Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene041839.t1 | XP_003609751.2 | 98.3 | 922 | 16 | 0 | 1 | 922 | 3 | 924 | 0.00E+00 | 1754.6 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene041839.t1 | O23463 | 56.5 | 929 | 383 | 10 | 1 | 915 | 1 | 922 | 5.0e-277 | 955.3 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene041839.t1 | G7JMT3 | 98.3 | 922 | 16 | 0 | 1 | 922 | 3 | 924 | 0.0e+00 | 1754.6 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene041839.t1 | TF | CAMTA |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene041839.t1 | MTR_4g121840 | 98.373 | 922 | 15 | 0 | 1 | 922 | 3 | 924 | 0.0 | 1899 |
MS.gene041839.t1 | MTR_4g121840 | 97.248 | 872 | 24 | 0 | 51 | 922 | 23 | 894 | 0.0 | 1769 |
MS.gene041839.t1 | MTR_2g034650 | 71.320 | 917 | 250 | 3 | 3 | 918 | 4 | 908 | 0.0 | 1360 |
MS.gene041839.t1 | MTR_2g008840 | 31.176 | 1020 | 556 | 25 | 23 | 915 | 13 | 1013 | 4.60e-132 | 422 |
MS.gene041839.t1 | MTR_2g008840 | 30.777 | 991 | 540 | 25 | 52 | 915 | 2 | 973 | 8.63e-123 | 397 |
MS.gene041839.t1 | MTR_2g008840 | 30.676 | 903 | 482 | 24 | 23 | 800 | 13 | 896 | 1.54e-103 | 343 |
MS.gene041839.t1 | MTR_8g090205 | 32.857 | 630 | 388 | 13 | 308 | 908 | 275 | 898 | 3.98e-92 | 312 |
MS.gene041839.t1 | MTR_8g090205 | 33.170 | 612 | 379 | 12 | 308 | 895 | 275 | 880 | 1.15e-91 | 311 |
MS.gene041839.t1 | MTR_8g090205 | 32.857 | 630 | 388 | 13 | 308 | 908 | 434 | 1057 | 5.32e-91 | 312 |
MS.gene041839.t1 | MTR_8g090205 | 56.154 | 130 | 57 | 0 | 24 | 153 | 12 | 141 | 4.44e-41 | 164 |
MS.gene041839.t1 | MTR_8g090205 | 32.857 | 630 | 388 | 13 | 308 | 908 | 432 | 1055 | 6.02e-91 | 312 |
MS.gene041839.t1 | MTR_8g090205 | 55.725 | 131 | 58 | 0 | 23 | 153 | 9 | 139 | 4.66e-41 | 164 |
MS.gene041839.t1 | MTR_8g090205 | 33.170 | 612 | 379 | 12 | 308 | 895 | 434 | 1039 | 2.01e-90 | 310 |
MS.gene041839.t1 | MTR_8g090205 | 56.154 | 130 | 57 | 0 | 24 | 153 | 12 | 141 | 5.17e-41 | 164 |
MS.gene041839.t1 | MTR_8g090205 | 33.170 | 612 | 379 | 12 | 308 | 895 | 432 | 1037 | 3.11e-90 | 310 |
MS.gene041839.t1 | MTR_8g090205 | 55.725 | 131 | 58 | 0 | 23 | 153 | 9 | 139 | 5.02e-41 | 164 |
MS.gene041839.t1 | MTR_8g080800 | 35.126 | 595 | 323 | 19 | 336 | 905 | 380 | 936 | 2.79e-84 | 291 |
MS.gene041839.t1 | MTR_8g080800 | 48.276 | 145 | 73 | 1 | 22 | 164 | 6 | 150 | 6.93e-39 | 157 |
MS.gene041839.t1 | MTR_4g094215 | 32.039 | 618 | 362 | 15 | 314 | 895 | 386 | 981 | 2.75e-79 | 278 |
MS.gene041839.t1 | MTR_4g094215 | 54.032 | 124 | 57 | 0 | 23 | 146 | 13 | 136 | 9.82e-37 | 150 |
MS.gene041839.t1 | MTR_4g094215 | 32.039 | 618 | 362 | 15 | 314 | 895 | 386 | 981 | 2.94e-79 | 278 |
MS.gene041839.t1 | MTR_4g094215 | 54.032 | 124 | 57 | 0 | 23 | 146 | 13 | 136 | 9.98e-37 | 150 |
