Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene042085.t1 | XP_013458658.1 | 96 | 199 | 0 | 3 | 1 | 196 | 1 | 194 | 1.00E-100 | 376.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene042085.t1 | Q84W66 | 60.9 | 207 | 62 | 5 | 5 | 194 | 4 | 208 | 4.7e-54 | 212.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene042085.t1 | I3TAW1 | 96.0 | 199 | 0 | 3 | 1 | 196 | 1 | 194 | 7.3e-101 | 376.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene042085.t1 | TF | NF-YB |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene042085.t1 | MTR_4g133952 | 93.061 | 245 | 2 | 5 | 1 | 235 | 1 | 240 | 1.14e-164 | 454 |
| MS.gene042085.t1 | MTR_1g039040 | 81.188 | 101 | 19 | 0 | 58 | 158 | 4 | 104 | 1.52e-58 | 184 |
| MS.gene042085.t1 | MTR_2g026710 | 61.207 | 116 | 41 | 1 | 58 | 173 | 15 | 126 | 5.13e-51 | 164 |
| MS.gene042085.t1 | MTR_5g095740 | 61.739 | 115 | 44 | 0 | 41 | 155 | 4 | 118 | 2.02e-50 | 162 |
| MS.gene042085.t1 | MTR_7g061270 | 68.750 | 96 | 30 | 0 | 58 | 153 | 24 | 119 | 1.87e-49 | 160 |
| MS.gene042085.t1 | MTR_3g058980 | 70.103 | 97 | 29 | 0 | 59 | 155 | 26 | 122 | 1.90e-49 | 160 |
| MS.gene042085.t1 | MTR_7g100650 | 68.750 | 96 | 30 | 0 | 58 | 153 | 24 | 119 | 2.80e-49 | 159 |
| MS.gene042085.t1 | MTR_1g072790 | 62.069 | 116 | 42 | 1 | 40 | 153 | 7 | 122 | 9.15e-49 | 158 |
| MS.gene042085.t1 | MTR_4g119500 | 55.556 | 126 | 56 | 0 | 41 | 166 | 3 | 128 | 1.63e-48 | 156 |
| MS.gene042085.t1 | MTR_1g088860 | 60.177 | 113 | 44 | 1 | 42 | 154 | 19 | 130 | 2.44e-48 | 157 |
| MS.gene042085.t1 | MTR_8g091720 | 44.633 | 177 | 72 | 3 | 59 | 218 | 27 | 194 | 3.66e-47 | 155 |
| MS.gene042085.t1 | MTR_8g093920 | 60.606 | 99 | 39 | 0 | 59 | 157 | 39 | 137 | 1.72e-45 | 151 |
| MS.gene042085.t1 | MTR_0392s0020 | 61.616 | 99 | 38 | 0 | 58 | 156 | 16 | 114 | 3.22e-45 | 148 |
| MS.gene042085.t1 | MTR_4g133938 | 65.957 | 94 | 32 | 0 | 61 | 154 | 20 | 113 | 5.26e-44 | 145 |
| MS.gene042085.t1 | MTR_1g083070 | 51.087 | 92 | 45 | 0 | 60 | 151 | 4 | 95 | 2.49e-33 | 117 |
| MS.gene042085.t1 | MTR_1g029070 | 47.475 | 99 | 52 | 0 | 59 | 157 | 51 | 149 | 4.77e-28 | 105 |
| MS.gene042085.t1 | MTR_5g095900 | 50.000 | 92 | 46 | 0 | 57 | 148 | 13 | 104 | 9.40e-25 | 97.1 |
| MS.gene042085.t1 | MTR_1g028480 | 57.143 | 63 | 27 | 0 | 90 | 152 | 19 | 81 | 6.39e-21 | 84.7 |
| MS.gene042085.t1 | MTR_1g029100 | 40.789 | 76 | 45 | 0 | 65 | 140 | 7 | 82 | 9.08e-20 | 81.3 |
| MS.gene042085.t1 | MTR_2g056000 | 38.272 | 81 | 50 | 0 | 60 | 140 | 41 | 121 | 2.49e-17 | 77.4 |
| MS.gene042085.t1 | MTR_4g112380 | 37.975 | 79 | 49 | 0 | 60 | 138 | 11 | 89 | 1.88e-15 | 71.6 |
| MS.gene042085.t1 | MTR_5g095860 | 39.785 | 93 | 42 | 2 | 60 | 148 | 16 | 98 | 1.55e-12 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene042085.t1 | AT5G47670 | 60.849 | 212 | 62 | 6 | 5 | 198 | 4 | 212 | 4.67e-74 | 224 |
| MS.gene042085.t1 | AT5G47670 | 60.849 | 212 | 62 | 6 | 5 | 198 | 4 | 212 | 4.67e-74 | 224 |
| MS.gene042085.t1 | AT5G47670 | 65.537 | 177 | 41 | 5 | 39 | 198 | 10 | 183 | 8.53e-69 | 210 |
