
| chr3.3 | exon | 48497623 | 48497734 | 48497623 | ID=MS.gene04181.t1.exon2;Parent=MS.gene04181.t1 |
| chr3.3 | CDS | 48497623 | 48497734 | 48497623 | ID=cds.MS.gene04181.t1;Parent=MS.gene04181.t1 |
| chr3.3 | exon | 48498196 | 48498255 | 48498196 | ID=MS.gene04181.t1.exon3;Parent=MS.gene04181.t1 |
| chr3.3 | CDS | 48498196 | 48498255 | 48498196 | ID=cds.MS.gene04181.t1;Parent=MS.gene04181.t1 |
| chr3.3 | exon | 48499422 | 48499496 | 48499422 | ID=MS.gene04181.t1.exon4;Parent=MS.gene04181.t1 |
| chr3.3 | CDS | 48499422 | 48499496 | 48499422 | ID=cds.MS.gene04181.t1;Parent=MS.gene04181.t1 |
| chr3.3 | exon | 48499629 | 48499709 | 48499629 | ID=MS.gene04181.t1.exon5;Parent=MS.gene04181.t1 |
| chr3.3 | CDS | 48499629 | 48499709 | 48499629 | ID=cds.MS.gene04181.t1;Parent=MS.gene04181.t1 |
| chr3.3 | exon | 48501538 | 48501612 | 48501538 | ID=MS.gene04181.t1.exon6;Parent=MS.gene04181.t1 |
| chr3.3 | CDS | 48501538 | 48501612 | 48501538 | ID=cds.MS.gene04181.t1;Parent=MS.gene04181.t1 |
| chr3.3 | exon | 48501740 | 48501820 | 48501740 | ID=MS.gene04181.t1.exon7;Parent=MS.gene04181.t1 |
| chr3.3 | CDS | 48501740 | 48501820 | 48501740 | ID=cds.MS.gene04181.t1;Parent=MS.gene04181.t1 |
| chr3.3 | exon | 48502257 | 48502340 | 48502257 | ID=MS.gene04181.t1.exon8;Parent=MS.gene04181.t1 |
| chr3.3 | CDS | 48502257 | 48502340 | 48502257 | ID=cds.MS.gene04181.t1;Parent=MS.gene04181.t1 |
| Gene Sequence |
| Protein sequence |