MS.gene041839.t1 | MTR_3g085050 | 33.167 | 603 | 338 | 17 | 345 | 917 | 368 | 935 | 5.79e-78 | 274 |
MS.gene041839.t1 | MTR_3g085050 | 52.419 | 124 | 59 | 0 | 24 | 147 | 8 | 131 | 8.98e-38 | 153 |
MS.gene041839.t1 | MTR_3g085050 | 33.333 | 576 | 324 | 16 | 345 | 895 | 368 | 908 | 1.86e-77 | 271 |
MS.gene041839.t1 | MTR_3g085050 | 52.419 | 124 | 59 | 0 | 24 | 147 | 8 | 131 | 7.35e-38 | 153 |
MS.gene041839.t1 | MTR_8g090205 | 31.128 | 514 | 327 | 11 | 308 | 800 | 434 | 941 | 1.52e-63 | 232 |
MS.gene041839.t1 | MTR_8g090205 | 56.154 | 130 | 57 | 0 | 24 | 153 | 12 | 141 | 3.86e-41 | 164 |
MS.gene041839.t1 | MTR_4g094215 | 30.843 | 522 | 306 | 14 | 312 | 800 | 384 | 883 | 1.95e-53 | 202 |
MS.gene041839.t1 | MTR_4g094215 | 54.032 | 124 | 57 | 0 | 23 | 146 | 13 | 136 | 1.01e-36 | 150 |
MS.gene041839.t1 | MTR_8g090200 | 31.522 | 92 | 63 | 0 | 365 | 456 | 312 | 403 | 7.88e-11 | 65.9 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene041839.t1 | AT3G16940 | 55.827 | 901 | 327 | 8 | 7 | 905 | 7 | 838 | 0.0 | 983 |
MS.gene041839.t1 | AT3G16940 | 55.227 | 880 | 323 | 8 | 28 | 905 | 1 | 811 | 0.0 | 944 |
MS.gene041839.t1 | AT3G16940 | 54.523 | 796 | 296 | 7 | 7 | 800 | 7 | 738 | 0.0 | 840 |
MS.gene041839.t1 | AT5G09410 | 31.038 | 944 | 559 | 16 | 23 | 895 | 16 | 938 | 1.78e-130 | 417 |
MS.gene041839.t1 | AT5G09410 | 30.155 | 965 | 558 | 17 | 23 | 895 | 75 | 1015 | 1.96e-121 | 395 |
MS.gene041839.t1 | AT2G22300 | 35.072 | 556 | 336 | 9 | 365 | 914 | 402 | 938 | 1.73e-89 | 306 |
MS.gene041839.t1 | AT2G22300 | 69.231 | 78 | 24 | 0 | 69 | 146 | 1 | 78 | 7.99e-29 | 125 |
MS.gene041839.t1 | AT2G22300 | 35.072 | 556 | 336 | 9 | 365 | 914 | 460 | 996 | 4.57e-89 | 306 |
MS.gene041839.t1 | AT2G22300 | 57.778 | 135 | 57 | 0 | 12 | 146 | 2 | 136 | 1.69e-44 | 174 |
MS.gene041839.t1 | AT2G22300 | 35.072 | 556 | 336 | 9 | 365 | 914 | 460 | 996 | 4.57e-89 | 306 |
MS.gene041839.t1 | AT2G22300 | 57.778 | 135 | 57 | 0 | 12 | 146 | 2 | 136 | 1.69e-44 | 174 |
MS.gene041839.t1 | AT5G09410 | 30.556 | 612 | 388 | 9 | 312 | 895 | 233 | 835 | 3.82e-80 | 278 |
MS.gene041839.t1 | AT5G64220 | 31.046 | 612 | 378 | 11 | 312 | 895 | 403 | 998 | 8.98e-80 | 280 |
MS.gene041839.t1 | AT5G64220 | 48.370 | 184 | 77 | 2 | 23 | 191 | 13 | 193 | 2.41e-44 | 174 |
MS.gene041839.t1 | AT5G64220 | 31.046 | 612 | 378 | 11 | 312 | 895 | 403 | 998 | 8.98e-80 | 280 |
MS.gene041839.t1 | AT5G64220 | 48.370 | 184 | 77 | 2 | 23 | 191 | 13 | 193 | 2.41e-44 | 174 |
MS.gene041839.t1 | AT5G09410 | 30.556 | 612 | 388 | 9 | 312 | 895 | 354 | 956 | 1.71e-79 | 279 |
MS.gene041839.t1 | AT5G09410 | 50.000 | 168 | 73 | 2 | 23 | 179 | 16 | 183 | 2.14e-40 | 162 |
MS.gene041839.t1 | AT1G67310 | 33.059 | 608 | 345 | 16 | 348 | 917 | 415 | 998 | 1.60e-71 | 256 |