| MS.gene042085.t1 | AT1G21970 | 57.923 | 183 | 56 | 4 | 24 | 190 | 12 | 189 | 6.25e-64 | 199 |
| MS.gene042085.t1 | AT4G14540 | 61.739 | 115 | 44 | 0 | 42 | 156 | 3 | 117 | 1.35e-51 | 165 |
| MS.gene042085.t1 | AT2G38880 | 60.714 | 112 | 44 | 0 | 42 | 153 | 3 | 114 | 5.23e-50 | 160 |
| MS.gene042085.t1 | AT2G38880 | 60.714 | 112 | 44 | 0 | 42 | 153 | 3 | 114 | 6.35e-50 | 160 |
| MS.gene042085.t1 | AT2G38880 | 60.714 | 112 | 44 | 0 | 42 | 153 | 3 | 114 | 6.35e-50 | 160 |
| MS.gene042085.t1 | AT2G38880 | 60.714 | 112 | 44 | 0 | 42 | 153 | 3 | 114 | 6.35e-50 | 160 |
| MS.gene042085.t1 | AT5G47640 | 68.687 | 99 | 31 | 0 | 59 | 157 | 26 | 124 | 9.74e-50 | 161 |
| MS.gene042085.t1 | AT2G37060 | 61.818 | 110 | 42 | 0 | 44 | 153 | 14 | 123 | 3.36e-49 | 159 |
| MS.gene042085.t1 | AT2G37060 | 61.818 | 110 | 42 | 0 | 44 | 153 | 14 | 123 | 3.36e-49 | 159 |
| MS.gene042085.t1 | AT2G37060 | 61.818 | 110 | 42 | 0 | 44 | 153 | 14 | 123 | 3.36e-49 | 159 |
| MS.gene042085.t1 | AT3G53340 | 54.483 | 145 | 60 | 3 | 58 | 198 | 27 | 169 | 1.82e-48 | 157 |
| MS.gene042085.t1 | AT3G53340 | 54.483 | 145 | 60 | 3 | 58 | 198 | 27 | 169 | 1.82e-48 | 157 |
| MS.gene042085.t1 | AT2G38880 | 59.259 | 108 | 44 | 0 | 42 | 149 | 3 | 110 | 7.53e-47 | 152 |
| MS.gene042085.t1 | AT2G38880 | 65.591 | 93 | 32 | 0 | 58 | 150 | 19 | 111 | 3.60e-46 | 149 |
| MS.gene042085.t1 | AT2G38880 | 58.716 | 109 | 45 | 0 | 42 | 150 | 3 | 111 | 5.72e-46 | 150 |
| MS.gene042085.t1 | AT2G38880 | 58.716 | 109 | 45 | 0 | 42 | 150 | 3 | 111 | 5.72e-46 | 150 |
| MS.gene042085.t1 | AT2G38880 | 65.591 | 93 | 32 | 0 | 58 | 150 | 19 | 111 | 2.76e-45 | 149 |
| MS.gene042085.t1 | AT2G38880 | 65.591 | 93 | 32 | 0 | 58 | 150 | 19 | 111 | 2.76e-45 | 149 |
| MS.gene042085.t1 | AT2G38880 | 65.591 | 93 | 32 | 0 | 58 | 150 | 19 | 111 | 2.76e-45 | 149 |
| MS.gene042085.t1 | AT2G13570 | 62.887 | 97 | 36 | 0 | 59 | 155 | 35 | 131 | 6.23e-45 | 150 |
| MS.gene042085.t1 | AT3G53340 | 66.667 | 93 | 31 | 0 | 58 | 150 | 27 | 119 | 8.99e-45 | 146 |
| MS.gene042085.t1 | AT2G47810 | 59.615 | 104 | 42 | 0 | 51 | 154 | 42 | 145 | 9.17e-45 | 147 |
| MS.gene042085.t1 | AT3G53340 | 67.021 | 94 | 31 | 0 | 58 | 151 | 27 | 120 | 1.15e-44 | 147 |
| MS.gene042085.t1 | AT3G53340 | 67.021 | 94 | 31 | 0 | 58 | 151 | 27 | 120 | 1.15e-44 | 147 |
| MS.gene042085.t1 | AT1G09030 | 54.167 | 96 | 44 | 0 | 60 | 155 | 3 | 98 | 1.11e-37 | 129 |
| MS.gene042085.t1 | AT5G23090 | 31.731 | 104 | 69 | 1 | 60 | 161 | 11 | 114 | 5.27e-17 | 75.9 |
| MS.gene042085.t1 | AT5G23090 | 31.731 | 104 | 69 | 1 | 60 | 161 | 11 | 114 | 5.27e-17 | 75.9 |
| MS.gene042085.t1 | AT5G23090 | 31.731 | 104 | 69 | 1 | 60 | 161 | 11 | 114 | 5.27e-17 | 75.9 |
| MS.gene042085.t1 | AT5G23090 | 32.653 | 98 | 64 | 1 | 60 | 155 | 11 | 108 | 1.20e-16 | 75.1 |
| MS.gene042085.t1 | AT5G08190 | 32.653 | 98 | 64 | 1 | 60 | 155 | 11 | 108 | 2.88e-16 | 73.9 |
| MS.gene042085.t1 | AT5G08190 | 31.373 | 102 | 68 | 1 | 60 | 159 | 11 | 112 | 3.86e-16 | 73.6 |
| MS.gene042085.t1 | AT5G23090 | 32.558 | 86 | 56 | 1 | 78 | 161 | 16 | 101 | 6.47e-12 | 62.0 |
Find 61 sgRNAs with CRISPR-Local
