AlfalfaGEDB | MS.gene041924

M. sativa cultivar XinJiangDaYe / MS.gene041924

KEGG: -
GO: GO:0000166 GO:0003674 GO:0003824 GO:0004672 GO:0005488 GO:0005524 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019538 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0097159 GO:0097367 GO:0140096 GO:1901265 GO:1901363 GO:1901564
PFAM: PF07714.20

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene041924.t1	XP_013457476.1	84.8	348	52	1	1	348	392	738	4.80E-163	583.9

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene041924.t1	Q9SJT0	56.1	319	137	2	28	346	447	762	1.6e-90	334.3

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene041924.t1	A0A072UPA5	84.8	348	52	1	1	348	392	738	3.4e-163	583.9

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene041924.t1	MTR_4g095042	84.770	348	52	1	1	348	392	738	0.0	568
MS.gene041924.t1	MTR_4g095045	82.286	350	60	2	1	348	198	547	0.0	557
MS.gene041924.t1	MTR_4g095032	89.568	278	29	0	71	348	402	679	1.49e-180	520
MS.gene041924.t1	MTR_4g095012	73.443	305	56	1	44	348	435	714	5.42e-150	442
MS.gene041924.t1	MTR_4g061833	54.630	324	145	1	25	348	268	589	2.54e-113	344
MS.gene041924.t1	MTR_4g061833	55.140	321	142	1	25	345	419	737	7.67e-112	345
MS.gene041924.t1	MTR_4g061930	55.140	321	142	1	25	345	419	737	7.67e-112	345
MS.gene041924.t1	MTR_6g048090	54.094	342	151	5	9	345	394	734	7.97e-111	341
MS.gene041924.t1	MTR_8g037700	54.574	317	141	2	30	346	455	768	3.81e-109	338
MS.gene041924.t1	MTR_2g080220	56.944	288	119	1	64	346	453	740	1.66e-108	336

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene041924.t1	AT2G21480	57.632	321	129	3	28	346	447	762	7.33e-111	343
MS.gene041924.t1	AT4G39110	57.009	321	131	3	28	346	448	763	8.50e-111	343
MS.gene041924.t1	AT5G54380	53.153	333	144	5	25	346	417	748	1.10e-108	337
MS.gene041924.t1	AT3G46290	53.395	324	147	2	22	345	403	722	2.25e-108	335
MS.gene041924.t1	AT5G24010	53.870	323	141	2	25	345	410	726	1.30e-107	333
MS.gene041924.t1	AT5G28680	53.963	328	143	3	25	346	434	759	3.04e-107	333
MS.gene041924.t1	AT5G28680	53.963	328	143	3	25	346	434	759	3.04e-107	333
MS.gene041924.t1	AT3G51550	53.774	318	140	3	35	345	457	774	5.08e-107	333
MS.gene041924.t1	AT2G23200	52.000	350	163	4	1	348	382	728	9.49e-107	331
MS.gene041924.t1	AT5G59700	63.137	255	94	0	91	345	465	719	1.36e-106	330

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Find 77 sgRNAs with CRISPR-Local

Find 88 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGAAGTGTACCTGGGTC+AGG	0.510067	8.4:+25665891	MS.gene041924:CDS
AAATCTGATGTTTATTCTTT+TGG	0.151712	8.4:+25666350	MS.gene041924:CDS
AACAAATCAGAATTCTCAGC+AGG	0.527234	8.4:-25665648	None:intergenic
AACAAGTCAATTTGGCTGAA+TGG	0.428527	8.4:+25666432	MS.gene041924:CDS
AATACCCTATTAAGGAAACG+AGG	0.747810	8.4:-25665974	None:intergenic
AATAGGATAATTGGAAAGGG+TGG	0.586573	8.4:+25665816	MS.gene041924:CDS
AATTCTGGGAGGTTTAGTTC+TGG	0.460843	8.4:+25665572	MS.gene041924:CDS
ACAAGTCAATTTGGCTGAAT+GGG	0.382966	8.4:+25666433	MS.gene041924:CDS
ACACGTGTTAAAGGAACTTT+TGG	0.298965	8.4:+25666284	MS.gene041924:CDS
ACATAAGAATGTTCATCAAG+AGG	0.604740	8.4:-25666257	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ACATAAGAATGTTCATCAAG+AGG	-	chr8.4:25666260-25666279	None:intergenic	30.0%
ATATCATGAATTTCAAACCG+AGG	+	chr8.4:25665920-25665939	MS.gene041924:CDS	30.0%
CAAGTCAAACAAGACAAATT+TGG	-	chr8.4:25666074-25666093	None:intergenic	30.0%
TCTAAGTTAACTAAACCTGA+TGG	-	chr8.4:25665504-25665523	None:intergenic	30.0%
TTCATCACAATACCCTATTA+AGG	-	chr8.4:25665985-25666004	None:intergenic	30.0%
TTTGATGCGAATAGGATAAT+TGG	+	chr8.4:25665807-25665826	MS.gene041924:CDS	30.0%
AACAAATCAGAATTCTCAGC+AGG	-	chr8.4:25665651-25665670	None:intergenic	35.0%
AACAAGTCAATTTGGCTGAA+TGG	+	chr8.4:25666432-25666451	MS.gene041924:CDS	35.0%
AATACCCTATTAAGGAAACG+AGG	-	chr8.4:25665977-25665996	None:intergenic	35.0%
AATAGGATAATTGGAAAGGG+TGG	+	chr8.4:25665816-25665835	MS.gene041924:CDS	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8.4	gene	25665486	25666532	25665486	ID=MS.gene041924
chr8.4	mRNA	25665486	25666532	25665486	ID=MS.gene041924.t1;Parent=MS.gene041924
chr8.4	exon	25665486	25666532	25665486	ID=MS.gene041924.t1.exon1;Parent=MS.gene041924.t1
chr8.4	CDS	25665486	25666532	25665486	ID=cds.MS.gene041924.t1;Parent=MS.gene041924.t1