MS.gene041839.t1 | AT1G67310 | 47.287 | 129 | 68 | 0 | 19 | 147 | 32 | 160 | 3.49e-36 | 148 |
Find 0 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
32454 | gene | 38110 | 47439 | 38110 | ID=MS.gene041839 |
32454 | mRNA | 38110 | 47439 | 38110 | ID=MS.gene041839.t1;Parent=MS.gene041839 |
32454 | exon | 47376 | 47439 | 47376 | ID=MS.gene041839.t1.exon1;Parent=MS.gene041839.t1 |
32454 | CDS | 47376 | 47439 | 47376 | ID=cds.MS.gene041839.t1;Parent=MS.gene041839.t1 |
32454 | exon | 46729 | 46854 | 46729 | ID=MS.gene041839.t1.exon2;Parent=MS.gene041839.t1 |
32454 | CDS | 46729 | 46854 | 46729 | ID=cds.MS.gene041839.t1;Parent=MS.gene041839.t1 |
32454 | exon | 46244 | 46359 | 46244 | ID=MS.gene041839.t1.exon3;Parent=MS.gene041839.t1 |
32454 | CDS | 46244 | 46359 | 46244 | ID=cds.MS.gene041839.t1;Parent=MS.gene041839.t1 |
32454 | exon | 46036 | 46124 | 46036 | ID=MS.gene041839.t1.exon4;Parent=MS.gene041839.t1 |
32454 | CDS | 46036 | 46124 | 46036 | ID=cds.MS.gene041839.t1;Parent=MS.gene041839.t1 |
32454 | exon | 45872 | 45917 | 45872 | ID=MS.gene041839.t1.exon5;Parent=MS.gene041839.t1 |
32454 | CDS | 45872 | 45917 | 45872 | ID=cds.MS.gene041839.t1;Parent=MS.gene041839.t1 |
32454 | exon | 44535 | 44652 | 44535 | ID=MS.gene041839.t1.exon6;Parent=MS.gene041839.t1 |
32454 | CDS | 44535 | 44652 | 44535 | ID=cds.MS.gene041839.t1;Parent=MS.gene041839.t1 |
32454 | exon | 43983 | 44102 | 43983 | ID=MS.gene041839.t1.exon7;Parent=MS.gene041839.t1 |
32454 | CDS | 43983 | 44102 | 43983 | ID=cds.MS.gene041839.t1;Parent=MS.gene041839.t1 |
32454 | exon | 43835 | 43893 | 43835 | ID=MS.gene041839.t1.exon8;Parent=MS.gene041839.t1 |
32454 | CDS | 43835 | 43893 | 43835 | ID=cds.MS.gene041839.t1;Parent=MS.gene041839.t1 |
32454 | exon | 43283 | 43699 | 43283 | ID=MS.gene041839.t1.exon9;Parent=MS.gene041839.t1 |
32454 | CDS | 43283 | 43699 | 43283 | ID=cds.MS.gene041839.t1;Parent=MS.gene041839.t1 |
32454 | exon | 42163 | 42860 | 42163 | ID=MS.gene041839.t1.exon10;Parent=MS.gene041839.t1 |
32454 | CDS | 42163 | 42860 | 42163 | ID=cds.MS.gene041839.t1;Parent=MS.gene041839.t1 |
32454 | exon | 38742 | 39288 | 38742 | ID=MS.gene041839.t1.exon11;Parent=MS.gene041839.t1 |
32454 | CDS | 38742 | 39288 | 38742 | ID=cds.MS.gene041839.t1;Parent=MS.gene041839.t1 |
32454 | exon | 38270 | 38578 | 38270 | ID=MS.gene041839.t1.exon12;Parent=MS.gene041839.t1 |
32454 | CDS | 38270 | 38578 | 38270 | ID=cds.MS.gene041839.t1;Parent=MS.gene041839.t1 |
32454 | exon | 38110 | 38169 | 38110 | ID=MS.gene041839.t1.exon13;Parent=MS.gene041839.t1 |
32454 | CDS | 38110 | 38169 | 38110 | ID=cds.MS.gene041839.t1;Parent=MS.gene041839.t1 |
Gene Sequence |
Protein sequence |