Find 151 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGTATGGAATATGGAAATTT+AGG | 0.157903 | 8.3:-558543 | MS.gene042085:CDS |
| CATCCAAATGGAGGGTATTA+TGG | 0.196296 | 8.3:-558492 | MS.gene042085:CDS |
| CCAATACTCATTTATATTGA+TGG | 0.259870 | 8.3:+558346 | None:intergenic |
| GGAAAGAGGGGTATGGAATA+TGG | 0.311976 | 8.3:-558552 | MS.gene042085:CDS |
| ATCCTTATCACATTTGCAAT+TGG | 0.375002 | 8.3:+558843 | None:intergenic |
| GAGTACATCAGCTTCATAAC+TGG | 0.376606 | 8.3:-558747 | MS.gene042085:CDS |
| CCCACCAACACCAATTCTTC+TGG | 0.388520 | 8.3:-560758 | MS.gene042085:intron |
| TTATTACGTACCAGAAGAAT+TGG | 0.393519 | 8.3:+560748 | None:intergenic |
| TTCCCATAATACCCTCCATT+TGG | 0.403389 | 8.3:+558489 | None:intergenic |
| CACCCAGCAGCAATGGAAAC+TGG | 0.404381 | 8.3:-560809 | None:intergenic |
| ATCCAAATGGAGGGTATTAT+GGG | 0.410012 | 8.3:-558491 | MS.gene042085:CDS |
| CATCGTTACCGTGAGCTTGA+AGG | 0.410024 | 8.3:-558606 | MS.gene042085:CDS |
| AACTGCAGAAGATGTGCTTT+GGG | 0.416101 | 8.3:-558682 | MS.gene042085:CDS |
| GTATGGAATATGGAAATTTA+GGG | 0.421974 | 8.3:-558542 | MS.gene042085:CDS |
| GAAACTGGAGGAGGGTTTCA+TGG | 0.423802 | 8.3:-560794 | MS.gene042085:CDS |
| TAACTGCAGAAGATGTGCTT+TGG | 0.426184 | 8.3:-558683 | MS.gene042085:CDS |
| TGGTGTTGGTGGGGAGTTTG+CGG | 0.433913 | 8.3:+560768 | None:intergenic |
| TTTGTCCCACAGTTTCATAT+TGG | 0.443088 | 8.3:-558516 | MS.gene042085:CDS |
| TTTCATATTGGTCATCCAAA+TGG | 0.444564 | 8.3:-558504 | MS.gene042085:CDS |
| TGGAGGCTCATCTCATTCTC+AGG | 0.455169 | 8.3:-558403 | MS.gene042085:CDS |
| CTTTGGGCTATGAGTAAGCT+TGG | 0.475258 | 8.3:-558666 | MS.gene042085:CDS |
| TGCCAATTGCAAATGTGATA+AGG | 0.483489 | 8.3:-558845 | MS.gene042085:CDS |
| AACAATAGCCACTCATCAGC+TGG | 0.494856 | 8.3:-558915 | MS.gene042085:CDS |
| TGTACTCAGACACACACTCT+TGG | 0.503017 | 8.3:+558763 | None:intergenic |
| ACCAGAAGAATTGGTGTTGG+TGG | 0.512322 | 8.3:+560757 | None:intergenic |
| CCATCCCTCATCATATAAGT+TGG | 0.513039 | 8.3:+558459 | None:intergenic |
| CATTTGCAATTGGCATGAAA+CGG | 0.523120 | 8.3:+558853 | None:intergenic |
| CGATGAAGATACATTGTAAG+AGG | 0.530199 | 8.3:+558624 | None:intergenic |
| ATGGAATATGGAAATTTAGG+GGG | 0.530290 | 8.3:-558540 | MS.gene042085:CDS |
| AGTTGAACCATTGGGAAAGA+GGG | 0.531621 | 8.3:-558565 | MS.gene042085:CDS |
| CCAGAAGAATTGGTGTTGGT+GGG | 0.532173 | 8.3:+560758 | None:intergenic |
| GAGTTGAACCATTGGGAAAG+AGG | 0.533551 | 8.3:-558566 | MS.gene042085:CDS |
| TCCATACCCCTCTTTCCCAA+TGG | 0.539795 | 8.3:+558558 | None:intergenic |
| CTCAATGAGAGTTGAACCAT+TGG | 0.541003 | 8.3:-558574 | MS.gene042085:CDS |
| CAATGGTTCAACTCTCATTG+AGG | 0.552356 | 8.3:+558575 | None:intergenic |
| CATATTGGTCATCCAAATGG+AGG | 0.553538 | 8.3:-558501 | MS.gene042085:CDS |
| TGGAATATGGAAATTTAGGG+GGG | 0.554385 | 8.3:-558539 | MS.gene042085:CDS |
| ACCATTGGGAAAGAGGGGTA+TGG | 0.565142 | 8.3:-558559 | MS.gene042085:CDS |
| CTGCACCAACTTATATGATG+AGG | 0.576417 | 8.3:-558464 | MS.gene042085:CDS |
| GCAGCAATGGAAACTGGAGG+AGG | 0.578206 | 8.3:-560803 | None:intergenic |
| CTTGCAAATGCTGAAGCCAA+TGG | 0.581895 | 8.3:-558378 | MS.gene042085:CDS |