Gene Sequence

>MS.gene041924

ATGAAAGTGATTGATCCATCAGGTTTAGTTAACTTAGATGATTCGAATACAAATTTGAAGATTAGTCTTCCTGTGGTGGTGGTTTCAATTCTGGGAGGTTTAGTTCTGGTTTCTGTTATGGTGGTTTTGTTTCTTTGGATTAGTAAAATAAGGAAACAAAGGCCTGCTGAGAATTCTGATTTGTTGGAGATTCCAGCTGCTGCAGGAGGAATTTCTCATTGCAGACTAACTTATGGAAAAACAACTCAACGCTCACTTTTACCTAACATAAACCTTGGCCTGAATATCTCCTTGCATGTTCTTCAACTCGCAACAGAGGATTTTGATGCGAATAGGATAATTGGAAAGGGTGGTTTTGGAAATGTTTATAAGGGAGTTCTCAAGAATGGAATGAATGTGGCAGCGAAAAGAAGTGTACCTGGGTCAGGTCAAGGATATCATGAATTTCAAACCGAGGTAATGGTTTTGTCCAAGATCTGTCGCATACACCTCGTTTCCTTAATAGGGTATTGTGATGAAAGGTGTGAGATGATACTTGTTTATGATTACATGGAAAATGGTACACTTAGAGAGAATTTGTACAATCCAAATTTGTCTTGTTTGACTTGGAAGCAAAGGCTTGAGATTTGTATTGGTGCTGCTAGAGGTCTTCATTACCTTCACAAAGGAGTAGCCGGTGGAATAATCCACTGTGATGTGAAATCCACTAATATATTGCTTGACGAGAATCTTGTTGCTAAAGTTGCTGATTTTGGTCTTTCAAGGACAGGTCCTCTTGATGAACATTCTTATGTCAGCACACGTGTTAAAGGAACTTTTGGGTATCTTGATCCTGATTACTTTAGATCACAACAGCTTATAGAAAAATCTGATGTTTATTCTTTTGGGGTGGTTCTACTTGAAGTGTTGTGCGCAAGACCAGCCATCGAACTGTCTTGTCCAAGTGAACAAGTCAATTTGGCTGAATGGGGATTGCTTTGCAAAGACAAAGGGACACTTGAAGAGATCGTTGATATTTCCATCAAGGCACAAATTAATCAAAACTAA

Protein sequence

>MS.gene041924.t1

MKVIDPSGLVNLDDSNTNLKISLPVVVVSILGGLVLVSVMVVLFLWISKIRKQRPAENSDLLEIPAAAGGISHCRLTYGKTTQRSLLPNINLGLNISLHVLQLATEDFDANRIIGKGGFGNVYKGVLKNGMNVAAKRSVPGSGQGYHEFQTEVMVLSKICRIHLVSLIGYCDERCEMILVYDYMENGTLRENLYNPNLSCLTWKQRLEICIGAARGLHYLHKGVAGGIIHCDVKSTNILLDENLVAKVADFGLSRTGPLDEHSYVSTRVKGTFGYLDPDYFRSQQLIEKSDVYSFGVVLLEVLCARPAIELSCPSEQVNLAEWGLLCKDKGTLEEIVDISIKAQINQN