| GTTCTGTTCCAGCTGATGAG+TGG | 0.584456 | 8.3:+558907 | None:intergenic |
| ATGAATACGAGGCAGCAAGT+AGG | 0.584820 | 8.3:-558948 | MS.gene042085:CDS |
| TTGATGGTGATGATGACCAT+TGG | 0.595421 | 8.3:+558362 | None:intergenic |
| TCAATGAGAGTTGAACCATT+GGG | 0.596922 | 8.3:-558573 | MS.gene042085:CDS |
| TACGATCACCTTCAAGCTCA+CGG | 0.607319 | 8.3:+558598 | None:intergenic |
| AACGTTGTCAGAGAGAGCAA+AGG | 0.618049 | 8.3:-558713 | MS.gene042085:CDS |
| ATATTGGTCATCCAAATGGA+GGG | 0.621689 | 8.3:-558500 | MS.gene042085:CDS |
| CGTACCAGAAGAATTGGTGT+TGG | 0.622904 | 8.3:+560754 | None:intergenic |
| TATGGAATATGGAAATTTAG+GGG | 0.625046 | 8.3:-558541 | MS.gene042085:CDS |
| AAGACAATGAATGCATTGTG+AGG | 0.625324 | 8.3:-558884 | MS.gene042085:CDS |
| CCAACTTATATGATGAGGGA+TGG | 0.628590 | 8.3:-558459 | MS.gene042085:CDS |
| CAGAAGAATTGGTGTTGGTG+GGG | 0.631467 | 8.3:+560759 | None:intergenic |
| AGACAATGAATGCATTGTGA+GGG | 0.637888 | 8.3:-558883 | MS.gene042085:CDS |
| CAGCAATGGAAACTGGAGGA+GGG | 0.648465 | 8.3:-560802 | None:intergenic |
| TGCACCAACTTATATGATGA+GGG | 0.648613 | 8.3:-558463 | MS.gene042085:CDS |
| GGATGACCAATATGAAACTG+TGG | 0.661508 | 8.3:+558510 | None:intergenic |
| GTTGAACCATTGGGAAAGAG+GGG | 0.669657 | 8.3:-558564 | MS.gene042085:CDS |
| CAGTTTCTGAGATGAATACG+AGG | 0.679638 | 8.3:-558959 | MS.gene042085:CDS |
| CCAGCAGCAATGGAAACTGG+AGG | 0.696065 | 8.3:-560806 | None:intergenic |
| GATGACCAATATGAAACTGT+GGG | 0.700290 | 8.3:+558511 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATATTCAAACTTAAGTTAT+GGG | + | chr8.3:559295-559314 | None:intergenic | 15.0% |
| !! | ATACATTAGTATATACTTTA+AGG | - | chr8.3:558566-558585 | MS.gene042085:CDS | 15.0% |
| !! | TGATTACAAAGTTAATATTA+TGG | - | chr8.3:560118-560137 | MS.gene042085:intron | 15.0% |
| !!! | TTAATTAAATATTTCTGAGA+TGG | - | chr8.3:560141-560160 | MS.gene042085:intron | 15.0% |
| !! | AACAAACAAACCAATAAAAA+CGG | + | chr8.3:559513-559532 | None:intergenic | 20.0% |
| !! | ACTATGATCATAATATTACA+AGG | - | chr8.3:559037-559056 | MS.gene042085:intron | 20.0% |
| !! | CAATATTCAAACTTAAGTTA+TGG | + | chr8.3:559296-559315 | None:intergenic | 20.0% |
| !!! | AAAAGAAAAAGGCATAAAAA+AGG | - | chr8.3:559483-559502 | MS.gene042085:intron | 20.0% |
| !!! | AAAGAAAAAGGCATAAAAAA+GGG | - | chr8.3:559484-559503 | MS.gene042085:intron | 20.0% |
| !!! | AACCACTTTTTGATAATTTT+TGG | - | chr8.3:559885-559904 | MS.gene042085:intron | 20.0% |
| !!! | ATTTGTTGATATTTTGCATA+AGG | - | chr8.3:558738-558757 | MS.gene042085:CDS | 20.0% |
| !!! | TGAATTGTCATTATGTATTT+TGG | - | chr8.3:558934-558953 | MS.gene042085:CDS | 20.0% |
| !!! | TGTTTGAATACACATATTTT+GGG | + | chr8.3:559395-559414 | None:intergenic | 20.0% |
| ! | AACAGTGATAAGATAGTTAA+CGG | + | chr8.3:559787-559806 | None:intergenic | 25.0% |
| ! | GTATGGAATATGGAAATTTA+GGG | - | chr8.3:560608-560627 | MS.gene042085:intron | 25.0% |
| ! | GTCCAAAAATTATCAAAAAG+TGG | + | chr8.3:559890-559909 | None:intergenic | 25.0% |
| ! | TATGGAATATGGAAATTTAG+GGG | - | chr8.3:560609-560628 | MS.gene042085:intron | 25.0% |
| ! | TATTGTTACTCATCAATAAG+TGG | + | chr8.3:559179-559198 | None:intergenic | 25.0% |
| ! | TCAACAAAGTTGTCATTAAA+TGG | - | chr8.3:560008-560027 | MS.gene042085:intron | 25.0% |
| ! | TTCTTATTGGTCAAAAACAA+TGG | + | chr8.3:559970-559989 | None:intergenic | 25.0% |
| !! | GTGTTTGAATACACATATTT+TGG | + | chr8.3:559396-559415 | None:intergenic | 25.0% |
| !!! | CAAAACAGAAGTATCTAATT+GGG | + | chr8.3:559136-559155 | None:intergenic | 25.0% |
| !!! | TGTCATTATGTATTTTGGAA+TGG | - | chr8.3:558939-558958 | MS.gene042085:CDS | 25.0% |
| AAAACAATGGAGAGAGAAAA+AGG | + | chr8.3:559957-559976 | None:intergenic | 30.0% | |
| AAGAAGACAAGCAGATAAAA+AGG | + | chr8.3:559096-559115 | None:intergenic | 30.0% | |
| AATAAGAAGTGAGAAAACCA+AGG | - | chr8.3:559982-560001 | MS.gene042085:intron | 30.0% | |
| ACGAATGCATGAAAAGAAAA+AGG | - | chr8.3:559472-559491 | MS.gene042085:intron | 30.0% | |
| AGATAAAAAGGCTTAAAAGG+TGG | + | chr8.3:559084-559103 | None:intergenic | 30.0% | |
| AGCAGATAAAAAGGCTTAAA+AGG | + | chr8.3:559087-559106 | None:intergenic | 30.0% | |
| AGTCCAAAAATAGTACATCA+AGG | + | chr8.3:559321-559340 | None:intergenic | 30.0% | |
| ATAGTTAACGGTGTATCAAA+TGG | + | chr8.3:559775-559794 | None:intergenic | 30.0% | |
| ATCCTTATCACATTTGCAAT+TGG | + | chr8.3:560310-560329 | None:intergenic | 30.0% | |
| ATGGAATATGGAAATTTAGG+GGG | - | chr8.3:560610-560629 | MS.gene042085:intron | 30.0% | |
| CAATTTCTTAAATGACACTG+TGG | + | chr8.3:559366-559385 | None:intergenic | 30.0% | |
| GGTATGGAATATGGAAATTT+AGG | - | chr8.3:560607-560626 | MS.gene042085:intron | 30.0% | |
| GTCCAAAAATAGTACATCAA+GGG | + | chr8.3:559320-559339 | None:intergenic | 30.0% | |
| GTGAGAAATCAAGATCAAAT+TGG | + | chr8.3:558531-558550 | None:intergenic | 30.0% | |
| TGACTCAACACAATATCATA+TGG | + | chr8.3:558671-558690 | None:intergenic | 30.0% | |
| TTACTTGCACAACAAAACAA+AGG | + | chr8.3:558864-558883 | None:intergenic | 30.0% | |
| TTATTACGTACCAGAAGAAT+TGG | + | chr8.3:558405-558424 | None:intergenic | 30.0% | |
| TTTCATATTGGTCATCCAAA+TGG | - | chr8.3:560646-560665 | MS.gene042085:intron | 30.0% | |
| ! | CCAATTAGATACTTCTGTTT+TGG | - | chr8.3:559134-559153 | MS.gene042085:intron | 30.0% |
| !! | AAAAGGGAAACCGTTTTTAT+TGG | - | chr8.3:559500-559519 | MS.gene042085:intron | 30.0% |
| !! | CCAAAACAGAAGTATCTAAT+TGG | + | chr8.3:559137-559156 | None:intergenic | 30.0% |
| !! | TTGGTTTTCTCACTTCTTAT+TGG | + | chr8.3:559983-560002 | None:intergenic | 30.0% |
| !!! | TTCTTTTTTCTTTGCTGTGA+AGG | - | chr8.3:558498-558517 | MS.gene042085:CDS | 30.0% |
| AACAGAGGAATCAGAACTAA+AGG | + | chr8.3:559577-559596 | None:intergenic | 35.0% | |
| AACCTTGGAAAAGAAGATGA+TGG | - | chr8.3:558898-558917 | MS.gene042085:CDS | 35.0% | |
| AAGACAATGAATGCATTGTG+AGG | - | chr8.3:560266-560285 | MS.gene042085:intron | 35.0% | |
| AGACAATGAATGCATTGTGA+GGG | - | chr8.3:560267-560286 | MS.gene042085:intron | 35.0% | |
| ATATTGGTCATCCAAATGGA+GGG | - | chr8.3:560650-560669 | MS.gene042085:intron | 35.0% | |
| CAGAACTAAAGGACAAAAAG+AGG | + | chr8.3:559566-559585 | None:intergenic | 35.0% | |
| CATTTGCAATTGGCATGAAA+CGG | + | chr8.3:560300-560319 | None:intergenic | 35.0% | |
| CCTTTAATCGCATGCAATTA+GGG | - | chr8.3:559540-559559 | MS.gene042085:intron | 35.0% | |
| CGATGAAGATACATTGTAAG+AGG | + | chr8.3:560529-560548 | None:intergenic | 35.0% | |
| CTAAGACTAAGACTATAGGT+AGG | + | chr8.3:559649-559668 | None:intergenic | 35.0% | |
| GATGACCAATATGAAACTGT+GGG | + | chr8.3:560642-560661 | None:intergenic | 35.0% | |
| TCAATGAGAGTTGAACCATT+GGG | - | chr8.3:560577-560596 | MS.gene042085:intron | 35.0% | |
| TCCTTTAATCGCATGCAATT+AGG | - | chr8.3:559539-559558 | MS.gene042085:intron | 35.0% | |
| TGCACCAACTTATATGATGA+GGG | - | chr8.3:560687-560706 | MS.gene042085:intron | 35.0% | |
| TGCCAATTGCAAATGTGATA+AGG | - | chr8.3:560305-560324 | MS.gene042085:intron | 35.0% | |
| TGGAATATGGAAATTTAGGG+GGG | - | chr8.3:560611-560630 | MS.gene042085:intron | 35.0% | |
| TTGATTACTTGAGCAAGGTT+CGG | - | chr8.3:559420-559439 | MS.gene042085:intron | 35.0% | |
| TTGTCTTCTTTCACTCTTTC+AGG | - | chr8.3:559106-559125 | MS.gene042085:intron | 35.0% | |
| TTTGTCCCACAGTTTCATAT+TGG | - | chr8.3:560634-560653 | MS.gene042085:intron | 35.0% | |
| ! | AAAGAAGATGATGGCGTAAA+TGG | - | chr8.3:558907-558926 | MS.gene042085:CDS | 35.0% |
| ! | AAGAAGATGATGGCGTAAAT+GGG | - | chr8.3:558908-558927 | MS.gene042085:CDS | 35.0% |
| ! | AAGAGTGTGAAAACTTGTCA+TGG | + | chr8.3:559263-559282 | None:intergenic | 35.0% |
| ! | GTCCCTTGATGTACTATTTT+TGG | - | chr8.3:559315-559334 | MS.gene042085:intron | 35.0% |
| ! | TCATCAGAGATTTTTGCATG+TGG | + | chr8.3:560352-560371 | None:intergenic | 35.0% |
| ! | TTTGTTGTGCAAGTAAAGCA+AGG | - | chr8.3:558868-558887 | MS.gene042085:CDS | 35.0% |
| !! | ACAGAAGTATCTAATTGGGT+TGG | + | chr8.3:559132-559151 | None:intergenic | 35.0% |
| !! | ATCCAAATGGAGGGTATTAT+GGG | - | chr8.3:560659-560678 | MS.gene042085:intron | 35.0% |
| AACTGCAGAAGATGTGCTTT+GGG | - | chr8.3:560468-560487 | MS.gene042085:intron | 40.0% | |
| AGAGAGAAAAAGGAAGAGAG+AGG | + | chr8.3:559947-559966 | None:intergenic | 40.0% | |
| AGTTGAACCATTGGGAAAGA+GGG | - | chr8.3:560585-560604 | MS.gene042085:intron | 40.0% | |
| AGTTGAAGAGAGAACGAAAG+AGG | + | chr8.3:559731-559750 | None:intergenic | 40.0% | |
| CAATGGTTCAACTCTCATTG+AGG | + | chr8.3:560578-560597 | None:intergenic | 40.0% | |
| CACAACAAAACAAAGGTGAC+TGG | + | chr8.3:558857-558876 | None:intergenic | 40.0% | |
| CATATTGGTCATCCAAATGG+AGG | - | chr8.3:560649-560668 | MS.gene042085:intron | 40.0% | |
| CCAACTTATATGATGAGGGA+TGG | - | chr8.3:560691-560710 | MS.gene042085:intron | 40.0% | |
| CCATCCCTCATCATATAAGT+TGG | + | chr8.3:560694-560713 | None:intergenic | 40.0% | |
| CCCTAATTGCATGCGATTAA+AGG | + | chr8.3:559543-559562 | None:intergenic | 40.0% | |
| CGCAATTGATTACTTGAGCA+AGG | - | chr8.3:559415-559434 | MS.gene042085:intron | 40.0% | |
| CTCAATGAGAGTTGAACCAT+TGG | - | chr8.3:560576-560595 | MS.gene042085:intron | 40.0% | |
| CTGCACCAACTTATATGATG+AGG | - | chr8.3:560686-560705 | MS.gene042085:intron | 40.0% | |
| GACAACTTTGTTGACAACCT+TGG | + | chr8.3:560002-560021 | None:intergenic | 40.0% | |
| GAGTACATCAGCTTCATAAC+TGG | - | chr8.3:560403-560422 | MS.gene042085:intron | 40.0% | |
| GATCTTGATTTCTCACATGC+AGG | - | chr8.3:558535-558554 | MS.gene042085:CDS | 40.0% | |
| GGATGACCAATATGAAACTG+TGG | + | chr8.3:560643-560662 | None:intergenic | 40.0% | |
| GGCTTAAAAGGTGGTAATAG+TGG | + | chr8.3:559075-559094 | None:intergenic | 40.0% | |
| GTGCAAGTAAAGCAAGGTAA+CGG | - | chr8.3:558874-558893 | MS.gene042085:CDS | 40.0% | |
| TAACTGCAGAAGATGTGCTT+TGG | - | chr8.3:560467-560486 | MS.gene042085:intron | 40.0% | |
| TGGGCTAAGACTAAGACTAT+AGG | + | chr8.3:559653-559672 | None:intergenic | 40.0% | |
| TTCCCATAATACCCTCCATT+TGG | + | chr8.3:560664-560683 | None:intergenic | 40.0% | |
| ! | AGACTATAGGTAGGTGTTGT+TGG | + | chr8.3:559640-559659 | None:intergenic | 40.0% |
| ! | TCAGAGATTTTTGCATGTGG+TGG | + | chr8.3:560349-560368 | None:intergenic | 40.0% |
| !! | CAGTTTCTGAGATGAATACG+AGG | - | chr8.3:560191-560210 | MS.gene042085:intron | 40.0% |
| !! | CATCCAAATGGAGGGTATTA+TGG | - | chr8.3:560658-560677 | MS.gene042085:intron | 40.0% |
| !! | GACTATAGGTAGGTGTTGTT+GGG | + | chr8.3:559639-559658 | None:intergenic | 40.0% |
| !! | TTGATGGTGATGATGACCAT+TGG | + | chr8.3:560791-560810 | None:intergenic | 40.0% |
| AACAATAGCCACTCATCAGC+TGG | - | chr8.3:560235-560254 | MS.gene042085:intron | 45.0% | |
| AACGTTGTCAGAGAGAGCAA+AGG | - | chr8.3:560437-560456 | MS.gene042085:intron | 45.0% | |
| AGAGGCAATGACAAGTAGGA+TGG | + | chr8.3:559713-559732 | None:intergenic | 45.0% | |
| ATGAATACGAGGCAGCAAGT+AGG | - | chr8.3:560202-560221 | MS.gene042085:intron | 45.0% | |
| CAAAGGTGACTGGAGTGATA+TGG | + | chr8.3:558847-558866 | None:intergenic | 45.0% | |
| CAATGACAAGTAGGATGGGT+CGG | + | chr8.3:559708-559727 | None:intergenic | 45.0% | |
| CCCAATTAGAGAGAGAGAGT+GGG | + | chr8.3:559672-559691 | None:intergenic | 45.0% | |
| CCCACTCTCTCTCTCTAATT+GGG | - | chr8.3:559669-559688 | MS.gene042085:intron | 45.0% | |
| CGAAAGAGGCAATGACAAGT+AGG | + | chr8.3:559717-559736 | None:intergenic | 45.0% | |
| CGTACCAGAAGAATTGGTGT+TGG | + | chr8.3:558399-558418 | None:intergenic | 45.0% | |
| CTGAGATGGATATTGCAGCA+GGG | - | chr8.3:560155-560174 | MS.gene042085:intron | 45.0% | |
| CTTGCAAATGCTGAAGCCAA+TGG | - | chr8.3:560772-560791 | MS.gene042085:CDS | 45.0% | |
| CTTTGGGCTATGAGTAAGCT+TGG | - | chr8.3:560484-560503 | MS.gene042085:intron | 45.0% | |
| GAGGCAATGACAAGTAGGAT+GGG | + | chr8.3:559712-559731 | None:intergenic | 45.0% | |
| GAGTTGAACCATTGGGAAAG+AGG | - | chr8.3:560584-560603 | MS.gene042085:intron | 45.0% | |
| GTTGAACCATTGGGAAAGAG+GGG | - | chr8.3:560586-560605 | MS.gene042085:intron | 45.0% | |
| TACGATCACCTTCAAGCTCA+CGG | + | chr8.3:560555-560574 | None:intergenic | 45.0% | |
| TGTACTCAGACACACACTCT+TGG | + | chr8.3:560390-560409 | None:intergenic | 45.0% | |
| ! | CGCCATCATCTTCTTTTCCA+AGG | + | chr8.3:558903-558922 | None:intergenic | 45.0% |
| ! | GGAAAGAGGGGTATGGAATA+TGG | - | chr8.3:560598-560617 | MS.gene042085:intron | 45.0% |
| ! | GTAGCTTTTCTCGAGAACAG+AGG | + | chr8.3:559592-559611 | None:intergenic | 45.0% |
| ! | TCTGAGATGGATATTGCAGC+AGG | - | chr8.3:560154-560173 | MS.gene042085:intron | 45.0% |
| !! | AAGCAAGGTAACGGAAACCT+TGG | - | chr8.3:558883-558902 | MS.gene042085:CDS | 45.0% |
| !! | ACCAGAAGAATTGGTGTTGG+TGG | + | chr8.3:558396-558415 | None:intergenic | 45.0% |
| !! | ATAGGTAGGTGTTGTTGGGA+GGG | + | chr8.3:559635-559654 | None:intergenic | 45.0% |
| !! | CAGAAGAATTGGTGTTGGTG+GGG | + | chr8.3:558394-558413 | None:intergenic | 45.0% |
| !! | CCAGAAGAATTGGTGTTGGT+GGG | + | chr8.3:558395-558414 | None:intergenic | 45.0% |
| !! | TATAGGTAGGTGTTGTTGGG+AGG | + | chr8.3:559636-559655 | None:intergenic | 45.0% |
| ACCATTGGGAAAGAGGGGTA+TGG | - | chr8.3:560591-560610 | MS.gene042085:intron | 50.0% | |
| AGGTGACTGGAGTGATATGG+TGG | + | chr8.3:558844-558863 | None:intergenic | 50.0% | |
| CATCGTTACCGTGAGCTTGA+AGG | - | chr8.3:560544-560563 | MS.gene042085:intron | 50.0% | |
| CCCACCAACACCAATTCTTC+TGG | - | chr8.3:558392-558411 | MS.gene042085:CDS | 50.0% | |
| GAAACTGGAGGAGGGTTTCA+TGG | - | chr8.3:558356-558375 | MS.gene042085:CDS | 50.0% | |
| GCCCAATTAGAGAGAGAGAG+TGG | + | chr8.3:559673-559692 | None:intergenic | 50.0% | |
| GCCCACTCTCTCTCTCTAAT+TGG | - | chr8.3:559668-559687 | MS.gene042085:intron | 50.0% | |
| GTTCTGTTCCAGCTGATGAG+TGG | + | chr8.3:560246-560265 | None:intergenic | 50.0% | |
| TCCATACCCCTCTTTCCCAA+TGG | + | chr8.3:560595-560614 | None:intergenic | 50.0% | |
| TGACTGGAGTGATATGGTGG+TGG | + | chr8.3:558841-558860 | None:intergenic | 50.0% | |
| TGGAGGCTCATCTCATTCTC+AGG | - | chr8.3:560747-560766 | MS.gene042085:intron | 50.0% | |
| ACAAATGCTGCTGCTGCTGC+TGG | - | chr8.3:560727-560746 | MS.gene042085:intron | 55.0% | |
| TGACAAGTAGGATGGGTCGG+TGG | + | chr8.3:559705-559724 | None:intergenic | 55.0% | |
| !! | TGGTGTTGGTGGGGAGTTTG+CGG | + | chr8.3:558385-558404 | None:intergenic | 55.0% |
| AATGCTGCTGCTGCTGCTGG+AGG | - | chr8.3:560730-560749 | MS.gene042085:intron | 60.0% | |
| AGTAGGATGGGTCGGTGGTG+AGG | + | chr8.3:559700-559719 | None:intergenic | 60.0% | |
| GTAGGATGGGTCGGTGGTGA+GGG | + | chr8.3:559699-559718 | None:intergenic | 60.0% | |
| TAGGATGGGTCGGTGGTGAG+GGG | + | chr8.3:559698-559717 | None:intergenic | 60.0% | |
| AGGATGGGTCGGTGGTGAGG+GGG | + | chr8.3:559697-559716 | None:intergenic | 65.0% | |
| ! | GTTGGGAGGGAGCGTGTGTC+AGG | + | chr8.3:559622-559641 | None:intergenic | 65.0% |
| GATGGGTCGGTGGTGAGGGG+GGG | + | chr8.3:559695-559714 | None:intergenic | 70.0% | |
| GGATGGGTCGGTGGTGAGGG+GGG | + | chr8.3:559696-559715 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.3 | gene | 558353 | 560819 | 558353 | ID=MS.gene042085 |
| chr8.3 | mRNA | 558353 | 560819 | 558353 | ID=MS.gene042085.t1;Parent=MS.gene042085 |
| chr8.3 | exon | 560759 | 560819 | 560759 | ID=MS.gene042085.t1.exon1;Parent=MS.gene042085.t1 |
| chr8.3 | CDS | 560759 | 560819 | 560759 | ID=cds.MS.gene042085.t1;Parent=MS.gene042085.t1 |
| chr8.3 | exon | 558353 | 558999 | 558353 | ID=MS.gene042085.t1.exon2;Parent=MS.gene042085.t1 |
| chr8.3 | CDS | 558353 | 558999 | 558353 | ID=cds.MS.gene042085.t1;Parent=MS.gene042085.t1 |
| Gene Sequence |
| Protein sequence |
